AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169190 MtrunA17_Chr7g0263701 94.884 606 30 1 3 608 6 610 0.0 1052
Msa1169190 MtrunA17_Chr1g0181611 61.165 618 188 8 3 608 9 586 0.0 630
Msa1169190 MtrunA17_Chr4g0030031 46.021 578 283 5 48 605 49 617 1.78e-142 427
Msa1169190 MtrunA17_Chr2g0326021 41.232 422 218 9 192 605 133 532 1.09e-69 235
Msa1169190 MtrunA17_Chr5g0395261 26.590 346 181 11 1 302 13 329 1.96e-12 70.5
Msa1169190 MtrunA17_Chr4g0039981 27.215 316 197 12 1 287 1 312 2.29e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169190 AT2G37080.3 48.083 626 251 14 4 607 7 580 2.53e-156 461
Msa1169190 AT2G37080.1 47.930 628 251 15 4 607 7 582 3.60e-154 456
Msa1169190 AT2G37080.2 47.930 628 251 15 4 607 7 582 3.60e-154 456
Msa1169190 AT5G60210.2 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1169190 AT5G60210.4 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1169190 AT5G60210.1 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1169190 AT5G60210.6 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1169190 AT5G60210.5 38.662 613 313 10 1 605 28 585 4.69e-104 327
Msa1169190 AT5G60210.3 38.662 613 313 10 1 605 28 585 4.69e-104 327
Msa1169190 AT3G53350.8 37.571 354 173 15 1 333 15 341 1.11e-41 155
Msa1169190 AT3G53350.8 35.955 356 106 11 258 607 165 404 1.33e-35 139
Msa1169190 AT3G53350.3 37.784 352 171 15 3 333 6 330 1.56e-41 155
Msa1169190 AT3G53350.3 36.415 357 103 12 258 607 154 393 7.13e-36 139
Msa1169190 AT3G53350.2 37.784 352 171 15 3 333 6 330 1.56e-41 155
Msa1169190 AT3G53350.2 36.415 357 103 12 258 607 154 393 7.13e-36 139
Msa1169190 AT3G53350.4 37.360 356 173 16 1 333 15 343 8.58e-40 150
Msa1169190 AT3G53350.4 32.773 476 183 15 142 607 58 406 8.86e-36 139
Msa1169190 AT3G53350.6 37.360 356 173 16 1 333 15 343 8.58e-40 150
Msa1169190 AT3G53350.6 32.773 476 183 15 142 607 58 406 8.86e-36 139
Msa1169190 AT3G53350.7 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1169190 AT3G53350.7 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1169190 AT3G53350.1 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1169190 AT3G53350.1 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1169190 AT3G53350.5 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1169190 AT3G53350.5 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1169190 AT3G53350.9 34.908 381 170 16 4 333 7 360 1.31e-35 139
Msa1169190 AT3G53350.9 35.955 356 106 11 258 607 184 423 3.23e-35 138
Msa1169190 AT1G78430.1 35.294 170 97 4 437 605 163 320 5.07e-16 80.1
Msa1169190 AT1G17140.1 35.028 177 95 7 437 605 176 340 1.38e-13 72.8
Msa1169190 AT1G17140.2 35.028 177 95 7 437 605 176 340 1.38e-13 72.8

Find 126 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCTTTGGGACATTTC+TGG 0.157878 7_4:+62116499 None:intergenic
CAGGAAAATGAGGAGATAAA+TGG 0.230127 7_4:-62114926 Msa1169190:CDS
TCACGAGCTTTAGAAGTAAT+TGG 0.259559 7_4:-62115136 Msa1169190:CDS
GTCTGATCATGCTCAGATTC+AGG 0.282526 7_4:-62115239 Msa1169190:CDS
TCATCTGTGTCTTCTAAATA+AGG 0.285675 7_4:+62114110 None:intergenic
CAGAGTTGGAAGCCGAATTA+AGG 0.288025 7_4:-62114283 Msa1169190:CDS
AGCAAGTAGTATCAAAATTA+TGG 0.289089 7_4:-62113833 Msa1169190:three_prime_UTR
CAATTTATGTATTTCATTCA+TGG 0.304232 7_4:+62115318 None:intergenic
GTTTCAAATACCTCAGATAT+TGG 0.308574 7_4:+62116334 None:intergenic
GGTATCTTTCTTATGGGGTT+TGG 0.312528 7_4:+62116403 None:intergenic
