AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795190 MtrunA17_Chr5g0397981 97.203 286 5 1 1 286 19 301 0.0 580
Msa0795190 MtrunA17_Chr4g0057281 76.208 269 61 2 20 286 19 286 5.27e-158 441
Msa0795190 MtrunA17_Chr8g0350401 56.401 289 117 3 1 281 1 288 4.03e-119 343
Msa0795190 MtrunA17_Chr7g0265551 56.314 293 112 5 1 280 73 362 3.38e-112 328
Msa0795190 MtrunA17_Chr1g0203751 57.308 260 109 2 20 278 28 286 7.06e-112 325
Msa0795190 MtrunA17_Chr6g0472801 55.344 262 115 2 16 276 18 278 1.48e-110 321
Msa0795190 MtrunA17_Chr7g0272101 24.453 274 173 8 23 278 4 261 7.69e-28 108
Msa0795190 MtrunA17_Chr4g0010881 25.379 264 161 8 23 277 4 240 3.70e-24 97.8
Msa0795190 MtrunA17_Chr1g0189671 34.722 144 91 3 22 164 6 147 4.05e-22 93.2
Msa0795190 MtrunA17_Chr1g0189611 34.932 146 91 3 22 164 6 150 1.69e-21 91.3
Msa0795190 MtrunA17_Chr1g0189591 33.117 154 96 4 13 161 6 157 4.82e-21 90.9
Msa0795190 MtrunA17_Chr1g0189641 33.562 146 90 4 22 164 6 147 3.90e-19 85.1
Msa0795190 MtrunA17_Chr1g0189751 32.667 150 94 4 18 164 2 147 9.51e-19 84.3
Msa0795190 MtrunA17_Chr1g0189721 25.940 266 184 6 18 273 2 264 1.67e-18 83.2
Msa0795190 MtrunA17_Chr7g0272091 22.414 290 185 9 15 273 2 282 1.95e-18 83.2
Msa0795190 MtrunA17_Chr1g0189621 26.236 263 178 9 22 273 6 263 2.76e-18 82.4
Msa0795190 MtrunA17_Chr1g0189821 25.725 276 169 10 22 275 6 267 1.33e-17 80.5
Msa0795190 MtrunA17_Chr1g0203281 31.250 144 96 3 22 164 6 147 1.58e-17 80.5
Msa0795190 MtrunA17_Chr1g0190071 31.973 147 95 3 22 164 6 151 3.68e-17 79.7
Msa0795190 MtrunA17_Chr1g0192371 28.049 164 112 4 18 176 6 168 4.56e-16 76.6
Msa0795190 MtrunA17_Chr1g0189781 29.870 154 97 4 18 164 6 155 7.86e-16 75.9
Msa0795190 MtrunA17_Chr1g0189771 28.571 161 102 4 12 164 4 159 3.86e-15 72.0
Msa0795190 MtrunA17_Chr3g0097191 31.944 144 91 4 20 161 10 148 1.13e-14 72.4
Msa0795190 MtrunA17_Chr1g0203331 31.008 129 86 3 37 164 6 132 4.10e-14 70.5
Msa0795190 MtrunA17_Chr1g0189661 30.872 149 93 5 22 164 6 150 1.45e-13 69.7
Msa0795190 MtrunA17_Chr1g0189711 28.431 204 120 7 22 216 6 192 6.76e-13 67.4
Msa0795190 MtrunA17_Chr3g0095261 31.852 135 83 5 20 152 10 137 4.96e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795190 AT1G12710.1 67.181 259 83 2 20 277 28 285 6.19e-128 365
Msa0795190 AT1G12710.2 57.807 301 83 3 20 277 28 327 7.00e-119 344
Msa0795190 AT3G61060.1 58.242 273 111 3 9 279 14 285 6.18e-118 340
Msa0795190 AT3G61060.2 58.029 274 111 4 9 279 14 286 2.18e-116 336
Msa0795190 AT1G63090.1 59.507 284 107 3 1 277 1 283 1.56e-114 332
Msa0795190 AT3G53000.1 53.333 285 120 3 1 273 1 284 1.13e-103 304
Msa0795190 AT5G52120.1 48.772 285 137 3 1 277 1 284 5.14e-98 290
Msa0795190 AT2G02360.1 34.591 159 94 4 9 164 3 154 9.10e-27 105
Msa0795190 AT2G02230.1 31.792 173 108 6 17 184 29 196 1.35e-23 98.6
Msa0795190 AT2G02240.1 34.752 141 86 3 23 162 64 199 1.65e-22 95.5
Msa0795190 AT1G09155.1 24.823 282 184 7 23 277 3 283 3.94e-22 94.0
Msa0795190 AT2G02340.1 32.927 164 100 5 18 176 34 192 4.84e-22 94.0
Msa0795190 AT2G02350.2 36.054 147 83 5 16 158 20 159 9.21e-22 92.8
Msa0795190 AT2G02250.1 30.667 150 95 3 15 161 42 185 1.75e-21 92.4
Msa0795190 AT2G02320.1 31.285 179 110 6 3 176 22 192 4.12e-20 88.6
Msa0795190 AT5G24560.1 26.347 167 112 4 22 187 5 161 1.48e-18 82.0
Msa0795190 AT2G02310.1 31.544 149 92 4 18 163 43 184 1.69e-18 84.0
Msa0795190 AT1G56250.1 24.232 293 164 8 23 273 4 280 9.79e-17 79.0
Msa0795190 AT1G56240.1 24.028 283 185 5 23 277 4 284 3.03e-16 77.4
Msa0795190 AT1G80110.1 24.242 264 181 9 20 273 1 255 5.04e-16 76.3
