AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279090 MtrunA17_Chr2g0292021 86.472 547 21 2 1 494 1 547 0.0 931
Msa0279090 MtrunA17_Chr2g0292011 88.235 527 26 2 1 494 1 524 0.0 926
Msa0279090 MtrunA17_Chr7g0237461 84.630 527 28 2 1 494 1 507 0.0 888
Msa0279090 MtrunA17_Chr8g0347561 59.885 521 138 7 1 485 22 507 0.0 595
Msa0279090 MtrunA17_Chr7g0262201 49.225 516 191 3 4 486 1 478 0.0 529
Msa0279090 MtrunA17_Chr7g0262211 49.133 519 193 4 1 486 24 504 0.0 529
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279090 AT2G20340.1 48.263 518 197 3 1 485 9 488 0.0 533
Msa0279090 AT4G28680.1 47.710 524 199 6 1 487 57 542 2.10e-175 504
Msa0279090 AT4G28680.4 47.719 526 198 7 1 487 48 535 1.67e-174 502
Msa0279090 AT4G28680.3 47.719 526 198 7 1 487 57 544 3.26e-174 501
Msa0279090 AT4G28680.2 47.719 526 198 7 1 487 57 544 3.72e-174 501
Msa0279090 AT4G28680.5 45.307 554 198 8 1 487 48 563 5.76e-168 486
Msa0279090 AT2G20340.2 43.822 518 193 3 1 485 9 461 1.47e-164 474
Msa0279090 AT4G28680.7 50.737 339 127 4 1 300 48 385 1.76e-117 352
Msa0279090 AT4G28680.6 50.156 321 121 3 1 282 48 368 8.97e-112 336

Find 66 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGTAAACTTGTTGTTTA+TGG 0.117744 2_3:+12392994 Msa0279090:CDS
TCGCAAAAGATTATGGAATT+TGG 0.134183 2_3:+12393249 Msa0279090:CDS
TACAACCTGTGAAGGTATTT+TGG 0.146910 2_3:+12392918 Msa0279090:CDS
AAACACTTTATCAAAGAATT+TGG 0.150243 2_3:-12393425 None:intergenic
GATAAAATTCTTAGCAAAAT+TGG 0.200556 2_3:+12392961 Msa0279090:CDS
ATTTAGATTGTTGTTGTCTT+TGG 0.242997 2_3:+12393393 Msa0279090:CDS
AACGACGAATTCTGAGTATT+TGG 0.245937 2_3:+12393451 Msa0279090:CDS
CGCAAAAGATTATGGAATTT+GGG 0.266474 2_3:+12393250 Msa0279090:CDS
GGTAGCACAGCAGGGTTCTT+AGG 0.266911 2_3:+12392736 Msa0279090:CDS
GGAAAATAAGCAAAGTAATT+AGG 0.271671 2_3:-12392706 None:intergenic
TTAGTCTTAATGCTCATAAA+TGG 0.276313 2_3:+12393360 Msa0279090:CDS
ATTGTTGATAACAATGATTC+AGG 0.282223 2_3:-12393126 None:intergenic
TTGTTGTTGTCTTTGGTTAA+AGG 0.284413 2_3:+12393400 Msa0279090:CDS
TGAACGTTGTTGGATTTAAC+TGG 0.304439 2_3:+12392779 Msa0279090:CDS
TAGAAAATGTTGTTATAGAT+TGG 0.319360 2_3:+12392827 Msa0279090:CDS
CAGAGGAAATGCATGTGATT+AGG 0.320772 2_3:+12393969 Msa0279090:CDS
GTGCAAGTCGCAAAAGATTA+TGG 0.324331 2_3:+12393242 Msa0279090:CDS
TTGGATTCTATCAATGGTTC+AGG 0.342114 2_3:+12393875 Msa0279090:CDS
CCTGCTGTGCTACCACTTGA+TGG 0.350739 2_3:-12392727 None:intergenic
GAAGATGTTATTGTTGCTAA+TGG 0.351139 2_3:+12393779 Msa0279090:CDS
AGAGGAAATGCATGTGATTA+GGG 0.354844 2_3:+12393970 Msa0279090:CDS
TTGAATTCTGTAGTATCTAG+TGG 0.355450 2_3:-12392484 None:intergenic
TGAAATTAATCGTAAGTTGT+TGG 0.367956 2_3:+12393856 Msa0279090:CDS
GCTATGGTGTTGATAATCTT+AGG 0.377963 2_3:+12393576 Msa0279090:CDS
TTTAAGGAACCATGTTGAAA+TGG 0.378514 2_3:+12393604 Msa0279090:CDS
CCGAAGATTTCGCGCTTTGA+AGG 0.381530 2_3:+12393535 Msa0279090:CDS
CCTTCAAAGCGCGAAATCTT+CGG 0.384803 2_3:-12393535 None:intergenic
CCATCAAGTGGTAGCACAGC+AGG 0.386882 2_3:+12392727 Msa0279090:CDS
GAGTTTAGATATTTGATTGA+TGG 0.395614 2_3:+12393317 Msa0279090:CDS
