AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1327640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 246 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATGCTTCTGGTATTTC+TGG 0.061939 8_4:-44959644 None:intergenic
ACTTGCAGAACCTTGGTATT+TGG 0.208334 8_4:+44954735 Msa1327640:CDS
TCTGGAGTTTGGCAACTTCT+TGG 0.234836 8_4:+44957921 Msa1327640:three_prime_UTR
GTTTATAACAGGTTGTTATT+AGG 0.239278 8_4:+44959953 Msa1327640:three_prime_UTR
CTCAATGCTCTCGTACAATT+TGG 0.244008 8_4:-44959496 None:intergenic
CGATGGGACAAAGTTCAATT+TGG 0.250353 8_4:+44957373 Msa1327640:three_prime_UTR
GAAGAGAGCTCTCTAACTTT+TGG 0.267353 8_4:+44958214 Msa1327640:three_prime_UTR
CAATGAATCCACTCAAAGTA+TGG 0.272331 8_4:-44959024 None:intergenic
AGATGCATGGACAATGTTTC+TGG 0.285007 8_4:+44959779 Msa1327640:three_prime_UTR
CTGTTATAAACCTTTATTCT+TGG 0.292115 8_4:-44959941 None:intergenic
CTGGAGTTTGGCAACTTCTT+GGG 0.292163 8_4:+44957922 Msa1327640:three_prime_UTR
CCGTCGAATTGTTCGGATAA+TGG 0.293118 8_4:-44956746 None:intergenic
TTTATAACAGGTTGTTATTA+GGG 0.295281 8_4:+44959954 Msa1327640:three_prime_UTR
TGCGTTCTCTGGTCTGTATT+TGG 0.301345 8_4:+44960283 Msa1327640:three_prime_UTR
GTTAGAAAAGTCGGGGCTTT+TGG 0.306638 8_4:+44958943 Msa1327640:three_prime_UTR
TATCAGCTAAGAGTAGAATT+TGG 0.310778 8_4:+44960065 Msa1327640:three_prime_UTR
GTGCCCTTGGCTCTGGAGTT+TGG 0.311464 8_4:+44957910 Msa1327640:three_prime_UTR
AAAGCAGATAATGGATGTTA+TGG 0.313231 8_4:+44959672 Msa1327640:three_prime_UTR
CAAATCAAATCTATTTGAAT+TGG 0.315503 8_4:-44957479 None:intergenic
GCATATTATACTTCAATATC+TGG 0.315747 8_4:+44960232 Msa1327640:three_prime_UTR
AGCAGCCTCCTTCAGGAAAA+TGG 0.316245 8_4:-44959184 None:intergenic
CAGAAATACCAGAAGCATTC+AGG 0.317205 8_4:+44959645 Msa1327640:three_prime_UTR
GGGTTGGGGAAACTGGCTTC+AGG 0.327671 8_4:+44958635 Msa1327640:three_prime_UTR
TCAGTTCGGGTTGGGGAAAC+TGG 0.331943 8_4:+44958628 Msa1327640:three_prime_UTR
AGTCATCATCTCACCAATTT+CGG 0.333656 8_4:-44959226 None:intergenic
TATGGGTCCTCCAAAGCTTC+TGG 0.334039 8_4:-44959006 None:intergenic
AAGCAACAGCCATTTGAGTT+TGG 0.335402 8_4:-44958006 None:intergenic
AATTGCTGTAAATAGGCTTT+TGG 0.337187 8_4:+44960042 Msa1327640:three_prime_UTR
AGCCCACTATTCACTGGAAT+TGG 0.339986 8_4:-44958469 None:intergenic
GCTTTCTTACATCGAAAATC+TGG 0.339987 8_4:+44959080 Msa1327640:three_prime_UTR
TTGTTATTAGGGTTGTTAAT+AGG 0.342329 8_4:+44959965 Msa1327640:three_prime_UTR
GCTGCTTATCTACTTGACTA+TGG 0.343089 8_4:+44958664 Msa1327640:three_prime_UTR
CTGTTTCTGACCTATAGTTA+TGG 0.343217 8_4:-44959847 None:intergenic
GCTTTGCCTTCCAGAAGCTT+TGG 0.355876 8_4:+44958996 Msa1327640:three_prime_UTR
CTCTCCCTGGACTTGGAAAC+GGG 0.356675 8_4:+44959454 Msa1327640:three_prime_UTR
GGTCTGTGCCTTGCCGAAAT+TGG 0.357724 8_4:+44959213 Msa1327640:three_prime_UTR
ATACGATGCACAGCAGTAAC+AGG 0.359255 8_4:-44958865 None:intergenic
CATAGGCAGCAGCCTCCTTC+AGG 0.360950 8_4:-44959191 None:intergenic
GTATAGGGATATTAGACATT+AGG 0.362621 8_4:+44958884 Msa1327640:three_prime_UTR
TGAAACGTTCAGTTCGGGTT+GGG 0.364791 8_4:+44958620 Msa1327640:three_prime_UTR
CCGTAAGAATTGCTGTAAAT+AGG 0.371384 8_4:+44960035 Msa1327640:three_prime_UTR
GTTACTGCTGTGCATCGTAT+AGG 0.375398 8_4:+44958868 Msa1327640:three_prime_UTR
GCTTTGCCAACAAAACCTTT+TGG 0.380074 8_4:-44958580 None:intergenic
TTACTGCTGTGCATCGTATA+GGG 0.381515 8_4:+44958869 Msa1327640:three_prime_UTR
CAAGAATAAAGGTTTATAAC+AGG 0.383654 8_4:+44959942 Msa1327640:three_prime_UTR
GACTATAAAACCAAGAATAA+AGG 0.387328 8_4:+44959931 Msa1327640:three_prime_UTR
GATTTAATTCCTATTGATCA+TGG 0.388146 8_4:+44958973 Msa1327640:three_prime_UTR
CAGGTTTGAAACGTTCAGTT+CGG 0.388270 8_4:+44958614 Msa1327640:three_prime_UTR
GTGTGTATTGGGCATGGAAT+TGG 0.388380 8_4:+44958129 Msa1327640:three_prime_UTR
GGTTGTTGTTAAGATAGTTC+TGG 0.388560 8_4:+44959986 Msa1327640:three_prime_UTR
CATACTTTGAGTGGATTCAT+TGG 0.391075 8_4:+44959025 Msa1327640:three_prime_UTR
AGAATAACCGTCGAATTGTT+CGG 0.391815 8_4:-44956753 None:intergenic
ACTGAAACTGGGTGTGTATT+GGG 0.393077 8_4:+44958118 Msa1327640:three_prime_UTR
CAAACAAGTGCCCTTGGCTC+TGG 0.397748 8_4:+44957903 Msa1327640:three_prime_UTR
TTGCCTTCCAGAAGCTTTGG+AGG 0.400314 8_4:+44958999 Msa1327640:three_prime_UTR
CTCTCGTACAATTTGGAGAA+TGG 0.400704 8_4:-44959489 None:intergenic
GAAGATTCTATCAAAATTCT+CGG 0.400942 8_4:-44957724 None:intergenic
TCAGTTTCTCTCCCTGGACT+TGG 0.403434 8_4:+44959447 Msa1327640:three_prime_UTR
TGCAGAAAGCTGCTGCTCAT+TGG 0.403564 8_4:-44959721 None:intergenic
TCTGTTGATGTCTCGTAAAT+CGG 0.405325 8_4:+44957973 Msa1327640:three_prime_UTR
GAAGGAACTGCCTATGATTC+GGG 0.405810 8_4:+44959131 Msa1327640:three_prime_UTR
AAGCTCAAGCTTTGTGAAGC+TGG 0.410769 8_4:+44959743 Msa1327640:three_prime_UTR
TCTCTCCCTGGACTTGGAAA+CGG 0.412632 8_4:+44959453 Msa1327640:three_prime_UTR
AGTGGTCCTATTGAGATAGT+AGG 0.413897 8_4:+44958373 Msa1327640:three_prime_UTR
TCAGGTGGAAAAGCAGATAA+TGG 0.414362 8_4:+44959663 Msa1327640:three_prime_UTR
TTCTTTCAAACAAGTGCCCT+TGG 0.415114 8_4:+44957897 Msa1327640:three_prime_UTR
AAGAGGAAATCCATAACTAT+AGG 0.417543 8_4:+44959837 Msa1327640:three_prime_UTR
ACAAACAACCTCCAGTTCAC+TGG 0.419347 8_4:-44959277 None:intergenic
CGGTTATTCTGAAGATTGTT+CGG 0.421997 8_4:+44956766 Msa1327640:CDS
GTATTGCTCATCTTCAAAAC+TGG 0.422923 8_4:-44959893 None:intergenic
TTTGAAGATGAGCAATACTT+TGG 0.424240 8_4:+44959898 Msa1327640:three_prime_UTR
AAGCAAGCCTCCCGAATCAT+AGG 0.426402 8_4:-44959141 None:intergenic
CGAACTGAACGTTTCAAACC+TGG 0.427079 8_4:-44958613 None:intergenic
AGGCAAAGCCCATGATCAAT+AGG 0.427118 8_4:-44958982 None:intergenic
CTCCTTCAATTCCTTTACTC+AGG 0.427774 8_4:+44957832 Msa1327640:three_prime_UTR
AGAGAAACTGATCTGGTTAG+AGG 0.430381 8_4:-44959435 None:intergenic
TGAGTGGATTCATTGGCCTC+AGG 0.430525 8_4:+44959032 Msa1327640:three_prime_UTR
ATTTGTTAGTTAGAAAAGTC+GGG 0.431689 8_4:+44958935 Msa1327640:three_prime_UTR
GGAAGGAACTGCCTATGATT+CGG 0.436125 8_4:+44959130 Msa1327640:three_prime_UTR
CTGAAGGAGGCTGCTGCCTA+TGG 0.439179 8_4:+44959192 Msa1327640:three_prime_UTR
GATTTCCTCTTGGCAAATGC+CGG 0.440028 8_4:-44959825 None:intergenic
TATTTATCAGACAAGCCATA+TGG 0.442498 8_4:-44960123 None:intergenic
GATTGCCCTACTATCTCAAT+AGG 0.443982 8_4:-44958379 None:intergenic
CCATTCCCGTTTCCAAGTCC+AGG 0.445014 8_4:-44959459 None:intergenic
AACTGAAACTGGGTGTGTAT+TGG 0.447347 8_4:+44958117 Msa1327640:three_prime_UTR
GCATTACTCTATGCGTTCTC+TGG 0.449968 8_4:+44960272 Msa1327640:three_prime_UTR
GCAAGTGACTATGGGACATC+TGG 0.450686 8_4:+44958838 Msa1327640:three_prime_UTR