Msa0795190 AT2G02300.1 26.891 238 141 10 16 242 30 245 6.98e-13 67.8

Find 100 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGATTTACCAATCAATT+TGG 0.149392 5_3:+7094688 Msa0795190:CDS
AATTTCTTCTGTTAATTAAA+TGG 0.179440 5_3:+7097210 Msa0795190:three_prime_UTR
TGGTAAATCATGAAAGATTT+TGG 0.209100 5_3:-7094678 None:intergenic
AAACTGCTCCTAACCATTTC+AGG 0.215027 5_3:+7097042 Msa0795190:exon
ATCTCAATCTCAATCTTCTA+TGG 0.226201 5_3:+7094442 Msa0795190:exon
ATTGAAGCGACGCAACTTTC+AGG 0.233304 5_3:-7094530 None:intergenic
CTTCTTCTGCTGATTTCGTT+TGG 0.259520 5_3:+7094618 Msa0795190:CDS
GGGTGCAGAAAGATTGAAAA+AGG 0.264780 5_3:-7094391 None:intergenic
GGTTCAACCGGTTCAACTTT+AGG 0.271212 5_3:+7094500 Msa0795190:CDS
TAAACTTCAGATATACTCTT+AGG 0.292898 5_3:-7097330 None:intergenic
CTGTATGTCCCGGCTGGAAA+TGG 0.317696 5_3:-7096689 None:intergenic
TTCTTCTGCTGATTTCGTTT+GGG 0.325116 5_3:+7094619 Msa0795190:CDS
TTGAGATTGAATGGTAATAA+TGG 0.346216 5_3:-7094420 None:intergenic
CACTAAAGGTGGTCTGTGTT+TGG 0.348141 5_3:+7096970 Msa0795190:CDS
CATGATTTACCAATCAATTT+GGG 0.351067 5_3:+7094689 Msa0795190:CDS
ACATCAGACACAAATGTATA+TGG 0.354865 5_3:-7097401 None:intergenic
TTTGTTGTGTGCAGAAAGTT+TGG 0.359355 5_3:+7095423 Msa0795190:intron
AGCCTGTGCGATTCCAACTT+TGG 0.369551 5_3:+7096801 Msa0795190:CDS
CGCTTCAATCATCGGTTACA+TGG 0.370713 5_3:+7094544 Msa0795190:CDS
TTCTGAAAGGAACTGGCAAT+TGG 0.389942 5_3:+7096858 Msa0795190:CDS
TCTTTCTACCTGAAATGGTT+AGG 0.406400 5_3:-7097050 None:intergenic
TGTCCTTGGTGGACAAGGTT+TGG 0.418293 5_3:-7094314 None:intergenic
TTATTCTTCAGAATACATCT+AGG 0.422202 5_3:+7096713 Msa0795190:CDS
TTGCGGAAGATTTGAATGTA+TGG 0.422974 5_3:+7097286 Msa0795190:three_prime_UTR
TCCAACCAAACCGGTTCAAC+CGG 0.434266 5_3:+7094488 Msa0795190:CDS
TAAAGTTGAACCGGTTGAAC+CGG 0.438212 5_3:-7094498 None:intergenic
ACGACGTCCAAACCTCTTGT+AGG 0.439552 5_3:-7096741 None:intergenic
GGGCAAGCCTACAAGAGGTT+TGG 0.441598 5_3:+7096734 Msa0795190:CDS
GAATTGATGATAGAAGATAT+TGG 0.446914 5_3:+7095510 Msa0795190:CDS
CGACTTAATACTATTGATGA+TGG 0.447327 5_3:+7094740 Msa0795190:CDS
TTGAACCGGTTGAACCGGTT+TGG 0.448850 5_3:-7094493 None:intergenic
AGTCATAGAGAATTTGACTT+TGG 0.459733 5_3:-7096930 None:intergenic
CCTTGTCCACCAAGGACAAC+CGG 0.461370 5_3:+7094319 Msa0795190:five_prime_UTR
TTTGAGTACAGTAGAATGAA+TGG 0.461971 5_3:+7097423 Msa0795190:three_prime_UTR
ATATCATCACTGAAGAATCT+AGG 0.462039 5_3:+7095537 Msa0795190:CDS
AGCCACGGGCAAGCTTTGCT+TGG 0.464990 5_3:+7095454 Msa0795190:CDS
TTCCAACTTTGGACTTCAGA+TGG 0.477540 5_3:+7096812 Msa0795190:CDS
TAATTCACCTAAAGTTGAAC+CGG 0.483165 5_3:-7094507 None:intergenic
AGTTGCGTCGCTTCAATCAT+CGG 0.485599 5_3:+7094536 Msa0795190:CDS
ACGCGTACACCGGTTGTCCT+TGG 0.487127 5_3:-7094328 None:intergenic
TTGCATACCTTCAGCATACC+TGG 0.490977 5_3:+7096636 Msa0795190:CDS
TGTATGTCCCGGCTGGAAAT+GGG 0.498240 5_3:-7096688 None:intergenic
TCATTTCGATCCAACCAAAC+CGG 0.498725 5_3:+7094479 Msa0795190:CDS
AGATTGAGATTGAGATTGAA+TGG 0.499064 5_3:-7094429 None:intergenic
CCGGTTGTCCTTGGTGGACA+AGG 0.499332 5_3:-7094319 None:intergenic
TGCAACACTGAACATGTTCA+TGG 0.501094 5_3:+7096767 Msa0795190:CDS
CCTGGTGGTTTGAAGTGGAC+GGG 0.501663 5_3:+7096654 Msa0795190:CDS
AACAAGGGACTATCAGTACT+TGG 0.501726 5_3:+7095488 Msa0795190:CDS
GGTGATTTCACCGTTGAGGA+TGG 0.503816 5_3:+7096896 Msa0795190:CDS
CTTGGCTATATCAGCTAACA+AGG 0.503821 5_3:+7095472 Msa0795190:CDS
ACCGGTTGAACCGGTTTGGT+TGG 0.509700 5_3:-7094489 None:intergenic
AATGGTAATAATGGAAAAGA+GGG 0.510959 5_3:-7094411 None:intergenic
ATTGATTGCACGCACACTAA+AGG 0.512444 5_3:+7096956 Msa0795190:CDS
