AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0670280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670280 MtrunA17_Chr4g0051521 97.039 439 11 2 1 438 1 438 0.0 875
Msa0670280 MtrunA17_Chr4g0000371 99.357 311 2 0 128 438 5 315 0.0 647
Msa0670280 MtrunA17_Chr4g0051511 79.944 354 9 3 129 435 6 344 0.0 556
Msa0670280 MtrunA17_Chr4g0000381 95.413 109 5 0 1 109 1 109 3.61e-69 215
Msa0670280 MtrunA17_Chr1g0179361 29.365 378 240 8 68 438 12 369 8.11e-42 152
Msa0670280 MtrunA17_Chr4g0051501 86.486 74 8 2 1 73 1 73 3.46e-34 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670280 AT1G50430.1 83.063 431 73 0 8 438 2 432 0.0 759
Msa0670280 AT1G50430.2 83.063 431 72 1 8 438 2 431 0.0 755
Msa0670280 AT3G52940.1 29.921 381 234 9 68 438 12 369 1.14e-48 170
Msa0670280 AT3G52940.2 28.444 225 141 7 68 282 12 226 6.22e-20 89.4

Find 106 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGGGAGATTTCTATTTA+TGG 0.135633 4_4:+12689095 None:intergenic
CTATGCATCTTTACCTTTGA+TGG 0.168728 4_4:+12691088 None:intergenic
GCACCATCTTCTACTGATTC+TGG 0.211719 4_4:-12692939 Msa0670280:CDS
TCTTGATAGTATGAAGAAAA+TGG 0.213254 4_4:-12691812 Msa0670280:intron
TAACATTCGCTTACAAAATA+AGG 0.224015 4_4:+12689178 None:intergenic
AAATATTAGCTGCATTCTTC+TGG 0.228561 4_4:-12690108 Msa0670280:CDS
GCGAATGTTATGATTTAAAA+TGG 0.252269 4_4:-12689165 Msa0670280:three_prime_UTR
CAGCATAAACAGCTATAATT+TGG 0.256261 4_4:+12694865 None:intergenic
AACAATCGTTTATGATCATT+TGG 0.260995 4_4:-12693125 Msa0670280:CDS
TCACTTCAGCTTCTTCTTCC+TGG 0.263974 4_4:-12694831 Msa0670280:CDS
AAGAATGCAGCTAATATTTC+GGG 0.270796 4_4:+12690112 None:intergenic
CTTCCTGGTCAAACTGTTTA+CGG 0.284937 4_4:-12694816 Msa0670280:CDS
TTGCTGGGGCTGTTTGGTTT+GGG 0.285386 4_4:-12691427 Msa0670280:CDS
TTTGCTGGGGCTGTTTGGTT+TGG 0.288712 4_4:-12691428 Msa0670280:CDS
TTTGATTATTTAAACAATAA+TGG 0.292208 4_4:-12694936 Msa0670280:CDS
GAAGAATGCAGCTAATATTT+CGG 0.298216 4_4:+12690111 None:intergenic
TTATATTTGCTGGGGCTGTT+TGG 0.304151 4_4:-12691433 Msa0670280:CDS
TCTGGTGGGAAGCTGGATAC+TGG 0.304373 4_4:-12691727 Msa0670280:CDS
ACAATCGTTTATGATCATTT+GGG 0.320331 4_4:-12693124 Msa0670280:CDS
CGGTAACCGCCCTGTCTATA+AGG 0.331256 4_4:-12694778 Msa0670280:intron
AATGATGTCATGGGCTGTTC+TGG 0.333436 4_4:-12692304 Msa0670280:CDS
GCCTCATATACCACTGCTTC+CGG 0.355351 4_4:-12690934 Msa0670280:CDS
GTTAGTAAGAAGATCGAAAA+TGG 0.358318 4_4:-12695202 Msa0670280:exon
CGGTTACCGGTAGGAGAAAT+AGG 0.360461 4_4:+12694792 None:intergenic
TGAGGGAGATTTCTATTTAT+GGG 0.364154 4_4:+12689096 None:intergenic
CCTCATATACCACTGCTTCC+GGG 0.368880 4_4:-12690933 Msa0670280:CDS
TTTGTATTTCTTCAGGCAAA+TGG 0.379608 4_4:-12694257 Msa0670280:intron
TATATTCCACACTCAACTTT+GGG 0.397950 4_4:-12693096 Msa0670280:CDS
TGCTGCATATTTAGTTACTT+TGG 0.407451 4_4:-12694231 Msa0670280:CDS
CTTGATAGTATGAAGAAAAT+GGG 0.409251 4_4:-12691811 Msa0670280:intron
AATGATCATAAACGATTGTT+GGG 0.411459 4_4:+12693128 None:intergenic
AAATGATCATAAACGATTGT+TGG 0.417130 4_4:+12693127 None:intergenic
CTTATAGACAGGGCGGTTAC+CGG 0.418802 4_4:+12694779 None:intergenic
ATATATTCCACACTCAACTT+TGG 0.422367 4_4:-12693097 Msa0670280:CDS
TTATATTTGATAGGGTCATT+TGG 0.422502 4_4:-12692961 Msa0670280:intron
AGTCATCATCAATATATTCC+TGG 0.424853 4_4:+12689318 None:intergenic
AGAAATATCACGTAGAAGTA+AGG 0.430755 4_4:+12689975 None:intergenic
AAAGCTAGAAGTGTTGGTTT+AGG 0.432868 4_4:+12694888 None:intergenic
GTCAACCATCCAGTGAATCT+TGG 0.433126 4_4:-12691369 Msa0670280:CDS
CAAGAGTTTCGTAGGACAAA+TGG 0.441736 4_4:-12691136 Msa0670280:CDS
TTACTTACATTGCACTTTGG+CGG 0.449956 4_4:-12694208 Msa0670280:intron
CTTACGTGATTGAATAGAGC+TGG 0.458940 4_4:+12690079 None:intergenic
TATATTGATGATGACTTGTC+TGG 0.471587 4_4:-12689311 Msa0670280:exon
GTACCTTACAGAATCATTCC+AGG 0.476122 4_4:-12689336 Msa0670280:CDS
GTTTACCATTGCATCTTAAG+TGG 0.477376 4_4:+12689235 None:intergenic
CCATCAGTGTATACATCTCC+TGG 0.477762 4_4:-12691402 Msa0670280:CDS
CCCGGAAGCAGTGGTATATG+AGG 0.482468 4_4:+12690933 None:intergenic
TACGGTCCTATTTCTCCTAC+CGG 0.485371 4_4:-12694798 Msa0670280:CDS
ATTTGGAAAGCTAGAAGTGT+TGG 0.486102 4_4:+12694882 None:intergenic
ACCTGGGTGCCAAGATTCAC+TGG 0.487320 4_4:+12691360 None:intergenic
TGGTTGACAAGGTACATTCC+AGG 0.489773 4_4:+12691384 None:intergenic
CTTGACAGAATTCTCCTCCA+TGG 0.491036 4_4:-12689068 Msa0670280:three_prime_UTR
TTAAACAATAATGGTTTACA+AGG 0.495899 4_4:-12694927 Msa0670280:CDS
CATGGCAGCAAGTGAAGGAT+AGG 0.502904 4_4:+12689285 None:intergenic
GACACACAGACCTTATAGAC+AGG 0.514299 4_4:+12694768 None:intergenic
ATTCCTGGAATGATTCTGTA+AGG 0.518813 4_4:+12689333 None:intergenic
ATGGTTTACGATGACGGCTA+TGG 0.519049 4_4:-12694979 Msa0670280:CDS
CATGCAGGTATGGAAAGTAC+TGG 0.526601 4_4:-12689377 Msa0670280:intron
CCAGGAGATGTATACACTGA+TGG 0.529275 4_4:+12691402 None:intergenic
ACTATGATTGTGACAGGCAA+AGG 0.530436 4_4:-12691159 Msa0670280:CDS
ATGAAGATGGTTTACGATGA+CGG 0.530950 4_4:-12694985 Msa0670280:intron
ACTGGAAACTCTATTGCGAC+AGG 0.531995 4_4:-12689359 Msa0670280:CDS
TGTAAATACTACATTAATGC+TGG 0.542689 4_4:-12691768 Msa0670280:CDS
TCTACTGATTCTGGTTCAAG+TGG 0.545372 4_4:-12692930 Msa0670280:CDS
ATGGAGCTCTATCCACGCAT+TGG 0.545997 4_4:-12692369 Msa0670280:CDS