TATAGTTATGGATTTCCTCT+TGG 0.450899 8_4:-44959835 None:intergenic
TTTGGATTGTTAGGGGCAAA+AGG 0.455081 8_4:-44958562 None:intergenic
AATGTCAACGATGGAGTCAA+TGG 0.457911 8_4:+44958742 Msa1327640:three_prime_UTR
ATTCCAGTGAATAGTGGGCT+TGG 0.464563 8_4:+44958472 Msa1327640:three_prime_UTR
CCTATTTACAGCAATTCTTA+CGG 0.465007 8_4:-44960035 None:intergenic
GATATAGACTGTGATGTAGC+TGG 0.466536 8_4:+44959378 Msa1327640:three_prime_UTR
GGTTGGGGAAACTGGCTTCA+GGG 0.467085 8_4:+44958636 Msa1327640:three_prime_UTR
TGAGGAGGAACCCAGTGAAC+TGG 0.469642 8_4:+44959266 Msa1327640:three_prime_UTR
AAGCAGATAATGGATGTTAT+GGG 0.472965 8_4:+44959673 Msa1327640:three_prime_UTR
ACAATGACCTTAGTTCTGTT+CGG 0.474164 8_4:+44958251 Msa1327640:three_prime_UTR
TCTCGTACAATTTGGAGAAT+GGG 0.475346 8_4:-44959488 None:intergenic
CCTGGATATTATGAAGCATA+TGG 0.475595 8_4:+44958408 Msa1327640:three_prime_UTR
CATCACAGTCTATATCAAAC+AGG 0.475913 8_4:-44959371 None:intergenic
CAGCCCTGTCCAAACTCAAA+TGG 0.476458 8_4:+44957997 Msa1327640:three_prime_UTR
GAAAGCTCATCCTCGGAGAA+TGG 0.476660 8_4:-44959063 None:intergenic
GTACGAGAGCATTGAGGAGG+AGG 0.476694 8_4:+44959503 Msa1327640:three_prime_UTR
ATCTCCACAGACTGACTTGA+GGG 0.478773 8_4:+44959338 Msa1327640:three_prime_UTR
TGTTATGGGAATACATCATC+TGG 0.479228 8_4:+44959687 Msa1327640:three_prime_UTR
AATCTGTGAGCTTTGTAGAA+TGG 0.479487 8_4:+44957553 Msa1327640:three_prime_UTR
AACATCATGTTAAGTGAGAC+AGG 0.480319 8_4:+44959621 Msa1327640:three_prime_UTR
TGGATGAACTTCTGTGCATA+AGG 0.481738 8_4:-44958303 None:intergenic
GCAATACTTTGGTAAGATAG+TGG 0.481782 8_4:+44959909 Msa1327640:three_prime_UTR
ACAGCCATTTGAGTTTGGAC+AGG 0.485062 8_4:-44958001 None:intergenic
TGCTAACCACCTTCTTACTC+TGG 0.486077 8_4:-44958774 None:intergenic
GAAACGTTCAGTTCGGGTTG+GGG 0.486697 8_4:+44958621 Msa1327640:three_prime_UTR
ATTGAGGAGGAGGAAGAAGA+AGG 0.486989 8_4:+44959513 Msa1327640:three_prime_UTR
TAAGGTTACGCGTAAGAAGA+AGG 0.487508 8_4:-44958285 None:intergenic
GATCCAATTCCAGTGAATAG+TGG 0.488188 8_4:+44958466 Msa1327640:three_prime_UTR
AAGGAATATGTTGGCAGAAA+GGG 0.488308 8_4:+44959308 Msa1327640:three_prime_UTR
GTTAGAGAGCTCTCTTCAGT+TGG 0.488845 8_4:-44958208 None:intergenic
TCCCTGAGTAAAGGAATTGA+AGG 0.491546 8_4:-44957834 None:intergenic
GATCCACCATGTCTTGTAAG+TGG 0.493327 8_4:+44957336 Msa1327640:three_prime_UTR
GGCAAAGCTCTTGGACAACC+AGG 0.494242 8_4:+44958595 Msa1327640:three_prime_UTR
ACCAGATCAGTTTCTCTCCC+TGG 0.495779 8_4:+44959441 Msa1327640:three_prime_UTR
TATTTGGTCTCTTACGAAGC+AGG 0.497837 8_4:+44960299 Msa1327640:three_prime_UTR
AATTTGTTAGTTAGAAAAGT+CGG 0.498110 8_4:+44958934 Msa1327640:three_prime_UTR
CCTGGACTTGGAAACGGGAA+TGG 0.499054 8_4:+44959459 Msa1327640:three_prime_UTR
AGGTTTGAAACGTTCAGTTC+GGG 0.499842 8_4:+44958615 Msa1327640:three_prime_UTR
TGTTGTCTCACGCAAATCGC+GGG 0.500682 8_4:+44957420 Msa1327640:three_prime_UTR
ACTCCATGCTTGTCACCCAC+TGG 0.501468 8_4:+44958325 Msa1327640:three_prime_UTR
CATTGTGAAGGCAATGCAGA+TGG 0.505557 8_4:+44958438 Msa1327640:three_prime_UTR
GAGGAGGAAGAAGAAGGTGA+TGG 0.508640 8_4:+44959519 Msa1327640:three_prime_UTR
CAAGGAATATGTTGGCAGAA+AGG 0.511208 8_4:+44959307 Msa1327640:three_prime_UTR
AGTAGGGCAATCAAGTAGCC+TGG 0.511327 8_4:+44958390 Msa1327640:three_prime_UTR
ATTTCCTCTTGGCAAATGCC+GGG 0.512706 8_4:-44959824 None:intergenic
TTTGCCCCTAACAATCCAAA+AGG 0.515576 8_4:+44958565 Msa1327640:three_prime_UTR
ATTTAATTCCTATTGATCAT+GGG 0.515719 8_4:+44958974 Msa1327640:three_prime_UTR
CCATATGCTTCATAATATCC+AGG 0.516408 8_4:-44958408 None:intergenic
GTTTCAAGAGCTGCTGTACC+CGG 0.517286 8_4:+44959806 Msa1327640:three_prime_UTR
CCTCCAAGCCCACTATTCAC+TGG 0.518053 8_4:-44958475 None:intergenic
GGCGAATGTCTTTATTCGAT+GGG 0.518959 8_4:+44957357 Msa1327640:three_prime_UTR
GTGATCAATATGTATCAGAC+AGG 0.520932 8_4:+44957395 Msa1327640:three_prime_UTR
TGGCGAATGTCTTTATTCGA+TGG 0.521344 8_4:+44957356 Msa1327640:three_prime_UTR
TCCTTCAATTCCTTTACTCA+GGG 0.521762 8_4:+44957833 Msa1327640:three_prime_UTR
TTTAGAAGCAAGGAATATGT+TGG 0.522762 8_4:+44959299 Msa1327640:three_prime_UTR
CCTCGTGATGGCCTTGATGT+AGG 0.524447 8_4:+44957776 Msa1327640:three_prime_UTR
CCAGTGAATAGTGGGCTTGG+AGG 0.525249 8_4:+44958475 Msa1327640:three_prime_UTR
TTAGAGAGCTCTCTTCAGTT+GGG 0.526432 8_4:-44958207 None:intergenic
AGGTTGTTTGTTTAGAAGCA+AGG 0.528616 8_4:+44959289 Msa1327640:three_prime_UTR
CAGCCATTTGAGTTTGGACA+GGG 0.529127 8_4:-44958000 None:intergenic
ATGAAAAGTTCCCTGAGTAA+AGG 0.529195 8_4:-44957843 None:intergenic
GCTTGTCTGATAAATAACTT+AGG 0.529627 8_4:+44960130 Msa1327640:three_prime_UTR
ATGTCAACGATGGAGTCAAT+GGG 0.533411 8_4:+44958743 Msa1327640:three_prime_UTR
TGCTGCATATCTCGTCCAGT+GGG 0.534004 8_4:-44958340 None:intergenic
AACATCTCACAATCTTGAGC+AGG 0.536201 8_4:-44959105 None:intergenic
GTGGTCCTATTGAGATAGTA+GGG 0.538139 8_4:+44958374 Msa1327640:three_prime_UTR
GACATCAACAGAGGTGGCCG+TGG 0.538402 8_4:-44957962 None:intergenic
TATCATTCCGAACAGAACTA+AGG 0.539457 8_4:-44958258 None:intergenic
TGGAGGACCCATACTTTGAG+TGG 0.540905 8_4:+44959016 Msa1327640:three_prime_UTR
TTGAAACGTTCAGTTCGGGT+TGG 0.541580 8_4:+44958619 Msa1327640:three_prime_UTR
CAACAAATCTTGCTACTCAC+AGG 0.541765 8_4:+44954777 Msa1327640:CDS
TTAGGATTCTTAACACGGAC+AGG 0.542430 8_4:+44958902 Msa1327640:three_prime_UTR
GCAAAAGGCTCCTCATCTGT+TGG 0.543208 8_4:-44958547 None:intergenic
TATTACTTCCTGAACAAAAG+AGG 0.545249 8_4:+44958502 Msa1327640:three_prime_UTR
CGTCCAGTGGGTGACAAGCA+TGG 0.548654 8_4:-44958328 None:intergenic
ACACACTCTTCAATTCTACA+AGG 0.553688 8_4:-44957528 None:intergenic
AATTAGTGAGTACGCCATGA+TGG 0.553792 8_4:-44956809 None:intergenic
CAAACAACCTCCAGTTCACT+GGG 0.555816 8_4:-44959276 None:intergenic
TGTGGTGTCACGCCTCGTGA+TGG 0.559556 8_4:+44957764 Msa1327640:three_prime_UTR
CATTCTCTTCAGCTCCATCA+TGG 0.559871 8_4:+44956795 Msa1327640:CDS
AAATTGGTGAGATGATGACT+AGG 0.561681 8_4:+44959229 Msa1327640:three_prime_UTR
ATCCAATTCCAGTGAATAGT+GGG 0.562056 8_4:+44958467 Msa1327640:three_prime_UTR
TCCAGGGAGAGAAACTGATC+TGG 0.563062 8_4:-44959442 None:intergenic
GGGAAAAGTGACAAAATCCT+CGG 0.563781 8_4:-44959550 None:intergenic
GTACTAGACTTGCAGAACCT+TGG 0.577912 8_4:+44954728 Msa1327640:CDS
CTCAAGATTGTGAGATGTTG+CGG 0.580351 8_4:+44959109 Msa1327640:three_prime_UTR
TGAGTGAGTAATCTTCACTA+AGG 0.580511 8_4:-44958713 None:intergenic
CATTCGCCACTTACAAGACA+TGG 0.583793 8_4:-44957342 None:intergenic
ATTGTGAAGGCAATGCAGAT+GGG 0.584457 8_4:+44958439 Msa1327640:three_prime_UTR
TTGCTGCATATCTCGTCCAG+TGG 0.584775 8_4:-44958341 None:intergenic