TTGTAGCAGGTGATTTCCTT+TGG 0.322465 7_4:+62116488 None:intergenic
AACTTTCAATCTCCTTAATT+CGG 0.325865 7_4:+62114271 None:intergenic
ACTTTCGGACTCATGTCTTT+TGG 0.331128 7_4:+62116382 None:intergenic
TCAAGCTGTTCAACCGTTAT+AGG 0.334380 7_4:-62113912 Msa1169190:three_prime_UTR
AATCCATTGAGTGCTGCTTT+TGG 0.335138 7_4:+62115359 None:intergenic
CAACTGCTCTACTTCAGATT+TGG 0.349820 7_4:+62114880 None:intergenic
GACTAGCAAGGTTCAGGAAT+TGG 0.351633 7_4:-62115635 Msa1169190:CDS
AACCTGCGTTCGTTTACTTT+CGG 0.363041 7_4:+62116367 None:intergenic
TGGATGTTGTTATTATTGTT+AGG 0.377779 7_4:-62113967 Msa1169190:three_prime_UTR
TAGTGAAGCTATCTCTGTTA+TGG 0.380107 7_4:-62115200 Msa1169190:CDS
TTCTTGAAGTCGTGCTTCTT+CGG 0.385930 7_4:+62115438 None:intergenic
TATCCTCAAGATGGAGATAA+AGG 0.393747 7_4:-62114477 Msa1169190:CDS
GAAGCGGACTAGCAAGGTTC+AGG 0.395117 7_4:-62115641 Msa1169190:CDS
CAGAGTTTGGTGTCTTCAAC+TGG 0.396120 7_4:+62116449 None:intergenic
ATTATGGATGAAAATGTGTT+TGG 0.399588 7_4:-62113817 Msa1169190:three_prime_UTR
TTCTAATCTGCAATGTGCTC+TGG 0.400148 7_4:+62114810 None:intergenic
TTGGGACATTTCTGGAGCAT+TGG 0.409864 7_4:+62116507 None:intergenic
TGGCAAAATGCAAATGCAAT+TGG 0.415697 7_4:-62115116 Msa1169190:CDS
GTTGTTAGTCTGAGAAAATT+CGG 0.416762 7_4:+62115267 None:intergenic
TGTAGCAGGTGATTTCCTTT+GGG 0.418456 7_4:+62116489 None:intergenic
TAGAAGTGCTTACGAACAAC+TGG 0.419369 7_4:-62114792 Msa1169190:CDS
CTGAGAAAGTCCCTTTCCAT+TGG 0.424088 7_4:+62114946 None:intergenic
GACAAAACTTAGCTATGTAA+TGG 0.430384 7_4:-62114378 Msa1169190:CDS
CTCAATGGATTCATCTGCTC+TGG 0.431947 7_4:-62115347 Msa1169190:CDS
TACTTCTAAAGCTCGTGATT+CGG 0.433669 7_4:+62115141 None:intergenic
TCTTATGGGGTTTGGTGAGG+AGG 0.433762 7_4:+62116411 None:intergenic
GCCGAGTTAGAACCAGAGTT+TGG 0.447004 7_4:+62116436 None:intergenic
CAATGGAAAGGGACTTTCTC+AGG 0.447323 7_4:-62114945 Msa1169190:CDS
TTCCTCTTGGTATCTTATCT+CGG 0.450936 7_4:+62114838 None:intergenic
TGTTAGGTATTACTAGTGTC+TGG 0.453787 7_4:-62113951 Msa1169190:three_prime_UTR
AGGAAAATGAGGAGATAAAT+GGG 0.455434 7_4:-62114925 Msa1169190:CDS
CGAACAGCTAGATGCTGCTC+AGG 0.462034 7_4:-62114315 Msa1169190:CDS
ATCTCAATTGCTGAGTTTGT+CGG 0.465945 7_4:-62114663 Msa1169190:CDS
TATGGGGTTTGGTGAGGAGG+AGG 0.467777 7_4:+62116414 None:intergenic
CTTTCTTATGGGGTTTGGTG+AGG 0.468528 7_4:+62116408 None:intergenic
GGATTTGATGACAATAAAAC+AGG 0.472389 7_4:+62113858 None:intergenic
ACAGCTTGATTCAAGAAAGT+TGG 0.472665 7_4:+62113926 None:intergenic
AAAATCTCAAGCAAAATCCT+TGG 0.473358 7_4:-62115002 Msa1169190:CDS
TGCTCTGGATGTATTCCTCT+TGG 0.476597 7_4:+62114825 None:intergenic
CTGAATTATACGAGGAATTG+AGG 0.480140 7_4:-62114736 Msa1169190:CDS
AACAGCAAGGGCTGCAGAGA+AGG 0.483686 7_4:-62114408 Msa1169190:CDS
GAGTTTGTCGGCGGAGAATG+AGG 0.485321 7_4:-62114651 Msa1169190:CDS
AAAAGCAAGCCTGATGGAAA+AGG 0.487342 7_4:-62114687 Msa1169190:CDS
AGAACTCAGTAAAATATCTC+AGG 0.492404 7_4:-62115419 Msa1169190:CDS
CTGAGCAGCATCTAGCTGTT+CGG 0.497006 7_4:+62114316 None:intergenic
TATGCTAATTGGCTTATGGC+TGG 0.501671 7_4:-62116535 None:intergenic
CTTTCTACCACCGGAAACAA+TGG 0.502144 7_4:-62114203 Msa1169190:CDS
TAATTCAGCCTCTCTCTCAC+TGG 0.507829 7_4:+62114751 None:intergenic
AAGTCGTGCTTCTTCGGAAG+CGG 0.510056 7_4:+62115444 None:intergenic
ATGAAAAGCGATCTACTGAC+AGG 0.512449 7_4:-62114610 Msa1169190:CDS
TTCAACTGGCGAGCAGTTCG+AGG 0.516234 7_4:+62116463 None:intergenic