GAGTGGTGAATGTACTGTTT+CGG 0.546974 4_4:+12695161 None:intergenic
ACATCAACTATGATTGTGAC+AGG 0.553357 4_4:-12691165 Msa0670280:CDS
TTACGTGATTGAATAGAGCT+GGG 0.555286 4_4:+12690080 None:intergenic
CTCATATACCACTGCTTCCG+GGG 0.558627 4_4:-12690932 Msa0670280:CDS
CAATCGTTTATGATCATTTG+GGG 0.573140 4_4:-12693123 Msa0670280:CDS
TTCTGCCACTTAAGATGCAA+TGG 0.573566 4_4:-12689240 Msa0670280:three_prime_UTR
AGTCGAAGACGCTAAGTCGT+AGG 0.577282 4_4:-12695226 Msa0670280:five_prime_UTR
GTAAACATGGCAGCAAGTGA+AGG 0.580459 4_4:+12689280 None:intergenic
GCAGATTTGGAATGATGTCA+TGG 0.581369 4_4:-12692314 Msa0670280:CDS
AGTCCTCGTATATATGAGCT+AGG 0.581749 4_4:-12689045 Msa0670280:three_prime_UTR
TGGTTACTTACATTGCACTT+TGG 0.584119 4_4:-12694211 Msa0670280:CDS
TCCAGTGAATCTTGGCACCC+AGG 0.587162 4_4:-12691361 Msa0670280:intron
GAACCAGAATCAGTAGAAGA+TGG 0.593438 4_4:+12692936 None:intergenic
TACAGTAGATTGACGAAAGG+AGG 0.597491 4_4:+12695099 None:intergenic
TTTACGATGACGGCTATGGA+TGG 0.598888 4_4:-12694975 Msa0670280:CDS
ACCATCCAGAGGTTAAAAGA+AGG 0.603425 4_4:+12690896 None:intergenic
CTCAACCTGCTTTATGCAGT+AGG 0.603786 4_4:+12692275 None:intergenic
ATGGATATTGCACACGATCG+AGG 0.603895 4_4:-12691698 Msa0670280:intron
TCATATATACGAGGACTCCA+TGG 0.612699 4_4:+12689051 None:intergenic
CTGGGGAAAAGCTCCATCAA+AGG 0.613205 4_4:-12691101 Msa0670280:intron
ACTTACCTACTGCATAAAGC+AGG 0.622001 4_4:-12692280 Msa0670280:intron
ACTTACAGTAGATTGACGAA+AGG 0.623164 4_4:+12695096 None:intergenic
CTACTGATTCTGGTTCAAGT+GGG 0.624307 4_4:-12692929 Msa0670280:CDS
AGTAAGAAGATCGAAAATGG+TGG 0.624363 4_4:-12695199 Msa0670280:exon
AAAGCTCCCAAAGTTGAGTG+TGG 0.627248 4_4:+12693090 None:intergenic
GGCAAAGGCAAGAGTTTCGT+AGG 0.627927 4_4:-12691144 Msa0670280:CDS
GGGTGCCAAGATTCACTGGA+TGG 0.644744 4_4:+12691364 None:intergenic
CAGATTTGGAATGATGTCAT+GGG 0.645422 4_4:-12692313 Msa0670280:CDS
AAGGGATACGTACCATCCAG+AGG 0.650541 4_4:+12690885 None:intergenic
GGACCGTAAACAGTTTGACC+AGG 0.651599 4_4:+12694813 None:intergenic
GATTCACTGGATGGTTGACA+AGG 0.654390 4_4:+12691373 None:intergenic
TAGACAGGGCGGTTACCGGT+AGG 0.656132 4_4:+12694783 None:intergenic
CTGGAAACTCTATTGCGACA+GGG 0.658826 4_4:-12689358 Msa0670280:CDS
AATCGTTTATGATCATTTGG+GGG 0.662804 4_4:-12693122 Msa0670280:CDS
ATAGAAGCATATGTGACGAG+TGG 0.675409 4_4:+12695144 None:intergenic
ACACACAGACCTTATAGACA+GGG 0.685969 4_4:+12694769 None:intergenic
AGCTGGATACTGGAACACGA+TGG 0.692506 4_4:-12691717 Msa0670280:CDS
ATTCCTAGCTCATATATACG+AGG 0.721276 4_4:+12689042 None:intergenic
AGAATGCAGCTAATATTTCG+GGG 0.723462 4_4:+12690113 None:intergenic
TATATACGAGGACTCCATGG+AGG 0.724414 4_4:+12689054 None:intergenic
CACAGACCTTATAGACAGGG+CGG 0.753720 4_4:+12694772 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATTATTTAAACAATAA+TGG - chr4_4:12689437-12689456 Msa0670280:intron 10.0%
!!! AACCAATTTTTTTTTTTTTT+TGG - chr4_4:12689769-12689788 Msa0670280:intron 10.0%
!! AACCAAAAAAAAAAAAAAAT+TGG + chr4_4:12689774-12689793 None:intergenic 10.0%
!! AAATGAAAAATCAATTTAAT+CGG + chr4_4:12690410-12690429 None:intergenic 10.0%
!!! CAAAAATATAATGTTTTTAA+GGG + chr4_4:12693509-12693528 None:intergenic 10.0%
!!! TCAAAAATATAATGTTTTTA+AGG + chr4_4:12693510-12693529 None:intergenic 10.0%
!! AATATATATTATGAGATTAA+GGG + chr4_4:12694124-12694143 None:intergenic 10.0%
!! AAATATATATTATGAGATTA+AGG + chr4_4:12694125-12694144 None:intergenic 10.0%
!! TTCTTATCTTATTAATTGAA+AGG - chr4_4:12690192-12690211 Msa0670280:intron 15.0%
!!! TTATTTTCTGAAATAATTAC+AGG + chr4_4:12690287-12690306 None:intergenic 15.0%
!! AAAAAAAATTCAAAAGTAGA+TGG + chr4_4:12692319-12692338 None:intergenic 15.0%
!! ATATGAATCATATTTATATG+TGG - chr4_4:12692373-12692392 Msa0670280:CDS 15.0%
!! TGAAAAGAATATTAGAAATA+AGG + chr4_4:12693098-12693117 None:intergenic 15.0%
!!! TTAGCAATAATATTTCTATA+TGG + chr4_4:12693662-12693681 None:intergenic 15.0%
!! AAACAATAGTTTATACATTT+AGG - chr4_4:12693710-12693729 Msa0670280:intron 15.0%
!! AACAATAGTTTATACATTTA+GGG - chr4_4:12693711-12693730 Msa0670280:intron 15.0%
!! GAAAAAATAAAAAAGTTGTT+TGG - chr4_4:12693780-12693799 Msa0670280:intron 15.0%
!!! TGATTTTTAAAAACAGTTTT+AGG + chr4_4:12693995-12694014 None:intergenic 15.0%
!!! ATATATTTGATTTTTCTACT+TGG - chr4_4:12694137-12694156 Msa0670280:intron 15.0%
!! AAGTGTATATATTACAATTT+AGG + chr4_4:12694762-12694781 None:intergenic 15.0%
!!! CACAATGTTTGTTTATTTTT+GGG + chr4_4:12689055-12689074 None:intergenic 20.0%
!!! ACACAATGTTTGTTTATTTT+TGG + chr4_4:12689056-12689075 None:intergenic 20.0%
!! TTAAACAATAATGGTTTACA+AGG - chr4_4:12689446-12689465 Msa0670280:intron 20.0%
!!! ATTGATTTTTCATTTCATCT+TGG - chr4_4:12690415-12690434 Msa0670280:intron 20.0%
!!! TATCCTTTTAAATTTCACTT+TGG - chr4_4:12690675-12690694 Msa0670280:intron 20.0%
!! TCAAACAATTTCTTCTAATA+TGG + chr4_4:12691861-12691880 None:intergenic 20.0%
!!! CGTTTTTTTATATGAATAAC+AGG - chr4_4:12691905-12691924 Msa0670280:intron 20.0%
!! AACTACAAATAGGTATTTAA+AGG + chr4_4:12692214-12692233 None:intergenic 20.0%
!! GAAATATTATTGCTAACTAT+AGG - chr4_4:12693666-12693685 Msa0670280:intron 20.0%
!!! TTTTAAAAAGTGAATCAAAC+AGG + chr4_4:12693737-12693756 None:intergenic 20.0%