GGAAAAGTGACAAAATCCTC+GGG 0.585282 8_4:-44959549 None:intergenic
AATGAATCCACTCAAAGTAT+GGG 0.589378 8_4:-44959023 None:intergenic
AACTGGGTGTGTATTGGGCA+TGG 0.590862 8_4:+44958123 Msa1327640:three_prime_UTR
ACAGAAGAAGCTTTATTCCA+CGG 0.591260 8_4:+44957945 Msa1327640:three_prime_UTR
CATTCCCGTTTCCAAGTCCA+GGG 0.591971 8_4:-44959458 None:intergenic
CTGATATGACTGAAGATGCA+TGG 0.592888 8_4:+44959766 Msa1327640:three_prime_UTR
GTTGCCAAACTCCAGAGCCA+AGG 0.597260 8_4:-44957914 None:intergenic
AGACTGTGATGTAGCTGGGT+CGG 0.599868 8_4:+44959383 Msa1327640:three_prime_UTR
TTGCCAAACTCCAGAGCCAA+GGG 0.601205 8_4:-44957913 None:intergenic
GGAGTTTCGCAGTGGTGAGG+AGG 0.603373 8_4:+44959251 Msa1327640:three_prime_UTR
ATATAGACTGTGATGTAGCT+GGG 0.606383 8_4:+44959379 Msa1327640:three_prime_UTR
AGACATTAGGATTCTTAACA+CGG 0.607966 8_4:+44958897 Msa1327640:three_prime_UTR
CAGAAACAGATACAGAGGCT+TGG 0.608792 8_4:+44959861 Msa1327640:three_prime_UTR
GATGTAAGAAAGCTCATCCT+CGG 0.608887 8_4:-44959070 None:intergenic
TTGTTGTCTCACGCAAATCG+CGG 0.609983 8_4:+44957419 Msa1327640:three_prime_UTR
CCATTATCCGAACAATTCGA+CGG 0.610177 8_4:+44956746 Msa1327640:CDS
AAGGTTACGCGTAAGAAGAA+GGG 0.612709 8_4:-44958284 None:intergenic
TTGTGAAGGCAATGCAGATG+GGG 0.617717 8_4:+44958440 Msa1327640:three_prime_UTR
ACTAGCTGACACCTACATCA+AGG 0.617811 8_4:-44957787 None:intergenic
TATTATGAAGCATATGGTCA+AGG 0.618282 8_4:+44958414 Msa1327640:three_prime_UTR
TCATCCCTCAAGTCAGTCTG+TGG 0.619607 8_4:-44959342 None:intergenic
TTCGGCAAGGCACAGACCAT+AGG 0.620750 8_4:-44959208 None:intergenic
TATCTCCACAGACTGACTTG+AGG 0.623694 8_4:+44959337 Msa1327640:three_prime_UTR
GTTGTCTCACGCAAATCGCG+GGG 0.624018 8_4:+44957421 Msa1327640:three_prime_UTR
GTAATCTTCACTAAGGCAGT+CGG 0.624294 8_4:-44958706 None:intergenic
TTACAGCAATTCTTACGGCA+CGG 0.624501 8_4:-44960030 None:intergenic
TCAATATTTAATGTCAACGA+TGG 0.626920 8_4:+44958733 Msa1327640:three_prime_UTR
ATTCTTAACACGGACAGGCA+CGG 0.628748 8_4:+44958907 Msa1327640:three_prime_UTR
TTTGTTAGTTAGAAAAGTCG+GGG 0.629850 8_4:+44958936 Msa1327640:three_prime_UTR
CAAATTGTACGAGAGCATTG+AGG 0.630368 8_4:+44959497 Msa1327640:three_prime_UTR
TAGGGAGTTTCGCAGTGGTG+AGG 0.635681 8_4:+44959248 Msa1327640:three_prime_UTR
TCTCACTCTGAAGATGACAA+TGG 0.643746 8_4:+44959407 Msa1327640:three_prime_UTR
AATTGGTGAGATGATGACTA+GGG 0.645816 8_4:+44959230 Msa1327640:three_prime_UTR
TACGATGCACAGCAGTAACA+GGG 0.647251 8_4:-44958864 None:intergenic
ATGCTCATACTGTGAAGAGG+AGG 0.648058 8_4:+44958164 Msa1327640:three_prime_UTR
GGTCCTCCAAAGCTTCTGGA+AGG 0.648444 8_4:-44959002 None:intergenic
ACAATGCTCATACTGTGAAG+AGG 0.649410 8_4:+44958161 Msa1327640:three_prime_UTR
TATGGTCAAGGACATTGTGA+AGG 0.651183 8_4:+44958426 Msa1327640:three_prime_UTR
AGATTGTGAGATGTTGCGGA+AGG 0.652349 8_4:+44959113 Msa1327640:three_prime_UTR
ATCTTCACTAAGGCAGTCGG+AGG 0.653479 8_4:-44958703 None:intergenic
AAATACCAGAAGCATTCAGG+TGG 0.655198 8_4:+44959648 Msa1327640:three_prime_UTR
GGAACTGCCTATGATTCGGG+AGG 0.655628 8_4:+44959134 Msa1327640:three_prime_UTR
TCATCTCACCAATTTCGGCA+AGG 0.656399 8_4:-44959221 None:intergenic
TGGGAGGGAGACAATCTAGT+GGG 0.658573 8_4:+44958074 Msa1327640:three_prime_UTR
AAACATCCAGAGTAAGAAGG+TGG 0.658683 8_4:+44958768 Msa1327640:three_prime_UTR
GGAGGAACCCAGTGAACTGG+AGG 0.660570 8_4:+44959269 Msa1327640:three_prime_UTR
GGCTTCAATTCCATTCTCCG+AGG 0.660851 8_4:+44959053 Msa1327640:three_prime_UTR
AATCAAAACAACGGTAACAG+AGG 0.660988 8_4:-44960201 None:intergenic
AGTGGGTGACAAGCATGGAG+TGG 0.664909 8_4:-44958323 None:intergenic
CAGTAATCAAATCAAAACAA+CGG 0.671157 8_4:-44960210 None:intergenic
AATTTCTTGATTCAATCACG+TGG 0.672691 8_4:+44956828 Msa1327640:exon
TCACTTGCATCAAAATCATG+AGG 0.674635 8_4:-44958823 None:intergenic
TTGCAAATAGCCAAATACCA+AGG 0.674842 8_4:-44954745 Msa1327630:intron
TGTACCCGGCATTTGCCAAG+AGG 0.676826 8_4:+44959820 Msa1327640:three_prime_UTR
AATAGTGAAACCAACAGATG+AGG 0.677779 8_4:+44958537 Msa1327640:three_prime_UTR
GAGGGAGACAATCTAGTGGG+AGG 0.681797 8_4:+44958077 Msa1327640:three_prime_UTR
GAGAATGGAATTGAAGCCTG+AGG 0.682346 8_4:-44959048 None:intergenic
TTACGAGACATCAACAGAGG+TGG 0.683880 8_4:-44957968 None:intergenic
ATGGGAGGGAGACAATCTAG+TGG 0.684867 8_4:+44958073 Msa1327640:three_prime_UTR
TAGGTCAGAAACAGATACAG+AGG 0.685042 8_4:+44959856 Msa1327640:three_prime_UTR
ATTGTACGAGAGCATTGAGG+AGG 0.691111 8_4:+44959500 Msa1327640:three_prime_UTR
TCAATGTACTCTCTACCAAG+CGG 0.695082 8_4:-44958040 None:intergenic
TCGCCACTTACAAGACATGG+TGG 0.708932 8_4:-44957339 None:intergenic
AGGTGATGGAGAATATCCCG+AGG 0.710988 8_4:+44959533 Msa1327640:three_prime_UTR
CCTACATCAAGGCCATCACG+AGG 0.715377 8_4:-44957776 None:intergenic
ATGACTAGGGAGTTTCGCAG+TGG 0.731477 8_4:+44959243 Msa1327640:three_prime_UTR
TCATCTTCAAAACTGGCACG+AGG 0.736726 8_4:-44959886 None:intergenic
GATTTACGAGACATCAACAG+AGG 0.758147 8_4:-44957971 None:intergenic
CTTAACACGGACAGGCACGG+TGG 0.765035 8_4:+44958910 Msa1327640:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAATTGTATGAATA+TGG - chr8_4:44955212-44955231 Msa1327630:intron 10.0%
!!! TTATTTTTTAAATATCTACA+TGG + chr8_4:44955246-44955265 Msa1327640:intron 10.0%
!! AATGAGATATTAAATAAATA+AGG - chr8_4:44955455-44955474 Msa1327630:intron 10.0%
!!! ATTTATGAGTTTATTAATTT+TGG + chr8_4:44957039-44957058 Msa1327640:intron 10.0%
!! AAATTCAATAAATCTAAGAA+TGG + chr8_4:44954908-44954927 Msa1327640:intron 15.0%
!! AATTTAATCTCATGATATAT+TGG + chr8_4:44955834-44955853 Msa1327640:intron 15.0%
!! ATTCTTTAATTAACCATATA+TGG - chr8_4:44956107-44956126 Msa1327630:intron 15.0%
!!! AATATTTCAATTGATAACCA+AGG - chr8_4:44954867-44954886 Msa1327630:intron 20.0%
!! TATGAATATGGAAAACTTTA+TGG - chr8_4:44955200-44955219 Msa1327630:intron 20.0%
!! GTTCAATATATAACTATTGT+CGG + chr8_4:44955326-44955345 Msa1327640:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG - chr8_4:44955358-44955377 Msa1327630:intron 20.0%
!! TCTCCACAATAATAAAATAA+GGG + chr8_4:44955486-44955505 Msa1327640:intron 20.0%
!!! TTACCCTTATTTTATTATTG+TGG - chr8_4:44955492-44955511 Msa1327630:intron 20.0%
!! TTATTAGTTACAACTTACAA+CGG - chr8_4:44955626-44955645 Msa1327630:intron 20.0%
!! TATACATCGATACTATTATA+TGG - chr8_4:44955812-44955831 Msa1327630:intron 20.0%
!!! TGATATATTGGTTTTTGATA+AGG + chr8_4:44955846-44955865 Msa1327640:intron 20.0%
!!! CATAACTACTATTTCTTTTA+TGG - chr8_4:44956146-44956165 Msa1327630:intron 20.0%
!!! GTTTTTTTTGGATTAAACAA+AGG - chr8_4:44956234-44956253 Msa1327630:intron 20.0%
