AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800250 MtrunA17_Chr5g0405741 99.077 650 5 1 1 650 1 649 0.0 1328
Msa0800250 MtrunA17_Chr8g0335341 33.924 734 372 21 1 636 1 719 5.73e-105 334
Msa0800250 MtrunA17_Chr7g0250681 38.415 492 273 7 165 636 358 839 1.67e-96 315
Msa0800250 MtrunA17_Chr7g0250681 54.237 59 27 0 1 59 1 59 5.07e-12 69.3
Msa0800250 MtrunA17_Chr2g0331821 31.486 451 272 6 198 629 313 745 8.46e-57 205
Msa0800250 MtrunA17_Chr2g0331821 50.847 59 29 0 1 59 1 59 1.81e-12 70.5
Msa0800250 MtrunA17_Chr3g0139411 30.562 445 269 8 207 632 277 700 5.31e-54 196
Msa0800250 MtrunA17_Chr1g0211271 26.401 553 350 12 132 634 172 717 2.35e-52 192
Msa0800250 MtrunA17_Chr3g0124841 28.000 350 237 3 297 632 551 899 6.94e-45 172
Msa0800250 MtrunA17_Chr4g0004471 29.452 438 283 10 199 625 117 539 4.22e-40 154
Msa0800250 MtrunA17_Chr5g0448571 29.942 344 219 8 208 542 357 687 6.57e-38 150
Msa0800250 MtrunA17_Chr4g0072011 29.060 351 227 7 189 524 319 662 1.02e-35 143
Msa0800250 MtrunA17_Chr5g0440551 36.207 232 139 4 287 510 422 652 2.63e-33 136
Msa0800250 MtrunA17_Chr2g0298171 27.671 365 220 11 189 521 516 868 1.98e-32 134
Msa0800250 MtrunA17_Chr3g0118401 33.597 253 157 4 287 530 438 688 7.48e-32 132
Msa0800250 MtrunA17_Chr3g0143731 25.450 444 286 9 205 637 275 684 1.00e-29 125
Msa0800250 MtrunA17_Chr3g0130761 24.667 450 298 12 207 632 342 774 1.85e-27 118
Msa0800250 MtrunA17_Chr8g0382551 25.714 420 223 9 1 331 1 420 1.31e-20 95.1
Msa0800250 MtrunA17_Chr8g0382541 30.994 171 103 3 374 534 1 166 2.72e-20 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800250 AT3G51290.3 58.445 669 230 11 1 650 1 640 0.0 692
Msa0800250 AT3G51290.2 59.940 664 217 12 1 644 1 635 0.0 680
Msa0800250 AT3G51290.1 57.549 669 230 12 1 650 1 634 0.0 670
Msa0800250 AT1G02110.1 40.774 439 244 7 205 636 270 699 6.10e-97 313
Msa0800250 AT2G34670.2 32.514 692 389 14 1 632 1 674 6.11e-91 297
Msa0800250 AT3G60320.1 35.659 516 280 11 141 636 309 792 1.31e-84 282
Msa0800250 AT3G60320.1 39.706 136 71 3 1 125 1 136 7.01e-11 65.9
Msa0800250 AT2G34670.1 31.306 559 309 12 1 502 1 541 2.30e-63 220
Msa0800250 AT5G25590.1 30.973 452 264 8 206 632 330 758 1.18e-54 200
Msa0800250 AT1G52320.1 28.450 471 304 8 193 646 314 768 4.35e-51 189
Msa0800250 AT1G52320.2 27.719 469 310 6 193 646 337 791 7.79e-51 189
Msa0800250 AT1G52320.5 27.719 469 310 6 193 646 337 791 7.79e-51 189
Msa0800250 AT1G52320.3 28.884 457 292 8 207 646 25 465 2.33e-50 182
Msa0800250 AT1G52320.4 28.884 457 292 8 207 646 25 465 2.33e-50 182
Msa0800250 AT1G21740.1 27.826 460 307 9 194 632 486 941 1.63e-48 183
Msa0800250 AT4G39790.1 25.700 607 334 16 1 510 9 595 9.14e-45 170
Msa0800250 AT1G77500.1 27.928 444 284 7 204 632 448 870 1.77e-43 168
Msa0800250 AT4G35240.4 26.077 441 279 9 209 635 423 830 9.26e-39 154
Msa0800250 AT4G35240.3 26.077 441 279 9 209 635 423 830 9.26e-39 154
Msa0800250 AT4G35240.2 26.077 441 279 9 209 635 423 830 9.37e-39 154
Msa0800250 AT4G35240.1 26.077 441 279 9 209 635 423 830 9.37e-39 154
Msa0800250 AT2G27090.2 29.581 382 230 6 205 549 307 686 1.14e-35 144
Msa0800250 AT2G27090.1 29.581 382 230 6 205 549 307 686 1.14e-35 144
Msa0800250 AT2G17110.1 29.814 322 206 5 209 515 313 629 3.46e-35 142
Msa0800250 AT1G20530.1 29.917 361 215 7 204 551 230 565 8.80e-35 140
Msa0800250 AT4G30130.3 31.250 368 220 9 185 524 279 641 9.83e-33 135
Msa0800250 AT4G30130.1 31.250 368 220 9 185 524 279 641 9.83e-33 135
Msa0800250 AT2G19090.1 29.383 405 239 12 153 524 334 724 1.12e-31 132
Msa0800250 AT5G54480.1 25.373 335 230 4 298 632 401 715 4.47e-26 114
Msa0800250 AT4G30130.4 32.727 220 128 4 185 389 279 493 1.85e-15 80.1
Msa0800250 AT4G30130.2 32.727 220 128 4 185 389 279 493 1.85e-15 80.1

Find 228 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATCTGGTTGGGATTTC+TGG -0.014409 5_3:+13637158 Msa0800250:CDS
CAACTCATTGAGCTTGTTAA+AGG 0.192022 5_3:+13638721 Msa0800250:CDS
CCGCTGAAATCGTTAAATTA+AGG 0.198328 5_3:+13638680 Msa0800250:CDS
TAAGAGGGTTTCGGCTAAAT+TGG 0.237736 5_3:-13640383 None:intergenic
GGTGGTTCAGCTTAGATCTT+TGG 0.258572 5_3:+13640602 Msa0800250:CDS
GAGTCCATCAATGTGGGCTT+GGG 0.274226 5_3:+13637782 Msa0800250:CDS
AGATCTGGTTGAAGTTATTA+AGG 0.287678 5_3:+13637387 Msa0800250:CDS
CCTTCAGATGCTACTTTGTC+TGG 0.291223 5_3:-13640474 None:intergenic
CTGTTACAAGTTCCAAGTTC+TGG 0.295867 5_3:+13637463 Msa0800250:CDS
GGAGCACGGGGCGGCGGAGG+TGG 0.301210 5_3:-13637001 None:intergenic
TTCCGTGAAACGCGGTAGTA+TGG 0.301653 5_3:+13641274 Msa0800250:three_prime_UTR
TTCATCTGGTTGGGATTTCT+GGG 0.302684 5_3:+13637159 Msa0800250:CDS
TGGTGGTGCGGCGGCGAGTA+TGG 0.305131 5_3:+13637285 Msa0800250:CDS
AGTTCTTATACTTGGACTTC+TGG 0.309645 5_3:+13637070 Msa0800250:CDS
AGTCCTAAACTGAATGGATT+TGG 0.323942 5_3:+13637813 Msa0800250:CDS
CGGCATTGGCGACGGAGCAC+GGG 0.323976 5_3:-13637014 None:intergenic
TTGCCAAATCCATTCAGTTT+AGG 0.324852 5_3:-13637816 None:intergenic
GGTGGTGGCGGTGGAGGAGG+CGG 0.335791 5_3:-13637121 None:intergenic
GCGGCATTGGCGACGGAGCA+CGG 0.336776 5_3:-13637015 None:intergenic
AACTCCGGCGAGTGGGGTGG+TGG 0.337892 5_3:+13637309 Msa0800250:CDS
CTAGTTTGAGTTCTTATACT+TGG 0.340909 5_3:+13637062 Msa0800250:CDS
GGAAGAATGGGTTGTGGCTC+AGG 0.343501 5_3:-13636980 None:intergenic
GGAGGTGGTGGCGGTGGAGG+AGG 0.350539 5_3:-13637124 None:intergenic
GGCGGTGGAGGTGGTGGCGG+TGG 0.352376 5_3:-13637130 None:intergenic
ATGTCCGTGCCAATGCTTCA+TGG 0.353967 5_3:+13641115 Msa0800250:three_prime_UTR
GGTGGAGGTGGTGGCGGTGG+AGG 0.360162 5_3:-13637127 None:intergenic
ATTCGTTCTCTTCGTTCAAC+TGG 0.361840 5_3:+13636896 Msa0800250:CDS
TTGTTCTACTAAGAGGGTTT+CGG 0.362841 5_3:-13640392 None:intergenic
AGATCAGAAGTGAGTGAAGA+TGG 0.363884 5_3:-13636675 None:intergenic
GGTGGTGGTGGCGGCGGCAT+TGG 0.364079 5_3:-13637028 None:intergenic
GACATTGAATAACTTGCAAA+TGG 0.364382 5_3:+13640785 Msa0800250:CDS
GCCGGTGATTTCATCTGGTT+GGG 0.365383 5_3:+13637150 Msa0800250:CDS
TCTGAGGTGGTTGTGATGGC+TGG 0.368338 5_3:+13637265 Msa0800250:CDS
GACGGAGCACGGGGCGGCGG+AGG 0.372667 5_3:-13637004 None:intergenic
GAACCCCAAGCCCACATTGA+TGG 0.373780 5_3:-13637786 None:intergenic
GGTGGCGGTGGAGGAGGCGG+AGG 0.373798 5_3:-13637118 None:intergenic
AGATCTTTGGAGTGCAAGTA+TGG 0.374680 5_3:+13640615 Msa0800250:CDS
AGTAGGGTTGTAGGAGTATC+AGG 0.374874 5_3:-13641187 None:intergenic
CGCTGAAATCGTTAAATTAA+GGG 0.377951 5_3:+13638681 Msa0800250:CDS
CAAAGCCAAAGTTGCCGAAC+AGG 0.385210 5_3:+13640881 Msa0800250:CDS