TCTAGTATGTATAGAACATA+GGG 0.518228 5_3:+7097091 Msa0795190:three_prime_UTR
CACTGAACATGTTCATGGGT+GGG 0.526344 5_3:+7096772 Msa0795190:CDS
CAGTTCCTTTCAGAAAACAC+TGG 0.526894 5_3:-7096850 None:intergenic
CGTACACCGGTTGTCCTTGG+TGG 0.532429 5_3:-7094325 None:intergenic
TCTCAATCTCAATCTTCTAT+GGG 0.534797 5_3:+7094443 Msa0795190:exon
GCCCATCTGAAGTCCAAAGT+TGG 0.536214 5_3:-7096814 None:intergenic
GAATGGTAATAATGGAAAAG+AGG 0.536724 5_3:-7094412 None:intergenic
CCCGTCCACTTCAAACCACC+AGG 0.538040 5_3:-7096654 None:intergenic
AATAAGCTGTATGTCCCGGC+TGG 0.538928 5_3:-7096695 None:intergenic
TTGACTTCCCATTTCCAGCC+GGG 0.542798 5_3:+7096681 Msa0795190:CDS
TCCAACTTTGGACTTCAGAT+GGG 0.543088 5_3:+7096813 Msa0795190:CDS
TTGAGTACAGTAGAATGAAT+GGG 0.545617 5_3:+7097424 Msa0795190:three_prime_UTR
GCATACCTGGTGGTTTGAAG+TGG 0.546087 5_3:+7096649 Msa0795190:CDS
AGGAGAAGATGGTAATTTGT+CGG 0.546308 5_3:-7094653 None:intergenic
GTGATTTCACCGTTGAGGAT+GGG 0.546700 5_3:+7096897 Msa0795190:CDS
TATTCTTCAGAATACATCTA+GGG 0.555396 5_3:+7096714 Msa0795190:CDS
TTGAGAAAGTTCTATGCTTG+CGG 0.556205 5_3:+7097269 Msa0795190:three_prime_UTR
ACCTGGTGGTTTGAAGTGGA+CGG 0.561016 5_3:+7096653 Msa0795190:CDS
GTCTAGTATGTATAGAACAT+AGG 0.562493 5_3:+7097090 Msa0795190:three_prime_UTR
GTTTGGATTGATAGAGCCAC+GGG 0.562866 5_3:+7095440 Msa0795190:CDS
ATGAATGGGAATAAGAGTGT+TGG 0.570486 5_3:+7097438 Msa0795190:three_prime_UTR
GAAGAATAAGCTGTATGTCC+CGG 0.575375 5_3:-7096699 None:intergenic
GTCCAAAGTTGGAATCGCAC+AGG 0.578305 5_3:-7096803 None:intergenic
TGCAGGTGATTTCACCGTTG+AGG 0.581687 5_3:+7096892 Msa0795190:CDS
TGCGGAAGATTTGAATGTAT+GGG 0.582252 5_3:+7097287 Msa0795190:three_prime_UTR
ATGTACAGCAACGCGTACAC+CGG 0.585734 5_3:-7094338 None:intergenic
CTGGTGGTTTGAAGTGGACG+GGG 0.591797 5_3:+7096655 Msa0795190:CDS
GTTGACTTCCCATTTCCAGC+CGG 0.592053 5_3:+7096680 Msa0795190:CDS
GAACATAGGGCGGTGTCATG+AGG 0.596499 5_3:+7097104 Msa0795190:three_prime_UTR
AGTTCCTTTCAGAAAACACT+GGG 0.601469 5_3:-7096849 None:intergenic
AGTTTGGATTGATAGAGCCA+CGG 0.603796 5_3:+7095439 Msa0795190:CDS
GATTGCACGCACACTAAAGG+TGG 0.628473 5_3:+7096959 Msa0795190:CDS
GCAACACTGAACATGTTCAT+GGG 0.629375 5_3:+7096768 Msa0795190:CDS
TGATGAATTCCCATCCTCAA+CGG 0.629667 5_3:-7096906 None:intergenic
ATCTAGGGCAAGCCTACAAG+AGG 0.631041 5_3:+7096729 Msa0795190:CDS
CAACGGTGAAATCACCTGCA+TGG 0.636855 5_3:-7096889 None:intergenic
TACTATTGATGATGGCACCA+AGG 0.640156 5_3:+7094748 Msa0795190:CDS
AGCCAAGCAAAGCTTGCCCG+TGG 0.641717 5_3:-7095456 None:intergenic
GCAAGTTGACAGATCTGAGG+AGG 0.643594 5_3:-7094569 None:intergenic
ACACTGAACATGTTCATGGG+TGG 0.656933 5_3:+7096771 Msa0795190:CDS
CATACCTTCAGCATACCTGG+TGG 0.660309 5_3:+7096639 Msa0795190:CDS
CAAACCACCAGGTATGCTGA+AGG 0.668408 5_3:-7096643 None:intergenic
TCCTTTCAGAAAACACTGGG+AGG 0.675908 5_3:-7096846 None:intergenic
GTTGCAAGTTGACAGATCTG+AGG 0.684069 5_3:-7094572 None:intergenic
AGTATGTATAGAACATAGGG+CGG 0.724118 5_3:+7097094 Msa0795190:three_prime_UTR
ATACCAAACCTTGTCCACCA+AGG 0.728318 5_3:+7094311 None:intergenic
TTGGCTATATCAGCTAACAA+GGG 0.728498 5_3:+7095473 Msa0795190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTAATTTTGAATGAT+TGG + chr5_3:7094939-7094958 Msa0795190:intron 10.0%
!! ACATTATAATCTATTTAATA+GGG + chr5_3:7096173-7096192 Msa0795190:intron 10.0%
!!! TTATTATAAATCTATTTTAG+TGG + chr5_3:7096570-7096589 Msa0795190:intron 10.0%
!!! TCTATCTTTTTCTATAAAAT+TGG + chr5_3:7095284-7095303 Msa0795190:intron 15.0%
!!! AGTTATGATATGATATTTTT+GGG + chr5_3:7095783-7095802 Msa0795190:intron 15.0%
!!! GTATTACATAATTTTCATTA+AGG + chr5_3:7095967-7095986 Msa0795190:intron 15.0%