!! AAGTTAAAGAAAATTACGTT+TGG + chr4_4:12694023-12694042 None:intergenic 20.0%
!! TAAACAAAAATAGGTAAACA+TGG + chr4_4:12695109-12695128 None:intergenic 20.0%
! TGAATTGAATTGAATGAAGA+TGG - chr4_4:12689375-12689394 Msa0670280:intron 25.0%
!!! TACAAGGTTTTGTTAATCTA+TGG - chr4_4:12689462-12689481 Msa0670280:intron 25.0%
!! TTTTTGTCTTATACGATGTT+TGG + chr4_4:12689871-12689890 None:intergenic 25.0%
! TCTATGTGTTACGATTTAAT+TGG - chr4_4:12689990-12690009 Msa0670280:intron 25.0%
! AGAAAAGTAACAAAGAAGAT+AGG - chr4_4:12690215-12690234 Msa0670280:intron 25.0%
! AAAGAAAAGAAAATTGGCAT+AGG - chr4_4:12690515-12690534 Msa0670280:intron 25.0%
! ATAAGACTTTGTATGATCTT+AGG - chr4_4:12690572-12690591 Msa0670280:intron 25.0%
! CATCCAAAGTGAAATTTAAA+AGG + chr4_4:12690681-12690700 None:intergenic 25.0%
! TGTTCTGTGTTTATGAAAAT+TGG - chr4_4:12690699-12690718 Msa0670280:intron 25.0%
! CTTCATAGATAATGTATGAT+GGG - chr4_4:12690950-12690969 Msa0670280:intron 25.0%
! ATAAAGCCTTGAAATTCAAA+AGG + chr4_4:12691038-12691057 None:intergenic 25.0%
! CTTTATGAAGATAGGTTTAT+AGG - chr4_4:12691052-12691071 Msa0670280:intron 25.0%
!! AATTTTTGCATGTATGTTTC+AGG - chr4_4:12691208-12691227 Msa0670280:CDS 25.0%
! AATGATCATAAACGATTGTT+GGG + chr4_4:12691248-12691267 None:intergenic 25.0%
! AAATGATCATAAACGATTGT+TGG + chr4_4:12691249-12691268 None:intergenic 25.0%
! AACAATCGTTTATGATCATT+TGG - chr4_4:12691248-12691267 Msa0670280:intron 25.0%
! ACAATCGTTTATGATCATTT+GGG - chr4_4:12691249-12691268 Msa0670280:intron 25.0%
! AAATTCAATGTAAATTGCAC+AGG + chr4_4:12691379-12691398 None:intergenic 25.0%
! ACTCAAGTGTTATATTTGAT+AGG - chr4_4:12691403-12691422 Msa0670280:CDS 25.0%
! CTCAAGTGTTATATTTGATA+GGG - chr4_4:12691404-12691423 Msa0670280:CDS 25.0%
! TTATATTTGATAGGGTCATT+TGG - chr4_4:12691412-12691431 Msa0670280:CDS 25.0%
!!! ACATAATCATCGATTTTTAC+TGG - chr4_4:12691468-12691487 Msa0670280:intron 25.0%
!!! CATAATCATCGATTTTTACT+GGG - chr4_4:12691469-12691488 Msa0670280:intron 25.0%
! TTCTTACCATTTATTTGCAT+TGG - chr4_4:12691507-12691526 Msa0670280:intron 25.0%
! CAATTTCCAATGCAAATAAA+TGG + chr4_4:12691516-12691535 None:intergenic 25.0%
!! AGAAATGTTTCAACGTTTTA+TGG - chr4_4:12691817-12691836 Msa0670280:intron 25.0%
! CATATAAAAAAACGTCTCAA+GGG + chr4_4:12691899-12691918 None:intergenic 25.0%
! TCATATAAAAAAACGTCTCA+AGG + chr4_4:12691900-12691919 None:intergenic 25.0%
! GTTGAGATCTAATTTATGAT+AGG - chr4_4:12692349-12692368 Msa0670280:CDS 25.0%
! ATCTTACTAGTATATGAATC+AGG - chr4_4:12692463-12692482 Msa0670280:intron 25.0%
! ACAATAGAGAATTAACCAAA+GGG + chr4_4:12692530-12692549 None:intergenic 25.0%
! AACAATAGAGAATTAACCAA+AGG + chr4_4:12692531-12692550 None:intergenic 25.0%
!! TCTTGATAGTATGAAGAAAA+TGG - chr4_4:12692561-12692580 Msa0670280:intron 25.0%
!! CTTGATAGTATGAAGAAAAT+GGG - chr4_4:12692562-12692581 Msa0670280:intron 25.0%
! TGTAAATACTACATTAATGC+TGG - chr4_4:12692605-12692624 Msa0670280:intron 25.0%
! TAAATGAAATCCAGTTGTTA+TGG + chr4_4:12692824-12692843 None:intergenic 25.0%
! TGGATTTCATTTATCATGTT+TGG - chr4_4:12692831-12692850 Msa0670280:intron 25.0%
! TAGAAATAAGGAAAACTTTG+AGG + chr4_4:12693086-12693105 None:intergenic 25.0%
!! TTTCCCCTTTTTATGAAAAT+TGG - chr4_4:12693129-12693148 Msa0670280:CDS 25.0%
!! AAGCCAATTTTCATAAAAAG+GGG + chr4_4:12693135-12693154 None:intergenic 25.0%
!! GAAGCCAATTTTCATAAAAA+GGG + chr4_4:12693136-12693155 None:intergenic 25.0%
!! AGAAGCCAATTTTCATAAAA+AGG + chr4_4:12693137-12693156 None:intergenic 25.0%
! TAAAGATGCATAGAATATAC+TGG - chr4_4:12693295-12693314 Msa0670280:intron 25.0%
! TATATAATGCAAGTCAGATT+GGG - chr4_4:12693355-12693374 Msa0670280:intron 25.0%
! ACTAAGTTGTTGTAATGATT+GGG - chr4_4:12693553-12693572 Msa0670280:intron 25.0%
!! GCAATAATATTTCTATATGG+AGG + chr4_4:12693659-12693678 None:intergenic 25.0%
!!! GTAGTTTTGCTTTTCAATTT+TGG - chr4_4:12693884-12693903 Msa0670280:intron 25.0%
!!! TGGTTTTGAAAACAAGAAAA+AGG - chr4_4:12693904-12693923 Msa0670280:intron 25.0%
!!! TTTTGAAAACAAGAAAAAGG+CGG - chr4_4:12693907-12693926 Msa0670280:intron 25.0%
! CAATTGCCATTAATGAAAAA+TGG + chr4_4:12693941-12693960 None:intergenic 25.0%
!! ATGTTCTCTAAGAAAATGTT+AGG + chr4_4:12694163-12694182 None:intergenic 25.0%
! GATAGAAAATAATGCTTACT+TGG + chr4_4:12694474-12694493 None:intergenic 25.0%
! TTAAAGCTTCAACAAAATCA+TGG + chr4_4:12694658-12694677 None:intergenic 25.0%
! TATATTACAATTTAGGCTGT+TGG + chr4_4:12694755-12694774 None:intergenic 25.0%
! TCATATCTATAGAAAACCAA+CGG - chr4_4:12694788-12694807 Msa0670280:CDS 25.0%
! GAATTGTATATTTCAGAAAC+AGG + chr4_4:12694837-12694856 None:intergenic 25.0%
! TAACATTCGCTTACAAAATA+AGG + chr4_4:12695198-12695217 None:intergenic 25.0%
! GCGAATGTTATGATTTAAAA+TGG - chr4_4:12695208-12695227 Msa0670280:five_prime_UTR 25.0%
! AATTCTGTCAAGAAAAATGA+GGG + chr4_4:12695297-12695316 None:intergenic 25.0%
GTTAGTAAGAAGATCGAAAA+TGG - chr4_4:12689171-12689190 Msa0670280:three_prime_UTR 30.0%
CAGCATAAACAGCTATAATT+TGG + chr4_4:12689511-12689530 None:intergenic 30.0%
TGAAAATAAAAGTTGTGCTG+TGG + chr4_4:12689807-12689826 None:intergenic 30.0%
! CACACAAAGACAAACTTTTA+TGG + chr4_4:12689906-12689925 None:intergenic 30.0%