!!! TTTCTTGTTAATTTTCTTTG+TGG + chr8_4:44956912-44956931 Msa1327640:intron 20.0%
!!! TTAGATTCTTTGATTTTTTC+TGG + chr8_4:44956965-44956984 Msa1327640:intron 20.0%
!! TTTGAAAATATTGACAAACA+AGG + chr8_4:44957287-44957306 Msa1327640:intron 20.0%
!! CAAATCAAATCTATTTGAAT+TGG - chr8_4:44957482-44957501 None:intergenic 20.0%
!!! AATTTGTTAGTTAGAAAAGT+CGG + chr8_4:44958934-44958953 Msa1327640:three_prime_UTR 20.0%
!! ATTTAATTCCTATTGATCAT+GGG + chr8_4:44958974-44958993 Msa1327640:three_prime_UTR 20.0%
!!! TTTATAACAGGTTGTTATTA+GGG + chr8_4:44959954-44959973 Msa1327640:three_prime_UTR 20.0%
!!! TTTAATCTTTTTCTTCCATA+TGG + chr8_4:44960108-44960127 Msa1327640:three_prime_UTR 20.0%
! TATATCAATATGCTTGTCTA+TGG + chr8_4:44954800-44954819 Msa1327640:intron 25.0%
!! AAATCTAAGAATGGAAGTTT+TGG + chr8_4:44954917-44954936 Msa1327640:intron 25.0%
!! AATCTAAGAATGGAAGTTTT+GGG + chr8_4:44954918-44954937 Msa1327640:intron 25.0%
! CTCTCCACAATAATAAAATA+AGG + chr8_4:44955485-44955504 Msa1327640:intron 25.0%
! ATGTAAAGTGACACTTAAAT+AGG + chr8_4:44955548-44955567 Msa1327640:intron 25.0%
! TTCAAAAGTGACACTTAAAA+AGG + chr8_4:44955584-44955603 Msa1327640:intron 25.0%
! ATGAAACTAATCTAAGGAAA+CGG - chr8_4:44955772-44955791 Msa1327630:intron 25.0%
!!! TTTCCTTAGATTAGTTTCAT+AGG + chr8_4:44955772-44955791 Msa1327640:intron 25.0%
! TTACCTATGAAACTAATCTA+AGG - chr8_4:44955778-44955797 Msa1327630:intron 25.0%
! TATTGAAACAATTCTAGATC+AGG + chr8_4:44955884-44955903 Msa1327640:intron 25.0%
! ACATAGTTCAAATTACATGA+TGG + chr8_4:44955920-44955939 Msa1327640:intron 25.0%
! TTGGATTAAACAAAGGAATA+AGG - chr8_4:44956227-44956246 Msa1327630:intron 25.0%
! AAAAGGATAGTATAATGACA+AGG + chr8_4:44956259-44956278 Msa1327640:intron 25.0%
! TATAATGACAAGGACAATAT+GGG + chr8_4:44956269-44956288 Msa1327640:intron 25.0%
! ATAAAGATTCGAAAAGAAAC+AGG + chr8_4:44957169-44957188 Msa1327640:intron 25.0%
!!! TACTTGCTGTTAATGATTTT+TGG + chr8_4:44957639-44957658 Msa1327640:intron 25.0%
! GAAGATTCTATCAAAATTCT+CGG - chr8_4:44957727-44957746 None:intergenic 25.0%
!! TCATTTTCATTAATGATCGT+TGG + chr8_4:44957862-44957881 Msa1327640:three_prime_UTR 25.0%
!! CATTTTCATTAATGATCGTT+GGG + chr8_4:44957863-44957882 Msa1327640:three_prime_UTR 25.0%
!! ATTTTCATTAATGATCGTTG+GGG + chr8_4:44957864-44957883 Msa1327640:three_prime_UTR 25.0%
!! TACATTGAGAAAAAAAGCAT+GGG + chr8_4:44958055-44958074 Msa1327640:three_prime_UTR 25.0%
! TCAATATTTAATGTCAACGA+TGG + chr8_4:44958733-44958752 Msa1327640:three_prime_UTR 25.0%
!! ATTTGTTAGTTAGAAAAGTC+GGG + chr8_4:44958935-44958954 Msa1327640:three_prime_UTR 25.0%
! GATTTAATTCCTATTGATCA+TGG + chr8_4:44958973-44958992 Msa1327640:three_prime_UTR 25.0%
! GACTATAAAACCAAGAATAA+AGG + chr8_4:44959931-44959950 Msa1327640:three_prime_UTR 25.0%
! CTGTTATAAACCTTTATTCT+TGG - chr8_4:44959944-44959963 None:intergenic 25.0%
! CAAGAATAAAGGTTTATAAC+AGG + chr8_4:44959942-44959961 Msa1327640:three_prime_UTR 25.0%
!! GTTTATAACAGGTTGTTATT+AGG + chr8_4:44959953-44959972 Msa1327640:three_prime_UTR 25.0%
!! TTGTTATTAGGGTTGTTAAT+AGG + chr8_4:44959965-44959984 Msa1327640:three_prime_UTR 25.0%
! CAGTAATCAAATCAAAACAA+CGG - chr8_4:44960213-44960232 None:intergenic 25.0%
! GCATATTATACTTCAATATC+TGG + chr8_4:44960232-44960251 Msa1327640:three_prime_UTR 25.0%
!! TTCAACTTTTCGTTTTGATG+TGG + chr8_4:44954885-44954904 Msa1327640:intron 30.0%
AAAATGAAATCCAAAGTCTC+TGG - chr8_4:44955052-44955071 Msa1327630:intron 30.0%
TAAACCCTACATACATAGTA+AGG + chr8_4:44955132-44955151 Msa1327640:intron 30.0%
TTCACCTTACTATGTATGTA+GGG - chr8_4:44955139-44955158 Msa1327630:intron 30.0%
ATTCACCTTACTATGTATGT+AGG - chr8_4:44955140-44955159 Msa1327630:intron 30.0%
! GCAACATTTATTGATTGTCT+TGG - chr8_4:44955394-44955413 Msa1327630:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG + chr8_4:44955589-44955608 Msa1327640:intron 30.0%
! GCTTGATGGTATGATTTAAT+TGG - chr8_4:44955750-44955769 Msa1327630:intron 30.0%
AAGCATGCTATAAGAATAGA+TGG - chr8_4:44956049-44956068 Msa1327630:intron 30.0%
TTCATGACTGTTACCATATA+TGG + chr8_4:44956091-44956110 Msa1327640:intron 30.0%
TCCAAAAAAAACAGCAGAAA+AGG + chr8_4:44956242-44956261 Msa1327640:intron 30.0%
!!! TCCTTTTCTGCTGTTTTTTT+TGG - chr8_4:44956246-44956265 Msa1327630:intron 30.0%
GTATAATGACAAGGACAATA+TGG + chr8_4:44956268-44956287 Msa1327640:intron 30.0%
!!! CACTTTTTTGTTACAGCTTA+GGG - chr8_4:44956338-44956357 Msa1327630:intron 30.0%
! TCTGAGATATGATAACAAGA+AGG - chr8_4:44956597-44956616 None:intergenic 30.0%
AATTTCTTGATTCAATCACG+TGG + chr8_4:44956828-44956847 Msa1327640:exon 30.0%
GATGAATGAGTTAGTGAAAA+TGG + chr8_4:44957113-44957132 Msa1327640:intron 30.0%
GTACATTGAGAAAAAAAGCA+TGG + chr8_4:44958054-44958073 Msa1327640:three_prime_UTR 30.0%
! TTTTTGTGCAAACTGAAACT+GGG + chr8_4:44958107-44958126 Msa1327640:three_prime_UTR 30.0%
TATTATGAAGCATATGGTCA+AGG + chr8_4:44958414-44958433 Msa1327640:three_prime_UTR 30.0%
TATTACTTCCTGAACAAAAG+AGG + chr8_4:44958502-44958521 Msa1327640:three_prime_UTR 30.0%
! AAAACCTTTTGGATTGTTAG+GGG - chr8_4:44958572-44958591 None:intergenic 30.0%
! CAAAACCTTTTGGATTGTTA+GGG - chr8_4:44958573-44958592 None:intergenic 30.0%
! ACAAAACCTTTTGGATTGTT+AGG - chr8_4:44958574-44958593 None:intergenic 30.0%
!! AACAATCCAAAAGGTTTTGT+TGG + chr8_4:44958574-44958593 Msa1327640:three_prime_UTR 30.0%
!! ATTTTGATGCAAGTGACTAT+GGG + chr8_4:44958830-44958849 Msa1327640:three_prime_UTR 30.0%
GTATAGGGATATTAGACATT+AGG + chr8_4:44958884-44958903 Msa1327640:three_prime_UTR 30.0%
AGACATTAGGATTCTTAACA+CGG + chr8_4:44958897-44958916 Msa1327640:three_prime_UTR 30.0%
TTTGTTAGTTAGAAAAGTCG+GGG + chr8_4:44958936-44958955 Msa1327640:three_prime_UTR 30.0%
AATGAATCCACTCAAAGTAT+GGG - chr8_4:44959026-44959045 None:intergenic 30.0%
TTTAGAAGCAAGGAATATGT+TGG + chr8_4:44959299-44959318 Msa1327640:three_prime_UTR 30.0%
TATAGTTATGGATTTCCTCT+TGG - chr8_4:44959838-44959857 None:intergenic 30.0%
AAGAGGAAATCCATAACTAT+AGG + chr8_4:44959837-44959856 Msa1327640:three_prime_UTR 30.0%
TTTGAAGATGAGCAATACTT+TGG + chr8_4:44959898-44959917 Msa1327640:three_prime_UTR 30.0%
CCTATTTACAGCAATTCTTA+CGG - chr8_4:44960038-44960057 None:intergenic 30.0%
! AATTGCTGTAAATAGGCTTT+TGG + chr8_4:44960042-44960061 Msa1327640:three_prime_UTR 30.0%
TATCAGCTAAGAGTAGAATT+TGG + chr8_4:44960065-44960084 Msa1327640:three_prime_UTR 30.0%
TATTTATCAGACAAGCCATA+TGG - chr8_4:44960126-44960145 None:intergenic 30.0%
GCTTGTCTGATAAATAACTT+AGG + chr8_4:44960130-44960149 Msa1327640:three_prime_UTR 30.0%