ATCTCAAGCAAAATCCTTGG+AGG 0.518596 7_4:-62114999 Msa1169190:CDS
CTTGACACTGATTCAACCAA+TGG 0.522965 7_4:-62114962 Msa1169190:CDS
AACTTAACTCATCGGAGTCA+TGG 0.524619 7_4:-62115564 Msa1169190:CDS
CAAGATGGAGATAAAGGAGT+TGG 0.532655 7_4:-62114471 Msa1169190:CDS
ACTGTCCCTGTCAAAAGAGC+TGG 0.533173 7_4:-62115497 Msa1169190:CDS
GCAGTTCGAGGAGTTGTAGC+AGG 0.533468 7_4:+62116475 None:intergenic
GGGACTTTCTCAGGAAAATG+AGG 0.534716 7_4:-62114936 Msa1169190:CDS
AGAAAACAGTATCCTCAAGA+TGG 0.537638 7_4:-62114486 Msa1169190:CDS
AGAGCAGTTGAAATCTGCAT+TGG 0.538094 7_4:-62114867 Msa1169190:CDS
TGTCCAAAAGCAGCACTCAA+TGG 0.543706 7_4:-62115362 Msa1169190:CDS
GACAGTGGAGACACTCCAAT+CGG 0.544738 7_4:-62115080 Msa1169190:CDS
CACTGAAGAGGCTGTTGAGT+CGG 0.545865 7_4:-62114435 Msa1169190:CDS
ATCAGAATCCAGTGAGAGAG+AGG 0.548200 7_4:-62114759 Msa1169190:CDS
ACTGATTCAACCAATGGAAA+GGG 0.548724 7_4:-62114956 Msa1169190:CDS
TTGTAGAAACAAAATACAGT+AGG 0.551756 7_4:+62113887 None:intergenic
GGAAACAATGGAAAATGTGT+AGG 0.557199 7_4:-62114191 Msa1169190:CDS
AGTTTGTCGGCGGAGAATGA+GGG 0.561099 7_4:-62114650 Msa1169190:CDS
CACTGATTCAACCAATGGAA+AGG 0.561480 7_4:-62114957 Msa1169190:CDS
ATGCTCAGATTCAGGACTTG+AGG 0.568384 7_4:-62115231 Msa1169190:CDS
AAGGTCCGAAAACTGTTGAC+GGG 0.568934 7_4:+62115468 None:intergenic
ATGGAAGACAAAAGTTCAAG+AGG 0.570660 7_4:-62115545 Msa1169190:CDS
GAAACAATGGAAAATGTGTA+GGG 0.570873 7_4:-62114190 Msa1169190:CDS
TTGTTCCAACTCAAAAGCTA+AGG 0.572666 7_4:+62115027 None:intergenic
AAAGGTCCGAAAACTGTTGA+CGG 0.573588 7_4:+62115467 None:intergenic
TGTAGAAACAAAATACAGTA+GGG 0.573798 7_4:+62113888 None:intergenic
ACCAAACTCTGGTTCTAACT+CGG 0.577387 7_4:-62116437 Msa1169190:CDS
ACTCCTTTATCTCCATCTTG+AGG 0.578972 7_4:+62114474 None:intergenic
GCAGAATAAAATCACTGAAG+AGG 0.581197 7_4:-62114447 Msa1169190:CDS
GAATTGAGGAAAGCTATAGC+TGG 0.584443 7_4:-62114722 Msa1169190:CDS
TTTCCTCACAAGTTCCTCCA+AGG 0.584609 7_4:+62114985 None:intergenic
CAGTTGAAGACACCAAACTC+TGG 0.589837 7_4:-62116448 Msa1169190:CDS
CTCAGGATCGAGATCGTGCA+TGG 0.590550 7_4:-62115402 Msa1169190:CDS
TCAGGCTGCAAATTCAGAGT+TGG 0.590572 7_4:-62114297 Msa1169190:CDS
AATACAGTAGGGTCCTATAA+CGG 0.593252 7_4:+62113899 None:intergenic
TTAGAAGAAGCGGACTAGCA+AGG 0.593878 7_4:-62115647 Msa1169190:intron
TAGCTATGTAATGGAAGAAG+CGG 0.596332 7_4:-62114369 Msa1169190:CDS
TTGAGTCGGTTGAAACAGCA+AGG 0.601134 7_4:-62114421 Msa1169190:CDS
AGAGCTAAAAGCAAGCCTGA+TGG 0.601156 7_4:-62114693 Msa1169190:CDS
GTGCTTCTTCGGAAGCGGAA+AGG 0.601435 7_4:+62115449 None:intergenic
AGAAGATCTGAAGAGTGCTA+AGG 0.601647 7_4:-62115590 Msa1169190:CDS
TAAGGATCAACTTAACTCAT+CGG 0.603512 7_4:-62115572 Msa1169190:CDS
GCATCTATACTTTCTACCAC+CGG 0.615034 7_4:-62114212 Msa1169190:CDS
TGCATGGCAATCTGAACTTG+AGG 0.624261 7_4:-62115386 Msa1169190:CDS
AGAAGATTGGAGTGTTGTGG+AGG 0.624386 7_4:-62114052 Msa1169190:CDS
GTTTGTCGGCGGAGAATGAG+GGG 0.630308 7_4:-62114649 Msa1169190:CDS
TGAAAGTTCAGTCTGATCAG+TGG 0.639619 7_4:-62114256 Msa1169190:CDS
TCAATTGCTGAGTTTGTCGG+CGG 0.644952 7_4:-62114660 Msa1169190:CDS
GTGGAGACACTCCAATCGGA+TGG 0.646462 7_4:-62115076 Msa1169190:CDS
TGATCAGTGGAGAAAAGCAG+CGG 0.646992 7_4:-62114243 Msa1169190:CDS
ATCACACAGTCCAATATCTG+AGG 0.647969 7_4:-62116344 Msa1169190:intron
AATCCTTGGAGGAACTTGTG+AGG 0.648483 7_4:-62114988 Msa1169190:CDS
TCAGATTCAGGACTTGAGGA+TGG 0.651660 7_4:-62115227 Msa1169190:CDS
TCAGTGGAGAAAAGCAGCGG+AGG 0.652899 7_4:-62114240 Msa1169190:CDS