AGTGTGTTTGATCTACTAAA+AGG + chr4_4:12689971-12689990 None:intergenic 30.0%
ATGTGTTACGATTTAATTGG+AGG - chr4_4:12689993-12690012 Msa0670280:intron 30.0%
TTTGTATTTCTTCAGGCAAA+TGG - chr4_4:12690116-12690135 Msa0670280:CDS 30.0%
TGCTGCATATTTAGTTACTT+TGG - chr4_4:12690142-12690161 Msa0670280:CDS 30.0%
! TTGAATGTATTGACATCTGT+CGG - chr4_4:12690312-12690331 Msa0670280:intron 30.0%
ATTCAATAAGTTTCAGTGCT+AGG - chr4_4:12690365-12690384 Msa0670280:intron 30.0%
TTCAATAAGTTTCAGTGCTA+GGG - chr4_4:12690366-12690385 Msa0670280:intron 30.0%
TCTTTGTGGGAAGAATATAA+TGG + chr4_4:12690500-12690519 None:intergenic 30.0%
TCCCACAAAGAAAAGAAAAT+TGG - chr4_4:12690509-12690528 Msa0670280:intron 30.0%
! GCCAATTTTCTTTTCTTTGT+GGG + chr4_4:12690513-12690532 None:intergenic 30.0%
! TGCCAATTTTCTTTTCTTTG+TGG + chr4_4:12690514-12690533 None:intergenic 30.0%
ACATAATATTGATGTCTTCC+AGG - chr4_4:12690548-12690567 Msa0670280:intron 30.0%
!! ATCATACAAAGTCTTATTCC+TGG + chr4_4:12690569-12690588 None:intergenic 30.0%
! TGATCTTAGGTTGTCATATA+TGG - chr4_4:12690585-12690604 Msa0670280:intron 30.0%
GTGTTTATGAAAATTGGCAT+AGG - chr4_4:12690705-12690724 Msa0670280:intron 30.0%
GCTTCATAGATAATGTATGA+TGG - chr4_4:12690949-12690968 Msa0670280:intron 30.0%
! GGTTATCCTTTTGAATTTCA+AGG - chr4_4:12691029-12691048 Msa0670280:intron 30.0%
! TTTCAAGGCTTTATGAAGAT+AGG - chr4_4:12691044-12691063 Msa0670280:intron 30.0%
! ATTTTCCTTACAAAGCAAGA+TGG - chr4_4:12691148-12691167 Msa0670280:CDS 30.0%
CAATCGTTTATGATCATTTG+GGG - chr4_4:12691250-12691269 Msa0670280:intron 30.0%
AATCGTTTATGATCATTTGG+GGG - chr4_4:12691251-12691270 Msa0670280:intron 30.0%
ATATATTCCACACTCAACTT+TGG - chr4_4:12691276-12691295 Msa0670280:intron 30.0%
TATATTCCACACTCAACTTT+GGG - chr4_4:12691277-12691296 Msa0670280:intron 30.0%
AAAATCTCTCGTCTGATTAT+TGG - chr4_4:12691605-12691624 Msa0670280:intron 30.0%
! GAGAATTTTCCATGCATTAT+CGG + chr4_4:12691711-12691730 None:intergenic 30.0%
!! ACCAATCCTTTTGTTTAAAC+TGG - chr4_4:12691739-12691758 Msa0670280:CDS 30.0%
ACCAGTTTAAACAAAAGGAT+TGG + chr4_4:12691743-12691762 None:intergenic 30.0%
GTCAAACCAGTTTAAACAAA+AGG + chr4_4:12691748-12691767 None:intergenic 30.0%
GAATTTCAAAGTTCACATAG+TGG + chr4_4:12691790-12691809 None:intergenic 30.0%
!!! CACCTTTTTTCCATAAATGA+CGG - chr4_4:12691951-12691970 Msa0670280:intron 30.0%
AAGAATGACAGAAAGTTAGA+AGG + chr4_4:12691977-12691996 None:intergenic 30.0%
! TCAAAATATTTTCCAATGCG+TGG + chr4_4:12692019-12692038 None:intergenic 30.0%
AGTATCAGCAAACTACAAAT+AGG + chr4_4:12692224-12692243 None:intergenic 30.0%
! TTTAACTTCCTTAGTTGCTT+TGG - chr4_4:12692396-12692415 Msa0670280:intron 30.0%
TACTAGTAAGATCATGTTCA+TGG + chr4_4:12692455-12692474 None:intergenic 30.0%
! TGTATGTTACCAAGTTTTTC+TGG - chr4_4:12692628-12692647 Msa0670280:intron 30.0%
! AGCTGGATTTTATATTTGCT+GGG - chr4_4:12692931-12692950 Msa0670280:CDS 30.0%
CTGGATTACTATTTGTCATT+TGG - chr4_4:12693314-12693333 Msa0670280:intron 30.0%
CTATATAATGCAAGTCAGAT+TGG - chr4_4:12693354-12693373 Msa0670280:intron 30.0%
CACTAAGTTGTTGTAATGAT+TGG - chr4_4:12693552-12693571 Msa0670280:intron 30.0%
!! CACATTTTAAGTCAAATGTC+AGG + chr4_4:12693612-12693631 None:intergenic 30.0%
!!! ATGGTGCCATTTTTCATTAA+TGG - chr4_4:12693932-12693951 Msa0670280:intron 30.0%
AAGAATGCAGCTAATATTTC+GGG + chr4_4:12694264-12694283 None:intergenic 30.0%
GAAGAATGCAGCTAATATTT+CGG + chr4_4:12694265-12694284 None:intergenic 30.0%
AAATATTAGCTGCATTCTTC+TGG - chr4_4:12694265-12694284 Msa0670280:intron 30.0%
AGAAATATCACGTAGAAGTA+AGG + chr4_4:12694401-12694420 None:intergenic 30.0%
! TTTTTGCTCGATCAAAAAGA+AGG + chr4_4:12694430-12694449 None:intergenic 30.0%
! TTCTTTTTGATCGAGCAAAA+AGG - chr4_4:12694429-12694448 Msa0670280:intron 30.0%
! TCTTTTTGATCGAGCAAAAA+GGG - chr4_4:12694430-12694449 Msa0670280:intron 30.0%
!! TTAGTGTTGCTTATAGTTCT+TGG - chr4_4:12694496-12694515 Msa0670280:intron 30.0%
! AAAGTTTGCTTTATGAGTCA+TGG - chr4_4:12694585-12694604 Msa0670280:intron 30.0%
! ACTTTTTGCTAAAATCACAG+TGG - chr4_4:12694683-12694702 Msa0670280:intron 30.0%
GATGATAAGTTTGACAGAAT+CGG + chr4_4:12694713-12694732 None:intergenic 30.0%
AATTCTTTATTGCATTGCAG+TGG + chr4_4:12694866-12694885 None:intergenic 30.0%
CATGAAATTTCATATTCCAC+TGG + chr4_4:12694932-12694951 None:intergenic 30.0%
CAGTGGAATATGAAATTTCA+TGG - chr4_4:12694930-12694949 Msa0670280:CDS 30.0%
AGTCATCATCAATATATTCC+TGG + chr4_4:12695058-12695077 None:intergenic 30.0%
!! TATATTGATGATGACTTGTC+TGG - chr4_4:12695062-12695081 Msa0670280:intron 30.0%
CAGAAGCAGTAAACAAAAAT+AGG + chr4_4:12695118-12695137 None:intergenic 30.0%
TGAGGGAGATTTCTATTTAT+GGG + chr4_4:12695280-12695299 None:intergenic 30.0%
ATGAGGGAGATTTCTATTTA+TGG + chr4_4:12695281-12695300 None:intergenic 30.0%
GAATTCTGTCAAGAAAAATG+AGG + chr4_4:12695298-12695317 None:intergenic 30.0%
AGTAAGAAGATCGAAAATGG+TGG - chr4_4:12689174-12689193 Msa0670280:three_prime_UTR 35.0%
ACTTACAGTAGATTGACGAA+AGG + chr4_4:12689280-12689299 None:intergenic 35.0%
ATGAAGATGGTTTACGATGA+CGG - chr4_4:12689388-12689407 Msa0670280:intron 35.0%
!! AAAGCTAGAAGTGTTGGTTT+AGG + chr4_4:12689488-12689507 None:intergenic 35.0%