TTGCAAATAGCCAAATACCA+AGG - chr8_4:44954748-44954767 Msa1327630:intron 35.0%
ATCAATATGCTTGTCTATGG+TGG + chr8_4:44954803-44954822 Msa1327640:intron 35.0%
ATCTCAAACTAGATTTGCGA+AGG - chr8_4:44954950-44954969 Msa1327630:intron 35.0%
! AGATCAAACTTGCTTCATGA+TGG + chr8_4:44954966-44954985 Msa1327640:intron 35.0%
! GATCAAACTTGCTTCATGAT+GGG + chr8_4:44954967-44954986 Msa1327640:intron 35.0%
! ATCAAACTTGCTTCATGATG+GGG + chr8_4:44954968-44954987 Msa1327640:intron 35.0%
! ATAGATGGAGTTGGATTAGA+TGG - chr8_4:44956034-44956053 Msa1327630:intron 35.0%
GCTATAAGAATAGATGGAGT+TGG - chr8_4:44956043-44956062 Msa1327630:intron 35.0%
!!! CCACTTTTTTGTTACAGCTT+AGG - chr8_4:44956339-44956358 Msa1327630:intron 35.0%
CCTAAGCTGTAACAAAAAAG+TGG + chr8_4:44956336-44956355 Msa1327640:intron 35.0%
! AAATGGAAGAGTCTAGAACA+TGG - chr8_4:44956484-44956503 None:intergenic 35.0%
TGGTTAACAAATTGTAACCG+TGG - chr8_4:44956540-44956559 None:intergenic 35.0%
!! CGGTTACAATTTGTTAACCA+CGG + chr8_4:44956540-44956559 Msa1327640:intron 35.0%
AGAATAACCGTCGAATTGTT+CGG - chr8_4:44956756-44956775 None:intergenic 35.0%
! CGGTTATTCTGAAGATTGTT+CGG + chr8_4:44956766-44956785 Msa1327640:CDS 35.0%
GTGATCAATATGTATCAGAC+AGG + chr8_4:44957395-44957414 Msa1327640:three_prime_UTR 35.0%
ACACACTCTTCAATTCTACA+AGG - chr8_4:44957531-44957550 None:intergenic 35.0%
! AATCTGTGAGCTTTGTAGAA+TGG + chr8_4:44957553-44957572 Msa1327640:three_prime_UTR 35.0%
! CATGAATTTGCAGCTTTTTG+TGG + chr8_4:44957746-44957765 Msa1327640:three_prime_UTR 35.0%
TCCTTCAATTCCTTTACTCA+GGG + chr8_4:44957833-44957852 Msa1327640:three_prime_UTR 35.0%
ATGAAAAGTTCCCTGAGTAA+AGG - chr8_4:44957846-44957865 None:intergenic 35.0%
!! ACAGAAGAAGCTTTATTCCA+CGG + chr8_4:44957945-44957964 Msa1327640:three_prime_UTR 35.0%
TCTGTTGATGTCTCGTAAAT+CGG + chr8_4:44957973-44957992 Msa1327640:three_prime_UTR 35.0%
! ATTGAGAAAAAAAGCATGGG+AGG + chr8_4:44958058-44958077 Msa1327640:three_prime_UTR 35.0%
! TTGAGAAAAAAAGCATGGGA+GGG + chr8_4:44958059-44958078 Msa1327640:three_prime_UTR 35.0%
! GTTTTTGTGCAAACTGAAAC+TGG + chr8_4:44958106-44958125 Msa1327640:three_prime_UTR 35.0%
! AAGAGAGCTCTCTAACTTTT+GGG + chr8_4:44958215-44958234 Msa1327640:three_prime_UTR 35.0%
!! ACAATGACCTTAGTTCTGTT+CGG + chr8_4:44958251-44958270 Msa1327640:three_prime_UTR 35.0%
TATCATTCCGAACAGAACTA+AGG - chr8_4:44958261-44958280 None:intergenic 35.0%
ATGCAGCAAAAAGATAAGAG+TGG + chr8_4:44958355-44958374 Msa1327640:three_prime_UTR 35.0%
CCATATGCTTCATAATATCC+AGG - chr8_4:44958411-44958430 None:intergenic 35.0%
CCTGGATATTATGAAGCATA+TGG + chr8_4:44958408-44958427 Msa1327640:three_prime_UTR 35.0%
ATCCAATTCCAGTGAATAGT+GGG + chr8_4:44958467-44958486 Msa1327640:three_prime_UTR 35.0%
AATAGTGAAACCAACAGATG+AGG + chr8_4:44958537-44958556 Msa1327640:three_prime_UTR 35.0%
TGAGTGAGTAATCTTCACTA+AGG - chr8_4:44958716-44958735 None:intergenic 35.0%
GAAAAACATCCAGAGTAAGA+AGG + chr8_4:44958765-44958784 Msa1327640:three_prime_UTR 35.0%
TCACTTGCATCAAAATCATG+AGG - chr8_4:44958826-44958845 None:intergenic 35.0%
!! GATTTTGATGCAAGTGACTA+TGG + chr8_4:44958829-44958848 Msa1327640:three_prime_UTR 35.0%
CAATGAATCCACTCAAAGTA+TGG - chr8_4:44959027-44959046 None:intergenic 35.0%
! CATACTTTGAGTGGATTCAT+TGG + chr8_4:44959025-44959044 Msa1327640:three_prime_UTR 35.0%
GCTTTCTTACATCGAAAATC+TGG + chr8_4:44959080-44959099 Msa1327640:three_prime_UTR 35.0%
AGTCATCATCTCACCAATTT+CGG - chr8_4:44959229-44959248 None:intergenic 35.0%
AAATTGGTGAGATGATGACT+AGG + chr8_4:44959229-44959248 Msa1327640:three_prime_UTR 35.0%
AATTGGTGAGATGATGACTA+GGG + chr8_4:44959230-44959249 Msa1327640:three_prime_UTR 35.0%
AGGTTGTTTGTTTAGAAGCA+AGG + chr8_4:44959289-44959308 Msa1327640:three_prime_UTR 35.0%
AAGGAATATGTTGGCAGAAA+GGG + chr8_4:44959308-44959327 Msa1327640:three_prime_UTR 35.0%
CATCACAGTCTATATCAAAC+AGG - chr8_4:44959374-44959393 None:intergenic 35.0%
ATATAGACTGTGATGTAGCT+GGG + chr8_4:44959379-44959398 Msa1327640:three_prime_UTR 35.0%
TCTCGTACAATTTGGAGAAT+GGG - chr8_4:44959491-44959510 None:intergenic 35.0%
AACATCATGTTAAGTGAGAC+AGG + chr8_4:44959621-44959640 Msa1327640:three_prime_UTR 35.0%
!! CTGTTTCTGACCTATAGTTA+TGG - chr8_4:44959850-44959869 None:intergenic 35.0%
GTATTGCTCATCTTCAAAAC+TGG - chr8_4:44959896-44959915 None:intergenic 35.0%
GCAATACTTTGGTAAGATAG+TGG + chr8_4:44959909-44959928 Msa1327640:three_prime_UTR 35.0%
! GGTTGTTGTTAAGATAGTTC+TGG + chr8_4:44959986-44960005 Msa1327640:three_prime_UTR 35.0%
CCGTAAGAATTGCTGTAAAT+AGG + chr8_4:44960035-44960054 Msa1327640:three_prime_UTR 35.0%
AATCAAAACAACGGTAACAG+AGG - chr8_4:44960204-44960223 None:intergenic 35.0%
ACTTGCAGAACCTTGGTATT+TGG + chr8_4:44954735-44954754 Msa1327640:CDS 40.0%
CAACAAATCTTGCTACTCAC+AGG + chr8_4:44954777-44954796 Msa1327640:CDS 40.0%
AATATGCTTGTCTATGGTGG+TGG + chr8_4:44954806-44954825 Msa1327640:intron 40.0%
GAAACTACAACAATGAGCCT+TGG + chr8_4:44954847-44954866 Msa1327640:intron 40.0%
!!! CTTCATGATGGGGTTTTAGA+TGG + chr8_4:44954978-44954997 Msa1327640:intron 40.0%
TTTAGATGGCTGCTTCATAG+CGG + chr8_4:44954992-44955011 Msa1327640:intron 40.0%
TGACACTTAAAAAGGAACGG+AGG + chr8_4:44955592-44955611 Msa1327640:intron 40.0%
GACACTTAAAAAGGAACGGA+GGG + chr8_4:44955593-44955612 Msa1327640:intron 40.0%
TAGAAGCTATAGACAGTGGA+TGG - chr8_4:44955702-44955721 Msa1327630:intron 40.0%
GACATAGAAGCTATAGACAG+TGG - chr8_4:44955706-44955725 Msa1327630:intron 40.0%
AATCTAAGGAAACGGCTTGA+TGG - chr8_4:44955764-44955783 Msa1327630:intron 40.0%
! ATGGAGTTGGATTAGATGGA+GGG - chr8_4:44956030-44956049 Msa1327630:intron 40.0%
GGTAACAGTCATGAAAACCA+CGG - chr8_4:44956086-44956105 Msa1327630:intron 40.0%
ATTTATGAGACATTGGCCGT+TGG - chr8_4:44956446-44956465 Msa1327630:CDS 40.0%
GCGTTGGATTTATGAGACAT+TGG - chr8_4:44956453-44956472 Msa1327630:CDS 40.0%
CCTTCTCTTTCTTGAGGAAA+TGG - chr8_4:44956501-44956520 None:intergenic 40.0%
CCATTTCCTCAAGAAAGAGA+AGG + chr8_4:44956498-44956517 Msa1327640:intron 40.0%
TTTCCTCAAGAAAGAGAAGG+CGG + chr8_4:44956501-44956520 Msa1327640:intron 40.0%
CCATTATCCGAACAATTCGA+CGG + chr8_4:44956746-44956765 Msa1327640:CDS 40.0%
AATTAGTGAGTACGCCATGA+TGG - chr8_4:44956812-44956831 None:intergenic 40.0%
TTCCTTAAGCATGTTATCCC+AGG + chr8_4:44957310-44957329 Msa1327640:intron 40.0%
AACCTGGGATAACATGCTTA+AGG - chr8_4:44957315-44957334 None:intergenic 40.0%
TGGCGAATGTCTTTATTCGA+TGG + chr8_4:44957356-44957375 Msa1327640:three_prime_UTR 40.0%
GGCGAATGTCTTTATTCGAT+GGG + chr8_4:44957357-44957376 Msa1327640:three_prime_UTR 40.0%