AGGATGGTTTCAATAGGTTC+AGG 0.403995 2_3:-12392634 None:intergenic
AGCACTGGATTGAACGTTGT+TGG 0.408006 2_3:+12392769 Msa0279090:CDS
TCTTCAAGGATGGTTTCAAT+AGG 0.409255 2_3:-12392640 None:intergenic
AAGTTGTTGGATTCTATCAA+TGG 0.412524 2_3:+12393869 Msa0279090:CDS
TGGTTTGTTCTTAGAAGCTA+TGG 0.413847 2_3:+12393560 Msa0279090:CDS
GATTTCGCGCTTTGAAGGTA+TGG 0.415981 2_3:+12393540 Msa0279090:CDS
CATGTTGATGCTGCTTATGC+TGG 0.418283 2_3:+12393275 Msa0279090:CDS
CTTTGCCAATGTGTTATACC+TGG 0.443144 2_3:-12392682 None:intergenic
AAGTGGTTGATTACAAAGAT+TGG 0.455962 2_3:+12393498 Msa0279090:CDS
TTAGGAGAAATGTTAAGCAC+TGG 0.472185 2_3:+12392754 Msa0279090:CDS
AGTTTGGTTCTACTTGACTT+AGG 0.478980 2_3:-12392573 None:intergenic
ATGACTCATGCTGTGGTTGA+AGG 0.487228 2_3:+12393908 Msa0279090:CDS
GCTAATGGAAAGGTAACAAA+TGG 0.487672 2_3:+12393734 Msa0279090:CDS
AAATGCATGTGATTAGGGCT+TGG 0.493317 2_3:+12393975 Msa0279090:CDS
AGTTCCCAAAATACCTTCAC+AGG 0.500257 2_3:-12392923 None:intergenic
TGAATTCTGTAGTATCTAGT+GGG 0.505218 2_3:-12392483 None:intergenic
GGTTGGTGAAAATGGACAAA+AGG 0.505578 2_3:+12393642 Msa0279090:CDS
GGATTTGAAGGTGCAAAAGA+AGG 0.506622 2_3:-12392613 None:intergenic
TTTGTGATTAGGTGTGCTGT+TGG 0.510849 2_3:+12393935 Msa0279090:CDS
ACTTATCAGTCTTAATAGCC+CGG 0.511731 2_3:-12393083 None:intergenic
TCAATAGGTTCAGGATTTGA+AGG 0.516728 2_3:-12392625 None:intergenic
GGTTGATTACAAAGATTGGC+AGG 0.516909 2_3:+12393502 Msa0279090:CDS
GGTTCTACTTGACTTAGGAC+AGG 0.523508 2_3:-12392568 None:intergenic
TGCTTCTGATTCAAAACAAG+TGG 0.538782 2_3:+12393481 Msa0279090:CDS
GCTAATGGAAAGGTGACAAA+TGG 0.553773 2_3:+12393794 Msa0279090:CDS
TTATTAGGTACAACCTGTGA+AGG 0.556540 2_3:+12392910 Msa0279090:CDS
AATGTTGTTATAGATTGGCT+TGG 0.556855 2_3:+12392832 Msa0279090:CDS
TTTGCCAATGTGTTATACCT+GGG 0.567911 2_3:-12392681 None:intergenic
AAAATTGGTAGTGAAAATGT+AGG 0.570092 2_3:+12392976 Msa0279090:CDS
GCATGTGATTAGGGCTTGGA+AGG 0.593106 2_3:+12393979 Msa0279090:CDS
CATCAAGTGGTAGCACAGCA+GGG 0.607312 2_3:+12392728 Msa0279090:CDS
TCAATCAAATATCTAAACTC+AGG 0.607405 2_3:-12393314 None:intergenic
TGTTGGAGCAACTTTAACAG+AGG 0.627115 2_3:+12393952 Msa0279090:CDS
TGTTATTGTTGCTAATGGAA+AGG 0.631501 2_3:+12393784 Msa0279090:CDS
TAATCCCAGGTATAACACAT+TGG 0.657713 2_3:+12392677 Msa0279090:CDS
TGTGTACATGACTCATGCTG+TGG 0.661042 2_3:+12393901 Msa0279090:CDS
ACTACAGAATTCAAGAAACA+AGG 0.665050 2_3:+12392493 Msa0279090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAAATGATTTGAAAAA+TGG + chr2_3:12393147-12393166 Msa0279090:intron 15.0%
!!! ATAATCTTAGGAATTTTTTA+AGG + chr2_3:12393588-12393607 Msa0279090:CDS 15.0%
!! ATACAAAATGATTTGAAAAA+TGG + chr2_3:12393147-12393166 Msa0279090:intron 15.0%
!!! ATAATCTTAGGAATTTTTTA+AGG + chr2_3:12393588-12393607 Msa0279090:CDS 15.0%
!! TAGAAAATGTTGTTATAGAT+TGG + chr2_3:12392827-12392846 Msa0279090:CDS 20.0%
!! GATAAAATTCTTAGCAAAAT+TGG + chr2_3:12392961-12392980 Msa0279090:CDS 20.0%
!! AAATGATTTGAAAAATGGTT+TGG + chr2_3:12393152-12393171 Msa0279090:intron 20.0%
!! AAACACTTTATCAAAGAATT+TGG - chr2_3:12393428-12393447 None:intergenic 20.0%
!! TAGAAAATGTTGTTATAGAT+TGG + chr2_3:12392827-12392846 Msa0279090:CDS 20.0%