! ATTTGGAAAGCTAGAAGTGT+TGG + chr4_4:12689494-12689513 None:intergenic 35.0%
GTCGTTGTTTGTATTTCTTC+AGG - chr4_4:12690109-12690128 Msa0670280:CDS 35.0%
TGGTTACTTACATTGCACTT+TGG - chr4_4:12690162-12690181 Msa0670280:intron 35.0%
TTACTTACATTGCACTTTGG+CGG - chr4_4:12690165-12690184 Msa0670280:intron 35.0%
AGAAGACTAGCAATGACTAA+TGG + chr4_4:12690647-12690666 None:intergenic 35.0%
!! TCATTGCTAGTCTTCTCAAT+TGG - chr4_4:12690651-12690670 Msa0670280:intron 35.0%
! TGATCAAAATTTTCCCAGTG+TGG - chr4_4:12690879-12690898 Msa0670280:intron 35.0%
! CATAGATAATGTATGATGGG+TGG - chr4_4:12690953-12690972 Msa0670280:intron 35.0%
!! GTATGATGGGTGGATATATT+TGG - chr4_4:12690963-12690982 Msa0670280:intron 35.0%
! TCATTGCTAGTCTACTCAAT+TGG - chr4_4:12691008-12691027 Msa0670280:intron 35.0%
!! TTGCATGTATGTTTCAGGTT+TGG - chr4_4:12691213-12691232 Msa0670280:intron 35.0%
!! TGCATGTATGTTTCAGGTTT+GGG - chr4_4:12691214-12691233 Msa0670280:intron 35.0%
AAGAAAGAGAATGTGAACGA+TGG - chr4_4:12691549-12691568 Msa0670280:intron 35.0%
TTGCATCAATGATCCTCTAA+AGG + chr4_4:12691638-12691657 None:intergenic 35.0%
!! GAGGCGGTAATTTTAAAGAA+AGG + chr4_4:12691665-12691684 None:intergenic 35.0%
! TTCTTGGTTTAGAATGAGAG+AGG + chr4_4:12691684-12691703 None:intergenic 35.0%
TCTCTCATTCTAAACCAAGA+AGG - chr4_4:12691683-12691702 Msa0670280:intron 35.0%
TCACATAGTGGCATTATGAA+CGG + chr4_4:12691778-12691797 None:intergenic 35.0%
GAATTAAACTCCACATGTCT+AGG + chr4_4:12691931-12691950 None:intergenic 35.0%
CGTCATTTATGGAAAAAAGG+TGG + chr4_4:12691953-12691972 None:intergenic 35.0%
TAACTTTCTGTCATTCTTGC+AGG - chr4_4:12691979-12691998 Msa0670280:intron 35.0%
AACTTTCTGTCATTCTTGCA+GGG - chr4_4:12691980-12691999 Msa0670280:intron 35.0%
! GTTTTCACAAACTGCAGATT+TGG - chr4_4:12692046-12692065 Msa0670280:intron 35.0%
! CAGATTTGGAATGATGTCAT+GGG - chr4_4:12692060-12692079 Msa0670280:intron 35.0%
! TTTTCCAACTAAATGCTGGA+TGG + chr4_4:12692177-12692196 None:intergenic 35.0%
! TGTGTTTTCCAACTAAATGC+TGG + chr4_4:12692181-12692200 None:intergenic 35.0%
!! AGGTTCAAACTGTTTCTACA+AGG + chr4_4:12692248-12692267 None:intergenic 35.0%
TTGTAGAAACAGTTTGAACC+TGG - chr4_4:12692247-12692266 Msa0670280:intron 35.0%
TGTAGAAACAGTTTGAACCT+GGG - chr4_4:12692248-12692267 Msa0670280:intron 35.0%
TAGTAAGATCATGTTCATGG+AGG + chr4_4:12692452-12692471 None:intergenic 35.0%
TTTGTGAAATTTCCACCCTT+TGG - chr4_4:12692512-12692531 Msa0670280:intron 35.0%
ATAGAGAATTAACCAAAGGG+TGG + chr4_4:12692527-12692546 None:intergenic 35.0%
! ATGTTACCAAGTTTTTCTGG+TGG - chr4_4:12692631-12692650 Msa0670280:intron 35.0%
!! TGTTACCAAGTTTTTCTGGT+GGG - chr4_4:12692632-12692651 Msa0670280:intron 35.0%
! GTTCTGCTGATATGTTCTTT+TGG - chr4_4:12692749-12692768 Msa0670280:intron 35.0%
TGAAATCCAGTTGTTATGGA+AGG + chr4_4:12692820-12692839 None:intergenic 35.0%
AAATCCAGCTGCAAGATTTA+GGG + chr4_4:12692921-12692940 None:intergenic 35.0%
AAAATCCAGCTGCAAGATTT+AGG + chr4_4:12692922-12692941 None:intergenic 35.0%
! CAGCTGGATTTTATATTTGC+TGG - chr4_4:12692930-12692949 Msa0670280:CDS 35.0%
!! GCTGGATTTTATATTTGCTG+GGG - chr4_4:12692932-12692951 Msa0670280:CDS 35.0%
!!! GCTAGCACTCTTTATTTTAG+TGG - chr4_4:12693167-12693186 Msa0670280:intron 35.0%
ACATCAACTATGATTGTGAC+AGG - chr4_4:12693208-12693227 Msa0670280:intron 35.0%
TAGGACAAATGGAAAAAGCT+TGG - chr4_4:12693248-12693267 Msa0670280:intron 35.0%
AAATGGAAAAAGCTTGGTCT+GGG - chr4_4:12693254-12693273 Msa0670280:intron 35.0%
CTATGCATCTTTACCTTTGA+TGG + chr4_4:12693288-12693307 None:intergenic 35.0%
!!! AGCTTAAGCTCGCTATTTTT+TGG - chr4_4:12693578-12693597 Msa0670280:intron 35.0%
!!! GCTTAAGCTCGCTATTTTTT+GGG - chr4_4:12693579-12693598 Msa0670280:intron 35.0%
!!! CTTAAGCTCGCTATTTTTTG+GGG - chr4_4:12693580-12693599 Msa0670280:intron 35.0%
AGAATGCAGCTAATATTTCG+GGG + chr4_4:12694263-12694282 None:intergenic 35.0%
TTACGTGATTGAATAGAGCT+GGG + chr4_4:12694296-12694315 None:intergenic 35.0%
! ACTGAACTTTTCATTACCAG+TGG - chr4_4:12694913-12694932 Msa0670280:CDS 35.0%
TGAAAATTTCCACTTCATGC+AGG - chr4_4:12694981-12695000 Msa0670280:CDS 35.0%
ATTCCTGGAATGATTCTGTA+AGG + chr4_4:12695043-12695062 None:intergenic 35.0%
GTTTACCATTGCATCTTAAG+TGG + chr4_4:12695141-12695160 None:intergenic 35.0%
ATTCCTAGCTCATATATACG+AGG + chr4_4:12695334-12695353 None:intergenic 35.0%
TTGTGTGTGTGTGTCTATCA+CGG - chr4_4:12689070-12689089 Msa0670280:three_prime_UTR 40.0%
GAGTGGTGAATGTACTGTTT+CGG + chr4_4:12689215-12689234 None:intergenic 40.0%
! ATAGAAGCATATGTGACGAG+TGG + chr4_4:12689232-12689251 None:intergenic 40.0%
TACAGTAGATTGACGAAAGG+AGG + chr4_4:12689277-12689296 None:intergenic 40.0%
CTTCCTGGTCAAACTGTTTA+CGG - chr4_4:12689557-12689576 Msa0670280:intron 40.0%
ACACACAGACCTTATAGACA+GGG + chr4_4:12689607-12689626 None:intergenic 40.0%
AATTGGCATAGGAGATCTCA+CGG - chr4_4:12690716-12690735 Msa0670280:intron 40.0%
! TTGAAGTGTCAGTGCTACAT+AGG + chr4_4:12690792-12690811 None:intergenic 40.0%
! GCACTGACACTTCAAATTGA+AGG - chr4_4:12690797-12690816 Msa0670280:intron 40.0%
!! ATGAAGCATTGACACAGACA+CGG + chr4_4:12690936-12690955 None:intergenic 40.0%
GCAAACCATCTTGCTTTGTA+AGG + chr4_4:12691156-12691175 None:intergenic 40.0%