GCATGAGAAGAAGGTAGAAT+TGG 0.386261 5_3:+13638543 Msa0800250:CDS
GGCGACGGAGCACGGGGCGG+CGG 0.387639 5_3:-13637007 None:intergenic
TGGGGTGGTGGGATACTCTA+AGG 0.390465 5_3:+13637321 Msa0800250:CDS
ATCCTTCTGCAACCTCTTCA+AGG 0.396106 5_3:+13640308 Msa0800250:CDS
TGAGTCCATCAATGTGGGCT+TGG 0.401240 5_3:+13637781 Msa0800250:CDS
CCACCGCCGGTGATTTCATC+TGG 0.401935 5_3:+13637145 Msa0800250:CDS
CGCCGGTGATTTCATCTGGT+TGG 0.405754 5_3:+13637149 Msa0800250:CDS
TCCTCAGTTGTTCTACTAAG+AGG 0.406306 5_3:-13640399 None:intergenic
ATCACCGGCGGTGGAGGTGG+TGG 0.408299 5_3:-13637136 None:intergenic
ACGCTCCTGTTCGGCAACTT+TGG 0.408625 5_3:-13640886 None:intergenic
GCTAATAATGGTGTTGGAAA+TGG 0.409299 5_3:+13637873 Msa0800250:CDS
GAAGTCAGAGTATGCGTTCA+AGG 0.414553 5_3:+13640566 Msa0800250:CDS
TCAGATGTAGGGTTATTTGA+TGG 0.416093 5_3:-13640231 None:intergenic
TTCAAGAAACAGTAAAGATC+TGG 0.421580 5_3:+13637372 Msa0800250:CDS
CCATTCACCTCCATTGCAGT+AGG 0.421855 5_3:-13641204 None:intergenic
AGCTACTCACCTTGACCTCT+TGG 0.422364 5_3:-13637947 None:intergenic
TATACTTGGACTTCTGGTAC+TGG 0.430143 5_3:+13637076 Msa0800250:CDS
GTAGGTAAAATGTACGGAAA+TGG 0.432180 5_3:+13637750 Msa0800250:intron
ATCGGAGGTGGTGGTGGCGG+CGG 0.436722 5_3:-13637034 None:intergenic
AACTCATTGAGCTTGTTAAA+GGG 0.437246 5_3:+13638722 Msa0800250:CDS
TATTTGATGGTATGGTATTG+AGG 0.437293 5_3:-13640218 None:intergenic
TCTTCAAGTCCTAAACTGAA+TGG 0.440329 5_3:+13637807 Msa0800250:CDS
TTTCTTAAAGCTGCTGATGC+TGG 0.441699 5_3:+13637424 Msa0800250:CDS
CTCATCGGAGGTGGTGGTGG+CGG 0.441856 5_3:-13637037 None:intergenic
GCCTATGAATTTCAGATGTA+GGG 0.442368 5_3:-13640242 None:intergenic
ACCCTACATCTGAAATTCAT+AGG 0.445628 5_3:+13640241 Msa0800250:CDS
GGACTCATCGGAGGTGGTGG+TGG 0.448295 5_3:-13637040 None:intergenic
TTTAGGGCTAATAATGGTGT+TGG 0.449008 5_3:+13637867 Msa0800250:CDS
TGTAGGGTTATTTGATGGTA+TGG 0.450510 5_3:-13640226 None:intergenic
TACTCCATGTCGGAACGATC+TGG 0.451657 5_3:+13640642 Msa0800250:CDS
ACCGGCGGTGGAGGTGGTGG+CGG 0.452405 5_3:-13637133 None:intergenic
GGCGGCGGAGGTGGAAGAAT+GGG 0.453324 5_3:-13636992 None:intergenic
TTCAGCGGATGTACTATCAA+TGG 0.454069 5_3:-13638665 None:intergenic
TGGCTCTGAGGTGGTTGTGA+TGG 0.455742 5_3:+13637261 Msa0800250:CDS
TGCCTATGAATTTCAGATGT+AGG 0.455749 5_3:-13640243 None:intergenic
GGGCGGCGGAGGTGGAAGAA+TGG 0.457397 5_3:-13636993 None:intergenic
CTCCATTGCAGTAGGGTTGT+AGG 0.457572 5_3:-13641196 None:intergenic
TCAAGTTTCATGATATTACT+AGG 0.458255 5_3:-13641162 None:intergenic
TCTACCGATCATAAGGCAAA+AGG 0.462092 5_3:-13640969 None:intergenic
AAGTGAGTGAAGATGGGTAG+TGG 0.463226 5_3:-13636668 None:intergenic
CAGAAGCTGTGAACTTTCCT+AGG 0.468264 5_3:+13641340 Msa0800250:three_prime_UTR
TGGTGGACATTGCTCTACTT+TGG 0.468275 5_3:+13637893 Msa0800250:CDS
GATCAGAAGTGAGTGAAGAT+GGG 0.471602 5_3:-13636674 None:intergenic
CTTCACATCACGCTCCTGTT+CGG 0.472977 5_3:-13640895 None:intergenic
ATTGCAATCTACCGATCATA+AGG 0.474198 5_3:-13640976 None:intergenic
GGTGGCGGCGGCATTGGCGA+CGG 0.474914 5_3:-13637022 None:intergenic
GAAGCACATAGTTCAGCAAC+TGG 0.477790 5_3:+13640191 Msa0800250:CDS
GAAATCACCGGCGGTGGAGG+TGG 0.480985 5_3:-13637139 None:intergenic
GACCGTGACGAAGGAGGTGG+TGG 0.484218 5_3:-13637202 None:intergenic
GTGGGATACTCTAAGGAGTC+AGG 0.486521 5_3:+13637328 Msa0800250:CDS
TTAGCTCGCTTCTCCACGAC+AGG 0.487341 5_3:-13640687 None:intergenic
TAACAAGCTCAATGAGTTGA+GGG 0.487699 5_3:-13638717 None:intergenic
TGAAGAGGTTGCAGAAGGAT+TGG 0.490204 5_3:-13640305 None:intergenic
AAAGATGGAGCATGAGAAGA+AGG 0.491152 5_3:+13638534 Msa0800250:CDS
GAAATTAGAATCACAAATGA+TGG 0.492400 5_3:+13638630 Msa0800250:CDS
TAAGGAAGTTAGAGATGAGA+AGG 0.492702 5_3:+13638566 Msa0800250:CDS
AGAAGAAGGTAGAATTGGTA+AGG 0.495311 5_3:+13638548 Msa0800250:CDS
TAGGCAATCAACACTTCAGC+TGG 0.495649 5_3:+13640260 Msa0800250:CDS
AGTGAGTGAAGATGGGTAGT+GGG 0.496895 5_3:-13636667 None:intergenic
CATTCACCTCCATTGCAGTA+GGG 0.498363 5_3:-13641203 None:intergenic
AGAGAAGATCAAGCATGAAA+AGG 0.498964 5_3:+13640740 Msa0800250:CDS
GGTCGGCGACGGAGGAAGAG+TGG 0.499206 5_3:+13637221 Msa0800250:CDS
GAATGCTAAAACAATAAAGA+TGG 0.499919 5_3:+13638519 Msa0800250:intron
TGTGAAGAGAATATTACCTT+AGG 0.501697 5_3:+13640911 Msa0800250:CDS
CAAGTATAAGAACTCAAACT+AGG 0.505251 5_3:-13637061 None:intergenic
AGTCCATCAATGTGGGCTTG+GGG 0.509308 5_3:+13637783 Msa0800250:CDS
TTCGTCACGGTCGGCGACGG+AGG 0.509366 5_3:+13637213 Msa0800250:CDS
GATGAAATCACCGGCGGTGG+AGG 0.510962 5_3:-13637142 None:intergenic
CCTCAGTTGTTCTACTAAGA+GGG 0.511516 5_3:-13640398 None:intergenic
GCAACCTCTTCAAGGCCCAC+AGG 0.513509 5_3:+13640316 Msa0800250:CDS
GTATGGCAACTCCGGCGAGT+GGG 0.516126 5_3:+13637302 Msa0800250:CDS
CTAGGACTCATCGGAGGTGG+TGG 0.522370 5_3:-13637043 None:intergenic
ACAATCTATCCATGAAGCAT+TGG 0.525949 5_3:-13641124 None:intergenic
GGTTGTGATGGCTGGTGGTG+CGG 0.526368 5_3:+13637273 Msa0800250:CDS
CCAGATGAAATCACCGGCGG+TGG 0.526486 5_3:-13637145 None:intergenic
ACTCAGTGAGGAATAACAAA+AGG 0.526995 5_3:-13641245 None:intergenic
CGTGACGAAGGAGGTGGTGG+AGG 0.529404 5_3:-13637199 None:intergenic
CGTGGAGAAGCGAGCTAAGG+TGG 0.529785 5_3:+13640692 Msa0800250:CDS
TCCTTCGTCACGGTCGGCGA+CGG 0.530141 5_3:+13637210 Msa0800250:CDS
GTTGTGGCTCAGGTGGAAGA+TGG 0.530578 5_3:-13636970 None:intergenic
AGAAAAGGCAAAGAAAGAAG+TGG 0.531914 5_3:+13638606 Msa0800250:CDS
AATCCCTCAGTGGTTGGCTA+AGG 0.534625 5_3:+13640349 Msa0800250:CDS
AGGAAGTGAACTTGCAATGG+TGG 0.536931 5_3:+13637348 Msa0800250:CDS
TATGGCAACTCCGGCGAGTG+GGG 0.538150 5_3:+13637303 Msa0800250:CDS
ACCGCCACCACCTCCACCGC+CGG 0.541730 5_3:+13637132 Msa0800250:CDS
GGCAACTCCGGCGAGTGGGG+TGG 0.545451 5_3:+13637306 Msa0800250:CDS
CTTTGGAGAGGCTATATGCA+TGG 0.547076 5_3:+13637910 Msa0800250:CDS
GTTCAAGGAGTTCGAGAAGA+AGG 0.549473 5_3:+13640581 Msa0800250:CDS
TATCCCACCACCCCACTCGC+CGG 0.555600 5_3:-13637313 None:intergenic
AGTATGGCAACTCCGGCGAG+TGG 0.559483 5_3:+13637301 Msa0800250:CDS
CCTACTGCAATGGAGGTGAA+TGG 0.559874 5_3:+13641204 Msa0800250:three_prime_UTR
ACATTGAATAACTTGCAAAT+GGG 0.560318 5_3:+13640786 Msa0800250:CDS
CTACCGATCATAAGGCAAAA+GGG 0.560655 5_3:-13640968 None:intergenic
TGATTATGTGAAGACAGAAA+AGG 0.563772 5_3:+13638591 Msa0800250:CDS
GTAAAATGTACGGAAATGGA+TGG 0.566408 5_3:+13637754 Msa0800250:CDS
GAACTCAAACTAGGACTCAT+CGG 0.567558 5_3:-13637052 None:intergenic
ATGAAGCATTGGCACGGACA+TGG 0.568673 5_3:-13641113 None:intergenic
GCCGACCGTGACGAAGGAGG+TGG 0.568937 5_3:-13637205 None:intergenic