!! GATAAAATTCTTAGCAAAAT+TGG + chr2_3:12392961-12392980 Msa0279090:CDS 20.0%
!! AAATGATTTGAAAAATGGTT+TGG + chr2_3:12393152-12393171 Msa0279090:intron 20.0%
!! AAACACTTTATCAAAGAATT+TGG - chr2_3:12393428-12393447 None:intergenic 20.0%
!! TGTTTTCATAATAATCAGCT+AGG - chr2_3:12392537-12392556 None:intergenic 25.0%
!!! TTTTTGATAATCTTCAAGGA+TGG - chr2_3:12392653-12392672 None:intergenic 25.0%
!!! TGTGTTTTTGATAATCTTCA+AGG - chr2_3:12392657-12392676 None:intergenic 25.0%
! GGAAAATAAGCAAAGTAATT+AGG - chr2_3:12392709-12392728 None:intergenic 25.0%
!! CCTTTAAAAAGAAAACTCTT+AGG - chr2_3:12392874-12392893 None:intergenic 25.0%
!! CCTAAGAGTTTTCTTTTTAA+AGG + chr2_3:12392871-12392890 Msa0279090:CDS 25.0%
!!! AAGAGTTTTCTTTTTAAAGG+TGG + chr2_3:12392874-12392893 Msa0279090:CDS 25.0%
!!! AAAATTGGTAGTGAAAATGT+AGG + chr2_3:12392976-12392995 Msa0279090:CDS 25.0%
!!! ATTGTTGATAACAATGATTC+AGG - chr2_3:12393129-12393148 None:intergenic 25.0%
! TCAATCAAATATCTAAACTC+AGG - chr2_3:12393317-12393336 None:intergenic 25.0%
! GAGTTTAGATATTTGATTGA+TGG + chr2_3:12393317-12393336 Msa0279090:CDS 25.0%
!!! TTAGTCTTAATGCTCATAAA+TGG + chr2_3:12393360-12393379 Msa0279090:CDS 25.0%
!! ATTTAGATTGTTGTTGTCTT+TGG + chr2_3:12393393-12393412 Msa0279090:CDS 25.0%
!! AAATGGCTAAAACTTTTGAA+GGG + chr2_3:12393621-12393640 Msa0279090:CDS 25.0%
!!! AACTTTCTCTTGTTTGTTTT+AGG + chr2_3:12393687-12393706 Msa0279090:CDS 25.0%
!!! TGTTTTAGGATTTTACCATA+TGG + chr2_3:12393701-12393720 Msa0279090:CDS 25.0%
!!! TTAGCAACTTTTTTACCATA+TGG - chr2_3:12393719-12393738 None:intergenic 25.0%
! TATGGTAAAAAAGTTGCTAA+TGG + chr2_3:12393719-12393738 Msa0279090:CDS 25.0%
! TAAAAAAGTTGCTAATGGAA+AGG + chr2_3:12393724-12393743 Msa0279090:CDS 25.0%
! TGAAATTAATCGTAAGTTGT+TGG + chr2_3:12393856-12393875 Msa0279090:CDS 25.0%
!! TGTTTTCATAATAATCAGCT+AGG - chr2_3:12392537-12392556 None:intergenic 25.0%
!!! TTTTTGATAATCTTCAAGGA+TGG - chr2_3:12392653-12392672 None:intergenic 25.0%
!!! TGTGTTTTTGATAATCTTCA+AGG - chr2_3:12392657-12392676 None:intergenic 25.0%
! GGAAAATAAGCAAAGTAATT+AGG - chr2_3:12392709-12392728 None:intergenic 25.0%
!! CCTTTAAAAAGAAAACTCTT+AGG - chr2_3:12392874-12392893 None:intergenic 25.0%
!! CCTAAGAGTTTTCTTTTTAA+AGG + chr2_3:12392871-12392890 Msa0279090:CDS 25.0%
!!! AAGAGTTTTCTTTTTAAAGG+TGG + chr2_3:12392874-12392893 Msa0279090:CDS 25.0%
!!! AAAATTGGTAGTGAAAATGT+AGG + chr2_3:12392976-12392995 Msa0279090:CDS 25.0%
!!! ATTGTTGATAACAATGATTC+AGG - chr2_3:12393129-12393148 None:intergenic 25.0%
! TCAATCAAATATCTAAACTC+AGG - chr2_3:12393317-12393336 None:intergenic 25.0%
! GAGTTTAGATATTTGATTGA+TGG + chr2_3:12393317-12393336 Msa0279090:CDS 25.0%
!!! TTAGTCTTAATGCTCATAAA+TGG + chr2_3:12393360-12393379 Msa0279090:CDS 25.0%
!! ATTTAGATTGTTGTTGTCTT+TGG + chr2_3:12393393-12393412 Msa0279090:CDS 25.0%
!! AAATGGCTAAAACTTTTGAA+GGG + chr2_3:12393621-12393640 Msa0279090:CDS 25.0%
!!! AACTTTCTCTTGTTTGTTTT+AGG + chr2_3:12393687-12393706 Msa0279090:CDS 25.0%
!!! TGTTTTAGGATTTTACCATA+TGG + chr2_3:12393701-12393720 Msa0279090:CDS 25.0%
