Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792250 | TKY58704.1 | 86.079 | 431 | 25 | 1 | 1 | 396 | 106 | 536 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792250 | sp|Q8VYN6|PFKA5_ARATH | 78.422 | 431 | 57 | 2 | 1 | 396 | 108 | 537 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792250 | G7LJ94 | 90.951 | 431 | 4 | 1 | 1 | 396 | 99 | 529 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625100 | Msa0792250 | 0.815611 | 8.458582e-52 | -8.615850e-47 |
| Msa0670280 | Msa0792250 | 0.821323 | 4.291406e-53 | -8.615850e-47 |
| Msa0792250 | Msa1198360 | 0.942761 | 4.048144e-102 | -8.615850e-47 |
| Msa0792250 | Msa1292660 | 0.856915 | 2.328661e-62 | -8.615850e-47 |
| Msa0792250 | Msa1303400 | 0.808493 | 3.014604e-50 | -8.615850e-47 |
| Msa0300470 | Msa0792250 | 0.807279 | 5.463153e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792250 | MtrunA17_Chr8g0367681 | 90.951 | 431 | 4 | 1 | 1 | 396 | 99 | 529 | 0.0 | 799 |
| Msa0792250 | MtrunA17_Chr5g0412481 | 80.510 | 431 | 49 | 1 | 1 | 396 | 103 | 533 | 0.0 | 711 |
| Msa0792250 | MtrunA17_Chr1g0196891 | 49.604 | 379 | 148 | 5 | 59 | 396 | 144 | 520 | 6.96e-119 | 356 |
| Msa0792250 | MtrunA17_Chr3g0140611 | 49.206 | 378 | 149 | 4 | 60 | 396 | 79 | 454 | 2.87e-118 | 353 |
| Msa0792250 | MtrunA17_Chr6g0487421 | 47.884 | 378 | 154 | 4 | 60 | 396 | 75 | 450 | 8.72e-116 | 347 |
| Msa0792250 | MtrunA17_Chr8g0389631 | 48.285 | 379 | 152 | 5 | 60 | 396 | 78 | 454 | 8.18e-115 | 343 |
| Msa0792250 | MtrunA17_Chr2g0330871 | 46.269 | 402 | 162 | 4 | 47 | 396 | 54 | 453 | 2.85e-113 | 339 |
| Msa0792250 | MtrunA17_Chr4g0076591 | 40.058 | 347 | 167 | 3 | 91 | 396 | 92 | 438 | 4.33e-83 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792250 | AT2G22480.1 | 78.422 | 431 | 57 | 2 | 1 | 396 | 108 | 537 | 0.0 | 695 |
| Msa0792250 | AT4G26270.1 | 48.942 | 378 | 151 | 3 | 59 | 396 | 77 | 452 | 8.20e-119 | 354 |
| Msa0792250 | AT5G56630.1 | 48.011 | 377 | 155 | 3 | 59 | 396 | 77 | 451 | 1.73e-118 | 353 |
| Msa0792250 | AT4G29220.1 | 48.677 | 378 | 150 | 4 | 60 | 396 | 79 | 453 | 1.84e-118 | 353 |
| Msa0792250 | AT4G32840.1 | 48.404 | 376 | 154 | 4 | 59 | 396 | 78 | 451 | 2.36e-117 | 349 |
| Msa0792250 | AT5G61580.1 | 47.493 | 379 | 156 | 4 | 59 | 396 | 128 | 504 | 3.51e-116 | 348 |
| Msa0792250 | AT5G61580.2 | 47.769 | 381 | 151 | 6 | 59 | 396 | 128 | 503 | 6.46e-115 | 345 |
| Msa0792250 | AT5G47810.1 | 45.144 | 381 | 161 | 6 | 59 | 395 | 62 | 438 | 7.81e-103 | 311 |
Find 152 sgRNAs with CRISPR-Local
Find 2 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAACCTCCTGACTTTAT+TGG | 0.111185 | 5_3:+3370884 | Msa0792240:intron |
| GCATCGGGAAATATTGTATT+TGG | 0.212553 | 5_3:-3372680 | Msa0792250:CDS |
| ATTGCTGCCTTTACATCTTC+TGG | 0.244966 | 5_3:+3375306 | None:intergenic |
| CCAATAAAGTCAGGAGGTTT+TGG | 0.247329 | 5_3:-3370884 | Msa0792250:three_prime_UTR |