CGATGGGACAAAGTTCAATT+TGG + chr8_4:44957373-44957392 Msa1327640:three_prime_UTR 40.0%
CTCCTTCAATTCCTTTACTC+AGG + chr8_4:44957832-44957851 Msa1327640:three_prime_UTR 40.0%
TCCCTGAGTAAAGGAATTGA+AGG - chr8_4:44957837-44957856 None:intergenic 40.0%
TTCTTTCAAACAAGTGCCCT+TGG + chr8_4:44957897-44957916 Msa1327640:three_prime_UTR 40.0%
GATTTACGAGACATCAACAG+AGG - chr8_4:44957974-44957993 None:intergenic 40.0%
! AAGCAACAGCCATTTGAGTT+TGG - chr8_4:44958009-44958028 None:intergenic 40.0%
TCAATGTACTCTCTACCAAG+CGG - chr8_4:44958043-44958062 None:intergenic 40.0%
AACTGAAACTGGGTGTGTAT+TGG + chr8_4:44958117-44958136 Msa1327640:three_prime_UTR 40.0%
ACTGAAACTGGGTGTGTATT+GGG + chr8_4:44958118-44958137 Msa1327640:three_prime_UTR 40.0%
ACAATGCTCATACTGTGAAG+AGG + chr8_4:44958161-44958180 Msa1327640:three_prime_UTR 40.0%
TTAGAGAGCTCTCTTCAGTT+GGG - chr8_4:44958210-44958229 None:intergenic 40.0%
! GAAGAGAGCTCTCTAACTTT+TGG + chr8_4:44958214-44958233 Msa1327640:three_prime_UTR 40.0%
! AGAGAGCTCTCTAACTTTTG+GGG + chr8_4:44958216-44958235 Msa1327640:three_prime_UTR 40.0%
AAGGTTACGCGTAAGAAGAA+GGG - chr8_4:44958287-44958306 None:intergenic 40.0%
TAAGGTTACGCGTAAGAAGA+AGG - chr8_4:44958288-44958307 None:intergenic 40.0%
TGGATGAACTTCTGTGCATA+AGG - chr8_4:44958306-44958325 None:intergenic 40.0%
AGTGGTCCTATTGAGATAGT+AGG + chr8_4:44958373-44958392 Msa1327640:three_prime_UTR 40.0%
GTGGTCCTATTGAGATAGTA+GGG + chr8_4:44958374-44958393 Msa1327640:three_prime_UTR 40.0%
GATTGCCCTACTATCTCAAT+AGG - chr8_4:44958382-44958401 None:intergenic 40.0%
TATGGTCAAGGACATTGTGA+AGG + chr8_4:44958426-44958445 Msa1327640:three_prime_UTR 40.0%
ATTGTGAAGGCAATGCAGAT+GGG + chr8_4:44958439-44958458 Msa1327640:three_prime_UTR 40.0%
GATCCAATTCCAGTGAATAG+TGG + chr8_4:44958466-44958485 Msa1327640:three_prime_UTR 40.0%
TTTGGATTGTTAGGGGCAAA+AGG - chr8_4:44958565-44958584 None:intergenic 40.0%
TTTGCCCCTAACAATCCAAA+AGG + chr8_4:44958565-44958584 Msa1327640:three_prime_UTR 40.0%
! GCTTTGCCAACAAAACCTTT+TGG - chr8_4:44958583-44958602 None:intergenic 40.0%
! CAGGTTTGAAACGTTCAGTT+CGG + chr8_4:44958614-44958633 Msa1327640:three_prime_UTR 40.0%
! AGGTTTGAAACGTTCAGTTC+GGG + chr8_4:44958615-44958634 Msa1327640:three_prime_UTR 40.0%
GCTGCTTATCTACTTGACTA+TGG + chr8_4:44958664-44958683 Msa1327640:three_prime_UTR 40.0%
GTAATCTTCACTAAGGCAGT+CGG - chr8_4:44958709-44958728 None:intergenic 40.0%
AATGTCAACGATGGAGTCAA+TGG + chr8_4:44958742-44958761 Msa1327640:three_prime_UTR 40.0%
ATGTCAACGATGGAGTCAAT+GGG + chr8_4:44958743-44958762 Msa1327640:three_prime_UTR 40.0%
AAACATCCAGAGTAAGAAGG+TGG + chr8_4:44958768-44958787 Msa1327640:three_prime_UTR 40.0%
TTACTGCTGTGCATCGTATA+GGG + chr8_4:44958869-44958888 Msa1327640:three_prime_UTR 40.0%
TTAGGATTCTTAACACGGAC+AGG + chr8_4:44958902-44958921 Msa1327640:three_prime_UTR 40.0%
GATGTAAGAAAGCTCATCCT+CGG - chr8_4:44959073-44959092 None:intergenic 40.0%
AACATCTCACAATCTTGAGC+AGG - chr8_4:44959108-44959127 None:intergenic 40.0%
CTCAAGATTGTGAGATGTTG+CGG + chr8_4:44959109-44959128 Msa1327640:three_prime_UTR 40.0%
CAAGGAATATGTTGGCAGAA+AGG + chr8_4:44959307-44959326 Msa1327640:three_prime_UTR 40.0%
GATATAGACTGTGATGTAGC+TGG + chr8_4:44959378-44959397 Msa1327640:three_prime_UTR 40.0%
! TCTCACTCTGAAGATGACAA+TGG + chr8_4:44959407-44959426 Msa1327640:three_prime_UTR 40.0%
AGAGAAACTGATCTGGTTAG+AGG - chr8_4:44959438-44959457 None:intergenic 40.0%
CTCTCGTACAATTTGGAGAA+TGG - chr8_4:44959492-44959511 None:intergenic 40.0%
CTCAATGCTCTCGTACAATT+TGG - chr8_4:44959499-44959518 None:intergenic 40.0%
!! CAAATTGTACGAGAGCATTG+AGG + chr8_4:44959497-44959516 Msa1327640:three_prime_UTR 40.0%
GGAAAAGTGACAAAATCCTC+GGG - chr8_4:44959552-44959571 None:intergenic 40.0%
GGGAAAAGTGACAAAATCCT+CGG - chr8_4:44959553-44959572 None:intergenic 40.0%
!!! ACAGAAAGTTTTGAAACCGC+TGG - chr8_4:44959591-44959610 None:intergenic 40.0%
CTGAATGCTTCTGGTATTTC+TGG - chr8_4:44959647-44959666 None:intergenic 40.0%
!! CAGAAATACCAGAAGCATTC+AGG + chr8_4:44959645-44959664 Msa1327640:three_prime_UTR 40.0%
!! AAATACCAGAAGCATTCAGG+TGG + chr8_4:44959648-44959667 Msa1327640:three_prime_UTR 40.0%
TCAGGTGGAAAAGCAGATAA+TGG + chr8_4:44959663-44959682 Msa1327640:three_prime_UTR 40.0%
CTGATATGACTGAAGATGCA+TGG + chr8_4:44959766-44959785 Msa1327640:three_prime_UTR 40.0%
AGATGCATGGACAATGTTTC+TGG + chr8_4:44959779-44959798 Msa1327640:three_prime_UTR 40.0%
TAGGTCAGAAACAGATACAG+AGG + chr8_4:44959856-44959875 Msa1327640:three_prime_UTR 40.0%
TTACAGCAATTCTTACGGCA+CGG - chr8_4:44960033-44960052 None:intergenic 40.0%
GTACTAGACTTGCAGAACCT+TGG + chr8_4:44954728-44954747 Msa1327640:CDS 45.0%
TTAGATGGCTGCTTCATAGC+GGG + chr8_4:44954993-44955012 Msa1327640:intron 45.0%
AACTCACTGACCAGAGACTT+TGG + chr8_4:44955039-44955058 Msa1327640:intron 45.0%
! GATGGAGTTGGATTAGATGG+AGG - chr8_4:44956031-44956050 Msa1327630:intron 45.0%
AACAGTCATGAAAACCACGG+TGG - chr8_4:44956083-44956102 Msa1327630:intron 45.0%
! CCACTGCTAACTTGTCTATC+TGG - chr8_4:44956300-44956319 Msa1327630:intron 45.0%
CCAGATAGACAAGTTAGCAG+TGG + chr8_4:44956297-44956316 Msa1327640:intron 45.0%
GAAAAGTGGCAGAGAGTGAT+TGG - chr8_4:44956364-44956383 Msa1327630:intron 45.0%
!!! CTGCCACTTTTCCTCTTTGA+CGG + chr8_4:44956372-44956391 Msa1327640:intron 45.0%
TGACCGTCAAAGAGGAAAAG+TGG - chr8_4:44956378-44956397 Msa1327630:intron 45.0%
!! AATGGATTGGAAGGTCACGT+GGG - chr8_4:44956404-44956423 Msa1327630:intron 45.0%
GAACATGGAATTTCGAGCGT+TGG - chr8_4:44956469-44956488 Msa1327630:CDS 45.0%
!! GCGGTCAAGTTTGTTAACCA+CGG + chr8_4:44956520-44956539 Msa1327640:intron 45.0%
CCGTCGAATTGTTCGGATAA+TGG - chr8_4:44956749-44956768 None:intergenic 45.0%
CATTCTCTTCAGCTCCATCA+TGG + chr8_4:44956795-44956814 Msa1327640:CDS 45.0%
!! AGACATGGTGGATCAAACCT+GGG - chr8_4:44957330-44957349 None:intergenic 45.0%
!! AAGACATGGTGGATCAAACC+TGG - chr8_4:44957331-44957350 None:intergenic 45.0%
GATCCACCATGTCTTGTAAG+TGG + chr8_4:44957336-44957355 Msa1327640:three_prime_UTR 45.0%
CATTCGCCACTTACAAGACA+TGG - chr8_4:44957345-44957364 None:intergenic 45.0%
TTGTTGTCTCACGCAAATCG+CGG + chr8_4:44957419-44957438 Msa1327640:three_prime_UTR 45.0%
ACTAGCTGACACCTACATCA+AGG - chr8_4:44957790-44957809 None:intergenic 45.0%
! TCTGGAGTTTGGCAACTTCT+TGG + chr8_4:44957921-44957940 Msa1327640:three_prime_UTR 45.0%
CTGGAGTTTGGCAACTTCTT+GGG + chr8_4:44957922-44957941 Msa1327640:three_prime_UTR 45.0%
TTACGAGACATCAACAGAGG+TGG - chr8_4:44957971-44957990 None:intergenic 45.0%
! CAGCCATTTGAGTTTGGACA+GGG - chr8_4:44958003-44958022 None:intergenic 45.0%