!!! TTAGCAACTTTTTTACCATA+TGG - chr2_3:12393719-12393738 None:intergenic 25.0%
! TATGGTAAAAAAGTTGCTAA+TGG + chr2_3:12393719-12393738 Msa0279090:CDS 25.0%
! TAAAAAAGTTGCTAATGGAA+AGG + chr2_3:12393724-12393743 Msa0279090:CDS 25.0%
! TGAAATTAATCGTAAGTTGT+TGG + chr2_3:12393856-12393875 Msa0279090:CDS 25.0%
TGAATTCTGTAGTATCTAGT+GGG - chr2_3:12392486-12392505 None:intergenic 30.0%
TTGAATTCTGTAGTATCTAG+TGG - chr2_3:12392487-12392506 None:intergenic 30.0%
ACTACAGAATTCAAGAAACA+AGG + chr2_3:12392493-12392512 Msa0279090:CDS 30.0%
!!! AACAGTTTTTTGAGGTAGTT+TGG - chr2_3:12392592-12392611 None:intergenic 30.0%
!!! AAGAAGGTAACAGTTTTTTG+AGG - chr2_3:12392600-12392619 None:intergenic 30.0%
TATCAAAAACACATAATCCC+AGG + chr2_3:12392664-12392683 Msa0279090:CDS 30.0%
!! TTTGCTTATTTTCCATCAAG+TGG + chr2_3:12392715-12392734 Msa0279090:CDS 30.0%
! AATGTTGTTATAGATTGGCT+TGG + chr2_3:12392832-12392851 Msa0279090:CDS 30.0%
!! AGTTTTCTTTTTAAAGGTGG+TGG + chr2_3:12392877-12392896 Msa0279090:CDS 30.0%
!! GTAGGTAAACTTGTTGTTTA+TGG + chr2_3:12392994-12393013 Msa0279090:CDS 30.0%
CAAAAAGCAGCTCATATAAT+AGG + chr2_3:12393042-12393061 Msa0279090:CDS 30.0%
! TTAATAGCCCGGAAATTTTT+CGG - chr2_3:12393075-12393094 None:intergenic 30.0%
TCGCAAAAGATTATGGAATT+TGG + chr2_3:12393249-12393268 Msa0279090:CDS 30.0%
CGCAAAAGATTATGGAATTT+GGG + chr2_3:12393250-12393269 Msa0279090:CDS 30.0%
! TTGTTGTTGTCTTTGGTTAA+AGG + chr2_3:12393400-12393419 Msa0279090:CDS 30.0%
AAGTGGTTGATTACAAAGAT+TGG + chr2_3:12393498-12393517 Msa0279090:CDS 30.0%
TTTAAGGAACCATGTTGAAA+TGG + chr2_3:12393604-12393623 Msa0279090:CDS 30.0%
!! AAGTTTTAGCCATTTCAACA+TGG - chr2_3:12393616-12393635 None:intergenic 30.0%
! GAAATGGCTAAAACTTTTGA+AGG + chr2_3:12393620-12393639 Msa0279090:CDS 30.0%
! CAAACAAGAGAAAGTTTTCT+AGG - chr2_3:12393683-12393702 None:intergenic 30.0%
GAAGATGTTATTGTTGCTAA+TGG + chr2_3:12393779-12393798 Msa0279090:CDS 30.0%
TGTTATTGTTGCTAATGGAA+AGG + chr2_3:12393784-12393803 Msa0279090:CDS 30.0%
AAGTTGTTGGATTCTATCAA+TGG + chr2_3:12393869-12393888 Msa0279090:CDS 30.0%
! TTGAAGGAGTTTTTGTGATT+AGG + chr2_3:12393924-12393943 Msa0279090:CDS 30.0%
TGAATTCTGTAGTATCTAGT+GGG - chr2_3:12392486-12392505 None:intergenic 30.0%
TTGAATTCTGTAGTATCTAG+TGG - chr2_3:12392487-12392506 None:intergenic 30.0%
ACTACAGAATTCAAGAAACA+AGG + chr2_3:12392493-12392512 Msa0279090:CDS 30.0%
!!! AACAGTTTTTTGAGGTAGTT+TGG - chr2_3:12392592-12392611 None:intergenic 30.0%
!!! AAGAAGGTAACAGTTTTTTG+AGG - chr2_3:12392600-12392619 None:intergenic 30.0%
TATCAAAAACACATAATCCC+AGG + chr2_3:12392664-12392683 Msa0279090:CDS 30.0%
!! TTTGCTTATTTTCCATCAAG+TGG + chr2_3:12392715-12392734 Msa0279090:CDS 30.0%
! AATGTTGTTATAGATTGGCT+TGG + chr2_3:12392832-12392851 Msa0279090:CDS 30.0%
!! AGTTTTCTTTTTAAAGGTGG+TGG + chr2_3:12392877-12392896 Msa0279090:CDS 30.0%
!! GTAGGTAAACTTGTTGTTTA+TGG + chr2_3:12392994-12393013 Msa0279090:CDS 30.0%
CAAAAAGCAGCTCATATAAT+AGG + chr2_3:12393042-12393061 Msa0279090:CDS 30.0%
! TTAATAGCCCGGAAATTTTT+CGG - chr2_3:12393075-12393094 None:intergenic 30.0%
TCGCAAAAGATTATGGAATT+TGG + chr2_3:12393249-12393268 Msa0279090:CDS 30.0%