| AAGGTAGGGGTTGGTGGTGG+TGG | 0.277346 | 5_3:+3378176 | None:intergenic |
| CAGGTTCATGGTGCATTTGC+AGG | 0.304702 | 5_3:-3371071 | Msa0792250:CDS |
| GTAATTACACTTGAAATATA+TGG | 0.308392 | 5_3:-3374784 | Msa0792250:CDS |
| CATAGTGCATATCATGGAAT+TGG | 0.311056 | 5_3:-3373673 | Msa0792250:CDS |
| TGATAATGATATTCTATTGA+TGG | 0.314500 | 5_3:-3373862 | Msa0792250:CDS |
| TAGTGATATCGTGGATAGTT+TGG | 0.315207 | 5_3:-3374486 | Msa0792250:CDS |
| AGAAGGAATAGGAGGAGAAT+CGG | 0.321030 | 5_3:+3377946 | None:intergenic |
| AAGGTTAAGGTAGGGGTTGG+TGG | 0.328226 | 5_3:+3378170 | None:intergenic |
| CAGTCATATCTCAAAATAAT+AGG | 0.330054 | 5_3:-3370793 | Msa0792250:three_prime_UTR |
| GACTGTTTCGGCAAATTTGC+CGG | 0.333526 | 5_3:+3370811 | Msa0792240:intron |
| CTATTGATGGATAAAACATT+TGG | 0.346190 | 5_3:-3373849 | Msa0792250:CDS |
| TAGAGGAACGGATTTGAGTT+TGG | 0.351801 | 5_3:+3378142 | None:intergenic |
| CGTCAACCTGTCCACTAGAT+AGG | 0.361135 | 5_3:+3373599 | None:intergenic |
| CTATCTGGTGGAAGCCTGTT+GGG | 0.362368 | 5_3:-3374533 | Msa0792250:CDS |
| CGGGGATGCGATATTACTTC+GGG | 0.363464 | 5_3:+3370993 | Msa0792240:CDS |
| AATATTGTATTTGGAGATAT+CGG | 0.363677 | 5_3:-3372671 | Msa0792250:CDS |
| TTGATTTCAATGATCCTGAT+TGG | 0.365082 | 5_3:-3378033 | Msa0792250:five_prime_UTR |
| GGGTTCATCGAGCTGGGCCT+CGG | 0.369686 | 5_3:-3375347 | Msa0792250:CDS |
| GTTCAGAATATTCATCTATC+TGG | 0.385946 | 5_3:-3374548 | Msa0792250:CDS |
| GAGTTTGGTGAGGAAGGTTA+AGG | 0.389338 | 5_3:+3378157 | None:intergenic |
| AAGATAGTGGGGATTCCTTT+CGG | 0.398897 | 5_3:-3374754 | Msa0792250:CDS |
| GACTGTTCGGGTCCACCAAT+CGG | 0.402341 | 5_3:+3370973 | Msa0792240:CDS |
| TGAAACTTGAATTTCCAATC+AGG | 0.406627 | 5_3:+3378019 | None:intergenic |
| ATAGTGCATATCATGGAATT+GGG | 0.407095 | 5_3:-3373672 | Msa0792250:CDS |
| AGACAAAAGGTAGAAGGAAT+AGG | 0.407681 | 5_3:+3377935 | None:intergenic |
| GTTAAGGTAGGGGTTGGTGG+TGG | 0.412439 | 5_3:+3378173 | None:intergenic |
| GCATTGACCCCGATTGTACT+TGG | 0.416229 | 5_3:-3376284 | Msa0792250:CDS |
| ATTCTAAGACAAAAGGTAGA+AGG | 0.417919 | 5_3:+3377929 | None:intergenic |
| GTGAGAGAGTGTGAGTATAG+AGG | 0.422982 | 5_3:+3378125 | None:intergenic |
| TGCGATATTACTTCGGGGAT+GGG | 0.431742 | 5_3:+3370999 | Msa0792240:CDS |
| CACTCAGCACCAGCAGATTT+AGG | 0.432003 | 5_3:+3376306 | None:intergenic |
| GAAGGAATAGGAGGAGAATC+GGG | 0.437265 | 5_3:+3377947 | None:intergenic |
| ACATGTGGAGGGCTCTGCCC+TGG | 0.437636 | 5_3:-3375279 | Msa0792250:CDS |
| CGATGCCACATACGACTGTT+CGG | 0.437945 | 5_3:+3370960 | Msa0792240:CDS |
| TCAGATTTCACACTCTTCAA+TGG | 0.440265 | 5_3:-3378220 | Msa0792250:five_prime_UTR |
| TTGTTCTACCCAAGTACAAT+CGG | 0.442406 | 5_3:+3376275 | None:intergenic |
| CATCGATGCTTAACTTCAAC+CGG | 0.452354 | 5_3:-3370942 | Msa0792250:CDS |
| AATAATTATCAGATGAAGTC+AGG | 0.452604 | 5_3:+3370915 | Msa0792240:intron |