GGTTTCGGCTAAATTGGTAA+AGG 0.569697 5_3:-13640377 None:intergenic
CTCCTACAACCCTACTGCAA+TGG 0.569858 5_3:+13641194 Msa0800250:three_prime_UTR
TTAACAAGCTCAATGAGTTG+AGG 0.570089 5_3:-13638718 None:intergenic
AAGGAAGTTAGAGATGAGAA+GGG 0.570552 5_3:+13638567 Msa0800250:CDS
AAAACTTGAATCTGAAACAT+GGG 0.570783 5_3:-13636486 None:intergenic
GAGGTGGTTGTGATGGCTGG+TGG 0.571563 5_3:+13637268 Msa0800250:CDS
TGCGATTGTAGTTCAACAGA+CGG 0.572167 5_3:+13640524 Msa0800250:CDS
TGTGGGTGTTGAGTCATTGT+CGG 0.573362 5_3:-13641022 None:intergenic
GGTAGATTGCAATGTAGCAC+TGG 0.574386 5_3:+13640986 Msa0800250:three_prime_UTR
AGAATGGGTTGTGGCTCAGG+TGG 0.576840 5_3:-13636977 None:intergenic
CTGTGAACTTTCCTAGGCGT+GGG 0.577027 5_3:+13641346 Msa0800250:three_prime_UTR
GGTGGAGGTTGCTGCATGAA+AGG 0.577342 5_3:-13637184 None:intergenic
TACTACCACTGGCTCTGAGG+TGG 0.577905 5_3:+13637252 Msa0800250:CDS
GGCCTTGAAGAGGTTGCAGA+AGG 0.580739 5_3:-13640310 None:intergenic
CTACAACCCTACTGCAATGG+AGG 0.581879 5_3:+13641197 Msa0800250:three_prime_UTR
GAAATTGTACCAAGAGGTCA+AGG 0.582633 5_3:+13637938 Msa0800250:CDS
CCTTAATTTAACGATTTCAG+CGG 0.583461 5_3:-13638680 None:intergenic
ATATTGAATCCCTCAGTGGT+TGG 0.583645 5_3:+13640343 Msa0800250:CDS
CTGTCTCAAGAGGTTTCTGT+TGG 0.584325 5_3:+13637840 Msa0800250:CDS
CTGGTATATGCTCAACGGCA+AGG 0.584813 5_3:-13640455 None:intergenic
GCTGTGAACTTTCCTAGGCG+TGG 0.585934 5_3:+13641345 Msa0800250:three_prime_UTR
AAAACGTTACATGAAACAGT+TGG 0.586207 5_3:+13636832 Msa0800250:CDS
GATCGTTCCGACATGGAGTA+CGG 0.586607 5_3:-13640639 None:intergenic
AAAAGGCAGTGAGTGTTACA+AGG 0.586835 5_3:+13640757 Msa0800250:CDS
AATAATGGTGTTGGAAATGG+TGG 0.587362 5_3:+13637876 Msa0800250:CDS
GTCGGCGACGGAGGAAGAGT+GGG 0.588130 5_3:+13637222 Msa0800250:CDS
TCCGTCGCCGACCGTGACGA+AGG 0.588310 5_3:-13637211 None:intergenic
GTGGCTCAGGTGGAAGATGG+TGG 0.588457 5_3:-13636967 None:intergenic
GGCATTGGCGACGGAGCACG+GGG 0.588617 5_3:-13637013 None:intergenic
GAGCCTTAGCCAACCACTGA+GGG 0.589727 5_3:-13640352 None:intergenic
GAATTTGAGTCCATCAATGT+GGG 0.590249 5_3:+13637776 Msa0800250:CDS
GAGAACGAATGTACATAACA+TGG 0.591811 5_3:-13636883 None:intergenic
ATTGGCGACGGAGCACGGGG+CGG 0.592956 5_3:-13637010 None:intergenic
AGTCCCTGTGGGCCTTGAAG+AGG 0.594322 5_3:-13640320 None:intergenic
AAACTAGGACTCATCGGAGG+TGG 0.594612 5_3:-13637046 None:intergenic
GACATTGCTCTACTTTGGAG+AGG 0.594696 5_3:+13637898 Msa0800250:CDS
GGCGGCGAGTATGGCAACTC+CGG 0.595451 5_3:+13637294 Msa0800250:CDS
ATTTGGCAAGCTGTCTCAAG+AGG 0.598339 5_3:+13637830 Msa0800250:CDS
TTTGGAGAGGCTATATGCAT+GGG 0.600762 5_3:+13637911 Msa0800250:CDS
TGTGATGGCTGGTGGTGCGG+CGG 0.601290 5_3:+13637276 Msa0800250:CDS
TCCCAACCAGATGAAATCAC+CGG 0.602342 5_3:-13637151 None:intergenic
CCAGACAAAGTAGCATCTGA+AGG 0.606651 5_3:+13640474 Msa0800250:CDS
CTCCACCACCTCCTTCGTCA+CGG 0.607674 5_3:+13637200 Msa0800250:CDS
ACCACCTCCTTCGTCACGGT+CGG 0.608123 5_3:+13637204 Msa0800250:CDS
ATGGTGGTAGGTAAAATGTA+CGG 0.609045 5_3:+13637744 Msa0800250:intron
TGTCGTGGAGAAGCGAGCTA+AGG 0.609115 5_3:+13640689 Msa0800250:CDS
TATTCACCCTCTGCGAACAA+TGG 0.609504 5_3:+13640430 Msa0800250:CDS
GTCAGGAAGTGAACTTGCAA+TGG 0.609741 5_3:+13637345 Msa0800250:CDS
TACTACTACCACTGGCTCTG+AGG 0.610685 5_3:+13637249 Msa0800250:CDS
TTTAATGTAAACTACATGTG+TGG 0.611852 5_3:-13641040 None:intergenic
ATGGGTAGTGGGTAGTGTAG+TGG 0.611908 5_3:-13636656 None:intergenic
GGTGGAAGCTTTCAGAGCAA+AGG 0.612220 5_3:+13640710 Msa0800250:CDS
TGGGAAGCTACTACTACCAC+TGG 0.612359 5_3:+13637241 Msa0800250:CDS
AGAACCAGATCGTTCCGACA+TGG 0.612832 5_3:-13640646 None:intergenic
GTCGCCGACCGTGACGAAGG+AGG 0.617094 5_3:-13637208 None:intergenic
AAGGTGCCATTGTTCGCAGA+GGG 0.617481 5_3:-13640436 None:intergenic
GCTGCAACGTTCCCACGCCT+AGG 0.621616 5_3:-13641357 None:intergenic
CACAACCACCTCAGAGCCAG+TGG 0.624285 5_3:-13637257 None:intergenic
CAAGGAGTTCGAGAAGAAGG+TGG 0.624953 5_3:+13640584 Msa0800250:CDS
CAACCTCTTCAAGGCCCACA+GGG 0.625842 5_3:+13640317 Msa0800250:CDS
GTCATACATTCCGTGAAACG+CGG 0.629113 5_3:+13641266 Msa0800250:three_prime_UTR
TTACCTTAGGAAAATTGACA+TGG 0.630359 5_3:+13640924 Msa0800250:exon
TTATTTCTAAATGCATGCAG+TGG 0.631776 5_3:+13641314 Msa0800250:three_prime_UTR
GAAAACTTGAATCTGAAACA+TGG 0.632532 5_3:-13636487 None:intergenic
TTGGCAGGTTGATGTGCATG+TGG 0.634595 5_3:+13640139 Msa0800250:intron
GGAGGTGGAAGAATGGGTTG+TGG 0.635584 5_3:-13636986 None:intergenic
TTAATGTAAACTACATGTGT+GGG 0.637311 5_3:-13641039 None:intergenic
GGATTCAATATAGTCCCTGT+GGG 0.637488 5_3:-13640331 None:intergenic
ATGGACACAACACTCACACA+TGG 0.638692 5_3:-13641094 None:intergenic
CAAGGTGCCATTGTTCGCAG+AGG 0.639669 5_3:-13640437 None:intergenic
CAACACTCACACATGGACAC+CGG 0.639706 5_3:-13641087 None:intergenic
AAGAACGAAGGACCCTGTCG+TGG 0.642509 5_3:+13640674 Msa0800250:CDS
GGGATTCAATATAGTCCCTG+TGG 0.644115 5_3:-13640332 None:intergenic
AAGATGGTGGTTAAGATGAG+TGG 0.644159 5_3:-13636954 None:intergenic
GGAATTTGAGTCCATCAATG+TGG 0.647299 5_3:+13637775 Msa0800250:CDS
TTTGTCTGGTATATGCTCAA+CGG 0.655425 5_3:-13640460 None:intergenic
TGGAGCTTGAAGTACAGCAA+TGG 0.657391 5_3:+13640280 Msa0800250:CDS
CCCTCTTAGTAGAACAACTG+AGG 0.665771 5_3:+13640398 Msa0800250:CDS
CTATCCATGAAGCATTGGCA+CGG 0.672447 5_3:-13641119 None:intergenic
AGAACGAATGTACATAACAT+GGG 0.672481 5_3:-13636882 None:intergenic
GGAGAAGAAATTGTACCAAG+AGG 0.672591 5_3:+13637932 Msa0800250:CDS
TGGTTCTGTGAGAAGAACGA+AGG 0.676496 5_3:+13640662 Msa0800250:CDS
GACTATATTGAATCCCTCAG+TGG 0.688023 5_3:+13640339 Msa0800250:CDS
TAGCTCGCTTCTCCACGACA+GGG 0.695149 5_3:-13640686 None:intergenic
TGAGCCTTAGCCAACCACTG+AGG 0.698511 5_3:-13640353 None:intergenic
ACGGAATGTATGACTCAGTG+AGG 0.698840 5_3:-13641257 None:intergenic
GTATGGTCCGTACTCCATGT+CGG 0.723585 5_3:+13640632 Msa0800250:CDS
CTCAAACTAGGACTCATCGG+AGG 0.735263 5_3:-13637049 None:intergenic
CAACCAGATGAAATCACCGG+CGG 0.739217 5_3:-13637148 None:intergenic
GATTGTAGTTCAACAGACGG+AGG 0.775056 5_3:+13640527 Msa0800250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATGGTTTTTTTTTTTA+TGG - chr5_3:13636717-13636736 None:intergenic 10.0%
!!! CATAGTATTTATTATTTTTT+TGG + chr5_3:13638824-13638843 Msa0800250:intron 10.0%
!! ATAAAATAACAAAACAAATT+TGG - chr5_3:13640079-13640098 None:intergenic 10.0%
!!! TTGATTTCTTTTTGTTTTAT+GGG - chr5_3:13636582-13636601 None:intergenic 15.0%
!! TAAAATTTCAAATCTCAAAT+AGG - chr5_3:13637564-13637583 None:intergenic 15.0%