CGCAAAAGATTATGGAATTT+GGG + chr2_3:12393250-12393269 Msa0279090:CDS 30.0%
! TTGTTGTTGTCTTTGGTTAA+AGG + chr2_3:12393400-12393419 Msa0279090:CDS 30.0%
AAGTGGTTGATTACAAAGAT+TGG + chr2_3:12393498-12393517 Msa0279090:CDS 30.0%
TTTAAGGAACCATGTTGAAA+TGG + chr2_3:12393604-12393623 Msa0279090:CDS 30.0%
!! AAGTTTTAGCCATTTCAACA+TGG - chr2_3:12393616-12393635 None:intergenic 30.0%
! GAAATGGCTAAAACTTTTGA+AGG + chr2_3:12393620-12393639 Msa0279090:CDS 30.0%
! CAAACAAGAGAAAGTTTTCT+AGG - chr2_3:12393683-12393702 None:intergenic 30.0%
GAAGATGTTATTGTTGCTAA+TGG + chr2_3:12393779-12393798 Msa0279090:CDS 30.0%
TGTTATTGTTGCTAATGGAA+AGG + chr2_3:12393784-12393803 Msa0279090:CDS 30.0%
AAGTTGTTGGATTCTATCAA+TGG + chr2_3:12393869-12393888 Msa0279090:CDS 30.0%
! TTGAAGGAGTTTTTGTGATT+AGG + chr2_3:12393924-12393943 Msa0279090:CDS 30.0%
!! AGTTTGGTTCTACTTGACTT+AGG - chr2_3:12392576-12392595 None:intergenic 35.0%
TCAATAGGTTCAGGATTTGA+AGG - chr2_3:12392628-12392647 None:intergenic 35.0%
TCTTCAAGGATGGTTTCAAT+AGG - chr2_3:12392643-12392662 None:intergenic 35.0%
TAATCCCAGGTATAACACAT+TGG + chr2_3:12392677-12392696 Msa0279090:CDS 35.0%
TTTGCCAATGTGTTATACCT+GGG - chr2_3:12392684-12392703 None:intergenic 35.0%
TTAGGAGAAATGTTAAGCAC+TGG + chr2_3:12392754-12392773 Msa0279090:CDS 35.0%
TGAACGTTGTTGGATTTAAC+TGG + chr2_3:12392779-12392798 Msa0279090:CDS 35.0%
!! TTTCTTTTTAAAGGTGGTGG+TGG + chr2_3:12392880-12392899 Msa0279090:CDS 35.0%
TTATTAGGTACAACCTGTGA+AGG + chr2_3:12392910-12392929 Msa0279090:CDS 35.0%
!!! TACAACCTGTGAAGGTATTT+TGG + chr2_3:12392918-12392937 Msa0279090:CDS 35.0%
!!! ACAACCTGTGAAGGTATTTT+GGG + chr2_3:12392919-12392938 Msa0279090:CDS 35.0%
GAATAGACCCGAAAAATTTC+CGG + chr2_3:12393064-12393083 Msa0279090:CDS 35.0%
AATAGACCCGAAAAATTTCC+GGG + chr2_3:12393065-12393084 Msa0279090:CDS 35.0%
! TAATAGCCCGGAAATTTTTC+GGG - chr2_3:12393074-12393093 None:intergenic 35.0%
ACTTATCAGTCTTAATAGCC+CGG - chr2_3:12393086-12393105 None:intergenic 35.0%
ACAGTTACACAAAGAAAGCA+AGG - chr2_3:12393180-12393199 None:intergenic 35.0%
TGCTTTCTTTGTGTAACTGT+TGG + chr2_3:12393180-12393199 Msa0279090:intron 35.0%
AACGACGAATTCTGAGTATT+TGG + chr2_3:12393451-12393470 Msa0279090:CDS 35.0%
TGCTTCTGATTCAAAACAAG+TGG + chr2_3:12393481-12393500 Msa0279090:CDS 35.0%
!! TGGTTTGTTCTTAGAAGCTA+TGG + chr2_3:12393560-12393579 Msa0279090:CDS 35.0%
!! GCTATGGTGTTGATAATCTT+AGG + chr2_3:12393576-12393595 Msa0279090:CDS 35.0%
!!! TTTTGAAGGGTTGGTGAAAA+TGG + chr2_3:12393634-12393653 Msa0279090:CDS 35.0%
GCTAATGGAAAGGTAACAAA+TGG + chr2_3:12393734-12393753 Msa0279090:CDS 35.0%
TTGGATTCTATCAATGGTTC+AGG + chr2_3:12393875-12393894 Msa0279090:CDS 35.0%
AGAGGAAATGCATGTGATTA+GGG + chr2_3:12393970-12393989 Msa0279090:CDS 35.0%
!! AGTTTGGTTCTACTTGACTT+AGG - chr2_3:12392576-12392595 None:intergenic 35.0%
TCAATAGGTTCAGGATTTGA+AGG - chr2_3:12392628-12392647 None:intergenic 35.0%
TCTTCAAGGATGGTTTCAAT+AGG - chr2_3:12392643-12392662 None:intergenic 35.0%
TAATCCCAGGTATAACACAT+TGG + chr2_3:12392677-12392696 Msa0279090:CDS 35.0%
TTTGCCAATGTGTTATACCT+GGG - chr2_3:12392684-12392703 None:intergenic 35.0%