| AATGTTAATTTGAATGCTGC+AGG | 0.455307 | 5_3:+3370707 | Msa0792240:intron |
| ACTTCCAAAGAGTATATCAT+AGG | 0.456586 | 5_3:-3370854 | Msa0792250:three_prime_UTR |
| TGGTGGTGGTGGTGATCGCG+TGG | 0.459745 | 5_3:+3378187 | None:intergenic |
| ACAAATCGATCAATTACAAA+TGG | 0.461669 | 5_3:+3370643 | Msa0792240:intron |
| CTTTCTAGGGTTCATCGAGC+TGG | 0.462660 | 5_3:-3375354 | Msa0792250:intron |
| CGGCTCAAGATGTCTATCAT+TGG | 0.465886 | 5_3:-3373900 | Msa0792250:CDS |
| AATTGGGGTTGTGAAGTTGA+TGG | 0.469121 | 5_3:-3373656 | Msa0792250:CDS |
| ACTGTTCGGGTCCACCAATC+GGG | 0.469333 | 5_3:+3370974 | Msa0792240:CDS |
| TTACACTTTCCAATAAAGTC+AGG | 0.471544 | 5_3:-3370893 | Msa0792250:three_prime_UTR |
| TCTTGAAAACTCTAGGGAGT+TGG | 0.476524 | 5_3:+3378101 | None:intergenic |
| GGTTCATCGAGCTGGGCCTC+GGG | 0.477026 | 5_3:-3375346 | Msa0792250:CDS |
| TCCCGATGCATCTTTAGCAT+TGG | 0.478146 | 5_3:+3372694 | None:intergenic |
| AGTAATATCGCATCCCCGAT+TGG | 0.481709 | 5_3:-3370988 | Msa0792250:CDS |
| GGATTTGAGTTTGGTGAGGA+AGG | 0.484020 | 5_3:+3378151 | None:intergenic |
| TAGTGGGTTCATTGCAATGC+AGG | 0.484265 | 5_3:-3373626 | Msa0792250:CDS |
| CTCCTCGTGAAACTCCCAAC+AGG | 0.484432 | 5_3:+3374519 | None:intergenic |
| GCGATATTACTTCGGGGATG+GGG | 0.486371 | 5_3:+3371000 | Msa0792240:CDS |
| CATTTATGTATCTCATATTG+AGG | 0.487973 | 5_3:-3370618 | Msa0792250:three_prime_UTR |
| TGGTGAGGAAGGTTAAGGTA+GGG | 0.488106 | 5_3:+3378162 | None:intergenic |
| TTGGTGAGGAAGGTTAAGGT+AGG | 0.488792 | 5_3:+3378161 | None:intergenic |
| GGAGTTTCACGAGGAGGACC+TGG | 0.491463 | 5_3:-3374512 | Msa0792250:CDS |
| AAACCTCATTCTAAGACAAA+AGG | 0.492051 | 5_3:+3377922 | None:intergenic |
| CCAACATTCTTGAAAACTCT+AGG | 0.492939 | 5_3:+3378094 | None:intergenic |
| TCTATCTGGTGGAAGCCTGT+TGG | 0.493149 | 5_3:-3374534 | Msa0792250:CDS |
| CCGATTGGTAAAGATATTCC+AGG | 0.494367 | 5_3:-3377361 | Msa0792250:CDS |
| CACCAATGCTAAAGATGCAT+CGG | 0.496246 | 5_3:-3372696 | Msa0792250:CDS |
| TTTCTAGGGTTCATCGAGCT+GGG | 0.496291 | 5_3:-3375353 | Msa0792250:intron |
| GGCTTCCCTATCTAGTGGAC+AGG | 0.496499 | 5_3:-3373605 | Msa0792250:CDS |
| TGCAGTGGAAGAAGCTCAAA+GGG | 0.498886 | 5_3:-3373817 | Msa0792250:CDS |
| TGATTGAATGTGAGAGATGA+AGG | 0.498998 | 5_3:+3378246 | None:intergenic |
| TTATTGATTTGTAGGAGAGA+GGG | 0.500902 | 5_3:-3374376 | Msa0792250:intron |
| GGTGAGGAAGGTTAAGGTAG+GGG | 0.500910 | 5_3:+3378163 | None:intergenic |
| TCAGATGAAGTCAGGTTGGC+CGG | 0.505132 | 5_3:+3370923 | Msa0792240:intron |
| GATGCCACATACGACTGTTC+GGG | 0.505910 | 5_3:+3370961 | Msa0792240:CDS |
| AGAGTGTGAGTATAGAGGAA+CGG | 0.507223 | 5_3:+3378130 | None:intergenic |
| ATTATTGATTTGTAGGAGAG+AGG | 0.511641 | 5_3:-3374377 | Msa0792250:intron |
| AAATAGCTTCAAATTATGTC+CGG | 0.517300 | 5_3:-3370830 | Msa0792250:three_prime_UTR |
| ACCAATGCTAAAGATGCATC+GGG | 0.527721 | 5_3:-3372695 | Msa0792250:CDS |