TGAAGAAGATTGGAGTGTTG+TGG 0.655720 7_4:-62114055 Msa1169190:CDS
GAAGACAAAAGTTCAAGAGG+AGG 0.660033 7_4:-62115542 Msa1169190:CDS
GGATAAAAGTAACAGAAGAG+TGG 0.662477 7_4:-62114348 Msa1169190:CDS
TGCCGAGATAAGATACCAAG+AGG 0.662730 7_4:-62114840 Msa1169190:CDS
ATGCTCCAGAAATGTCCCAA+AGG 0.664123 7_4:-62116504 Msa1169190:CDS
TGAAAAGCGATCTACTGACA+GGG 0.672889 7_4:-62114609 Msa1169190:CDS
GTCCGAAAGTAAACGAACGC+AGG 0.685794 7_4:-62116369 Msa1169190:CDS
GGAAACAGTAAATAAGACAG+TGG 0.686379 7_4:-62115095 Msa1169190:CDS
AGATTTGGCAGAGATAAGCG+CGG 0.695807 7_4:+62114895 None:intergenic
TGAGTCGGTTGAAACAGCAA+GGG 0.701089 7_4:-62114420 Msa1169190:CDS
TGGATACTGATGTTGCAGAG+TGG 0.711923 7_4:-62114556 Msa1169190:CDS
GAGAGAGGCTGAATTATACG+AGG 0.729149 7_4:-62114744 Msa1169190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAATCAATTAAGTT+GGG + chr7_4:62114153-62114172 None:intergenic 10.0%
!!! GATGAATATTAAAAATATTT+TGG + chr7_4:62114609-62114628 None:intergenic 10.0%
!! CATAAATTAATCAATTAAGT+TGG + chr7_4:62114154-62114173 None:intergenic 15.0%
!!! GATTAATTTATGAGTATTTT+TGG - chr7_4:62114162-62114181 Msa1169190:CDS 15.0%
!! AAATATCAAATATAAGCAAA+TGG + chr7_4:62114312-62114331 None:intergenic 15.0%
!!! GTTCGTAAATTTTTTTTTTA+TGG - chr7_4:62114531-62114550 Msa1169190:CDS 15.0%
!! TAATAATAATTGAGTTCAGA+GGG + chr7_4:62114020-62114039 None:intergenic 20.0%
!! ATAATAATAATTGAGTTCAG+AGG + chr7_4:62114021-62114040 None:intergenic 20.0%
!! AGAGATAATTATTATAACGA+GGG + chr7_4:62114129-62114148 None:intergenic 20.0%
!! AAGAGATAATTATTATAACG+AGG + chr7_4:62114130-62114149 None:intergenic 20.0%
!! TGGAATAATAACATTAAATG+TGG - chr7_4:62114182-62114201 Msa1169190:CDS 20.0%
!! CAATTTATGTATTTCATTCA+TGG + chr7_4:62115009-62115028 None:intergenic 20.0%
!!! ATGTTTTTGTTTTTCTTCTT+TGG + chr7_4:62116247-62116266 None:intergenic 20.0%
!! TCTTTTGGTATCTTTCTTAT+GGG + chr7_4:62113930-62113949 None:intergenic 25.0%
! ATCTTGAATTCATGTGAAAA+CGG - chr7_4:62114083-62114102 Msa1169190:CDS 25.0%
! GAGATAATTATTATAACGAG+GGG + chr7_4:62114128-62114147 None:intergenic 25.0%
! TATTTGAGTCCAACAAATTT+AGG - chr7_4:62114327-62114346 Msa1169190:CDS 25.0%
! TATTTGAGTCCAACAAATTT+AGG - chr7_4:62114327-62114346 Msa1169190:CDS 25.0%
! AGTATCTATCAATATCATCA+AGG + chr7_4:62114477-62114496 None:intergenic 25.0%
! GATAGATACTTATTGTTTAG+TGG - chr7_4:62114487-62114506 Msa1169190:CDS 25.0%
!! TTATAATGTGTCTCTTTTTC+TGG - chr7_4:62114652-62114671 Msa1169190:CDS 25.0%
! TATGGAAAAACTAAGAAATG+AGG - chr7_4:62115142-62115161 Msa1169190:CDS 25.0%
!!! TTCAGTTACTTTTTTCAACT+CGG + chr7_4:62115819-62115838 None:intergenic 25.0%
! AACTTTCAATCTCCTTAATT+CGG + chr7_4:62116056-62116075 None:intergenic 25.0%
!! TGTACTCTTTTTATTCTTAC+TGG - chr7_4:62116337-62116356 Msa1169190:intron 25.0%
!! TGGATGTTGTTATTATTGTT+AGG - chr7_4:62116357-62116376 Msa1169190:CDS 25.0%
! TGTAGAAACAAAATACAGTA+GGG + chr7_4:62116439-62116458 None:intergenic 25.0%
! TTGTAGAAACAAAATACAGT+AGG + chr7_4:62116440-62116459 None:intergenic 25.0%
!!! AATTTTGATACTACTTGCTA+AGG + chr7_4:62116490-62116509 None:intergenic 25.0%
! AGCAAGTAGTATCAAAATTA+TGG - chr7_4:62116491-62116510 Msa1169190:CDS 25.0%
! ATTATGGATGAAAATGTGTT+TGG - chr7_4:62116507-62116526 Msa1169190:CDS 25.0%
! CTTTTGGTATCTTTCTTATG+GGG + chr7_4:62113929-62113948 None:intergenic 30.0%
! GTCTTTTGGTATCTTTCTTA+TGG + chr7_4:62113931-62113950 None:intergenic 30.0%