TTAGGAGAAATGTTAAGCAC+TGG + chr2_3:12392754-12392773 Msa0279090:CDS 35.0%
TGAACGTTGTTGGATTTAAC+TGG + chr2_3:12392779-12392798 Msa0279090:CDS 35.0%
!! TTTCTTTTTAAAGGTGGTGG+TGG + chr2_3:12392880-12392899 Msa0279090:CDS 35.0%
TTATTAGGTACAACCTGTGA+AGG + chr2_3:12392910-12392929 Msa0279090:CDS 35.0%
!!! TACAACCTGTGAAGGTATTT+TGG + chr2_3:12392918-12392937 Msa0279090:CDS 35.0%
!!! ACAACCTGTGAAGGTATTTT+GGG + chr2_3:12392919-12392938 Msa0279090:CDS 35.0%
GAATAGACCCGAAAAATTTC+CGG + chr2_3:12393064-12393083 Msa0279090:CDS 35.0%
AATAGACCCGAAAAATTTCC+GGG + chr2_3:12393065-12393084 Msa0279090:CDS 35.0%
! TAATAGCCCGGAAATTTTTC+GGG - chr2_3:12393074-12393093 None:intergenic 35.0%
ACTTATCAGTCTTAATAGCC+CGG - chr2_3:12393086-12393105 None:intergenic 35.0%
ACAGTTACACAAAGAAAGCA+AGG - chr2_3:12393180-12393199 None:intergenic 35.0%
TGCTTTCTTTGTGTAACTGT+TGG + chr2_3:12393180-12393199 Msa0279090:intron 35.0%
AACGACGAATTCTGAGTATT+TGG + chr2_3:12393451-12393470 Msa0279090:CDS 35.0%
TGCTTCTGATTCAAAACAAG+TGG + chr2_3:12393481-12393500 Msa0279090:CDS 35.0%
!! TGGTTTGTTCTTAGAAGCTA+TGG + chr2_3:12393560-12393579 Msa0279090:CDS 35.0%
!! GCTATGGTGTTGATAATCTT+AGG + chr2_3:12393576-12393595 Msa0279090:CDS 35.0%
!!! TTTTGAAGGGTTGGTGAAAA+TGG + chr2_3:12393634-12393653 Msa0279090:CDS 35.0%
GCTAATGGAAAGGTAACAAA+TGG + chr2_3:12393734-12393753 Msa0279090:CDS 35.0%
TTGGATTCTATCAATGGTTC+AGG + chr2_3:12393875-12393894 Msa0279090:CDS 35.0%
AGAGGAAATGCATGTGATTA+GGG + chr2_3:12393970-12393989 Msa0279090:CDS 35.0%
! GGATTTGAAGGTGCAAAAGA+AGG - chr2_3:12392616-12392635 None:intergenic 40.0%
AGGATGGTTTCAATAGGTTC+AGG - chr2_3:12392637-12392656 None:intergenic 40.0%
CTTTGCCAATGTGTTATACC+TGG - chr2_3:12392685-12392704 None:intergenic 40.0%
!!! TTTTCTAGTTCTGTAGCAGC+TGG - chr2_3:12392814-12392833 None:intergenic 40.0%
AGTTCCCAAAATACCTTCAC+AGG - chr2_3:12392926-12392945 None:intergenic 40.0%
! TTTTCCTACCGGATCAATTG+CGG - chr2_3:12393220-12393239 None:intergenic 40.0%
! GACTTGCACAATTTTCCTAC+CGG - chr2_3:12393231-12393250 None:intergenic 40.0%
GTGCAAGTCGCAAAAGATTA+TGG + chr2_3:12393242-12393261 Msa0279090:CDS 40.0%
GGTTGATTACAAAGATTGGC+AGG + chr2_3:12393502-12393521 Msa0279090:CDS 40.0%
!! GGCTAAAACTTTTGAAGGGT+TGG + chr2_3:12393625-12393644 Msa0279090:CDS 40.0%
!! GGTTGGTGAAAATGGACAAA+AGG + chr2_3:12393642-12393661 Msa0279090:CDS 40.0%
GCTAATGGAAAGGTGACAAA+TGG + chr2_3:12393794-12393813 Msa0279090:CDS 40.0%
TTTGTGATTAGGTGTGCTGT+TGG + chr2_3:12393935-12393954 Msa0279090:CDS 40.0%
TGTTGGAGCAACTTTAACAG+AGG + chr2_3:12393952-12393971 Msa0279090:CDS 40.0%
CAGAGGAAATGCATGTGATT+AGG + chr2_3:12393969-12393988 Msa0279090:CDS 40.0%
AAATGCATGTGATTAGGGCT+TGG + chr2_3:12393975-12393994 Msa0279090:CDS 40.0%
! GGATTTGAAGGTGCAAAAGA+AGG - chr2_3:12392616-12392635 None:intergenic 40.0%
AGGATGGTTTCAATAGGTTC+AGG - chr2_3:12392637-12392656 None:intergenic 40.0%
CTTTGCCAATGTGTTATACC+TGG - chr2_3:12392685-12392704 None:intergenic 40.0%
!!! TTTTCTAGTTCTGTAGCAGC+TGG - chr2_3:12392814-12392833 None:intergenic 40.0%