| ATTGGGGTTGTGAAGTTGAT+GGG | 0.528880 | 5_3:-3373655 | Msa0792250:CDS |
| CCTGGAATATCTTTACCAAT+CGG | 0.529294 | 5_3:+3377361 | None:intergenic |
| TAGGCACATAGTGCATATCA+TGG | 0.529509 | 5_3:-3373679 | Msa0792250:CDS |
| TGTTCTACCCAAGTACAATC+GGG | 0.533435 | 5_3:+3376276 | None:intergenic |
| CTATAAACCAGAAGATGTAA+AGG | 0.533722 | 5_3:-3375313 | Msa0792250:CDS |
| TATTCATCGCCTAAATCTGC+TGG | 0.535561 | 5_3:-3376315 | Msa0792250:CDS |
| CAAAAGGTAGAAGGAATAGG+AGG | 0.537406 | 5_3:+3377938 | None:intergenic |
| ATGCGATATTACTTCGGGGA+TGG | 0.538861 | 5_3:+3370998 | Msa0792240:CDS |
| TTCACAGCTGTCGAGAAAAG+TGG | 0.542202 | 5_3:-3374570 | Msa0792250:intron |
| TGATATCGTGGATAGTTTGG+AGG | 0.544206 | 5_3:-3374483 | Msa0792250:intron |
| TCGGGGATGCGATATTACTT+CGG | 0.544737 | 5_3:+3370992 | Msa0792240:CDS |
| AAGTTGATGGGCCGTAGTAG+TGG | 0.546997 | 5_3:-3373643 | Msa0792250:CDS |
| CAAAGAATTGACAGAAGTGC+CGG | 0.549478 | 5_3:-3374713 | Msa0792250:intron |
| GCAGCAATTGTCACATGTGG+AGG | 0.550504 | 5_3:-3375291 | Msa0792250:CDS |
| GGTGGAAATGGCACACATGC+AGG | 0.551168 | 5_3:-3374332 | Msa0792250:CDS |
| GGGATTCCTTTCGGTTATCG+TGG | 0.553476 | 5_3:-3374745 | Msa0792250:CDS |
| GGAAAGATATCAGTAATATG+AGG | 0.553896 | 5_3:+3377968 | None:intergenic |
| GGTGGTGGTGGTGATCGCGT+GGG | 0.554656 | 5_3:+3378188 | None:intergenic |
| AGGAAGGTTAAGGTAGGGGT+TGG | 0.554897 | 5_3:+3378167 | None:intergenic |
| AATAAATTCTGCATACATTG+AGG | 0.556730 | 5_3:-3373793 | Msa0792250:intron |
| ATTTGGTTATTTGTATAGCA+TGG | 0.558081 | 5_3:-3370746 | Msa0792250:three_prime_UTR |
| CAACATTCTTGAAAACTCTA+GGG | 0.558512 | 5_3:+3378095 | None:intergenic |
| CATGCACGGATCATATATGT+TGG | 0.559002 | 5_3:+3372071 | Msa0792240:intron |
| AGGTCATTATACATTGGATG+AGG | 0.559612 | 5_3:-3377341 | Msa0792250:CDS |
| TTGCAATGAACCCACTACTA+CGG | 0.560133 | 5_3:+3373632 | None:intergenic |
| CTGCAGTGGAAGAAGCTCAA+AGG | 0.561250 | 5_3:-3373818 | Msa0792250:CDS |
| CATTGACCCCGATTGTACTT+GGG | 0.561467 | 5_3:-3376283 | Msa0792250:CDS |
| TCTTAATGATGTCATCAGAC+AGG | 0.562649 | 5_3:-3375256 | Msa0792250:intron |
| CTGATGACATCATTAAGACC+AGG | 0.563339 | 5_3:+3375261 | None:intergenic |
| CAGAATATTCATCTATCTGG+TGG | 0.567796 | 5_3:-3374545 | Msa0792250:CDS |
| CACTTTCCAATAAAGTCAGG+AGG | 0.573522 | 5_3:-3370890 | Msa0792250:three_prime_UTR |
| CGGTGTATATATTCAACAAG+AGG | 0.579239 | 5_3:-3372651 | Msa0792250:intron |
| AGTTGATGGGCCGTAGTAGT+GGG | 0.579276 | 5_3:-3373642 | Msa0792250:CDS |
| ATGCATTTGCTCGACATGCA+CGG | 0.579559 | 5_3:+3372057 | Msa0792240:intron |
| TATTCCAGGTCATTATACAT+TGG | 0.579882 | 5_3:-3377347 | Msa0792250:CDS |
| TGTCGAGCAAATGCATCAGA+TGG | 0.581648 | 5_3:-3372050 | Msa0792250:CDS |
| GTCAACCTGTCCACTAGATA+GGG | 0.582532 | 5_3:+3373600 | None:intergenic |
| GAACGGATTTGAGTTTGGTG+AGG | 0.585776 | 5_3:+3378147 | None:intergenic |