!!! TTTTCATTAAGGAATATAAT+TGG + chr5_3:7095978-7095997 Msa0795190:intron 15.0%
!! CACATTATAATCTATTTAAT+AGG + chr5_3:7096172-7096191 Msa0795190:intron 15.0%
!! AATTTCTTCTGTTAATTAAA+TGG + chr5_3:7097210-7097229 Msa0795190:three_prime_UTR 15.0%
!! ATAAGAAAAAAGAGAGAAAT+GGG - chr5_3:7094366-7094385 None:intergenic 20.0%
!!! TATACCTTTAGAATCAATTT+TGG + chr5_3:7095069-7095088 Msa0795190:intron 20.0%
!!! ATTGTATTTTCTAGAATAGA+TGG + chr5_3:7095635-7095654 Msa0795190:intron 20.0%
!!! GAGTTATGATATGATATTTT+TGG + chr5_3:7095782-7095801 Msa0795190:intron 20.0%
!!! TTATTTTAGATGATTTAGAC+TGG + chr5_3:7095862-7095881 Msa0795190:intron 20.0%
!!! GATATTTATTGTTTTTATCG+AGG - chr5_3:7096153-7096172 None:intergenic 20.0%
!! AGAAAATCAATATGACTATT+TGG - chr5_3:7096199-7096218 None:intergenic 20.0%
!! TTACATAGATAAATCTTTGT+CGG + chr5_3:7096417-7096436 Msa0795190:intron 20.0%
!!! GAGTTTTTATATGATTCTTT+AGG + chr5_3:7097138-7097157 Msa0795190:three_prime_UTR 20.0%
! CATAAGAAAAAAGAGAGAAA+TGG - chr5_3:7094367-7094386 None:intergenic 25.0%
!! AATGGTAATAATGGAAAAGA+GGG - chr5_3:7094414-7094433 None:intergenic 25.0%
! TTGAGATTGAATGGTAATAA+TGG - chr5_3:7094423-7094442 None:intergenic 25.0%
!! TGGTAAATCATGAAAGATTT+TGG - chr5_3:7094681-7094700 None:intergenic 25.0%
! TCATGATTTACCAATCAATT+TGG + chr5_3:7094688-7094707 Msa0795190:CDS 25.0%
! CATGATTTACCAATCAATTT+GGG + chr5_3:7094689-7094708 Msa0795190:CDS 25.0%
! AATCAATAAAGTAATCACCT+TGG - chr5_3:7094768-7094787 None:intergenic 25.0%
!! AAATGTATGTGTGCTTATTT+TGG + chr5_3:7094889-7094908 Msa0795190:intron 25.0%
!! GAGTTTAAAATCAATTCTAG+AGG + chr5_3:7094995-7095014 Msa0795190:intron 25.0%
!!! ATAAGTTTTGTGAAACTGTT+TGG + chr5_3:7095164-7095183 Msa0795190:intron 25.0%
!!! TAAGTTTTGTGAAACTGTTT+GGG + chr5_3:7095165-7095184 Msa0795190:intron 25.0%
!! GAATTGATGATAGAAGATAT+TGG + chr5_3:7095510-7095529 Msa0795190:CDS 25.0%
!!! GGACTGTCTTAATTTTTTTT+TGG + chr5_3:7095656-7095675 Msa0795190:intron 25.0%
!!! TTGATTAGTTTAATGATGAG+AGG + chr5_3:7095712-7095731 Msa0795190:intron 25.0%
!!! TGATTAGTTTAATGATGAGA+GGG + chr5_3:7095713-7095732 Msa0795190:intron 25.0%
! ATCTAGAAAACTATGTTTGT+GGG - chr5_3:7095938-7095957 None:intergenic 25.0%
! AATCTAGAAAACTATGTTTG+TGG - chr5_3:7095939-7095958 None:intergenic 25.0%
!! CAAACATAGTTTTCTAGATT+TGG + chr5_3:7095939-7095958 Msa0795190:intron 25.0%
!!! CGAGGTTTTTTTTTCAATTT+AGG - chr5_3:7096135-7096154 None:intergenic 25.0%
!!! GATTTTCTGCATCTTTTTTA+TGG + chr5_3:7096211-7096230 Msa0795190:intron 25.0%
! TTATTCTTCAGAATACATCT+AGG + chr5_3:7096713-7096732 Msa0795190:CDS 25.0%
! TATTCTTCAGAATACATCTA+GGG + chr5_3:7096714-7096733 Msa0795190:CDS 25.0%
! TCTAGTATGTATAGAACATA+GGG + chr5_3:7097091-7097110 Msa0795190:three_prime_UTR 25.0%
!! TGTTCTATCAAGTTTTTGTA+TGG + chr5_3:7097235-7097254 Msa0795190:three_prime_UTR 25.0%
! TAAACTTCAGATATACTCTT+AGG - chr5_3:7097333-7097352 None:intergenic 25.0%
! GAATGGTAATAATGGAAAAG+AGG - chr5_3:7094415-7094434 None:intergenic 30.0%
AGATTGAGATTGAGATTGAA+TGG - chr5_3:7094432-7094451 None:intergenic 30.0%
ATCTCAATCTCAATCTTCTA+TGG + chr5_3:7094442-7094461 Msa0795190:exon 30.0%
TCTCAATCTCAATCTTCTAT+GGG + chr5_3:7094443-7094462 Msa0795190:exon 30.0%
TAATTCACCTAAAGTTGAAC+CGG - chr5_3:7094510-7094529 None:intergenic 30.0%
! TCTCTTTTACCCAAATTGAT+TGG - chr5_3:7094701-7094720 None:intergenic 30.0%
CGACTTAATACTATTGATGA+TGG + chr5_3:7094740-7094759 Msa0795190:CDS 30.0%
TCCATTTCGCGAAAAATTTA+GGG - chr5_3:7094821-7094840 None:intergenic 30.0%