!!! TATTTGAGATTTGAAATTTT+AGG + chr5_3:13637563-13637582 Msa0800250:intron 15.0%
!! CAAATTACAATAAACAAAAA+AGG - chr5_3:13637639-13637658 None:intergenic 15.0%
!!! TTTTTGTATTTGAATTTTGA+AGG + chr5_3:13637701-13637720 Msa0800250:intron 15.0%
!! AAAAGAAAAAAGAGAAATAA+AGG + chr5_3:13638224-13638243 Msa0800250:intron 15.0%
!! TAATGAATCTAATAACAAAA+AGG - chr5_3:13638436-13638455 None:intergenic 15.0%
!!! ATAAAAAATATTGTTTTCGT+AGG + chr5_3:13639868-13639887 Msa0800250:intron 15.0%
!! AAAAAACAAGAACTTTAACT+AGG - chr5_3:13636553-13636572 None:intergenic 20.0%
!!! GTTGATTTCTTTTTGTTTTA+TGG - chr5_3:13636583-13636602 None:intergenic 20.0%
!! TAGTTGAAGAAAAAGAAAAT+GGG + chr5_3:13636755-13636774 Msa0800250:exon 20.0%
!! AATTCTCAAATTAACAACTA+AGG - chr5_3:13638093-13638112 None:intergenic 20.0%
!!! AATTACTAATGATTTGGATT+TGG - chr5_3:13638148-13638167 None:intergenic 20.0%
!!! TAACTTCGATGATATTTTTT+TGG + chr5_3:13638486-13638505 Msa0800250:intron 20.0%
!!! TTTTTAACAAGGAAAAGTTA+AGG - chr5_3:13638969-13638988 None:intergenic 20.0%
!!! ACAAGATCATTTTTTTAACA+AGG - chr5_3:13638980-13638999 None:intergenic 20.0%
!! ATTATTGTGTAACAATAGAT+GGG + chr5_3:13639536-13639555 Msa0800250:intron 20.0%
!!! TATACTTTTTCCATTACTTT+GGG + chr5_3:13639625-13639644 Msa0800250:intron 20.0%
!!! TAATTTTAAATCTTTGACAC+AGG - chr5_3:13639728-13639747 None:intergenic 20.0%
!! AAGTGACAATAATTTAATTC+CGG - chr5_3:13639784-13639803 None:intergenic 20.0%
!!! TCTTGAACTTTGATTTTTGT+TGG - chr5_3:13636617-13636636 None:intergenic 25.0%
!! CAAAGAAAGCACAATAAAAA+TGG - chr5_3:13636732-13636751 None:intergenic 25.0%
! CTAGTTGAAGAAAAAGAAAA+TGG + chr5_3:13636754-13636773 Msa0800250:exon 25.0%
!! TACATGCATGTCATAAATTT+TGG + chr5_3:13637517-13637536 Msa0800250:intron 25.0%
!! TTTTTGTTGAGTGTTAATGA+AGG + chr5_3:13637603-13637622 Msa0800250:intron 25.0%
! TCACACAATTACTAATGATT+TGG - chr5_3:13638154-13638173 None:intergenic 25.0%
! TTATCAAATCAACCTTAGTT+TGG - chr5_3:13638396-13638415 None:intergenic 25.0%
! CGAAGTTAAGCAATTATTAA+TGG - chr5_3:13638474-13638493 None:intergenic 25.0%
!!! TTCGATGATATTTTTTTGGT+TGG + chr5_3:13638490-13638509 Msa0800250:intron 25.0%
! GAATGCTAAAACAATAAAGA+TGG + chr5_3:13638519-13638538 Msa0800250:intron 25.0%
! GAAATTAGAATCACAAATGA+TGG + chr5_3:13638630-13638649 Msa0800250:CDS 25.0%
!! AAAATGATCTTGTTAACTTG+CGG + chr5_3:13638987-13639006 Msa0800250:intron 25.0%
! TCGTTATTGTGTAATATGTT+AGG - chr5_3:13639013-13639032 None:intergenic 25.0%
!! TTTTATACTGTTACTATGCT+AGG - chr5_3:13639276-13639295 None:intergenic 25.0%
!! AACTACTTTATAGTTTTTGC+TGG + chr5_3:13639311-13639330 Msa0800250:intron 25.0%
! CATTATTGTGTAACAATAGA+TGG + chr5_3:13639535-13639554 Msa0800250:intron 25.0%
!!! CTATACTTTTTCCATTACTT+TGG + chr5_3:13639624-13639643 Msa0800250:intron 25.0%
! TAGAGACAATTTGAATAAAG+TGG + chr5_3:13639676-13639695 Msa0800250:intron 25.0%
!! AAATATTGTTTTCGTAGGAT+CGG + chr5_3:13639873-13639892 Msa0800250:intron 25.0%
!! ACAAAAAACACTGTTTTCTT+AGG + chr5_3:13639930-13639949 Msa0800250:intron 25.0%
! ACTATCAGTTTATACATCAA+TGG - chr5_3:13639980-13639999 None:intergenic 25.0%
!!! TCTTTATTTTCTCACTTTAG+AGG + chr5_3:13640051-13640070 Msa0800250:intron 25.0%
!! ACATTGAATAACTTGCAAAT+GGG + chr5_3:13640786-13640805 Msa0800250:CDS 25.0%
! TTAATGTAAACTACATGTGT+GGG - chr5_3:13641042-13641061 None:intergenic 25.0%
! TTTAATGTAAACTACATGTG+TGG - chr5_3:13641043-13641062 None:intergenic 25.0%
!! TCACATTTTCAAATGATTAC+CGG + chr5_3:13641068-13641087 Msa0800250:three_prime_UTR 25.0%
! TCAAGTTTCATGATATTACT+AGG - chr5_3:13641165-13641184 None:intergenic 25.0%
!!! TTCTTTTTGTTTTATGGGTG+TGG - chr5_3:13636577-13636596 None:intergenic 30.0%
AAAACGTTACATGAAACAGT+TGG + chr5_3:13636832-13636851 Msa0800250:CDS 30.0%
AGAACGAATGTACATAACAT+GGG - chr5_3:13636885-13636904 None:intergenic 30.0%
CAAGTATAAGAACTCAAACT+AGG - chr5_3:13637064-13637083 None:intergenic 30.0%
! CTAGTTTGAGTTCTTATACT+TGG + chr5_3:13637062-13637081 Msa0800250:CDS 30.0%
TTCAAGAAACAGTAAAGATC+TGG + chr5_3:13637372-13637391 Msa0800250:CDS 30.0%
AGATCTGGTTGAAGTTATTA+AGG + chr5_3:13637387-13637406 Msa0800250:CDS 30.0%
!! GTGTTGTTTAAGATTCAAGT+TGG + chr5_3:13637663-13637682 Msa0800250:intron 30.0%
TGTGATGTAATTGTACTTGA+TGG + chr5_3:13637725-13637744 Msa0800250:intron 30.0%
TTTCTACAAAATCCTACTTG+AGG + chr5_3:13638179-13638198 Msa0800250:intron 30.0%
TTCTACAAAATCCTACTTGA+GGG + chr5_3:13638180-13638199 Msa0800250:intron 30.0%
GAATTATATTACCCTCAAGT+AGG - chr5_3:13638194-13638213 None:intergenic 30.0%
AGAGAAATAAAGGTTGAAGA+AGG + chr5_3:13638234-13638253 Msa0800250:intron 30.0%
!! AAGAAGGTTTTGTCTTTTGT+GGG + chr5_3:13638250-13638269 Msa0800250:intron 30.0%
TGGAGACTTCAAAAAAATGA+GGG - chr5_3:13638376-13638395 None:intergenic 30.0%
TTGGAGACTTCAAAAAAATG+AGG - chr5_3:13638377-13638396 None:intergenic 30.0%
!!! TTTTTGAAGTCTCCAAACTA+AGG + chr5_3:13638381-13638400 Msa0800250:intron 30.0%
TGATTATGTGAAGACAGAAA+AGG + chr5_3:13638591-13638610 Msa0800250:CDS 30.0%
CCTTAATTTAACGATTTCAG+CGG - chr5_3:13638683-13638702 None:intergenic 30.0%
CGCTGAAATCGTTAAATTAA+GGG + chr5_3:13638681-13638700 Msa0800250:CDS 30.0%
!! AACTCATTGAGCTTGTTAAA+GGG + chr5_3:13638722-13638741 Msa0800250:CDS 30.0%
TTGTTCAAAAAACGAGATTC+TGG - chr5_3:13639420-13639439 None:intergenic 30.0%
ATCACCAAGAACAAGAAAAA+GGG - chr5_3:13639465-13639484 None:intergenic 30.0%
AATCACCAAGAACAAGAAAA+AGG - chr5_3:13639466-13639485 None:intergenic 30.0%
AAGTGCATTGGGAAAATATA+TGG - chr5_3:13639504-13639523 None:intergenic 30.0%
! TTTCCCAATGCACTTTTATA+TGG + chr5_3:13639509-13639528 Msa0800250:intron 30.0%
! CATCCATATAAAAGTGCATT+GGG - chr5_3:13639515-13639534 None:intergenic 30.0%
! GTAATGGAAAAAGTATAGCA+TGG - chr5_3:13639622-13639641 None:intergenic 30.0%
! CATTTTACTGAATGATTCTC+CGG + chr5_3:13639762-13639781 Msa0800250:intron 30.0%
! AAACACTGTTTTCTTAGGAT+CGG + chr5_3:13639935-13639954 Msa0800250:intron 30.0%
! TATTTGATGGTATGGTATTG+AGG - chr5_3:13640221-13640240 None:intergenic 30.0%
!! AGGAATAAAAAGCTTGTTGA+CGG + chr5_3:13640494-13640513 Msa0800250:CDS 30.0%
! GACATTGAATAACTTGCAAA+TGG + chr5_3:13640785-13640804 Msa0800250:CDS 30.0%
!!! AAGTTTTTCAAGGGATTGTA+GGG + chr5_3:13640817-13640836 Msa0800250:CDS 30.0%
TGTGAAGAGAATATTACCTT+AGG + chr5_3:13640911-13640930 Msa0800250:CDS 30.0%
TTACCTTAGGAAAATTGACA+TGG + chr5_3:13640924-13640943 Msa0800250:exon 30.0%
!! TTATTTCTAAATGCATGCAG+TGG + chr5_3:13641314-13641333 Msa0800250:three_prime_UTR 30.0%