| TTGACTTAGTTATGATATCG+AGG | 0.589140 | 5_3:+3378333 | None:intergenic |
| ATGCAGGCTTCCCTATCTAG+TGG | 0.589232 | 5_3:-3373610 | Msa0792250:CDS |
| CATATCTCAAAATAATAGGA+AGG | 0.594576 | 5_3:-3370789 | Msa0792250:three_prime_UTR |
| ACCTGGAGTTAGTGATATCG+TGG | 0.598888 | 5_3:-3374495 | Msa0792250:CDS |
| GAGAGATGAAGGTGAAGGAT+CGG | 0.600041 | 5_3:+3378257 | None:intergenic |
| AAGGTGAAGGATCGGTCGGA+AGG | 0.602512 | 5_3:+3378265 | None:intergenic |
| ATTATCAGATGAAGTCAGGT+TGG | 0.604141 | 5_3:+3370919 | Msa0792240:intron |
| TCCACGATATCACTAACTCC+AGG | 0.605449 | 5_3:+3374494 | None:intergenic |
| TCATCCAATGTATAATGACC+TGG | 0.609349 | 5_3:+3377343 | None:intergenic |
| GATGAAGGTGAAGGATCGGT+CGG | 0.609476 | 5_3:+3378261 | None:intergenic |
| TGGACCCGAACAGTCGTATG+TGG | 0.610001 | 5_3:-3370965 | Msa0792250:CDS |
| CAGCAATTGTCACATGTGGA+GGG | 0.611394 | 5_3:-3375290 | Msa0792250:CDS |
| GGATACAGCGGCATTTCAGT+AGG | 0.611770 | 5_3:-3371050 | Msa0792250:CDS |
| ACATTGGATGAGGAGTGGAA+TGG | 0.612135 | 5_3:-3377331 | Msa0792250:CDS |
| AGATATCAGTAATATGAGGA+AGG | 0.612838 | 5_3:+3377972 | None:intergenic |
| CAATGATAGAGTGCTTCTCA+AGG | 0.614711 | 5_3:-3377296 | Msa0792250:intron |
| ATTATACATTGGATGAGGAG+TGG | 0.617373 | 5_3:-3377336 | Msa0792250:CDS |
| AAGGCAGCAATTGTCACATG+TGG | 0.622549 | 5_3:-3375294 | Msa0792250:CDS |
| AATATCGCATCCCCGATTGG+TGG | 0.629075 | 5_3:-3370985 | Msa0792250:CDS |
| TAGTGCATATCATGGAATTG+GGG | 0.631622 | 5_3:-3373671 | Msa0792250:CDS |
| ATTTGGCTTTGATACTGCAG+TGG | 0.632353 | 5_3:-3373832 | Msa0792250:CDS |
| ATTGTACTTGGGTAGAACAA+TGG | 0.638934 | 5_3:-3376272 | Msa0792250:intron |
| AGCCTGTTGGGAGTTTCACG+AGG | 0.643100 | 5_3:-3374521 | Msa0792250:CDS |
| GAAAATCCACGATAACCGAA+AGG | 0.646686 | 5_3:+3374739 | None:intergenic |
| TGCAAATGCAATTCACAATG+AGG | 0.654664 | 5_3:-3374309 | Msa0792250:intron |
| CAAAATTTAATGAAATACAC+AGG | 0.656121 | 5_3:-3370594 | Msa0792250:three_prime_UTR |
| GGTGCATTTGCAGGATACAG+CGG | 0.660464 | 5_3:-3371062 | Msa0792250:CDS |
| TGATGACATCATTAAGACCA+GGG | 0.677608 | 5_3:+3375262 | None:intergenic |
| CTGTTCGGGTCCACCAATCG+GGG | 0.681048 | 5_3:+3370975 | Msa0792240:CDS |
| CTGTTGGGAGTTTCACGAGG+AGG | 0.684746 | 5_3:-3374518 | Msa0792250:CDS |
| TGACGTATGTCTGATTCCCG+AGG | 0.684919 | 5_3:-3373581 | Msa0792250:intron |
| GGGGATGCGATATTACTTCG+GGG | 0.704257 | 5_3:+3370994 | Msa0792240:CDS |
| GTTCTACCCAAGTACAATCG+GGG | 0.709838 | 5_3:+3376277 | None:intergenic |
| AATGTGAGAGATGAAGGTGA+AGG | 0.742926 | 5_3:+3378252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTGACTTAGTTATGATATCG+AGG | + | chr5_3:3370576-3370595 | Msa0792240:intron | 30.0% | |
| AAGGTGAAGGATCGGTCGGA+AGG | + | chr5_3:3370644-3370663 | Msa0792240:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 3370566 | 3378362 | 3370566 | ID=Msa0792250;Name=Msa0792250 |