ATCCATTTCGCGAAAAATTT+AGG - chr5_3:7094822-7094841 None:intergenic 30.0%
!!! ATTTTGGTTTAGCGTATGTT+TGG + chr5_3:7094905-7094924 Msa0795190:intron 30.0%
! TGTATGTATGATTCCACTTT+TGG - chr5_3:7095100-7095119 None:intergenic 30.0%
TGGAATCATACATACACTTA+AGG + chr5_3:7095104-7095123 Msa0795190:intron 30.0%
ATATCATCACTGAAGAATCT+AGG + chr5_3:7095537-7095556 Msa0795190:CDS 30.0%
!! GATTAGTTTAATGATGAGAG+GGG + chr5_3:7095714-7095733 Msa0795190:intron 30.0%
TCTAGAAAACTATGTTTGTG+GGG - chr5_3:7095937-7095956 None:intergenic 30.0%
GACTAACACATGTTGATATT+TGG - chr5_3:7096019-7096038 None:intergenic 30.0%
GTGAAAATTGGTAAAGTGAT+AGG + chr5_3:7096291-7096310 Msa0795190:intron 30.0%
GATAGGACATTGTTTGAAAA+TGG + chr5_3:7096308-7096327 Msa0795190:intron 30.0%
ATCATCAACTGCGAAAATTA+AGG - chr5_3:7096511-7096530 None:intergenic 30.0%
!!! AATCTATTTTAGTGGTGCTT+TGG + chr5_3:7096578-7096597 Msa0795190:intron 30.0%
! AGTCATAGAGAATTTGACTT+TGG - chr5_3:7096933-7096952 None:intergenic 30.0%
! CATTTTCTTTCTACCTGAAA+TGG - chr5_3:7097058-7097077 None:intergenic 30.0%
GTCTAGTATGTATAGAACAT+AGG + chr5_3:7097090-7097109 Msa0795190:three_prime_UTR 30.0%
!!! ATTAGAGTTTTGTTAGAGCT+AGG + chr5_3:7097161-7097180 Msa0795190:three_prime_UTR 30.0%
ACATCAGACACAAATGTATA+TGG - chr5_3:7097404-7097423 None:intergenic 30.0%
TTTGAGTACAGTAGAATGAA+TGG + chr5_3:7097423-7097442 Msa0795190:three_prime_UTR 30.0%
TTGAGTACAGTAGAATGAAT+GGG + chr5_3:7097424-7097443 Msa0795190:three_prime_UTR 30.0%
GGTGCAGAAAGATTGAAAAA+GGG - chr5_3:7094393-7094412 None:intergenic 35.0%
!! TTCTTCTGCTGATTTCGTTT+GGG + chr5_3:7094619-7094638 Msa0795190:CDS 35.0%
! AGGAGAAGATGGTAATTTGT+CGG - chr5_3:7094656-7094675 None:intergenic 35.0%
!! AATCATGAAAGATTTTGGCG+AGG - chr5_3:7094676-7094695 None:intergenic 35.0%
! ACCCTAAATTTTTCGCGAAA+TGG + chr5_3:7094817-7094836 Msa0795190:intron 35.0%
! GGAGCCAAAATTGATTCTAA+AGG - chr5_3:7095076-7095095 None:intergenic 35.0%
!! ATGTATGATTCCACTTTTGG+AGG - chr5_3:7095097-7095116 None:intergenic 35.0%
ATCATACATACACTTAAGGC+TGG + chr5_3:7095108-7095127 Msa0795190:intron 35.0%
CTTATCTCAGCTTATAACAC+AGG - chr5_3:7095350-7095369 None:intergenic 35.0%
! TTTGTTGTGTGCAGAAAGTT+TGG + chr5_3:7095423-7095442 Msa0795190:intron 35.0%
TTGGCTATATCAGCTAACAA+GGG + chr5_3:7095473-7095492 Msa0795190:CDS 35.0%
AACAGAATTGATCACAATGC+AGG - chr5_3:7095604-7095623 None:intergenic 35.0%
!! AAGGTAATGGAGAGAACTAA+GGG + chr5_3:7095737-7095756 Msa0795190:intron 35.0%
GACTGGAATACATTCAAGTA+AGG + chr5_3:7095879-7095898 Msa0795190:intron 35.0%
AACATGTGTTAGTCCAAGTA+TGG + chr5_3:7096025-7096044 Msa0795190:intron 35.0%
ACATGTGTTAGTCCAAGTAT+GGG + chr5_3:7096026-7096045 Msa0795190:intron 35.0%
ACCTGTAACCACATGTTTAA+GGG - chr5_3:7096060-7096079 None:intergenic 35.0%
AACCTGTAACCACATGTTTA+AGG - chr5_3:7096061-7096080 None:intergenic 35.0%
!! CACTTGATGATGGTGAAAAT+TGG + chr5_3:7096279-7096298 Msa0795190:intron 35.0%
! TTGTTTGAGTTCAACCACAT+TGG + chr5_3:7096468-7096487 Msa0795190:intron 35.0%
AGCAAGCATATTTACCAATG+TGG - chr5_3:7096485-7096504 None:intergenic 35.0%
AGTTCCTTTCAGAAAACACT+GGG - chr5_3:7096852-7096871 None:intergenic 35.0%
! AATTGGACTTTTTACCATGC+AGG + chr5_3:7096875-7096894 Msa0795190:CDS 35.0%
! TGCTCTTTTTGAATTCGCTT+GGG - chr5_3:7097012-7097031 None:intergenic 35.0%
! TTGCTCTTTTTGAATTCGCT+TGG - chr5_3:7097013-7097032 None:intergenic 35.0%
TCTTTCTACCTGAAATGGTT+AGG - chr5_3:7097053-7097072 None:intergenic 35.0%
AGTATGTATAGAACATAGGG+CGG + chr5_3:7097094-7097113 Msa0795190:three_prime_UTR 35.0%
TTGAGAAAGTTCTATGCTTG+CGG + chr5_3:7097269-7097288 Msa0795190:three_prime_UTR 35.0%