! ACAGCCATTTGAGTTTGGAC+AGG - chr8_4:44958004-44958023 None:intergenic 45.0%
!! GCTTTATTTCGTAGTCCGCT+TGG + chr8_4:44958025-44958044 Msa1327640:three_prime_UTR 45.0%
GTGTGTATTGGGCATGGAAT+TGG + chr8_4:44958129-44958148 Msa1327640:three_prime_UTR 45.0%
ATGCTCATACTGTGAAGAGG+AGG + chr8_4:44958164-44958183 Msa1327640:three_prime_UTR 45.0%
GTTAGAGAGCTCTCTTCAGT+TGG - chr8_4:44958211-44958230 None:intergenic 45.0%
CATTGTGAAGGCAATGCAGA+TGG + chr8_4:44958438-44958457 Msa1327640:three_prime_UTR 45.0%
TTGTGAAGGCAATGCAGATG+GGG + chr8_4:44958440-44958459 Msa1327640:three_prime_UTR 45.0%
AGCCCACTATTCACTGGAAT+TGG - chr8_4:44958472-44958491 None:intergenic 45.0%
!! ATTCCAGTGAATAGTGGGCT+TGG + chr8_4:44958472-44958491 Msa1327640:three_prime_UTR 45.0%
!!! GGTTTTGTTGGCAAAGCTCT+TGG + chr8_4:44958586-44958605 Msa1327640:three_prime_UTR 45.0%
CGAACTGAACGTTTCAAACC+TGG - chr8_4:44958616-44958635 None:intergenic 45.0%
TTGAAACGTTCAGTTCGGGT+TGG + chr8_4:44958619-44958638 Msa1327640:three_prime_UTR 45.0%
! TGAAACGTTCAGTTCGGGTT+GGG + chr8_4:44958620-44958639 Msa1327640:three_prime_UTR 45.0%
TGCTAACCACCTTCTTACTC+TGG - chr8_4:44958777-44958796 None:intergenic 45.0%
TACGATGCACAGCAGTAACA+GGG - chr8_4:44958867-44958886 None:intergenic 45.0%
ATACGATGCACAGCAGTAAC+AGG - chr8_4:44958868-44958887 None:intergenic 45.0%
GTTACTGCTGTGCATCGTAT+AGG + chr8_4:44958868-44958887 Msa1327640:three_prime_UTR 45.0%
ATTCTTAACACGGACAGGCA+CGG + chr8_4:44958907-44958926 Msa1327640:three_prime_UTR 45.0%
! GTTAGAAAAGTCGGGGCTTT+TGG + chr8_4:44958943-44958962 Msa1327640:three_prime_UTR 45.0%
AGGCAAAGCCCATGATCAAT+AGG - chr8_4:44958985-44959004 None:intergenic 45.0%
GAGAATGGAATTGAAGCCTG+AGG - chr8_4:44959051-44959070 None:intergenic 45.0%
AGATTGTGAGATGTTGCGGA+AGG + chr8_4:44959113-44959132 Msa1327640:three_prime_UTR 45.0%
GGAAGGAACTGCCTATGATT+CGG + chr8_4:44959130-44959149 Msa1327640:three_prime_UTR 45.0%
GAAGGAACTGCCTATGATTC+GGG + chr8_4:44959131-44959150 Msa1327640:three_prime_UTR 45.0%
! ACTCTGCACCATTTTCCTGA+AGG + chr8_4:44959176-44959195 Msa1327640:three_prime_UTR 45.0%
TCATCTCACCAATTTCGGCA+AGG - chr8_4:44959224-44959243 None:intergenic 45.0%
CAAACAACCTCCAGTTCACT+GGG - chr8_4:44959279-44959298 None:intergenic 45.0%
ACAAACAACCTCCAGTTCAC+TGG - chr8_4:44959280-44959299 None:intergenic 45.0%
!! TATCTCCACAGACTGACTTG+AGG + chr8_4:44959337-44959356 Msa1327640:three_prime_UTR 45.0%
!! ATCTCCACAGACTGACTTGA+GGG + chr8_4:44959338-44959357 Msa1327640:three_prime_UTR 45.0%
!! ATTGTACGAGAGCATTGAGG+AGG + chr8_4:44959500-44959519 Msa1327640:three_prime_UTR 45.0%
ATTGAGGAGGAGGAAGAAGA+AGG + chr8_4:44959513-44959532 Msa1327640:three_prime_UTR 45.0%
!!! GCTGGAGTTTTTTCATGAGG+GGG - chr8_4:44959573-44959592 None:intergenic 45.0%
!!! CGCTGGAGTTTTTTCATGAG+GGG - chr8_4:44959574-44959593 None:intergenic 45.0%
!!! CCGCTGGAGTTTTTTCATGA+GGG - chr8_4:44959575-44959594 None:intergenic 45.0%
CCCTCATGAAAAAACTCCAG+CGG + chr8_4:44959572-44959591 Msa1327640:three_prime_UTR 45.0%
!!! ACCGCTGGAGTTTTTTCATG+AGG - chr8_4:44959576-44959595 None:intergenic 45.0%
! CTTTTCCACCTGAATGCTTC+TGG - chr8_4:44959656-44959675 None:intergenic 45.0%
! AAGCTCAAGCTTTGTGAAGC+TGG + chr8_4:44959743-44959762 Msa1327640:three_prime_UTR 45.0%
ATTTCCTCTTGGCAAATGCC+GGG - chr8_4:44959827-44959846 None:intergenic 45.0%
GATTTCCTCTTGGCAAATGC+CGG - chr8_4:44959828-44959847 None:intergenic 45.0%
CAGAAACAGATACAGAGGCT+TGG + chr8_4:44959861-44959880 Msa1327640:three_prime_UTR 45.0%
TCATCTTCAAAACTGGCACG+AGG - chr8_4:44959889-44959908 None:intergenic 45.0%
GCATTACTCTATGCGTTCTC+TGG + chr8_4:44960272-44960291 Msa1327640:three_prime_UTR 45.0%
TGCGTTCTCTGGTCTGTATT+TGG + chr8_4:44960283-44960302 Msa1327640:three_prime_UTR 45.0%
!! TAGATATTTAAAAAATAAAT+TGG - chr8_4:44955244-44955263 Msa1327630:intron 5.0%
GTGGAAAGAGAGAGAACTCG+AGG + chr8_4:44954825-44954844 Msa1327640:intron 50.0%
! GCGGGATTGTGCAGTATTGA+AGG + chr8_4:44955011-44955030 Msa1327640:intron 50.0%
CTTATGCTTCAGTTCCACCG+TGG + chr8_4:44956066-44956085 Msa1327640:intron 50.0%
!! GAATGGATTGGAAGGTCACG+TGG - chr8_4:44956405-44956424 Msa1327630:intron 50.0%
!! CGTGGAGAGAATGGATTGGA+AGG - chr8_4:44956413-44956432 Msa1327630:CDS 50.0%
! TGAGACATTGGCCGTTGGTT+TGG - chr8_4:44956441-44956460 Msa1327630:CDS 50.0%
TGACCGCCTTCTCTTTCTTG+AGG - chr8_4:44956507-44956526 None:intergenic 50.0%
ACGGTTACGATTCACGCGTT+GGG + chr8_4:44956559-44956578 Msa1327640:intron 50.0%
TCGCCACTTACAAGACATGG+TGG - chr8_4:44957342-44957361 None:intergenic 50.0%
TGTTGTCTCACGCAAATCGC+GGG + chr8_4:44957420-44957439 Msa1327640:three_prime_UTR 50.0%
TTGCCAAACTCCAGAGCCAA+GGG - chr8_4:44957916-44957935 None:intergenic 50.0%
CAGCCCTGTCCAAACTCAAA+TGG + chr8_4:44957997-44958016 Msa1327640:three_prime_UTR 50.0%
ATGGGAGGGAGACAATCTAG+TGG + chr8_4:44958073-44958092 Msa1327640:three_prime_UTR 50.0%
TGGGAGGGAGACAATCTAGT+GGG + chr8_4:44958074-44958093 Msa1327640:three_prime_UTR 50.0%
AACTGGGTGTGTATTGGGCA+TGG + chr8_4:44958123-44958142 Msa1327640:three_prime_UTR 50.0%
TGCTGCATATCTCGTCCAGT+GGG - chr8_4:44958343-44958362 None:intergenic 50.0%
TTGCTGCATATCTCGTCCAG+TGG - chr8_4:44958344-44958363 None:intergenic 50.0%
AGTAGGGCAATCAAGTAGCC+TGG + chr8_4:44958390-44958409 Msa1327640:three_prime_UTR 50.0%
! CACTCTCGCCTCTTTTGTTC+AGG - chr8_4:44958513-44958532 None:intergenic 50.0%
GCAAAAGGCTCCTCATCTGT+TGG - chr8_4:44958550-44958569 None:intergenic 50.0%
!! GAAACGTTCAGTTCGGGTTG+GGG + chr8_4:44958621-44958640 Msa1327640:three_prime_UTR 50.0%
ATCTTCACTAAGGCAGTCGG+AGG - chr8_4:44958706-44958725 None:intergenic 50.0%
GCAAGTGACTATGGGACATC+TGG + chr8_4:44958838-44958857 Msa1327640:three_prime_UTR 50.0%
! AAAAGTCGGGGCTTTTGGTG+AGG + chr8_4:44958948-44958967 Msa1327640:three_prime_UTR 50.0%
GCTTTGCCTTCCAGAAGCTT+TGG + chr8_4:44958996-44959015 Msa1327640:three_prime_UTR 50.0%
! TTGCCTTCCAGAAGCTTTGG+AGG + chr8_4:44958999-44959018 Msa1327640:three_prime_UTR 50.0%
TATGGGTCCTCCAAAGCTTC+TGG - chr8_4:44959009-44959028 None:intergenic 50.0%
TGGAGGACCCATACTTTGAG+TGG + chr8_4:44959016-44959035 Msa1327640:three_prime_UTR 50.0%
! TGAGTGGATTCATTGGCCTC+AGG + chr8_4:44959032-44959051 Msa1327640:three_prime_UTR 50.0%
GGCTTCAATTCCATTCTCCG+AGG + chr8_4:44959053-44959072 Msa1327640:three_prime_UTR 50.0%
GAAAGCTCATCCTCGGAGAA+TGG - chr8_4:44959066-44959085 None:intergenic 50.0%
AAGCAAGCCTCCCGAATCAT+AGG - chr8_4:44959144-44959163 None:intergenic 50.0%