| chr5_3 | mRNA | 3370566 | 3378362 | 3370566 | ID=Msa0792250-mRNA-1;Parent=Msa0792250;Name=Msa0792250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=432|0.90|1|1|1|1|12|357|396 |
| chr5_3 | exon | 3370566 | 3371090 | 3370566 | ID=Msa0792250-mRNA-1:exon:1501;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3372019 | 3372147 | 3372019 | ID=Msa0792250-mRNA-1:exon:1500;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3372652 | 3372732 | 3372652 | ID=Msa0792250-mRNA-1:exon:1499;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3373582 | 3373698 | 3373582 | ID=Msa0792250-mRNA-1:exon:1498;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3373794 | 3373934 | 3373794 | ID=Msa0792250-mRNA-1:exon:1497;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3374310 | 3374384 | 3374310 | ID=Msa0792250-mRNA-1:exon:1496;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3374484 | 3374585 | 3374484 | ID=Msa0792250-mRNA-1:exon:1495;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3374714 | 3374809 | 3374714 | ID=Msa0792250-mRNA-1:exon:1494;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3375257 | 3375368 | 3375257 | ID=Msa0792250-mRNA-1:exon:1493;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3376273 | 3376346 | 3376273 | ID=Msa0792250-mRNA-1:exon:1492;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3377297 | 3377387 | 3377297 | ID=Msa0792250-mRNA-1:exon:1491;Parent=Msa0792250-mRNA-1 |
| chr5_3 | exon | 3377926 | 3378362 | 3377926 | ID=Msa0792250-mRNA-1:exon:1490;Parent=Msa0792250-mRNA-1 |
| chr5_3 | five_prime_UTR | 3377931 | 3378362 | 3377931 | ID=Msa0792250-mRNA-1:five_prime_utr;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3377926 | 3377930 | 3377926 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3377297 | 3377387 | 3377297 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3376273 | 3376346 | 3376273 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3375257 | 3375368 | 3375257 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3374714 | 3374809 | 3374714 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3374484 | 3374585 | 3374484 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3374310 | 3374384 | 3374310 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3373794 | 3373934 | 3373794 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3373582 | 3373698 | 3373582 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3372652 | 3372732 | 3372652 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3372019 | 3372147 | 3372019 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | CDS | 3370923 | 3371090 | 3370923 | ID=Msa0792250-mRNA-1:cds;Parent=Msa0792250-mRNA-1 |
| chr5_3 | three_prime_UTR | 3370566 | 3370922 | 3370566 | ID=Msa0792250-mRNA-1:three_prime_utr;Parent=Msa0792250-mRNA-1 |
| Gene Sequence |
| Protein sequence |