TTGCGGAAGATTTGAATGTA+TGG + chr5_3:7097286-7097305 Msa0795190:three_prime_UTR 35.0%
TGCGGAAGATTTGAATGTAT+GGG + chr5_3:7097287-7097306 Msa0795190:three_prime_UTR 35.0%
! ATGAATGGGAATAAGAGTGT+TGG + chr5_3:7097438-7097457 Msa0795190:three_prime_UTR 35.0%
GGGTGCAGAAAGATTGAAAA+AGG - chr5_3:7094394-7094413 None:intergenic 40.0%
TCATTTCGATCCAACCAAAC+CGG + chr5_3:7094479-7094498 Msa0795190:CDS 40.0%
TAAAGTTGAACCGGTTGAAC+CGG - chr5_3:7094501-7094520 None:intergenic 40.0%
!! CTTCTTCTGCTGATTTCGTT+TGG + chr5_3:7094618-7094637 Msa0795190:CDS 40.0%
!! TACTATTGATGATGGCACCA+AGG + chr5_3:7094748-7094767 Msa0795190:CDS 40.0%
!!! AATTTTGGCTCCTCCAAAAG+TGG + chr5_3:7095084-7095103 Msa0795190:intron 40.0%
! ACATACACTTAAGGCTGGTT+CGG + chr5_3:7095113-7095132 Msa0795190:intron 40.0%
GATAAGCTGTTTGTCCAAAC+AGG + chr5_3:7095364-7095383 Msa0795190:intron 40.0%
GTTTGTCCAAACAGGCTTAT+TGG + chr5_3:7095372-7095391 Msa0795190:intron 40.0%
! AAACAGGCTTATTGGCTGAT+GGG + chr5_3:7095380-7095399 Msa0795190:intron 40.0%
AGTTTGGATTGATAGAGCCA+CGG + chr5_3:7095439-7095458 Msa0795190:CDS 40.0%
CTTGGCTATATCAGCTAACA+AGG + chr5_3:7095472-7095491 Msa0795190:CDS 40.0%
AACAAGGGACTATCAGTACT+TGG + chr5_3:7095488-7095507 Msa0795190:CDS 40.0%
AGTTTAATGATGAGAGGGGA+AGG + chr5_3:7095718-7095737 Msa0795190:intron 40.0%
!! GAAGGTAATGGAGAGAACTA+AGG + chr5_3:7095736-7095755 Msa0795190:intron 40.0%
TAATGGAGAGAACTAAGGGA+GGG + chr5_3:7095741-7095760 Msa0795190:intron 40.0%
CATGTGTTAGTCCAAGTATG+GGG + chr5_3:7096027-7096046 Msa0795190:intron 40.0%
ATGTGTTAGTCCAAGTATGG+GGG + chr5_3:7096028-7096047 Msa0795190:intron 40.0%
AACCACATGTTTAAGGGACA+CGG - chr5_3:7096054-7096073 None:intergenic 40.0%
TCCCTTAAACATGTGGTTAC+AGG + chr5_3:7096056-7096075 Msa0795190:intron 40.0%
TACAGGTTCAATTCATACCC+AGG + chr5_3:7096073-7096092 Msa0795190:intron 40.0%
ACAGGTTCAATTCATACCCA+GGG + chr5_3:7096074-7096093 Msa0795190:intron 40.0%
! TTCTTCCATCGACTAGTCAA+GGG - chr5_3:7096108-7096127 None:intergenic 40.0%
! ATTCTTCCATCGACTAGTCA+AGG - chr5_3:7096109-7096128 None:intergenic 40.0%
CTTTGTCGGTACTATTGTGA+AGG + chr5_3:7096431-7096450 Msa0795190:intron 40.0%
GAAGAATAAGCTGTATGTCC+CGG - chr5_3:7096702-7096721 None:intergenic 40.0%
TGCAACACTGAACATGTTCA+TGG + chr5_3:7096767-7096786 Msa0795190:CDS 40.0%
GCAACACTGAACATGTTCAT+GGG + chr5_3:7096768-7096787 Msa0795190:CDS 40.0%
TTCCAACTTTGGACTTCAGA+TGG + chr5_3:7096812-7096831 Msa0795190:CDS 40.0%
TCCAACTTTGGACTTCAGAT+GGG + chr5_3:7096813-7096832 Msa0795190:CDS 40.0%
CAGTTCCTTTCAGAAAACAC+TGG - chr5_3:7096853-7096872 None:intergenic 40.0%
!! CAGTGTTTTCTGAAAGGAAC+TGG + chr5_3:7096851-7096870 Msa0795190:CDS 40.0%
! TTCTGAAAGGAACTGGCAAT+TGG + chr5_3:7096858-7096877 Msa0795190:CDS 40.0%
TGATGAATTCCCATCCTCAA+CGG - chr5_3:7096909-7096928 None:intergenic 40.0%
ATTGATTGCACGCACACTAA+AGG + chr5_3:7096956-7096975 Msa0795190:CDS 40.0%
AAACTGCTCCTAACCATTTC+AGG + chr5_3:7097042-7097061 Msa0795190:exon 40.0%
!!! AGAGTTTTGTTAGAGCTAGG+AGG + chr5_3:7097164-7097183 Msa0795190:three_prime_UTR 40.0%
!!! GAGTTTTGTTAGAGCTAGGA+GGG + chr5_3:7097165-7097184 Msa0795190:three_prime_UTR 40.0%
! GGTTCAACCGGTTCAACTTT+AGG + chr5_3:7094500-7094519 Msa0795190:CDS 45.0%
ATTGAAGCGACGCAACTTTC+AGG - chr5_3:7094533-7094552 None:intergenic 45.0%
AGTTGCGTCGCTTCAATCAT+CGG + chr5_3:7094536-7094555 Msa0795190:CDS 45.0%
! CGCTTCAATCATCGGTTACA+TGG + chr5_3:7094544-7094563 Msa0795190:CDS 45.0%
! GTTGCAAGTTGACAGATCTG+AGG - chr5_3:7094575-7094594 None:intergenic 45.0%
!! AGATTTTGGCGAGGAGAAGA+TGG - chr5_3:7094667-7094686 None:intergenic 45.0%