! TAGTGTAGTTGTCTGTTTTG+TGG - chr5_3:13636515-13636534 None:intergenic 35.0%
!! CTTTGATTTTTGTTGGCAAG+TGG - chr5_3:13636610-13636629 None:intergenic 35.0%
GAGAACGAATGTACATAACA+TGG - chr5_3:13636886-13636905 None:intergenic 35.0%
AGTTCTTATACTTGGACTTC+TGG + chr5_3:13637070-13637089 Msa0800250:CDS 35.0%
TGATCAGAAAAACCAGAACT+TGG - chr5_3:13637478-13637497 None:intergenic 35.0%
GATGTAATTGTACTTGATGG+TGG + chr5_3:13637728-13637747 Msa0800250:intron 35.0%
!! TAATTGTACTTGATGGTGGT+AGG + chr5_3:13637732-13637751 Msa0800250:intron 35.0%
ATGGTGGTAGGTAAAATGTA+CGG + chr5_3:13637744-13637763 Msa0800250:intron 35.0%
GTAGGTAAAATGTACGGAAA+TGG + chr5_3:13637750-13637769 Msa0800250:intron 35.0%
GTAAAATGTACGGAAATGGA+TGG + chr5_3:13637754-13637773 Msa0800250:CDS 35.0%
GAATTTGAGTCCATCAATGT+GGG + chr5_3:13637776-13637795 Msa0800250:CDS 35.0%
TCTTCAAGTCCTAAACTGAA+TGG + chr5_3:13637807-13637826 Msa0800250:CDS 35.0%
! AGTCCTAAACTGAATGGATT+TGG + chr5_3:13637813-13637832 Msa0800250:CDS 35.0%
TTGCCAAATCCATTCAGTTT+AGG - chr5_3:13637819-13637838 None:intergenic 35.0%
!!! AGGTTTCTGTTGGTAGTTTT+AGG + chr5_3:13637850-13637869 Msa0800250:CDS 35.0%
!!! GGTTTCTGTTGGTAGTTTTA+GGG + chr5_3:13637851-13637870 Msa0800250:CDS 35.0%
!!! GGTAGTTTTAGGGCTAATAA+TGG + chr5_3:13637861-13637880 Msa0800250:CDS 35.0%
! TTTAGGGCTAATAATGGTGT+TGG + chr5_3:13637867-13637886 Msa0800250:CDS 35.0%
! GCTAATAATGGTGTTGGAAA+TGG + chr5_3:13637873-13637892 Msa0800250:CDS 35.0%
! AATAATGGTGTTGGAAATGG+TGG + chr5_3:13637876-13637895 Msa0800250:CDS 35.0%
AAATTGCACAGCAACCAAAT+CGG + chr5_3:13638057-13638076 Msa0800250:intron 35.0%
! AAGGTCGTTTAAAACCGATT+TGG - chr5_3:13638074-13638093 None:intergenic 35.0%
!! GAAGAAGGTTTTGTCTTTTG+TGG + chr5_3:13638249-13638268 Msa0800250:intron 35.0%
CATAGTTATCCACAGAATGT+TGG - chr5_3:13638321-13638340 None:intergenic 35.0%
CAACATTCTGTGGATAACTA+TGG + chr5_3:13638319-13638338 Msa0800250:intron 35.0%
AGAAGAAGGTAGAATTGGTA+AGG + chr5_3:13638548-13638567 Msa0800250:CDS 35.0%
TAAGGAAGTTAGAGATGAGA+AGG + chr5_3:13638566-13638585 Msa0800250:CDS 35.0%
AAGGAAGTTAGAGATGAGAA+GGG + chr5_3:13638567-13638586 Msa0800250:CDS 35.0%
AGAAAAGGCAAAGAAAGAAG+TGG + chr5_3:13638606-13638625 Msa0800250:CDS 35.0%
CCGCTGAAATCGTTAAATTA+AGG + chr5_3:13638680-13638699 Msa0800250:CDS 35.0%
! TAACAAGCTCAATGAGTTGA+GGG - chr5_3:13638720-13638739 None:intergenic 35.0%
TTAACAAGCTCAATGAGTTG+AGG - chr5_3:13638721-13638740 None:intergenic 35.0%
!! CAACTCATTGAGCTTGTTAA+AGG + chr5_3:13638721-13638740 Msa0800250:CDS 35.0%
! AGCATCTCAATAAGCGTTTT+TGG + chr5_3:13638896-13638915 Msa0800250:intron 35.0%
ACCGTCCAATCTCAAATTAA+CGG - chr5_3:13639074-13639093 None:intergenic 35.0%
AGAGAATCAAGTACTAGAAC+TGG + chr5_3:13639237-13639256 Msa0800250:intron 35.0%
!! GTCTGTTTCTCACTTGTTTT+TGG + chr5_3:13639344-13639363 Msa0800250:intron 35.0%
! GCATCCATATAAAAGTGCAT+TGG - chr5_3:13639516-13639535 None:intergenic 35.0%
TTGTGTAACAATAGATGGGA+TGG + chr5_3:13639540-13639559 Msa0800250:intron 35.0%
TGTGTAACAATAGATGGGAT+GGG + chr5_3:13639541-13639560 Msa0800250:intron 35.0%
CGATTAAGTTCCCAAAGTAA+TGG - chr5_3:13639638-13639657 None:intergenic 35.0%
AATAAAGTGGTACCTTGTTG+TGG + chr5_3:13639689-13639708 Msa0800250:intron 35.0%
CGGAGAATCATTCAGTAAAA+TGG - chr5_3:13639764-13639783 None:intergenic 35.0%
! TGTAGGGTTATTTGATGGTA+TGG - chr5_3:13640229-13640248 None:intergenic 35.0%
TCAGATGTAGGGTTATTTGA+TGG - chr5_3:13640234-13640253 None:intergenic 35.0%
! ACCCTACATCTGAAATTCAT+AGG + chr5_3:13640241-13640260 Msa0800250:CDS 35.0%
GCCTATGAATTTCAGATGTA+GGG - chr5_3:13640245-13640264 None:intergenic 35.0%
TGCCTATGAATTTCAGATGT+AGG - chr5_3:13640246-13640265 None:intergenic 35.0%
TTGTTCTACTAAGAGGGTTT+CGG - chr5_3:13640395-13640414 None:intergenic 35.0%
TTTGTCTGGTATATGCTCAA+CGG - chr5_3:13640463-13640482 None:intergenic 35.0%
AGAGAAGATCAAGCATGAAA+AGG + chr5_3:13640740-13640759 Msa0800250:CDS 35.0%
!! GTTGTCCTCAAGTTTTTCAA+GGG + chr5_3:13640808-13640827 Msa0800250:CDS 35.0%
ACAATCCCTTGAAAAACTTG+AGG - chr5_3:13640816-13640835 None:intergenic 35.0%
!!! CAAGTTTTTCAAGGGATTGT+AGG + chr5_3:13640816-13640835 Msa0800250:CDS 35.0%
! GATCCATGTCAATTTTCCTA+AGG - chr5_3:13640930-13640949 None:intergenic 35.0%
ATTGCAATCTACCGATCATA+AGG - chr5_3:13640979-13640998 None:intergenic 35.0%
ACAATCTATCCATGAAGCAT+TGG - chr5_3:13641127-13641146 None:intergenic 35.0%
ACTCAGTGAGGAATAACAAA+AGG - chr5_3:13641248-13641267 None:intergenic 35.0%
GATCAGAAGTGAGTGAAGAT+GGG - chr5_3:13636677-13636696 None:intergenic 40.0%
AGATCAGAAGTGAGTGAAGA+TGG - chr5_3:13636678-13636697 None:intergenic 40.0%
ATTCGTTCTCTTCGTTCAAC+TGG + chr5_3:13636896-13636915 Msa0800250:CDS 40.0%
! AAGATGGTGGTTAAGATGAG+TGG - chr5_3:13636957-13636976 None:intergenic 40.0%
GAACTCAAACTAGGACTCAT+CGG - chr5_3:13637055-13637074 None:intergenic 40.0%
TATACTTGGACTTCTGGTAC+TGG + chr5_3:13637076-13637095 Msa0800250:CDS 40.0%
TTTCATCTGGTTGGGATTTC+TGG + chr5_3:13637158-13637177 Msa0800250:CDS 40.0%
TTCATCTGGTTGGGATTTCT+GGG + chr5_3:13637159-13637178 Msa0800250:CDS 40.0%
TTTCTTAAAGCTGCTGATGC+TGG + chr5_3:13637424-13637443 Msa0800250:CDS 40.0%
CTGTTACAAGTTCCAAGTTC+TGG + chr5_3:13637463-13637482 Msa0800250:CDS 40.0%
GGAATTTGAGTCCATCAATG+TGG + chr5_3:13637775-13637794 Msa0800250:CDS 40.0%
TTTGGAGAGGCTATATGCAT+GGG + chr5_3:13637911-13637930 Msa0800250:CDS 40.0%
GGAGAAGAAATTGTACCAAG+AGG + chr5_3:13637932-13637951 Msa0800250:CDS 40.0%
GAAATTGTACCAAGAGGTCA+AGG + chr5_3:13637938-13637957 Msa0800250:CDS 40.0%
!!! GTGTGCTTTTTCAAGGCATA+GGG - chr5_3:13637985-13638004 None:intergenic 40.0%
!!! TGTGTGCTTTTTCAAGGCAT+AGG - chr5_3:13637986-13638005 None:intergenic 40.0%
!!! GTCGAATGTGTGCTTTTTCA+AGG - chr5_3:13637992-13638011 None:intergenic 40.0%
GCTGTTCGATCTCAGTTTAA+CGG - chr5_3:13638035-13638054 None:intergenic 40.0%
TTGTGGGCATAAACATGATG+TGG + chr5_3:13638266-13638285 Msa0800250:intron 40.0%
TGTGGGCATAAACATGATGT+GGG + chr5_3:13638267-13638286 Msa0800250:intron 40.0%
TCTATGCAACCAACATTCTG+TGG + chr5_3:13638309-13638328 Msa0800250:intron 40.0%
AAAGATGGAGCATGAGAAGA+AGG + chr5_3:13638534-13638553 Msa0800250:CDS 40.0%
GCATGAGAAGAAGGTAGAAT+TGG + chr5_3:13638543-13638562 Msa0800250:CDS 40.0%
TTCAGCGGATGTACTATCAA+TGG - chr5_3:13638668-13638687 None:intergenic 40.0%
! TTTGGAGCCTATCTTAACCT+TGG + chr5_3:13638914-13638933 Msa0800250:intron 40.0%
CCAATCACCAAGGTTAAGAT+AGG - chr5_3:13638924-13638943 None:intergenic 40.0%