GAACCAGAATCAGTAGAAGA+TGG + chr4_4:12691440-12691459 None:intergenic 40.0%
!! TCTACTGATTCTGGTTCAAG+TGG - chr4_4:12691443-12691462 Msa0670280:CDS 40.0%
!! CTACTGATTCTGGTTCAAGT+GGG - chr4_4:12691444-12691463 Msa0670280:intron 40.0%
! TTGGTTTAGAATGAGAGAGG+CGG + chr4_4:12691681-12691700 None:intergenic 40.0%
GGCCGTCATTTATGGAAAAA+AGG + chr4_4:12691956-12691975 None:intergenic 40.0%
AGTTAGAAGGCCGTCATTTA+TGG + chr4_4:12691964-12691983 None:intergenic 40.0%
! GCAGATTTGGAATGATGTCA+TGG - chr4_4:12692059-12692078 Msa0670280:intron 40.0%
ACTTACCTACTGCATAAAGC+AGG - chr4_4:12692093-12692112 Msa0670280:intron 40.0%
GTAGAAACAGTTTGAACCTG+GGG - chr4_4:12692249-12692268 Msa0670280:intron 40.0%
CACTGTATCCAAAGCAACTA+AGG + chr4_4:12692407-12692426 None:intergenic 40.0%
! CTTAGTTGCTTTGGATACAG+TGG - chr4_4:12692405-12692424 Msa0670280:intron 40.0%
GAACATATCAGCAGAACGAT+AGG + chr4_4:12692746-12692765 None:intergenic 40.0%
ACCATACCTTCCATAACAAC+TGG - chr4_4:12692811-12692830 Msa0670280:intron 40.0%
TCCAGTTGTTATGGAAGGTA+TGG + chr4_4:12692815-12692834 None:intergenic 40.0%
GATTTAGGGACACGATAAAG+AGG + chr4_4:12692907-12692926 None:intergenic 40.0%
! TTATATTTGCTGGGGCTGTT+TGG - chr4_4:12692940-12692959 Msa0670280:CDS 40.0%
ACAACAGCTCAAACAGGAAT+GGG + chr4_4:12693044-12693063 None:intergenic 40.0%
AACAACAGCTCAAACAGGAA+TGG + chr4_4:12693045-12693064 None:intergenic 40.0%
CACAAAACAACAGCTCAAAC+AGG + chr4_4:12693050-12693069 None:intergenic 40.0%
!!! CTGTTTGAGCTGTTGTTTTG+TGG - chr4_4:12693048-12693067 Msa0670280:intron 40.0%
!!! GCACTCTTTATTTTAGTGGC+TGG - chr4_4:12693171-12693190 Msa0670280:intron 40.0%
ACTATGATTGTGACAGGCAA+AGG - chr4_4:12693214-12693233 Msa0670280:intron 40.0%
CAAGAGTTTCGTAGGACAAA+TGG - chr4_4:12693237-12693256 Msa0670280:intron 40.0%
CAAATGGAAAAAGCTTGGTC+TGG - chr4_4:12693253-12693272 Msa0670280:intron 40.0%
AATGGAAAAAGCTTGGTCTG+GGG - chr4_4:12693255-12693274 Msa0670280:intron 40.0%
!! AAGGCTTCTTTTTGTTTCCC+CGG + chr4_4:12693461-12693480 None:intergenic 40.0%
! AGAAGCCTTCTTTTAACCTC+TGG - chr4_4:12693472-12693491 Msa0670280:intron 40.0%
ACCATCCAGAGGTTAAAAGA+AGG + chr4_4:12693480-12693499 None:intergenic 40.0%
AAACAAGAAAAAGGCGGACA+TGG - chr4_4:12693913-12693932 Msa0670280:intron 40.0%
GGTAGCACAGAAAAGTGAAT+TGG + chr4_4:12694205-12694224 None:intergenic 40.0%
CTTACGTGATTGAATAGAGC+TGG + chr4_4:12694297-12694316 None:intergenic 40.0%
!! GATGACAAAAAGAGCATCTG+TGG + chr4_4:12694550-12694569 None:intergenic 40.0%
GTTTGCTTTATGAGTCATGG+CGG - chr4_4:12694588-12694607 Msa0670280:intron 40.0%
CCAAATCTGGTTGAAACAGT+AGG + chr4_4:12694814-12694833 None:intergenic 40.0%
CCTACTGTTTCAACCAGATT+TGG - chr4_4:12694811-12694830 Msa0670280:CDS 40.0%
TTTCAGAAACAGGCCAAATC+TGG + chr4_4:12694827-12694846 None:intergenic 40.0%
ATTTCCACTTCATGCAGGTA+TGG - chr4_4:12694986-12695005 Msa0670280:intron 40.0%
GTACCTTACAGAATCATTCC+AGG - chr4_4:12695037-12695056 Msa0670280:intron 40.0%
! TTCTGCCACTTAAGATGCAA+TGG - chr4_4:12695133-12695152 Msa0670280:CDS 40.0%
TCATATATACGAGGACTCCA+TGG + chr4_4:12695325-12695344 None:intergenic 40.0%
AGTCCTCGTATATATGAGCT+AGG - chr4_4:12695328-12695347 Msa0670280:five_prime_UTR 40.0%
! ATGGTTTACGATGACGGCTA+TGG - chr4_4:12689394-12689413 Msa0670280:intron 45.0%
! TTTACGATGACGGCTATGGA+TGG - chr4_4:12689398-12689417 Msa0670280:intron 45.0%
TCACTTCAGCTTCTTCTTCC+TGG - chr4_4:12689542-12689561 Msa0670280:intron 45.0%
! TACGGTCCTATTTCTCCTAC+CGG - chr4_4:12689575-12689594 Msa0670280:intron 45.0%
GACACACAGACCTTATAGAC+AGG + chr4_4:12689608-12689627 None:intergenic 45.0%
CAGGGAGGGACAAAAATTTC+AGG + chr4_4:12689718-12689737 None:intergenic 45.0%
AGTTGTGCTGTGGTTTAGTG+AGG + chr4_4:12689797-12689816 None:intergenic 45.0%
AAGTGTCAGTGCTACATAGG+AGG + chr4_4:12690789-12690808 None:intergenic 45.0%
! CAGTGTCTATGTGTTGGTGT+CGG - chr4_4:12690902-12690921 Msa0670280:CDS 45.0%
AAAGCTCCCAAAGTTGAGTG+TGG + chr4_4:12691286-12691305 None:intergenic 45.0%
!! GCACCATCTTCTACTGATTC+TGG - chr4_4:12691434-12691453 Msa0670280:CDS 45.0%
TATTGGCGTTGTGCCTTTAG+AGG - chr4_4:12691622-12691641 Msa0670280:intron 45.0%
! ATGCATTATCGGTGCCTTCT+TGG + chr4_4:12691700-12691719 None:intergenic 45.0%
!! AAGAAGGCACCGATAATGCA+TGG - chr4_4:12691699-12691718 Msa0670280:CDS 45.0%
GAATAACAGGCCTAGACATG+TGG - chr4_4:12691918-12691937 Msa0670280:intron 45.0%
TCTGTCATTCTTGCAGGGTA+TGG - chr4_4:12691985-12692004 Msa0670280:intron 45.0%
! AATGATGTCATGGGCTGTTC+TGG - chr4_4:12692069-12692088 Msa0670280:intron 45.0%
CTCAACCTGCTTTATGCAGT+AGG + chr4_4:12692101-12692120 None:intergenic 45.0%
! TAAAGCAGGTTGAGTCTACG+AGG - chr4_4:12692107-12692126 Msa0670280:intron 45.0%
TGCTGGATGGCACAATCATT+AGG + chr4_4:12692164-12692183 None:intergenic 45.0%
TGTGCCATCCAGCATTTAGT+TGG - chr4_4:12692170-12692189 Msa0670280:intron 45.0%
CAGCTTCTATGGAGCTTGAT+TGG + chr4_4:12692293-12692312 None:intergenic 45.0%
ATCAAGCTCCATAGAAGCTG+AGG - chr4_4:12692293-12692312 Msa0670280:CDS 45.0%
GGCAATAAGTCAGTACCAAC+TGG + chr4_4:12692431-12692450 None:intergenic 45.0%
AGCTTCCCACCAGAAAAACT+TGG + chr4_4:12692640-12692659 None:intergenic 45.0%
!! AAGTTTTTCTGGTGGGAAGC+TGG - chr4_4:12692639-12692658 Msa0670280:intron 45.0%