GTTTCAAATACCTCAGATAT+TGG + chr7_4:62113993-62114012 None:intergenic 30.0%
!! AAAAGAGTGCCTAAATTTGT+TGG + chr7_4:62114339-62114358 None:intergenic 30.0%
!! AAAAGAGTGCCTAAATTTGT+TGG + chr7_4:62114339-62114358 None:intergenic 30.0%
! TCTTTTGCTAATAATGTGGA+TGG - chr7_4:62114405-62114424 Msa1169190:CDS 30.0%
! CTTTTGCTAATAATGTGGAT+GGG - chr7_4:62114406-62114425 Msa1169190:CDS 30.0%
TAAGGATCAACTTAACTCAT+CGG - chr7_4:62114752-62114771 Msa1169190:CDS 30.0%
AGAACTCAGTAAAATATCTC+AGG - chr7_4:62114905-62114924 Msa1169190:CDS 30.0%
! GTTGTTAGTCTGAGAAAATT+CGG + chr7_4:62115060-62115079 None:intergenic 30.0%
AAAATCTCAAGCAAAATCCT+TGG - chr7_4:62115322-62115341 Msa1169190:CDS 30.0%
AGGAAAATGAGGAGATAAAT+GGG - chr7_4:62115399-62115418 Msa1169190:CDS 30.0%
GACAAAACTTAGCTATGTAA+TGG - chr7_4:62115946-62115965 Msa1169190:intron 30.0%
! TACACATTTTCCATTGTTTC+CGG + chr7_4:62116134-62116153 None:intergenic 30.0%
GAAACAATGGAAAATGTGTA+GGG - chr7_4:62116134-62116153 Msa1169190:intron 30.0%
TCATCTGTGTCTTCTAAATA+AGG + chr7_4:62116217-62116236 None:intergenic 30.0%
AAAAACATGCTGAAGAAGAT+TGG - chr7_4:62116259-62116278 Msa1169190:intron 30.0%
! GGATTTGATGACAATAAAAC+AGG + chr7_4:62116469-62116488 None:intergenic 30.0%
! TATTATAACGAGGGGCATAT+TGG + chr7_4:62114120-62114139 None:intergenic 35.0%
TACTTGACATTTAACCCACT+TGG - chr7_4:62114211-62114230 Msa1169190:CDS 35.0%
ACTTGACATTTAACCCACTT+GGG - chr7_4:62114212-62114231 Msa1169190:CDS 35.0%
CAAATATAAGCAAATGGCAC+CGG + chr7_4:62114306-62114325 None:intergenic 35.0%
! GCACTCTTTTGCTAATAATG+TGG - chr7_4:62114401-62114420 Msa1169190:CDS 35.0%
!!! TTTTCTGGCTTTAGAAGAAG+CGG - chr7_4:62114667-62114686 Msa1169190:CDS 35.0%
ATGGAAGACAAAAGTTCAAG+AGG - chr7_4:62114779-62114798 Msa1169190:CDS 35.0%
TAGTGAAGCTATCTCTGTTA+TGG - chr7_4:62115124-62115143 Msa1169190:CDS 35.0%
!! TACTTCTAAAGCTCGTGATT+CGG + chr7_4:62115186-62115205 None:intergenic 35.0%
!! TCACGAGCTTTAGAAGTAAT+TGG - chr7_4:62115188-62115207 Msa1169190:CDS 35.0%
TGGCAAAATGCAAATGCAAT+TGG - chr7_4:62115208-62115227 Msa1169190:CDS 35.0%
GGAAACAGTAAATAAGACAG+TGG - chr7_4:62115229-62115248 Msa1169190:CDS 35.0%
!! TTGCTTTTATACCATCCGAT+TGG + chr7_4:62115262-62115281 None:intergenic 35.0%
TTGTTCCAACTCAAAAGCTA+AGG + chr7_4:62115300-62115319 None:intergenic 35.0%
! ACTGATTCAACCAATGGAAA+GGG - chr7_4:62115368-62115387 Msa1169190:CDS 35.0%
CAGGAAAATGAGGAGATAAA+TGG - chr7_4:62115398-62115417 Msa1169190:CDS 35.0%
TTCCTCTTGGTATCTTATCT+CGG + chr7_4:62115489-62115508 None:intergenic 35.0%
CTGAATTATACGAGGAATTG+AGG - chr7_4:62115588-62115607 Msa1169190:CDS 35.0%
! ATTGAGATTCCTTTTCCATC+AGG + chr7_4:62115649-62115668 None:intergenic 35.0%
ATCTCAATTGCTGAGTTTGT+CGG - chr7_4:62115661-62115680 Msa1169190:intron 35.0%
!! AGATCGCTTTTCATTGATAC+TGG + chr7_4:62115708-62115727 None:intergenic 35.0%
TGCTGCAGAACTCAAAAAAA+TGG - chr7_4:62115748-62115767 Msa1169190:intron 35.0%
AGAAAACAGTATCCTCAAGA+TGG - chr7_4:62115838-62115857 Msa1169190:intron 35.0%
TATCCTCAAGATGGAGATAA+AGG - chr7_4:62115847-62115866 Msa1169190:intron 35.0%
GCAGAATAAAATCACTGAAG+AGG - chr7_4:62115877-62115896 Msa1169190:intron 35.0%
! TAGCTATGTAATGGAAGAAG+CGG - chr7_4:62115955-62115974 Msa1169190:intron 35.0%
GGATAAAAGTAACAGAAGAG+TGG - chr7_4:62115976-62115995 Msa1169190:intron 35.0%
GGAAACAATGGAAAATGTGT+AGG - chr7_4:62116133-62116152 Msa1169190:intron 35.0%