! CCTATCTTAACCTTGGTGAT+TGG + chr5_3:13638921-13638940 Msa0800250:intron 40.0%
AAGGAAAAGTTAAGGCGAGA+TGG - chr5_3:13638961-13638980 None:intergenic 40.0%
! CTGACCCGTTAATTTGAGAT+TGG + chr5_3:13639066-13639085 Msa0800250:intron 40.0%
CCGTCCAATCTCAAATTAAC+GGG - chr5_3:13639073-13639092 None:intergenic 40.0%
! CCCGTTAATTTGAGATTGGA+CGG + chr5_3:13639070-13639089 Msa0800250:intron 40.0%
CATGCTTCAAGACAGATTCT+TGG - chr5_3:13639127-13639146 None:intergenic 40.0%
CAAGAATCTGTCTTGAAGCA+TGG + chr5_3:13639125-13639144 Msa0800250:intron 40.0%
!! AGCATGGACTGCATTTTGTT+TGG + chr5_3:13639141-13639160 Msa0800250:intron 40.0%
TTGTTTGGTTGTGATCCCTT+TGG + chr5_3:13639156-13639175 Msa0800250:intron 40.0%
AGACAAGCAATGACTCCAAA+GGG - chr5_3:13639174-13639193 None:intergenic 40.0%
TAGACAAGCAATGACTCCAA+AGG - chr5_3:13639175-13639194 None:intergenic 40.0%
! TTTGGAGTCATTGCTTGTCT+AGG + chr5_3:13639174-13639193 Msa0800250:intron 40.0%
TTGGAGTCATTGCTTGTCTA+GGG + chr5_3:13639175-13639194 Msa0800250:intron 40.0%
CCAAGAACAAGAAAAAGGGT+TGG - chr5_3:13639461-13639480 None:intergenic 40.0%
! CCAACCCTTTTTCTTGTTCT+TGG + chr5_3:13639458-13639477 Msa0800250:intron 40.0%
CAAATTACCTGTCCACAACA+AGG - chr5_3:13639704-13639723 None:intergenic 40.0%
TCATCCATGAATAATCCAGC+AGG - chr5_3:13639848-13639867 None:intergenic 40.0%
! GCATTTTGAGCTTCTTGTGT+TGG + chr5_3:13640120-13640139 Msa0800250:intron 40.0%
GGATTCAATATAGTCCCTGT+GGG - chr5_3:13640334-13640353 None:intergenic 40.0%
GACTATATTGAATCCCTCAG+TGG + chr5_3:13640339-13640358 Msa0800250:CDS 40.0%
ATATTGAATCCCTCAGTGGT+TGG + chr5_3:13640343-13640362 Msa0800250:CDS 40.0%
GGTTTCGGCTAAATTGGTAA+AGG - chr5_3:13640380-13640399 None:intergenic 40.0%
TAAGAGGGTTTCGGCTAAAT+TGG - chr5_3:13640386-13640405 None:intergenic 40.0%
CCTCAGTTGTTCTACTAAGA+GGG - chr5_3:13640401-13640420 None:intergenic 40.0%
TCCTCAGTTGTTCTACTAAG+AGG - chr5_3:13640402-13640421 None:intergenic 40.0%
TGCGATTGTAGTTCAACAGA+CGG + chr5_3:13640524-13640543 Msa0800250:CDS 40.0%
!! AGATCTTTGGAGTGCAAGTA+TGG + chr5_3:13640615-13640634 Msa0800250:CDS 40.0%
AAAAGGCAGTGAGTGTTACA+AGG + chr5_3:13640757-13640776 Msa0800250:CDS 40.0%
! GGTTGTCCTCAAGTTTTTCA+AGG + chr5_3:13640807-13640826 Msa0800250:CDS 40.0%
! TCACCCTTTTGCCTTATGAT+CGG + chr5_3:13640965-13640984 Msa0800250:three_prime_UTR 40.0%
CTACCGATCATAAGGCAAAA+GGG - chr5_3:13640971-13640990 None:intergenic 40.0%
TCTACCGATCATAAGGCAAA+AGG - chr5_3:13640972-13640991 None:intergenic 40.0%
AGTGAGTGAAGATGGGTAGT+GGG - chr5_3:13636670-13636689 None:intergenic 45.0%
AAGTGAGTGAAGATGGGTAG+TGG - chr5_3:13636671-13636690 None:intergenic 45.0%
TCCCAACCAGATGAAATCAC+CGG - chr5_3:13637154-13637173 None:intergenic 45.0%
GTCAGGAAGTGAACTTGCAA+TGG + chr5_3:13637345-13637364 Msa0800250:CDS 45.0%
AGGAAGTGAACTTGCAATGG+TGG + chr5_3:13637348-13637367 Msa0800250:CDS 45.0%
ATTTGGCAAGCTGTCTCAAG+AGG + chr5_3:13637830-13637849 Msa0800250:CDS 45.0%
CTGTCTCAAGAGGTTTCTGT+TGG + chr5_3:13637840-13637859 Msa0800250:CDS 45.0%
! TGGTGGACATTGCTCTACTT+TGG + chr5_3:13637893-13637912 Msa0800250:CDS 45.0%
! GACATTGCTCTACTTTGGAG+AGG + chr5_3:13637898-13637917 Msa0800250:CDS 45.0%
! CTTTGGAGAGGCTATATGCA+TGG + chr5_3:13637910-13637929 Msa0800250:CDS 45.0%
CATTCGACGAAAAGCAATCC+CGG + chr5_3:13638004-13638023 Msa0800250:intron 45.0%
TTCGATCTCAGTTTAACGGC+CGG - chr5_3:13638031-13638050 None:intergenic 45.0%
ACATGATGTGGGTCTAGTGA+AGG + chr5_3:13638278-13638297 Msa0800250:intron 45.0%
TGGAGTCATTGCTTGTCTAG+GGG + chr5_3:13639176-13639195 Msa0800250:intron 45.0%
GTTACGAGGTTCATGCATGA+TGG + chr5_3:13639566-13639585 Msa0800250:intron 45.0%
TCTGCCTGCTGGATTATTCA+TGG + chr5_3:13639841-13639860 Msa0800250:intron 45.0%
! TTTGAGCTTCTTGTGTTGGC+AGG + chr5_3:13640124-13640143 Msa0800250:intron 45.0%
GAAGCACATAGTTCAGCAAC+TGG + chr5_3:13640191-13640210 Msa0800250:CDS 45.0%
TAGGCAATCAACACTTCAGC+TGG + chr5_3:13640260-13640279 Msa0800250:CDS 45.0%
TGGAGCTTGAAGTACAGCAA+TGG + chr5_3:13640280-13640299 Msa0800250:CDS 45.0%
TGAAGAGGTTGCAGAAGGAT+TGG - chr5_3:13640308-13640327 None:intergenic 45.0%
ATCCTTCTGCAACCTCTTCA+AGG + chr5_3:13640308-13640327 Msa0800250:CDS 45.0%
GGGATTCAATATAGTCCCTG+TGG - chr5_3:13640335-13640354 None:intergenic 45.0%
CCCTCTTAGTAGAACAACTG+AGG + chr5_3:13640398-13640417 Msa0800250:CDS 45.0%
TATTCACCCTCTGCGAACAA+TGG + chr5_3:13640430-13640449 Msa0800250:CDS 45.0%
!! CCTTCAGATGCTACTTTGTC+TGG - chr5_3:13640477-13640496 None:intergenic 45.0%
CCAGACAAAGTAGCATCTGA+AGG + chr5_3:13640474-13640493 Msa0800250:CDS 45.0%
GATTGTAGTTCAACAGACGG+AGG + chr5_3:13640527-13640546 Msa0800250:CDS 45.0%
GAAGTCAGAGTATGCGTTCA+AGG + chr5_3:13640566-13640585 Msa0800250:CDS 45.0%
GTTCAAGGAGTTCGAGAAGA+AGG + chr5_3:13640581-13640600 Msa0800250:CDS 45.0%
GGTGGTTCAGCTTAGATCTT+TGG + chr5_3:13640602-13640621 Msa0800250:CDS 45.0%
! TGGTTCTGTGAGAAGAACGA+AGG + chr5_3:13640662-13640681 Msa0800250:CDS 45.0%
!!! AGGGTTTTCAAGTGTGTGCA+TGG + chr5_3:13640836-13640855 Msa0800250:CDS 45.0%
!!! GTTTTCAAGTGTGTGCATGG+AGG + chr5_3:13640839-13640858 Msa0800250:CDS 45.0%
GGTAGATTGCAATGTAGCAC+TGG + chr5_3:13640986-13641005 Msa0800250:three_prime_UTR 45.0%
!! TGTGGGTGTTGAGTCATTGT+CGG - chr5_3:13641025-13641044 None:intergenic 45.0%
ATGGACACAACACTCACACA+TGG - chr5_3:13641097-13641116 None:intergenic 45.0%
!! CTATCCATGAAGCATTGGCA+CGG - chr5_3:13641122-13641141 None:intergenic 45.0%
!! AGTAGGGTTGTAGGAGTATC+AGG - chr5_3:13641190-13641209 None:intergenic 45.0%
CATTCACCTCCATTGCAGTA+GGG - chr5_3:13641206-13641225 None:intergenic 45.0%
ACGGAATGTATGACTCAGTG+AGG - chr5_3:13641260-13641279 None:intergenic 45.0%
GTCATACATTCCGTGAAACG+CGG + chr5_3:13641266-13641285 Msa0800250:three_prime_UTR 45.0%
CAGAAGCTGTGAACTTTCCT+AGG + chr5_3:13641340-13641359 Msa0800250:three_prime_UTR 45.0%
!! ATGGGTAGTGGGTAGTGTAG+TGG - chr5_3:13636659-13636678 None:intergenic 50.0%
AAACTAGGACTCATCGGAGG+TGG - chr5_3:13637049-13637068 None:intergenic 50.0%
CTCAAACTAGGACTCATCGG+AGG - chr5_3:13637052-13637071 None:intergenic 50.0%
CAACCAGATGAAATCACCGG+CGG - chr5_3:13637151-13637170 None:intergenic 50.0%
GCCGGTGATTTCATCTGGTT+GGG + chr5_3:13637150-13637169 Msa0800250:CDS 50.0%
TGGGAAGCTACTACTACCAC+TGG + chr5_3:13637241-13637260 Msa0800250:CDS 50.0%
!! TACTACTACCACTGGCTCTG+AGG + chr5_3:13637249-13637268 Msa0800250:CDS 50.0%
! GTGGGATACTCTAAGGAGTC+AGG + chr5_3:13637328-13637347 Msa0800250:CDS 50.0%