ATGGATATTGCACACGATCG+AGG - chr4_4:12692675-12692694 Msa0670280:intron 45.0%
CCAGGAGATGTATACACTGA+TGG + chr4_4:12692974-12692993 None:intergenic 45.0%
CCATCAGTGTATACATCTCC+TGG - chr4_4:12692971-12692990 Msa0670280:intron 45.0%
TGGTTGACAAGGTACATTCC+AGG + chr4_4:12692992-12693011 None:intergenic 45.0%
GATTCACTGGATGGTTGACA+AGG + chr4_4:12693003-12693022 None:intergenic 45.0%
GTCAACCATCCAGTGAATCT+TGG - chr4_4:12693004-12693023 Msa0670280:intron 45.0%
! GCCTTCTTTTAACCTCTGGA+TGG - chr4_4:12693476-12693495 Msa0670280:intron 45.0%
!!! AAGCTCGCTATTTTTTGGGG+TGG - chr4_4:12693583-12693602 Msa0670280:intron 45.0%
AAGTAAGGCAAGAACTGCAC+GGG + chr4_4:12694386-12694405 None:intergenic 45.0%
GAAGTAAGGCAAGAACTGCA+CGG + chr4_4:12694387-12694406 None:intergenic 45.0%
CTTTCCATACCTGCATGAAG+TGG + chr4_4:12694993-12695012 None:intergenic 45.0%
! CATGCAGGTATGGAAAGTAC+TGG - chr4_4:12694996-12695015 Msa0670280:intron 45.0%
ACTGGAAACTCTATTGCGAC+AGG - chr4_4:12695014-12695033 Msa0670280:intron 45.0%
CTGGAAACTCTATTGCGACA+GGG - chr4_4:12695015-12695034 Msa0670280:intron 45.0%
GTAAACATGGCAGCAAGTGA+AGG + chr4_4:12695096-12695115 None:intergenic 45.0%
CTTGACAGAATTCTCCTCCA+TGG - chr4_4:12695305-12695324 Msa0670280:five_prime_UTR 45.0%
TATATACGAGGACTCCATGG+AGG + chr4_4:12695322-12695341 None:intergenic 45.0%
AGTCGAAGACGCTAAGTCGT+AGG - chr4_4:12689147-12689166 Msa0670280:three_prime_UTR 50.0%
GGACCGTAAACAGTTTGACC+AGG + chr4_4:12689563-12689582 None:intergenic 50.0%
CGGTTACCGGTAGGAGAAAT+AGG + chr4_4:12689584-12689603 None:intergenic 50.0%
CTTATAGACAGGGCGGTTAC+CGG + chr4_4:12689597-12689616 None:intergenic 50.0%
CACAGACCTTATAGACAGGG+CGG + chr4_4:12689604-12689623 None:intergenic 50.0%
TTTGTCTTGTCTTGCCCCAC+AGG + chr4_4:12689749-12689768 None:intergenic 50.0%
CACATAGACACTGCCACACT+GGG + chr4_4:12690895-12690914 None:intergenic 50.0%
ACACATAGACACTGCCACAC+TGG + chr4_4:12690896-12690915 None:intergenic 50.0%
GTGTGGCAGTGTCTATGTGT+TGG - chr4_4:12690896-12690915 Msa0670280:intron 50.0%
ATGGAGCTCTATCCACGCAT+TGG - chr4_4:12692004-12692023 Msa0670280:intron 50.0%
! GATTGGTCACCTAACCACCA+AGG + chr4_4:12692276-12692295 None:intergenic 50.0%
GTAGATGGCCTCAGCTTCTA+TGG + chr4_4:12692304-12692323 None:intergenic 50.0%
CTTTGGATACAGTGGCCAGT+TGG - chr4_4:12692413-12692432 Msa0670280:intron 50.0%
AGCTGGATACTGGAACACGA+TGG - chr4_4:12692656-12692675 Msa0670280:intron 50.0%
GTGTCCCTAAATCTTGCAGC+TGG - chr4_4:12692914-12692933 Msa0670280:CDS 50.0%
TTTGCTGGGGCTGTTTGGTT+TGG - chr4_4:12692945-12692964 Msa0670280:CDS 50.0%
! TTGCTGGGGCTGTTTGGTTT+GGG - chr4_4:12692946-12692965 Msa0670280:CDS 50.0%
GGCAAAGGCAAGAGTTTCGT+AGG - chr4_4:12693229-12693248 Msa0670280:intron 50.0%
CTGGGGAAAAGCTCCATCAA+AGG - chr4_4:12693272-12693291 Msa0670280:intron 50.0%
GCCTCATATACCACTGCTTC+CGG - chr4_4:12693439-12693458 Msa0670280:intron 50.0%
CCTCATATACCACTGCTTCC+GGG - chr4_4:12693440-12693459 Msa0670280:intron 50.0%
CTCATATACCACTGCTTCCG+GGG - chr4_4:12693441-12693460 Msa0670280:intron 50.0%
!! TTTTGTTTCCCCGGAAGCAG+TGG + chr4_4:12693452-12693471 None:intergenic 50.0%
AAGGGATACGTACCATCCAG+AGG + chr4_4:12693491-12693510 None:intergenic 50.0%
! CACTTTTCTGTGCTACCTGC+AGG - chr4_4:12694208-12694227 Msa0670280:intron 50.0%
! TTTTCTGTGCTACCTGCAGG+TGG - chr4_4:12694211-12694230 Msa0670280:CDS 50.0%
TTTCTGTGCTACCTGCAGGT+GGG - chr4_4:12694212-12694231 Msa0670280:CDS 50.0%
ATGGCGGTGCATGTTTGGAT+CGG - chr4_4:12694604-12694623 Msa0670280:intron 50.0%
TGGTTGAAACAGTAGGCCGT+TGG + chr4_4:12694807-12694826 None:intergenic 50.0%
CATGGCAGCAAGTGAAGGAT+AGG + chr4_4:12695091-12695110 None:intergenic 50.0%
CGGTAACCGCCCTGTCTATA+AGG - chr4_4:12689595-12689614 Msa0670280:intron 55.0%
ACATCTGTCGGTGACACGTG+TGG - chr4_4:12690324-12690343 Msa0670280:intron 55.0%
CATCTGTCGGTGACACGTGT+GGG - chr4_4:12690325-12690344 Msa0670280:intron 55.0%
CAGTTTGAACCTGGGGACCT+TGG - chr4_4:12692256-12692275 Msa0670280:intron 55.0%
TTTGAACCTGGGGACCTTGG+TGG - chr4_4:12692259-12692278 Msa0670280:intron 55.0%
TCTGGTGGGAAGCTGGATAC+TGG - chr4_4:12692646-12692665 Msa0670280:intron 55.0%
GGGTGCCAAGATTCACTGGA+TGG + chr4_4:12693012-12693031 None:intergenic 55.0%
TCCAGTGAATCTTGGCACCC+AGG - chr4_4:12693012-12693031 Msa0670280:intron 55.0%
ACCTGGGTGCCAAGATTCAC+TGG + chr4_4:12693016-12693035 None:intergenic 55.0%
CCCGGAAGCAGTGGTATATG+AGG + chr4_4:12693443-12693462 None:intergenic 55.0%
TTCTGTGCTACCTGCAGGTG+GGG - chr4_4:12694213-12694232 Msa0670280:CDS 55.0%
GAGTCATGGCGGTGCATGTT+TGG - chr4_4:12694599-12694618 Msa0670280:intron 55.0%
TAGACAGGGCGGTTACCGGT+AGG + chr4_4:12689593-12689612 None:intergenic 60.0%
CACAGGCACAAGCACAGGGA+GGG + chr4_4:12689732-12689751 None:intergenic 60.0%
CTCCCTGTGCTTGTGCCTGT+GGG - chr4_4:12689731-12689750 Msa0670280:intron 60.0%
TCCCTGTGCTTGTGCCTGTG+GGG - chr4_4:12689732-12689751 Msa0670280:intron 60.0%
! ACCTGGGGACCTTGGTGGTT+AGG - chr4_4:12692264-12692283 Msa0670280:intron 60.0%
ACCTAACCACCAAGGTCCCC+AGG + chr4_4:12692268-12692287 None:intergenic 60.0%
ACGAGCTAATCCCCACCTGC+AGG + chr4_4:12694226-12694245 None:intergenic 60.0%
CCACAGGCACAAGCACAGGG+AGG + chr4_4:12689733-12689752 None:intergenic 65.0%