GGAAAATGTGTAGGGAAAAA+CGG - chr7_4:62116142-62116161 Msa1169190:intron 35.0%
TGTTAGGTATTACTAGTGTC+TGG - chr7_4:62116373-62116392 Msa1169190:CDS 35.0%
ACAGCTTGATTCAAGAAAGT+TGG + chr7_4:62116401-62116420 None:intergenic 35.0%
AATACAGTAGGGTCCTATAA+CGG + chr7_4:62116428-62116447 None:intergenic 35.0%
!! GATTTCCTTTGGGACATTTC+TGG + chr7_4:62113828-62113847 None:intergenic 40.0%
TGTAGCAGGTGATTTCCTTT+GGG + chr7_4:62113838-62113857 None:intergenic 40.0%
TTGTAGCAGGTGATTTCCTT+TGG + chr7_4:62113839-62113858 None:intergenic 40.0%
!! ACCAAACTCTGGTTCTAACT+CGG - chr7_4:62113887-62113906 Msa1169190:three_prime_UTR 40.0%
GGTATCTTTCTTATGGGGTT+TGG + chr7_4:62113924-62113943 None:intergenic 40.0%
! ACTTTCGGACTCATGTCTTT+TGG + chr7_4:62113945-62113964 None:intergenic 40.0%
AACCTGCGTTCGTTTACTTT+CGG + chr7_4:62113960-62113979 None:intergenic 40.0%
ATCACACAGTCCAATATCTG+AGG - chr7_4:62113980-62113999 Msa1169190:three_prime_UTR 40.0%
! GGTTAGTTAGACTTGCCTTA+TGG - chr7_4:62114427-62114446 Msa1169190:CDS 40.0%
!! AGAAGATCTGAAGAGTGCTA+AGG - chr7_4:62114734-62114753 Msa1169190:CDS 40.0%
AACTTAACTCATCGGAGTCA+TGG - chr7_4:62114760-62114779 Msa1169190:CDS 40.0%
GAAGACAAAAGTTCAAGAGG+AGG - chr7_4:62114782-62114801 Msa1169190:CDS 40.0%
! TTCTTCCAGCTCTTTTGACA+GGG + chr7_4:62114835-62114854 None:intergenic 40.0%
! ATTCTTCCAGCTCTTTTGAC+AGG + chr7_4:62114836-62114855 None:intergenic 40.0%
! AGAATCCCGTCAACAGTTTT+CGG - chr7_4:62114851-62114870 Msa1169190:CDS 40.0%
AAAGGTCCGAAAACTGTTGA+CGG + chr7_4:62114860-62114879 None:intergenic 40.0%
TTCTTGAAGTCGTGCTTCTT+CGG + chr7_4:62114889-62114908 None:intergenic 40.0%
!!! AATCCATTGAGTGCTGCTTT+TGG + chr7_4:62114968-62114987 None:intergenic 40.0%
!! CAAGTCCTTAGCTTTTGAGT+TGG - chr7_4:62115292-62115311 Msa1169190:CDS 40.0%
ATCTCAAGCAAAATCCTTGG+AGG - chr7_4:62115325-62115344 Msa1169190:CDS 40.0%
!! CTTGACACTGATTCAACCAA+TGG - chr7_4:62115362-62115381 Msa1169190:CDS 40.0%
!! CACTGATTCAACCAATGGAA+AGG - chr7_4:62115367-62115386 Msa1169190:CDS 40.0%
CAACTGCTCTACTTCAGATT+TGG + chr7_4:62115447-62115466 None:intergenic 40.0%
AGAGCAGTTGAAATCTGCAT+TGG - chr7_4:62115457-62115476 Msa1169190:CDS 40.0%
TTCTAATCTGCAATGTGCTC+TGG + chr7_4:62115517-62115536 None:intergenic 40.0%
!! TAGAAGTGCTTACGAACAAC+TGG - chr7_4:62115532-62115551 Msa1169190:CDS 40.0%
GAATTGAGGAAAGCTATAGC+TGG - chr7_4:62115602-62115621 Msa1169190:CDS 40.0%
AAAAGCAAGCCTGATGGAAA+AGG - chr7_4:62115637-62115656 Msa1169190:CDS 40.0%
ATGAAAAGCGATCTACTGAC+AGG - chr7_4:62115714-62115733 Msa1169190:intron 40.0%
TGAAAAGCGATCTACTGACA+GGG - chr7_4:62115715-62115734 Msa1169190:intron 40.0%
ACTCCTTTATCTCCATCTTG+AGG + chr7_4:62115853-62115872 None:intergenic 40.0%
CAAGATGGAGATAAAGGAGT+TGG - chr7_4:62115853-62115872 Msa1169190:intron 40.0%
TGAAAGTTCAGTCTGATCAG+TGG - chr7_4:62116068-62116087 Msa1169190:intron 40.0%
GCATCTATACTTTCTACCAC+CGG - chr7_4:62116112-62116131 Msa1169190:intron 40.0%
! ACATTTTCCATTGTTTCCGG+TGG + chr7_4:62116131-62116150 None:intergenic 40.0%
!! TGAAGAAGATTGGAGTGTTG+TGG - chr7_4:62116269-62116288 Msa1169190:intron 40.0%
TCAAGCTGTTCAACCGTTAT+AGG - chr7_4:62116412-62116431 Msa1169190:CDS 40.0%
!! TTGGGACATTTCTGGAGCAT+TGG + chr7_4:62113820-62113839 None:intergenic 45.0%
ATGCTCCAGAAATGTCCCAA+AGG - chr7_4:62113820-62113839 Msa1169190:three_prime_UTR 45.0%
!! CAGAGTTTGGTGTCTTCAAC+TGG + chr7_4:62113878-62113897 None:intergenic 45.0%