CATCAGCCAATAAGCCTGTT+TGG - chr5_3:7095381-7095400 None:intergenic 45.0%
! CAAACAGGCTTATTGGCTGA+TGG + chr5_3:7095379-7095398 Msa0795190:intron 45.0%
!! GGCTGATGGGTTTGGATATA+TGG + chr5_3:7095393-7095412 Msa0795190:intron 45.0%
GTTTGGATTGATAGAGCCAC+GGG + chr5_3:7095440-7095459 Msa0795190:CDS 45.0%
ATGATGAGAGGGGAAGGTAA+TGG + chr5_3:7095724-7095743 Msa0795190:intron 45.0%
! GTAATGGAGAGAACTAAGGG+AGG + chr5_3:7095740-7095759 Msa0795190:intron 45.0%
AATGGAGAGAACTAAGGGAG+GGG + chr5_3:7095742-7095761 Msa0795190:intron 45.0%
GTCAAGGGATCAATTACCCT+GGG - chr5_3:7096093-7096112 None:intergenic 45.0%
AGTCAAGGGATCAATTACCC+TGG - chr5_3:7096094-7096113 None:intergenic 45.0%
! TTGATCCCTTGACTAGTCGA+TGG + chr5_3:7096100-7096119 Msa0795190:intron 45.0%
ATCATCAAGTGCGCGAGAAT+AGG - chr5_3:7096270-7096289 None:intergenic 45.0%
TATTCTCGCGCACTTGATGA+TGG + chr5_3:7096269-7096288 Msa0795190:intron 45.0%
ATTACGCTTCTCTGCTACTG+AGG + chr5_3:7096373-7096392 Msa0795190:intron 45.0%
TTGCATACCTTCAGCATACC+TGG + chr5_3:7096636-7096655 Msa0795190:CDS 45.0%
ACACTGAACATGTTCATGGG+TGG + chr5_3:7096771-7096790 Msa0795190:CDS 45.0%
CACTGAACATGTTCATGGGT+GGG + chr5_3:7096772-7096791 Msa0795190:CDS 45.0%
TCCTTTCAGAAAACACTGGG+AGG - chr5_3:7096849-7096868 None:intergenic 45.0%
GTGATTTCACCGTTGAGGAT+GGG + chr5_3:7096897-7096916 Msa0795190:CDS 45.0%
CACTAAAGGTGGTCTGTGTT+TGG + chr5_3:7096970-7096989 Msa0795190:CDS 45.0%
! TGTCCTTGGTGGACAAGGTT+TGG - chr5_3:7094317-7094336 None:intergenic 50.0%
ATGTACAGCAACGCGTACAC+CGG - chr5_3:7094341-7094360 None:intergenic 50.0%
! TCCAACCAAACCGGTTCAAC+CGG + chr5_3:7094488-7094507 Msa0795190:CDS 50.0%
TTGAACCGGTTGAACCGGTT+TGG - chr5_3:7094496-7094515 None:intergenic 50.0%
! GCAAGTTGACAGATCTGAGG+AGG - chr5_3:7094572-7094591 None:intergenic 50.0%
!! CACTTAAGGCTGGTTCGGAT+TGG + chr5_3:7095118-7095137 Msa0795190:intron 50.0%
!! GGCTTATTGGCTGATGGGTT+TGG + chr5_3:7095385-7095404 Msa0795190:intron 50.0%
ATGGAGAGAACTAAGGGAGG+GGG + chr5_3:7095743-7095762 Msa0795190:intron 50.0%
CATACCTTCAGCATACCTGG+TGG + chr5_3:7096639-7096658 Msa0795190:CDS 50.0%
CAAACCACCAGGTATGCTGA+AGG - chr5_3:7096646-7096665 None:intergenic 50.0%
GCATACCTGGTGGTTTGAAG+TGG + chr5_3:7096649-7096668 Msa0795190:CDS 50.0%
! ACCTGGTGGTTTGAAGTGGA+CGG + chr5_3:7096653-7096672 Msa0795190:CDS 50.0%
! GTTGACTTCCCATTTCCAGC+CGG + chr5_3:7096680-7096699 Msa0795190:CDS 50.0%
TTGACTTCCCATTTCCAGCC+GGG + chr5_3:7096681-7096700 Msa0795190:CDS 50.0%
TGTATGTCCCGGCTGGAAAT+GGG - chr5_3:7096691-7096710 None:intergenic 50.0%
AATAAGCTGTATGTCCCGGC+TGG - chr5_3:7096698-7096717 None:intergenic 50.0%
! ATCTAGGGCAAGCCTACAAG+AGG + chr5_3:7096729-7096748 Msa0795190:CDS 50.0%
ACGACGTCCAAACCTCTTGT+AGG - chr5_3:7096744-7096763 None:intergenic 50.0%
AGCCTGTGCGATTCCAACTT+TGG + chr5_3:7096801-7096820 Msa0795190:CDS 50.0%
GTCCAAAGTTGGAATCGCAC+AGG - chr5_3:7096806-7096825 None:intergenic 50.0%
! GCCCATCTGAAGTCCAAAGT+TGG - chr5_3:7096817-7096836 None:intergenic 50.0%
! GCCTCCCAGTGTTTTCTGAA+AGG + chr5_3:7096845-7096864 Msa0795190:CDS 50.0%
CAACGGTGAAATCACCTGCA+TGG - chr5_3:7096892-7096911 None:intergenic 50.0%
TGCAGGTGATTTCACCGTTG+AGG + chr5_3:7096892-7096911 Msa0795190:CDS 50.0%
GGTGATTTCACCGTTGAGGA+TGG + chr5_3:7096896-7096915 Msa0795190:CDS 50.0%
GATTGCACGCACACTAAAGG+TGG + chr5_3:7096959-7096978 Msa0795190:CDS 50.0%
CCTTGTCCACCAAGGACAAC+CGG + chr5_3:7094319-7094338 Msa0795190:five_prime_UTR 55.0%
!! ACCGGTTGAACCGGTTTGGT+TGG - chr5_3:7094492-7094511 None:intergenic 55.0%
AGAGAACTAAGGGAGGGGGA+AGG + chr5_3:7095747-7095766 Msa0795190:intron 55.0%