CCTCCCTGTGCTTGTGCCTG+TGG - chr4_4:12689730-12689749 Msa0670280:intron 65.0%
GCCCCACAGGCACAAGCACA+GGG + chr4_4:12689736-12689755 None:intergenic 65.0%
TGCCCCACAGGCACAAGCAC+AGG + chr4_4:12689737-12689756 None:intergenic 65.0%
CGGTGACACGTGTGGGACAC+TGG - chr4_4:12690332-12690351 Msa0670280:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 12689038 12695357 12689038 ID=Msa0670280;Name=Msa0670280
chr4_4 mRNA 12689038 12695357 12689038 ID=Msa0670280-mRNA-1;Parent=Msa0670280;Name=Msa0670280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=152|1|1|1|1|1|13|288|438
chr4_4 exon 12689038 12689392 12689038 ID=Msa0670280-mRNA-1:exon:3854;Parent=Msa0670280-mRNA-1
chr4_4 exon 12689921 12690003 12689921 ID=Msa0670280-mRNA-1:exon:3853;Parent=Msa0670280-mRNA-1
chr4_4 exon 12690084 12690165 12690084 ID=Msa0670280-mRNA-1:exon:3852;Parent=Msa0670280-mRNA-1
chr4_4 exon 12690898 12690962 12690898 ID=Msa0670280-mRNA-1:exon:3851;Parent=Msa0670280-mRNA-1
chr4_4 exon 12691102 12691227 12691102 ID=Msa0670280-mRNA-1:exon:3850;Parent=Msa0670280-mRNA-1
chr4_4 exon 12691362 12691462 12691362 ID=Msa0670280-mRNA-1:exon:3849;Parent=Msa0670280-mRNA-1
chr4_4 exon 12691699 12691825 12691699 ID=Msa0670280-mRNA-1:exon:3848;Parent=Msa0670280-mRNA-1
chr4_4 exon 12692281 12692394 12692281 ID=Msa0670280-mRNA-1:exon:3847;Parent=Msa0670280-mRNA-1
chr4_4 exon 12692905 12692970 12692905 ID=Msa0670280-mRNA-1:exon:3846;Parent=Msa0670280-mRNA-1
chr4_4 exon 12693063 12693165 12693063 ID=Msa0670280-mRNA-1:exon:3845;Parent=Msa0670280-mRNA-1
chr4_4 exon 12694209 12694264 12694209 ID=Msa0670280-mRNA-1:exon:3844;Parent=Msa0670280-mRNA-1
chr4_4 exon 12694779 12695001 12694779 ID=Msa0670280-mRNA-1:exon:3843;Parent=Msa0670280-mRNA-1
chr4_4 exon 12695102 12695357 12695102 ID=Msa0670280-mRNA-1:exon:3842;Parent=Msa0670280-mRNA-1
chr4_4 five_prime_UTR 12695206 12695357 12695206 ID=Msa0670280-mRNA-1:five_prime_utr;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12695102 12695205 12695102 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12694779 12695001 12694779 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12694209 12694264 12694209 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12693063 12693165 12693063 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12692905 12692970 12692905 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12692281 12692394 12692281 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12691699 12691825 12691699 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12691362 12691462 12691362 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12691102 12691227 12691102 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12690898 12690962 12690898 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12690084 12690165 12690084 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12689921 12690003 12689921 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 CDS 12689326 12689392 12689326 ID=Msa0670280-mRNA-1:cds;Parent=Msa0670280-mRNA-1
chr4_4 three_prime_UTR 12689038 12689325 12689038 ID=Msa0670280-mRNA-1:three_prime_utr;Parent=Msa0670280-mRNA-1
Gene Sequence

>Msa0670280

ATGGTGGAATCGAAGAAGAAGACCGAAACAGTACATTCACCACTCGTCACATATGCTTCTATGATATCTCTTCTCACACTTGCTCCTCCTTTCGTCAATCTACTATGGTTTACGATGACGGCTATGGATGGATCAATTTTGAAGACATTTGATTATTTAAACAATAATGGTTTACAAGGTTTTGTTAATCTATGGCCTAAACCAACACTTCTAGCTTTCCAAATTATAGCTGTTTATGCTGCTTTTGAAGCTTCACTTCAGCTTCTTCTTCCTGGTCAAACTGTTTACGGTCCTATTTCTCCTACCGGTAACCGCCCTGTCTATAAGGCAAATGGTGTTGCTGCATATTTAGTTACTTTGGTTACTTACATTGCACTTTGGCGGTTTGGGATATTCAACCCAACAATCGTTTATGATCATTTGGGGGAGATATATTCCACACTCAACTTTGGGAGCTTTATCTTTTGTATTTTCTTATACATAAAAGGTCATTTGGCACCATCTTCTACTGATTCTGGTTCAAGTGGGAACATAATCATCGATTTTTACTGGGGTATGGAGCTCTATCCACGCATTGGAAAATATTTTGACATAAAAGTTTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTGGCACTTACCTACTGCATAAAGCAGTATGAAGAAAATGGGAAAGTAGCTGACTCAATGCTTGTAAATACTACATTAATGCTGGTGTATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATACTGGAACACGATGGATATTGCACACGATCGAGCTGGATTTTATATTTGCTGGGGCTGTTTGGTTTGGGTTCCATCAGTGTATACATCTCCTGGAATGTACCTTGTCAACCATCCAGTGAATCTTGGCACCCAGCTAGCACTCTTTATTTTAGTGGCTGGCATTCTGTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAGTTTCGTAGGACAAATGGAAAAAGCTTGGTCTGGGGAAAAGCTCCATCAAAGATAGAAGCCTCATATACCACTGCTTCCGGGGAAACAAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTAGCTCGTCATTTTCATTATGTCCCCGAAATATTAGCTGCATTCTTCTGGACAGTCCCAGCTCTATTCAATCACTTCTTGCCTTACTTCTACGTGATATTTCTTATTATCCTTCTTTTTGATCGAGCAAAAAGGGATGATGATCGATGCAGATCCAAGTATGGAAAGTACTGGAAACTCTATTGCGACAGGGTACCTTACAGAATCATTCCAGGAATATATTGA

Protein sequence

>Msa0670280

MVESKKKTETVHSPLVTYASMISLLTLAPPFVNLLWFTMTAMDGSILKTFDYLNNNGLQGFVNLWPKPTLLAFQIIAVYAAFEASLQLLLPGQTVYGPISPTGNRPVYKANGVAAYLVTLVTYIALWRFGIFNPTIVYDHLGEIYSTLNFGSFIFCIFLYIKGHLAPSSTDSGSSGNIIIDFYWGMELYPRIGKYFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTTLMLVYVTKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGTQLALFILVAGILCIYINYDCDRQRQEFRRTNGKSLVWGKAPSKIEASYTTASGETKRSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLIILLFDRAKRDDDRCRSKYGKYWKLYCDRVPYRIIPGIY*