TGAGTCCATCAATGTGGGCT+TGG + chr5_3:13637781-13637800 Msa0800250:CDS 50.0%
GAGTCCATCAATGTGGGCTT+GGG + chr5_3:13637782-13637801 Msa0800250:CDS 50.0%
AGTCCATCAATGTGGGCTTG+GGG + chr5_3:13637783-13637802 Msa0800250:CDS 50.0%
AGCTACTCACCTTGACCTCT+TGG - chr5_3:13637950-13637969 None:intergenic 50.0%
TCGATCTCAGTTTAACGGCC+GGG - chr5_3:13638030-13638049 None:intergenic 50.0%
AGTTAAGGCGAGATGGCTCT+CGG - chr5_3:13638954-13638973 None:intergenic 50.0%
TCATTGCTTGTCTAGGGGAG+TGG + chr5_3:13639181-13639200 Msa0800250:intron 50.0%
AGATGGGATGGGATGTTACG+AGG + chr5_3:13639552-13639571 Msa0800250:intron 50.0%
! AGTGGTACCTTGTTGTGGAC+AGG + chr5_3:13639694-13639713 Msa0800250:intron 50.0%
CTAGCACAATTTCTGCCTGC+TGG + chr5_3:13639830-13639849 Msa0800250:intron 50.0%
!! TTGGCAGGTTGATGTGCATG+TGG + chr5_3:13640139-13640158 Msa0800250:intron 50.0%
! AATCCCTCAGTGGTTGGCTA+AGG + chr5_3:13640349-13640368 Msa0800250:CDS 50.0%
!! AAGGTGCCATTGTTCGCAGA+GGG - chr5_3:13640439-13640458 None:intergenic 50.0%
CTGGTATATGCTCAACGGCA+AGG - chr5_3:13640458-13640477 None:intergenic 50.0%
CAAGGAGTTCGAGAAGAAGG+TGG + chr5_3:13640584-13640603 Msa0800250:CDS 50.0%
GTATGGTCCGTACTCCATGT+CGG + chr5_3:13640632-13640651 Msa0800250:CDS 50.0%
GATCGTTCCGACATGGAGTA+CGG - chr5_3:13640642-13640661 None:intergenic 50.0%
TACTCCATGTCGGAACGATC+TGG + chr5_3:13640642-13640661 Msa0800250:CDS 50.0%
AGAACCAGATCGTTCCGACA+TGG - chr5_3:13640649-13640668 None:intergenic 50.0%
GGTGGAAGCTTTCAGAGCAA+AGG + chr5_3:13640710-13640729 Msa0800250:CDS 50.0%
CAAAGCCAAAGTTGCCGAAC+AGG + chr5_3:13640881-13640900 Msa0800250:CDS 50.0%
CTTCACATCACGCTCCTGTT+CGG - chr5_3:13640898-13640917 None:intergenic 50.0%
CAACACTCACACATGGACAC+CGG - chr5_3:13641090-13641109 None:intergenic 50.0%
!! ATGAAGCATTGGCACGGACA+TGG - chr5_3:13641116-13641135 None:intergenic 50.0%
ATGTCCGTGCCAATGCTTCA+TGG + chr5_3:13641115-13641134 Msa0800250:three_prime_UTR 50.0%
CTCCTACAACCCTACTGCAA+TGG + chr5_3:13641194-13641213 Msa0800250:three_prime_UTR 50.0%
CTCCATTGCAGTAGGGTTGT+AGG - chr5_3:13641199-13641218 None:intergenic 50.0%
CTACAACCCTACTGCAATGG+AGG + chr5_3:13641197-13641216 Msa0800250:three_prime_UTR 50.0%
CCATTCACCTCCATTGCAGT+AGG - chr5_3:13641207-13641226 None:intergenic 50.0%
CCTACTGCAATGGAGGTGAA+TGG + chr5_3:13641204-13641223 Msa0800250:three_prime_UTR 50.0%
TTCCGTGAAACGCGGTAGTA+TGG + chr5_3:13641274-13641293 Msa0800250:three_prime_UTR 50.0%
AGCCATACTACCGCGTTTCA+CGG - chr5_3:13641279-13641298 None:intergenic 50.0%
CTGTGAACTTTCCTAGGCGT+GGG + chr5_3:13641346-13641365 Msa0800250:three_prime_UTR 50.0%
GTTGTGGCTCAGGTGGAAGA+TGG - chr5_3:13636973-13636992 None:intergenic 55.0%
!! AGAATGGGTTGTGGCTCAGG+TGG - chr5_3:13636980-13636999 None:intergenic 55.0%
!! GGAAGAATGGGTTGTGGCTC+AGG - chr5_3:13636983-13637002 None:intergenic 55.0%
!! GGAGGTGGAAGAATGGGTTG+TGG - chr5_3:13636989-13637008 None:intergenic 55.0%
CGCCGGTGATTTCATCTGGT+TGG + chr5_3:13637149-13637168 Msa0800250:CDS 55.0%
GGTGGAGGTTGCTGCATGAA+AGG - chr5_3:13637187-13637206 None:intergenic 55.0%
!! TACTACCACTGGCTCTGAGG+TGG + chr5_3:13637252-13637271 Msa0800250:CDS 55.0%
!! TGGCTCTGAGGTGGTTGTGA+TGG + chr5_3:13637261-13637280 Msa0800250:CDS 55.0%
! TCTGAGGTGGTTGTGATGGC+TGG + chr5_3:13637265-13637284 Msa0800250:CDS 55.0%
!! TGGGGTGGTGGGATACTCTA+AGG + chr5_3:13637321-13637340 Msa0800250:CDS 55.0%
GAACCCCAAGCCCACATTGA+TGG - chr5_3:13637789-13637808 None:intergenic 55.0%
GGCCTTGAAGAGGTTGCAGA+AGG - chr5_3:13640313-13640332 None:intergenic 55.0%
CAACCTCTTCAAGGCCCACA+GGG + chr5_3:13640317-13640336 Msa0800250:CDS 55.0%
GAGCCTTAGCCAACCACTGA+GGG - chr5_3:13640355-13640374 None:intergenic 55.0%
TGAGCCTTAGCCAACCACTG+AGG - chr5_3:13640356-13640375 None:intergenic 55.0%
!! CAAGGTGCCATTGTTCGCAG+AGG - chr5_3:13640440-13640459 None:intergenic 55.0%
AAGAACGAAGGACCCTGTCG+TGG + chr5_3:13640674-13640693 Msa0800250:CDS 55.0%
TAGCTCGCTTCTCCACGACA+GGG - chr5_3:13640689-13640708 None:intergenic 55.0%
TTAGCTCGCTTCTCCACGAC+AGG - chr5_3:13640690-13640709 None:intergenic 55.0%
TGTCGTGGAGAAGCGAGCTA+AGG + chr5_3:13640689-13640708 Msa0800250:CDS 55.0%
ACGCTCCTGTTCGGCAACTT+TGG - chr5_3:13640889-13640908 None:intergenic 55.0%
GCTGTGAACTTTCCTAGGCG+TGG + chr5_3:13641345-13641364 Msa0800250:three_prime_UTR 55.0%
GTGGCTCAGGTGGAAGATGG+TGG - chr5_3:13636970-13636989 None:intergenic 60.0%
CTAGGACTCATCGGAGGTGG+TGG - chr5_3:13637046-13637065 None:intergenic 60.0%
GATGAAATCACCGGCGGTGG+AGG - chr5_3:13637145-13637164 None:intergenic 60.0%
CCAGATGAAATCACCGGCGG+TGG - chr5_3:13637148-13637167 None:intergenic 60.0%
CCACCGCCGGTGATTTCATC+TGG + chr5_3:13637145-13637164 Msa0800250:CDS 60.0%
CTCCACCACCTCCTTCGTCA+CGG + chr5_3:13637200-13637219 Msa0800250:CDS 60.0%
ACCACCTCCTTCGTCACGGT+CGG + chr5_3:13637204-13637223 Msa0800250:CDS 60.0%
CACAACCACCTCAGAGCCAG+TGG - chr5_3:13637260-13637279 None:intergenic 60.0%
GAGGTGGTTGTGATGGCTGG+TGG + chr5_3:13637268-13637287 Msa0800250:CDS 60.0%
! GGTTGTGATGGCTGGTGGTG+CGG + chr5_3:13637273-13637292 Msa0800250:CDS 60.0%
AGTATGGCAACTCCGGCGAG+TGG + chr5_3:13637301-13637320 Msa0800250:CDS 60.0%
GTATGGCAACTCCGGCGAGT+GGG + chr5_3:13637302-13637321 Msa0800250:CDS 60.0%
TATGGCAACTCCGGCGAGTG+GGG + chr5_3:13637303-13637322 Msa0800250:CDS 60.0%
GACGAAAAGCAATCCCGGCC+CGG + chr5_3:13638009-13638028 Msa0800250:intron 60.0%
TCTCAGTTTAACGGCCGGGC+CGG - chr5_3:13638026-13638045 None:intergenic 60.0%
CGGAGGCTCACCAATCACCA+AGG - chr5_3:13638934-13638953 None:intergenic 60.0%
TAAGGCGAGATGGCTCTCGG+AGG - chr5_3:13638951-13638970 None:intergenic 60.0%
GCAACCTCTTCAAGGCCCAC+AGG + chr5_3:13640316-13640335 Msa0800250:CDS 60.0%
AGTCCCTGTGGGCCTTGAAG+AGG - chr5_3:13640323-13640342 None:intergenic 60.0%
CGTGGAGAAGCGAGCTAAGG+TGG + chr5_3:13640692-13640711 Msa0800250:CDS 60.0%
GGCGGCGGAGGTGGAAGAAT+GGG - chr5_3:13636995-13637014 None:intergenic 65.0%
!! CTCATCGGAGGTGGTGGTGG+CGG - chr5_3:13637040-13637059 None:intergenic 65.0%
! GGACTCATCGGAGGTGGTGG+TGG - chr5_3:13637043-13637062 None:intergenic 65.0%
GAAATCACCGGCGGTGGAGG+TGG - chr5_3:13637142-13637161 None:intergenic 65.0%
! CGTGACGAAGGAGGTGGTGG+AGG - chr5_3:13637202-13637221 None:intergenic 65.0%
GACCGTGACGAAGGAGGTGG+TGG - chr5_3:13637205-13637224 None:intergenic 65.0%
TCCTTCGTCACGGTCGGCGA+CGG + chr5_3:13637210-13637229 Msa0800250:CDS 65.0%
GTCGGCGACGGAGGAAGAGT+GGG + chr5_3:13637222-13637241 Msa0800250:CDS 65.0%