GGCCGTGTCCCTTAAACATG+TGG + chr5_3:7096049-7096068 Msa0795190:intron 55.0%
GCTTCTCTGCTACTGAGGCA+CGG + chr5_3:7096378-7096397 Msa0795190:intron 55.0%
! CCTGGTGGTTTGAAGTGGAC+GGG + chr5_3:7096654-7096673 Msa0795190:CDS 55.0%
! CTGGTGGTTTGAAGTGGACG+GGG + chr5_3:7096655-7096674 Msa0795190:CDS 55.0%
CTGTATGTCCCGGCTGGAAA+TGG - chr5_3:7096692-7096711 None:intergenic 55.0%
GGGCAAGCCTACAAGAGGTT+TGG + chr5_3:7096734-7096753 Msa0795190:CDS 55.0%
!! GAACATAGGGCGGTGTCATG+AGG + chr5_3:7097104-7097123 Msa0795190:three_prime_UTR 55.0%
! CCGGTTGTCCTTGGTGGACA+AGG - chr5_3:7094322-7094341 None:intergenic 60.0%
! CGTACACCGGTTGTCCTTGG+TGG - chr5_3:7094328-7094347 None:intergenic 60.0%
! ACGCGTACACCGGTTGTCCT+TGG - chr5_3:7094331-7094350 None:intergenic 60.0%
AGCCACGGGCAAGCTTTGCT+TGG + chr5_3:7095454-7095473 Msa0795190:CDS 60.0%
AGCCAAGCAAAGCTTGCCCG+TGG - chr5_3:7095459-7095478 None:intergenic 60.0%
AAGGGAGGGGGAAGGAATCG+AGG + chr5_3:7095755-7095774 Msa0795190:intron 60.0%
AGGGAGGGGGAAGGAATCGA+GGG + chr5_3:7095756-7095775 Msa0795190:intron 60.0%
AGGGGGAAGGAATCGAGGGA+TGG + chr5_3:7095760-7095779 Msa0795190:intron 60.0%
CCCGTCCACTTCAAACCACC+AGG - chr5_3:7096657-7096676 None:intergenic 60.0%
AGGGACACGGCCCCCATACT+TGG - chr5_3:7096041-7096060 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7094314 7097472 7094314 ID=Msa0795190;Name=Msa0795190
chr5_3 mRNA 7094314 7097472 7094314 ID=Msa0795190-mRNA-1;Parent=Msa0795190;Name=Msa0795190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=147|1|1|1|1|1|3|418|286
chr5_3 exon 7094314 7094769 7094314 ID=Msa0795190-mRNA-1:exon:2892;Parent=Msa0795190-mRNA-1
chr5_3 exon 7095437 7095558 7095437 ID=Msa0795190-mRNA-1:exon:2893;Parent=Msa0795190-mRNA-1
chr5_3 exon 7096625 7097472 7096625 ID=Msa0795190-mRNA-1:exon:2894;Parent=Msa0795190-mRNA-1
chr5_3 five_prime_UTR 7094314 7094460 7094314 ID=Msa0795190-mRNA-1:five_prime_utr;Parent=Msa0795190-mRNA-1
chr5_3 CDS 7094461 7094769 7094461 ID=Msa0795190-mRNA-1:cds;Parent=Msa0795190-mRNA-1
chr5_3 CDS 7095437 7095558 7095437 ID=Msa0795190-mRNA-1:cds;Parent=Msa0795190-mRNA-1
chr5_3 CDS 7096625 7097054 7096625 ID=Msa0795190-mRNA-1:cds;Parent=Msa0795190-mRNA-1
chr5_3 three_prime_UTR 7097055 7097472 7097055 ID=Msa0795190-mRNA-1:three_prime_utr;Parent=Msa0795190-mRNA-1
Gene Sequence

>Msa0795190

ATGGGTATTCGCTTTTCTTCATTTCGATCCAACCAAACCGGTTCAACCGGTTCAACTTTAGGTGAATTACCTGAAAGTTGCGTCGCTTCAATCATCGGTTACATGGATCCTCCTCAGATCTGTCAACTTGCAACGTTGAATCGTGCTTTTCGTGCTGCTTCTTCTGCTGATTTCGTTTGGGAATCTAAATTGCCGACAAATTACCATCTTCTCCTCGCCAAAATCTTTCATGATTTACCAATCAATTTGGGTAAAAGAGACATTTATGCTTCTCTTTGTCGACTTAATACTATTGATGATGGCACCAAGAAAGTTTGGATTGATAGAGCCACGGGCAAGCTTTGCTTGGCTATATCAGCTAACAAGGGACTATCAGTACTTGGAATTGATGATAGAAGATATTGGAATTATATCATCACTGAAGAATCTAGATTCAATACTGTTGCATACCTTCAGCATACCTGGTGGTTTGAAGTGGACGGGGAAGTTGACTTCCCATTTCCAGCCGGGACATACAGCTTATTCTTCAGAATACATCTAGGGCAAGCCTACAAGAGGTTTGGACGTCGTGTCTGCAACACTGAACATGTTCATGGGTGGGACAAAAAGCCTGTGCGATTCCAACTTTGGACTTCAGATGGGCAATACGTTGCCTCCCAGTGTTTTCTGAAAGGAACTGGCAATTGGACTTTTTACCATGCAGGTGATTTCACCGTTGAGGATGGGAATTCATCAACCAAAGTCAAATTCTCTATGACTCAAATTGATTGCACGCACACTAAAGGTGGTCTGTGTTTGGATTCTGCTTTTATTTACCCAAGCGAATTCAAAAAGAGCAAGTCATTTTTAAACTGCTCCTAA
Protein sequence

>Msa0795190

MGIRFSSFRSNQTGSTGSTLGELPESCVASIIGYMDPPQICQLATLNRAFRAASSADFVWESKLPTNYHLLLAKIFHDLPINLGKRDIYASLCRLNTIDDGTKKVWIDRATGKLCLAISANKGLSVLGIDDRRYWNYIITEESRFNTVAYLQHTWWFEVDGEVDFPFPAGTYSLFFRIHLGQAYKRFGRRVCNTEHVHGWDKKPVRFQLWTSDGQYVASQCFLKGTGNWTFYHAGDFTVEDGNSSTKVKFSMTQIDCTHTKGGLCLDSAFIYPSEFKKSKSFLNCS*