AGTTCCCAAAATACCTTCAC+AGG - chr2_3:12392926-12392945 None:intergenic 40.0%
! TTTTCCTACCGGATCAATTG+CGG - chr2_3:12393220-12393239 None:intergenic 40.0%
! GACTTGCACAATTTTCCTAC+CGG - chr2_3:12393231-12393250 None:intergenic 40.0%
GTGCAAGTCGCAAAAGATTA+TGG + chr2_3:12393242-12393261 Msa0279090:CDS 40.0%
GGTTGATTACAAAGATTGGC+AGG + chr2_3:12393502-12393521 Msa0279090:CDS 40.0%
!! GGCTAAAACTTTTGAAGGGT+TGG + chr2_3:12393625-12393644 Msa0279090:CDS 40.0%
!! GGTTGGTGAAAATGGACAAA+AGG + chr2_3:12393642-12393661 Msa0279090:CDS 40.0%
GCTAATGGAAAGGTGACAAA+TGG + chr2_3:12393794-12393813 Msa0279090:CDS 40.0%
TTTGTGATTAGGTGTGCTGT+TGG + chr2_3:12393935-12393954 Msa0279090:CDS 40.0%
TGTTGGAGCAACTTTAACAG+AGG + chr2_3:12393952-12393971 Msa0279090:CDS 40.0%
CAGAGGAAATGCATGTGATT+AGG + chr2_3:12393969-12393988 Msa0279090:CDS 40.0%
AAATGCATGTGATTAGGGCT+TGG + chr2_3:12393975-12393994 Msa0279090:CDS 40.0%
GGTTCTACTTGACTTAGGAC+AGG - chr2_3:12392571-12392590 None:intergenic 45.0%
! AGCACTGGATTGAACGTTGT+TGG + chr2_3:12392769-12392788 Msa0279090:CDS 45.0%
!!! CTTTTTAAAGGTGGTGGTGG+CGG + chr2_3:12392883-12392902 Msa0279090:CDS 45.0%
TTCAACGACCGCAATTGATC+CGG + chr2_3:12393209-12393228 Msa0279090:intron 45.0%
! CATGTTGATGCTGCTTATGC+TGG + chr2_3:12393275-12393294 Msa0279090:CDS 45.0%
CCTTCAAAGCGCGAAATCTT+CGG - chr2_3:12393538-12393557 None:intergenic 45.0%
!! GATTTCGCGCTTTGAAGGTA+TGG + chr2_3:12393540-12393559 Msa0279090:CDS 45.0%
TGTGTACATGACTCATGCTG+TGG + chr2_3:12393901-12393920 Msa0279090:CDS 45.0%
ATGACTCATGCTGTGGTTGA+AGG + chr2_3:12393908-12393927 Msa0279090:CDS 45.0%
GGTTCTACTTGACTTAGGAC+AGG - chr2_3:12392571-12392590 None:intergenic 45.0%
! AGCACTGGATTGAACGTTGT+TGG + chr2_3:12392769-12392788 Msa0279090:CDS 45.0%
!!! CTTTTTAAAGGTGGTGGTGG+CGG + chr2_3:12392883-12392902 Msa0279090:CDS 45.0%
TTCAACGACCGCAATTGATC+CGG + chr2_3:12393209-12393228 Msa0279090:intron 45.0%
! CATGTTGATGCTGCTTATGC+TGG + chr2_3:12393275-12393294 Msa0279090:CDS 45.0%
CCTTCAAAGCGCGAAATCTT+CGG - chr2_3:12393538-12393557 None:intergenic 45.0%
!! GATTTCGCGCTTTGAAGGTA+TGG + chr2_3:12393540-12393559 Msa0279090:CDS 45.0%
TGTGTACATGACTCATGCTG+TGG + chr2_3:12393901-12393920 Msa0279090:CDS 45.0%
ATGACTCATGCTGTGGTTGA+AGG + chr2_3:12393908-12393927 Msa0279090:CDS 45.0%
CATCAAGTGGTAGCACAGCA+GGG + chr2_3:12392728-12392747 Msa0279090:CDS 50.0%
!!! GGTGGTGGCGGTGTTTTATT+AGG + chr2_3:12392895-12392914 Msa0279090:CDS 50.0%
CCGAAGATTTCGCGCTTTGA+AGG + chr2_3:12393535-12393554 Msa0279090:CDS 50.0%
GCATGTGATTAGGGCTTGGA+AGG + chr2_3:12393979-12393998 Msa0279090:CDS 50.0%
CATCAAGTGGTAGCACAGCA+GGG + chr2_3:12392728-12392747 Msa0279090:CDS 50.0%
!!! GGTGGTGGCGGTGTTTTATT+AGG + chr2_3:12392895-12392914 Msa0279090:CDS 50.0%
CCGAAGATTTCGCGCTTTGA+AGG + chr2_3:12393535-12393554 Msa0279090:CDS 50.0%
GCATGTGATTAGGGCTTGGA+AGG + chr2_3:12393979-12393998 Msa0279090:CDS 50.0%
CCTGCTGTGCTACCACTTGA+TGG - chr2_3:12392730-12392749 None:intergenic 55.0%
CCATCAAGTGGTAGCACAGC+AGG + chr2_3:12392727-12392746 Msa0279090:CDS 55.0%
GGTAGCACAGCAGGGTTCTT+AGG + chr2_3:12392736-12392755 Msa0279090:CDS 55.0%