! CTGCACCATTTTCCTGAAGG+AGG + chr8_4:44959179-44959198 Msa1327640:three_prime_UTR 50.0%
AGCAGCCTCCTTCAGGAAAA+TGG - chr8_4:44959187-44959206 None:intergenic 50.0%
ATGACTAGGGAGTTTCGCAG+TGG + chr8_4:44959243-44959262 Msa1327640:three_prime_UTR 50.0%
TCATCCCTCAAGTCAGTCTG+TGG - chr8_4:44959345-44959364 None:intergenic 50.0%
AGACTGTGATGTAGCTGGGT+CGG + chr8_4:44959383-44959402 Msa1327640:three_prime_UTR 50.0%
ACCAGATCAGTTTCTCTCCC+TGG + chr8_4:44959441-44959460 Msa1327640:three_prime_UTR 50.0%
TCCAGGGAGAGAAACTGATC+TGG - chr8_4:44959445-44959464 None:intergenic 50.0%
TCAGTTTCTCTCCCTGGACT+TGG + chr8_4:44959447-44959466 Msa1327640:three_prime_UTR 50.0%
TCTCTCCCTGGACTTGGAAA+CGG + chr8_4:44959453-44959472 Msa1327640:three_prime_UTR 50.0%
CATTCCCGTTTCCAAGTCCA+GGG - chr8_4:44959461-44959480 None:intergenic 50.0%
GAGGAGGAAGAAGAAGGTGA+TGG + chr8_4:44959519-44959538 Msa1327640:three_prime_UTR 50.0%
!! AGGTGATGGAGAATATCCCG+AGG + chr8_4:44959533-44959552 Msa1327640:three_prime_UTR 50.0%
TGCAGAAAGCTGCTGCTCAT+TGG - chr8_4:44959724-44959743 None:intergenic 50.0%
GTTTCAAGAGCTGCTGTACC+CGG + chr8_4:44959806-44959825 Msa1327640:three_prime_UTR 50.0%
GTGGGAGATGACCGTCAAAG+AGG - chr8_4:44956386-44956405 Msa1327630:intron 55.0%
GGCACGTGGAGAGAATGGAT+TGG - chr8_4:44956417-44956436 Msa1327630:CDS 55.0%
! TTGGTGGCACGTGGAGAGAA+TGG - chr8_4:44956422-44956441 Msa1327630:CDS 55.0%
TCCACGTGCCACCAAACCAA+CGG + chr8_4:44956427-44956446 Msa1327640:intron 55.0%
!! GACATTGGCCGTTGGTTTGG+TGG - chr8_4:44956438-44956457 Msa1327630:CDS 55.0%
CAACGCGTGAATCGTAACCG+TGG - chr8_4:44956560-44956579 None:intergenic 55.0%
CACGGTTACGATTCACGCGT+TGG + chr8_4:44956558-44956577 Msa1327640:intron 55.0%
GTTGTCTCACGCAAATCGCG+GGG + chr8_4:44957421-44957440 Msa1327640:three_prime_UTR 55.0%
TTGTCTCACGCAAATCGCGG+GGG + chr8_4:44957422-44957441 Msa1327640:three_prime_UTR 55.0%
CCTACATCAAGGCCATCACG+AGG - chr8_4:44957779-44957798 None:intergenic 55.0%
! CCTCGTGATGGCCTTGATGT+AGG + chr8_4:44957776-44957795 Msa1327640:three_prime_UTR 55.0%
CAAACAAGTGCCCTTGGCTC+TGG + chr8_4:44957903-44957922 Msa1327640:three_prime_UTR 55.0%
GTTGCCAAACTCCAGAGCCA+AGG - chr8_4:44957917-44957936 None:intergenic 55.0%
GAGGGAGACAATCTAGTGGG+AGG + chr8_4:44958077-44958096 Msa1327640:three_prime_UTR 55.0%
AGTGGGTGACAAGCATGGAG+TGG - chr8_4:44958326-44958345 None:intergenic 55.0%
ACTCCATGCTTGTCACCCAC+TGG + chr8_4:44958325-44958344 Msa1327640:three_prime_UTR 55.0%
CCTCCAAGCCCACTATTCAC+TGG - chr8_4:44958478-44958497 None:intergenic 55.0%
!! CCAGTGAATAGTGGGCTTGG+AGG + chr8_4:44958475-44958494 Msa1327640:three_prime_UTR 55.0%
GGCAAAGCTCTTGGACAACC+AGG + chr8_4:44958595-44958614 Msa1327640:three_prime_UTR 55.0%
!! TCAGTTCGGGTTGGGGAAAC+TGG + chr8_4:44958628-44958647 Msa1327640:three_prime_UTR 55.0%
! GGTTGGGGAAACTGGCTTCA+GGG + chr8_4:44958636-44958655 Msa1327640:three_prime_UTR 55.0%
GGTCCTCCAAAGCTTCTGGA+AGG - chr8_4:44959005-44959024 None:intergenic 55.0%
! GGAACTGCCTATGATTCGGG+AGG + chr8_4:44959134-44959153 Msa1327640:three_prime_UTR 55.0%
TTCGGCAAGGCACAGACCAT+AGG - chr8_4:44959211-44959230 None:intergenic 55.0%
GGTCTGTGCCTTGCCGAAAT+TGG + chr8_4:44959213-44959232 Msa1327640:three_prime_UTR 55.0%
TAGGGAGTTTCGCAGTGGTG+AGG + chr8_4:44959248-44959267 Msa1327640:three_prime_UTR 55.0%
TGAGGAGGAACCCAGTGAAC+TGG + chr8_4:44959266-44959285 Msa1327640:three_prime_UTR 55.0%
CTCTCCCTGGACTTGGAAAC+GGG + chr8_4:44959454-44959473 Msa1327640:three_prime_UTR 55.0%
CCATTCCCGTTTCCAAGTCC+AGG - chr8_4:44959462-44959481 None:intergenic 55.0%
CCTGGACTTGGAAACGGGAA+TGG + chr8_4:44959459-44959478 Msa1327640:three_prime_UTR 55.0%
!! GTACGAGAGCATTGAGGAGG+AGG + chr8_4:44959503-44959522 Msa1327640:three_prime_UTR 55.0%
TGTACCCGGCATTTGCCAAG+AGG + chr8_4:44959820-44959839 Msa1327640:three_prime_UTR 55.0%
!! TGTGGTGTCACGCCTCGTGA+TGG + chr8_4:44957764-44957783 Msa1327640:three_prime_UTR 60.0%
!! GTGCCCTTGGCTCTGGAGTT+TGG + chr8_4:44957910-44957929 Msa1327640:three_prime_UTR 60.0%
GACATCAACAGAGGTGGCCG+TGG - chr8_4:44957965-44957984 None:intergenic 60.0%
CGTCCAGTGGGTGACAAGCA+TGG - chr8_4:44958331-44958350 None:intergenic 60.0%
! GGGTTGGGGAAACTGGCTTC+AGG + chr8_4:44958635-44958654 Msa1327640:three_prime_UTR 60.0%
CTTAACACGGACAGGCACGG+TGG + chr8_4:44958910-44958929 Msa1327640:three_prime_UTR 60.0%
! AGTCGGGGCTTTTGGTGAGG+TGG + chr8_4:44958951-44958970 Msa1327640:three_prime_UTR 60.0%
CATAGGCAGCAGCCTCCTTC+AGG - chr8_4:44959194-44959213 None:intergenic 60.0%
CTGAAGGAGGCTGCTGCCTA+TGG + chr8_4:44959192-44959211 Msa1327640:three_prime_UTR 60.0%
GGAGTTTCGCAGTGGTGAGG+AGG + chr8_4:44959251-44959270 Msa1327640:three_prime_UTR 60.0%
GGAGGAACCCAGTGAACTGG+AGG + chr8_4:44959269-44959288 Msa1327640:three_prime_UTR 60.0%
!! GCCGTTGGTTTGGTGGCACG+TGG - chr8_4:44956431-44956450 Msa1327630:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 44954689 44960318 44954689 ID=Msa1327640;Name=Msa1327640
chr8_4 mRNA 44954689 44960318 44954689 ID=Msa1327640-mRNA-1;Parent=Msa1327640;Name=Msa1327640-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0.5|0.75|0.33|0.25|4|2933|107
chr8_4 exon 44954689 44954798 44954689 ID=Msa1327640-mRNA-1:exon:12530;Parent=Msa1327640-mRNA-1
chr8_4 exon 44956616 44956849 44956616 ID=Msa1327640-mRNA-1:exon:12531;Parent=Msa1327640-mRNA-1
chr8_4 exon 44957332 44957610 44957332 ID=Msa1327640-mRNA-1:exon:12532;Parent=Msa1327640-mRNA-1
chr8_4 exon 44957685 44960318 44957685 ID=Msa1327640-mRNA-1:exon:12533;Parent=Msa1327640-mRNA-1
chr8_4 CDS 44954689 44954798 44954689 ID=Msa1327640-mRNA-1:cds;Parent=Msa1327640-mRNA-1
chr8_4 CDS 44956616 44956829 44956616 ID=Msa1327640-mRNA-1:cds;Parent=Msa1327640-mRNA-1
chr8_4 three_prime_UTR 44956830 44956849 44956830 ID=Msa1327640-mRNA-1:three_prime_utr;Parent=Msa1327640-mRNA-1
chr8_4 three_prime_UTR 44957332 44957610 44957332 ID=Msa1327640-mRNA-1:three_prime_utr;Parent=Msa1327640-mRNA-1
chr8_4 three_prime_UTR 44957685 44960318 44957685 ID=Msa1327640-mRNA-1:three_prime_utr;Parent=Msa1327640-mRNA-1
Gene Sequence

>Msa1327640

ATGTCGAAGCATCTGTCTTTCAGCTTACTAAAACAAATCGTACTAGACTTGCAGAACCTTGGTATTTGGCTATTTGCAAAGCTCTTTGCAACAAATCTTGCTACTCACAGAGCGAACAAGAAGAAGAAGAAGAAACACAGAGAGATAGAGAGAGAGAGAGAAAGAGCGCGCTTTGTAACTGAAATATCTTCTGAGTTAACTCGAACGAGTTTCTCATACGATTCTCTTCTTTCGTTTCTTCCATTATCCGAACAATTCGACGGTTATTCTGAAGATTGTTCGGATCTCACATTCTCTTCAGCTCCATCATGGCGTACTCACTAA

Protein sequence

>Msa1327640

MSKHLSFSLLKQIVLDLQNLGIWLFAKLFATNLATHRANKKKKKKHREIERERERARFVTEISSELTRTSFSYDSLLSFLPLSEQFDGYSEDCSDLTFSSAPSWRTH*