CAGTTGAAGACACCAAACTC+TGG - chr7_4:62113876-62113895 Msa1169190:three_prime_UTR 45.0%
!! CTTTCTTATGGGGTTTGGTG+AGG + chr7_4:62113919-62113938 None:intergenic 45.0%
GACATTTAACCCACTTGGGT+TGG - chr7_4:62114216-62114235 Msa1169190:CDS 45.0%
!! TTAGAAGAAGCGGACTAGCA+AGG - chr7_4:62114677-62114696 Msa1169190:CDS 45.0%
GACTAGCAAGGTTCAGGAAT+TGG - chr7_4:62114689-62114708 Msa1169190:CDS 45.0%
AAGGTCCGAAAACTGTTGAC+GGG + chr7_4:62114859-62114878 None:intergenic 45.0%
TGCATGGCAATCTGAACTTG+AGG - chr7_4:62114938-62114957 Msa1169190:CDS 45.0%
TGTCCAAAAGCAGCACTCAA+TGG - chr7_4:62114962-62114981 Msa1169190:CDS 45.0%
! CTCAATGGATTCATCTGCTC+TGG - chr7_4:62114977-62114996 Msa1169190:CDS 45.0%
GTCTGATCATGCTCAGATTC+AGG - chr7_4:62115085-62115104 Msa1169190:CDS 45.0%
ATGCTCAGATTCAGGACTTG+AGG - chr7_4:62115093-62115112 Msa1169190:CDS 45.0%
TCAGATTCAGGACTTGAGGA+TGG - chr7_4:62115097-62115116 Msa1169190:CDS 45.0%
AATCCTTGGAGGAACTTGTG+AGG - chr7_4:62115336-62115355 Msa1169190:CDS 45.0%
TTTCCTCACAAGTTCCTCCA+AGG + chr7_4:62115342-62115361 None:intergenic 45.0%
CTGAGAAAGTCCCTTTCCAT+TGG + chr7_4:62115381-62115400 None:intergenic 45.0%
CAATGGAAAGGGACTTTCTC+AGG - chr7_4:62115379-62115398 Msa1169190:CDS 45.0%
GGGACTTTCTCAGGAAAATG+AGG - chr7_4:62115388-62115407 Msa1169190:CDS 45.0%
AGATTTGGCAGAGATAAGCG+CGG + chr7_4:62115432-62115451 None:intergenic 45.0%
TGCCGAGATAAGATACCAAG+AGG - chr7_4:62115484-62115503 Msa1169190:CDS 45.0%
! TGCTCTGGATGTATTCCTCT+TGG + chr7_4:62115502-62115521 None:intergenic 45.0%
ATCAGAATCCAGTGAGAGAG+AGG - chr7_4:62115565-62115584 Msa1169190:CDS 45.0%
TAATTCAGCCTCTCTCTCAC+TGG + chr7_4:62115576-62115595 None:intergenic 45.0%
GAGAGAGGCTGAATTATACG+AGG - chr7_4:62115580-62115599 Msa1169190:CDS 45.0%
AGAGCTAAAAGCAAGCCTGA+TGG - chr7_4:62115631-62115650 Msa1169190:CDS 45.0%
TCAATTGCTGAGTTTGTCGG+CGG - chr7_4:62115664-62115683 Msa1169190:intron 45.0%
TGGATACTGATGTTGCAGAG+TGG - chr7_4:62115768-62115787 Msa1169190:intron 45.0%
TTGAGTCGGTTGAAACAGCA+AGG - chr7_4:62115903-62115922 Msa1169190:intron 45.0%
TGAGTCGGTTGAAACAGCAA+GGG - chr7_4:62115904-62115923 Msa1169190:intron 45.0%
TCAGGCTGCAAATTCAGAGT+TGG - chr7_4:62116027-62116046 Msa1169190:intron 45.0%
CAGAGTTGGAAGCCGAATTA+AGG - chr7_4:62116041-62116060 Msa1169190:intron 45.0%
TGATCAGTGGAGAAAAGCAG+CGG - chr7_4:62116081-62116100 Msa1169190:intron 45.0%
CTTTCTACCACCGGAAACAA+TGG - chr7_4:62116121-62116140 Msa1169190:intron 45.0%
!! AGAAGATTGGAGTGTTGTGG+AGG - chr7_4:62116272-62116291 Msa1169190:intron 45.0%
GCCGAGTTAGAACCAGAGTT+TGG + chr7_4:62113891-62113910 None:intergenic 50.0%
!! TCTTATGGGGTTTGGTGAGG+AGG + chr7_4:62113916-62113935 None:intergenic 50.0%
GTCCGAAAGTAAACGAACGC+AGG - chr7_4:62113955-62113974 Msa1169190:three_prime_UTR 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG - chr7_4:62114243-62114262 Msa1169190:CDS 50.0%
GAATCGAACCTGAGACCTTG+CGG + chr7_4:62114280-62114299 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - chr7_4:62114284-62114303 Msa1169190:CDS 50.0%
CTTGCCTTATGGAGCTATCG+CGG - chr7_4:62114438-62114457 Msa1169190:CDS 50.0%
TTAGCCGCGATAGCTCCATA+AGG + chr7_4:62114445-62114464 None:intergenic 50.0%
ACTGTCCCTGTCAAAAGAGC+TGG - chr7_4:62114827-62114846 Msa1169190:CDS 50.0%
AAGTCGTGCTTCTTCGGAAG+CGG + chr7_4:62114883-62114902 None:intergenic 50.0%
GACAGTGGAGACACTCCAAT+CGG - chr7_4:62115244-62115263 Msa1169190:CDS 50.0%