! TGTGATGGCTGGTGGTGCGG+CGG + chr5_3:13637276-13637295 Msa0800250:CDS 65.0%
GGCGGCGAGTATGGCAACTC+CGG + chr5_3:13637294-13637313 Msa0800250:CDS 65.0%
TATCCCACCACCCCACTCGC+CGG - chr5_3:13637316-13637335 None:intergenic 65.0%
CTCAGTTTAACGGCCGGGCC+GGG - chr5_3:13638025-13638044 None:intergenic 65.0%
GGGCGGCGGAGGTGGAAGAA+TGG - chr5_3:13636996-13637015 None:intergenic 70.0%
ATTGGCGACGGAGCACGGGG+CGG - chr5_3:13637013-13637032 None:intergenic 70.0%
!! GGCATTGGCGACGGAGCACG+GGG - chr5_3:13637016-13637035 None:intergenic 70.0%
!! CGGCATTGGCGACGGAGCAC+GGG - chr5_3:13637017-13637036 None:intergenic 70.0%
!! GCGGCATTGGCGACGGAGCA+CGG - chr5_3:13637018-13637037 None:intergenic 70.0%
!! ATCGGAGGTGGTGGTGGCGG+CGG - chr5_3:13637037-13637056 None:intergenic 70.0%
ATCACCGGCGGTGGAGGTGG+TGG - chr5_3:13637139-13637158 None:intergenic 70.0%
GCCGACCGTGACGAAGGAGG+TGG - chr5_3:13637208-13637227 None:intergenic 70.0%
GTCGCCGACCGTGACGAAGG+AGG - chr5_3:13637211-13637230 None:intergenic 70.0%
TCCGTCGCCGACCGTGACGA+AGG - chr5_3:13637214-13637233 None:intergenic 70.0%
TTCGTCACGGTCGGCGACGG+AGG + chr5_3:13637213-13637232 Msa0800250:CDS 70.0%
GGTCGGCGACGGAGGAAGAG+TGG + chr5_3:13637221-13637240 Msa0800250:CDS 70.0%
! TGGTGGTGCGGCGGCGAGTA+TGG + chr5_3:13637285-13637304 Msa0800250:CDS 70.0%
AACTCCGGCGAGTGGGGTGG+TGG + chr5_3:13637309-13637328 Msa0800250:CDS 70.0%
ACTCCGGCGAGTGGGGTGGT+GGG + chr5_3:13637310-13637329 Msa0800250:CDS 70.0%
!! GGTGGCGGCGGCATTGGCGA+CGG - chr5_3:13637025-13637044 None:intergenic 75.0%
!! GGTGGTGGTGGCGGCGGCAT+TGG - chr5_3:13637031-13637050 None:intergenic 75.0%
!! GGTGGTGGCGGTGGAGGAGG+CGG - chr5_3:13637124-13637143 None:intergenic 75.0%
!! GGAGGTGGTGGCGGTGGAGG+AGG - chr5_3:13637127-13637146 None:intergenic 75.0%
!! GGTGGAGGTGGTGGCGGTGG+AGG - chr5_3:13637130-13637149 None:intergenic 75.0%
ACCGCCACCACCTCCACCGC+CGG + chr5_3:13637132-13637151 Msa0800250:CDS 75.0%
! ACCGGCGGTGGAGGTGGTGG+CGG - chr5_3:13637136-13637155 None:intergenic 75.0%
GGCAACTCCGGCGAGTGGGG+TGG + chr5_3:13637306-13637325 Msa0800250:CDS 75.0%
!! GGTGGCGGTGGAGGAGGCGG+AGG - chr5_3:13637121-13637140 None:intergenic 80.0%
!!! GGCGGTGGAGGTGGTGGCGG+TGG - chr5_3:13637133-13637152 None:intergenic 80.0%
! GGAGCACGGGGCGGCGGAGG+TGG - chr5_3:13637004-13637023 None:intergenic 85.0%
! GACGGAGCACGGGGCGGCGG+AGG - chr5_3:13637007-13637026 None:intergenic 85.0%
! GGCGACGGAGCACGGGGCGG+CGG - chr5_3:13637010-13637029 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13636489 13641375 13636489 ID=Msa0800250;Name=Msa0800250
chr5_3 mRNA 13636489 13641375 13636489 ID=Msa0800250-mRNA-1;Parent=Msa0800250;Name=Msa0800250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=284|1|1|1|1|1|4|443|650
chr5_3 exon 13636489 13637508 13636489 ID=Msa0800250-mRNA-1:exon:5615;Parent=Msa0800250-mRNA-1
chr5_3 exon 13637754 13637959 13637754 ID=Msa0800250-mRNA-1:exon:5616;Parent=Msa0800250-mRNA-1
chr5_3 exon 13638520 13638743 13638520 ID=Msa0800250-mRNA-1:exon:5617;Parent=Msa0800250-mRNA-1
chr5_3 exon 13640146 13641375 13640146 ID=Msa0800250-mRNA-1:exon:5618;Parent=Msa0800250-mRNA-1
chr5_3 five_prime_UTR 13636489 13636772 13636489 ID=Msa0800250-mRNA-1:five_prime_utr;Parent=Msa0800250-mRNA-1
chr5_3 CDS 13636773 13637508 13636773 ID=Msa0800250-mRNA-1:cds;Parent=Msa0800250-mRNA-1
chr5_3 CDS 13637754 13637959 13637754 ID=Msa0800250-mRNA-1:cds;Parent=Msa0800250-mRNA-1
chr5_3 CDS 13638520 13638743 13638520 ID=Msa0800250-mRNA-1:cds;Parent=Msa0800250-mRNA-1
chr5_3 CDS 13640146 13640932 13640146 ID=Msa0800250-mRNA-1:cds;Parent=Msa0800250-mRNA-1
chr5_3 three_prime_UTR 13640933 13641375 13640933 ID=Msa0800250-mRNA-1:three_prime_utr;Parent=Msa0800250-mRNA-1
Gene Sequence

>Msa0800250

ATGGGTTGTTGCTATTCAAGAGTAGAGAGAGAAGAAACAGTGTCACATTGCAAATCAAGAAAACGTTACATGAAACAGTTGGTTGAAGCAAGACATGCTTTTTCAGCTTCCCATGTTATGTACATTCGTTCTCTTCGTTCAACTGGTTCTGCTTTGTTTCACTTTGCTAACGCTGAAAAAACCACTCATCTTAACCACCATCTTCCACCTGAGCCACAACCCATTCTTCCACCTCCGCCGCCCCGTGCTCCGTCGCCAATGCCGCCGCCACCACCACCTCCGATGAGTCCTAGTTTGAGTTCTTATACTTGGACTTCTGGTACTGGTTCACAATCATCTGCACTTCCTCCGCCTCCTCCACCGCCACCACCTCCACCGCCGGTGATTTCATCTGGTTGGGATTTCTGGGATCCTTTCATGCAGCAACCTCCACCACCTCCTTCGTCACGGTCGGCGACGGAGGAAGAGTGGGAAGCTACTACTACCACTGGCTCTGAGGTGGTTGTGATGGCTGGTGGTGCGGCGGCGAGTATGGCAACTCCGGCGAGTGGGGTGGTGGGATACTCTAAGGAGTCAGGAAGTGAACTTGCAATGGTGGTTTCAAGAAACAGTAAAGATCTGGTTGAAGTTATTAAGGAGCTTGATGATTATTTTCTTAAAGCTGCTGATGCTGGTTCTCATGTTTCATATCTGTTACAAGTTCCAAGTTCTGGTTTTTCTGATCATAGTAAAGCAAGTAAAATGTACGGAAATGGATGGAATTTGAGTCCATCAATGTGGGCTTGGGGTTCTTCAAGTCCTAAACTGAATGGATTTGGCAAGCTGTCTCAAGAGGTTTCTGTTGGTAGTTTTAGGGCTAATAATGGTGTTGGAAATGGTGGACATTGCTCTACTTTGGAGAGGCTATATGCATGGGAGAAGAAATTGTACCAAGAGGTCAAGAATGCTAAAACAATAAAGATGGAGCATGAGAAGAAGGTAGAATTGGTAAGGAAGTTAGAGATGAGAAGGGCTGATTATGTGAAGACAGAAAAGGCAAAGAAAGAAGTGGAGAAATTAGAATCACAAATGATGGTTGCTTCACAAACCATTGATAGTACATCCGCTGAAATCGTTAAATTAAGGGAGATAGAGCTCTACCCTCAACTCATTGAGCTTGTTAAAGGGTTGATGTGCATGTGGAGAAGCATGTATGAGTGTCATCAAGTTCAGAAGCACATAGTTCAGCAACTGGAATACCTCAATACCATACCATCAAATAACCCTACATCTGAAATTCATAGGCAATCAACACTTCAGCTGGAGCTTGAAGTACAGCAATGGCACCAATCCTTCTGCAACCTCTTCAAGGCCCACAGGGACTATATTGAATCCCTCAGTGGTTGGCTAAGGCTCAGCCTTTACCAATTTAGCCGAAACCCTCTTAGTAGAACAACTGAGGAGTCGAAGATATTCACCCTCTGCGAACAATGGCACCTTGCCGTTGAGCATATACCAGACAAAGTAGCATCTGAAGGAATAAAAAGCTTGTTGACGGTTATTCATGCGATTGTAGTTCAACAGACGGAGGAGCATAAACAAAAGAAGAAGTCAGAGTATGCGTTCAAGGAGTTCGAGAAGAAGGTGGTTCAGCTTAGATCTTTGGAGTGCAAGTATGGTCCGTACTCCATGTCGGAACGATCTGGTTCTGTGAGAAGAACGAAGGACCCTGTCGTGGAGAAGCGAGCTAAGGTGGAAGCTTTCAGAGCAAAGGCTGAAGAAGAGAAGATCAAGCATGAAAAGGCAGTGAGTGTTACAAGGTCAATGACATTGAATAACTTGCAAATGGGTTGTCCTCAAGTTTTTCAAGGGATTGTAGGGTTTTCAAGTGTGTGCATGGAGGCTTTTGAATCTGTATACAACAAAGCCAAAGTTGCCGAACAGGAGCGTGATGTGAAGAGAATATTACCTTAG
Protein sequence

>Msa0800250

MGCCYSRVEREETVSHCKSRKRYMKQLVEARHAFSASHVMYIRSLRSTGSALFHFANAEKTTHLNHHLPPEPQPILPPPPPRAPSPMPPPPPPPMSPSLSSYTWTSGTGSQSSALPPPPPPPPPPPPVISSGWDFWDPFMQQPPPPPSSRSATEEEWEATTTTGSEVVVMAGGAAASMATPASGVVGYSKESGSELAMVVSRNSKDLVEVIKELDDYFLKAADAGSHVSYLLQVPSSGFSDHSKASKMYGNGWNLSPSMWAWGSSSPKLNGFGKLSQEVSVGSFRANNGVGNGGHCSTLERLYAWEKKLYQEVKNAKTIKMEHEKKVELVRKLEMRRADYVKTEKAKKEVEKLESQMMVASQTIDSTSAEIVKLREIELYPQLIELVKGLMCMWRSMYECHQVQKHIVQQLEYLNTIPSNNPTSEIHRQSTLQLELEVQQWHQSFCNLFKAHRDYIESLSGWLRLSLYQFSRNPLSRTTEESKIFTLCEQWHLAVEHIPDKVASEGIKSLLTVIHAIVVQQTEEHKQKKKSEYAFKEFEKKVVQLRSLECKYGPYSMSERSGSVRRTKDPVVEKRAKVEAFRAKAEEEKIKHEKAVSVTRSMTLNNLQMGCPQVFQGIVGFSSVCMEAFESVYNKAKVAEQERDVKRILP*