ACGACCGCAATTGATCCGGT+AGG + chr2_3:12393213-12393232 Msa0279090:intron 55.0%
CCTGCTGTGCTACCACTTGA+TGG - chr2_3:12392730-12392749 None:intergenic 55.0%
CCATCAAGTGGTAGCACAGC+AGG + chr2_3:12392727-12392746 Msa0279090:CDS 55.0%
GGTAGCACAGCAGGGTTCTT+AGG + chr2_3:12392736-12392755 Msa0279090:CDS 55.0%
ACGACCGCAATTGATCCGGT+AGG + chr2_3:12393213-12393232 Msa0279090:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 12392478 12394060 12392478 ID=Msa0279090;Name=Msa0279090
chr2_3 mRNA 12392478 12394060 12392478 ID=Msa0279090-mRNA-1;Parent=Msa0279090;Name=Msa0279090-mRNA-1;_AED=0.15;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|494
chr2_3 exon 12392478 12393136 12392478 ID=Msa0279090-mRNA-1:exon:5510;Parent=Msa0279090-mRNA-1
chr2_3 exon 12393235 12394060 12393235 ID=Msa0279090-mRNA-1:exon:5511;Parent=Msa0279090-mRNA-1
chr2_3 CDS 12392478 12393136 12392478 ID=Msa0279090-mRNA-1:cds;Parent=Msa0279090-mRNA-1
chr2_3 CDS 12393235 12394060 12393235 ID=Msa0279090-mRNA-1:cds;Parent=Msa0279090-mRNA-1
Gene Sequence

>Msa0279090

ATGAACCCACTAGATACTACAGAATTCAAGAAACAAGGTCACATGATCATTGATTTCCTAGCTGATTATTATGAAAACATTTCAAACTATCCTGTCCTAAGTCAAGTAGAACCAAACTACCTCAAAAAACTGTTACCTTCTTTTGCACCTTCAAATCCTGAACCTATTGAAACCATCCTTGAAGATTATCAAAAACACATAATCCCAGGTATAACACATTGGCAAAGTCCTAATTACTTTGCTTATTTTCCATCAAGTGGTAGCACAGCAGGGTTCTTAGGAGAAATGTTAAGCACTGGATTGAACGTTGTTGGATTTAACTGGATTTCATCACCAGCTGCTACAGAACTAGAAAATGTTGTTATAGATTGGCTTGGTGAAATTTTGAATCTTCCTAAGAGTTTTCTTTTTAAAGGTGGTGGTGGCGGTGTTTTATTAGGTACAACCTGTGAAGGTATTTTGGGAACTCTAGTTGTTGCTAGAGATAAAATTCTTAGCAAAATTGGTAGTGAAAATGTAGGTAAACTTGTTGTTTATGGTTCTGATCAAACACATTGTGCAGTTCAAAAAGCAGCTCATATAATAGGAATAGACCCGAAAAATTTCCGGGCTATTAAGACTGATAAGTTAAATTCATTCACTTTGTTGCCTGAATCATTGAAAATTGTGCAAGTCGCAAAAGATTATGGAATTTGGGTTCATGTTGATGCTGCTTATGCTGGTAGTGCTTGTATTTGTCCTGAGTTTAGATATTTGATTGATGGTGTTGAAGATGCTGATTCTTTTAGTCTTAATGCTCATAAATGGTTTTTGACTAATTTAGATTGTTGTTGTCTTTGGTTAAAGGATCCAAATTCTTTGATAAAGTGTTTGTCAACGACGAATTCTGAGTATTTGGAGAATAGTGCTTCTGATTCAAAACAAGTGGTTGATTACAAAGATTGGCAGGTAACTTTAAGCCGAAGATTTCGCGCTTTGAAGGTATGGTTTGTTCTTAGAAGCTATGGTGTTGATAATCTTAGGAATTTTTTAAGGAACCATGTTGAAATGGCTAAAACTTTTGAAGGGTTGGTGAAAATGGACAAAAGGTTTGAAATTGTTGTACCTAGAAAACTTTCTCTTGTTTGTTTTAGGATTTTACCATATGGTAAAAAAGTTGCTAATGGAAAGGTAACAAATGGTGATGTTAAACTAATTAGTAATGAAGATGTTATTGTTGCTAATGGAAAGGTGACAAATGGAGAAGCTAAATTAATTAGTAGTGAAGATGTTATTGCTAATGAAATTAATCGTAAGTTGTTGGATTCTATCAATGGTTCAGGTGATGTGTACATGACTCATGCTGTGGTTGAAGGAGTTTTTGTGATTAGGTGTGCTGTTGGAGCAACTTTAACAGAGGAAATGCATGTGATTAGGGCTTGGAAGGTTGTACAAGAACATGCAGATGCTATTCTAAAAGATAAAAAGAGTTTCATATTTGTCTAG

Protein sequence

>Msa0279090

MNPLDTTEFKKQGHMIIDFLADYYENISNYPVLSQVEPNYLKKLLPSFAPSNPEPIETILEDYQKHIIPGITHWQSPNYFAYFPSSGSTAGFLGEMLSTGLNVVGFNWISSPAATELENVVIDWLGEILNLPKSFLFKGGGGGVLLGTTCEGILGTLVVARDKILSKIGSENVGKLVVYGSDQTHCAVQKAAHIIGIDPKNFRAIKTDKLNSFTLLPESLKIVQVAKDYGIWVHVDAAYAGSACICPEFRYLIDGVEDADSFSLNAHKWFLTNLDCCCLWLKDPNSLIKCLSTTNSEYLENSASDSKQVVDYKDWQVTLSRRFRALKVWFVLRSYGVDNLRNFLRNHVEMAKTFEGLVKMDKRFEIVVPRKLSLVCFRILPYGKKVANGKVTNGDVKLISNEDVIVANGKVTNGEAKLISSEDVIANEINRKLLDSINGSGDVYMTHAVVEGVFVIRCAVGATLTEEMHVIRAWKVVQEHADAILKDKKSFIFV*