AGTTTGTCGGCGGAGAATGA+GGG - chr7_4:62115674-62115693 Msa1169190:intron 50.0%
CACTGAAGAGGCTGTTGAGT+CGG - chr7_4:62115889-62115908 Msa1169190:intron 50.0%
CTGAGCAGCATCTAGCTGTT+CGG + chr7_4:62116011-62116030 None:intergenic 50.0%
GCAGTTCGAGGAGTTGTAGC+AGG + chr7_4:62113852-62113871 None:intergenic 55.0%
TTCAACTGGCGAGCAGTTCG+AGG + chr7_4:62113864-62113883 None:intergenic 55.0%
!! TATGGGGTTTGGTGAGGAGG+AGG + chr7_4:62113913-62113932 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG - chr7_4:62114221-62114240 Msa1169190:CDS 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - chr7_4:62114230-62114249 Msa1169190:CDS 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - chr7_4:62114235-62114254 Msa1169190:CDS 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - chr7_4:62114236-62114255 Msa1169190:CDS 55.0%
AGACCCAAGCCAATACCACC+AGG + chr7_4:62114242-62114261 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG - chr7_4:62114242-62114261 Msa1169190:CDS 55.0%
!! GAAGCGGACTAGCAAGGTTC+AGG - chr7_4:62114683-62114702 Msa1169190:CDS 55.0%
GTGCTTCTTCGGAAGCGGAA+AGG + chr7_4:62114878-62114897 None:intergenic 55.0%
CTCAGGATCGAGATCGTGCA+TGG - chr7_4:62114922-62114941 Msa1169190:CDS 55.0%
GTGGAGACACTCCAATCGGA+TGG - chr7_4:62115248-62115267 Msa1169190:CDS 55.0%
GAGTTTGTCGGCGGAGAATG+AGG - chr7_4:62115673-62115692 Msa1169190:intron 55.0%
GTTTGTCGGCGGAGAATGAG+GGG - chr7_4:62115675-62115694 Msa1169190:intron 55.0%
AACAGCAAGGGCTGCAGAGA+AGG - chr7_4:62115916-62115935 Msa1169190:intron 55.0%
CGAACAGCTAGATGCTGCTC+AGG - chr7_4:62116009-62116028 Msa1169190:intron 55.0%
TCAGTGGAGAAAAGCAGCGG+AGG - chr7_4:62116084-62116103 Msa1169190:intron 55.0%
ACCACCAGGCCAACCCAAGT+GGG + chr7_4:62114228-62114247 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG + chr7_4:62114229-62114248 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG + chr7_4:62114277-62114296 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr7_4:62114224-62114243 Msa1169190:CDS 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG - chr7_4:62114262-62114281 Msa1169190:CDS 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG - chr7_4:62114269-62114288 Msa1169190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62113804 62116542 62113804 ID=Msa1169190;Name=Msa1169190
chr7_4 mRNA 62113804 62116542 62113804 ID=Msa1169190-mRNA-1;Parent=Msa1169190;Name=Msa1169190-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.5|1|1|1|2|233|608
chr7_4 exon 62113804 62115665 62113804 ID=Msa1169190-mRNA-1:exon:19693;Parent=Msa1169190-mRNA-1
chr7_4 exon 62116345 62116542 62116345 ID=Msa1169190-mRNA-1:exon:19692;Parent=Msa1169190-mRNA-1
chr7_4 CDS 62116345 62116542 62116345 ID=Msa1169190-mRNA-1:cds;Parent=Msa1169190-mRNA-1
chr7_4 CDS 62114037 62115665 62114037 ID=Msa1169190-mRNA-1:cds;Parent=Msa1169190-mRNA-1
chr7_4 three_prime_UTR 62113804 62114036 62113804 ID=Msa1169190-mRNA-1:three_prime_utr;Parent=Msa1169190-mRNA-1
Gene Sequence

>Msa1169190

ATGGCTGGCAGATCCAATGCTCCAGAAATGTCCCAAAGGAAATCACCTGCTACAACTCCTCGAACTGCTCGCCAGTTGAAGACACCAAACTCTGGTTCTAACTCGGCCTCCTCCTCACCAAACCCCATAAGAAAGATACCAAAAGACATGAGTCCGAAAGTAAACGAACGCAGGTTATCACACAGTCCAATATCTGAGAAGAAGCGGACTAGCAAGGTTCAGGAATTGGAATCACAGATTGCTAAGCTTCAAGAAGATCTGAAGAGTGCTAAGGATCAACTTAACTCATCGGAGTCATGGAAGACAAAAGTTCAAGAGGAGGCTGAAGAAGCAAAGAAGCAGATACTGTCCCTGTCAAAAGAGCTGGAAGAATCCCGTCAACAGTTTTCGGACCTTTCCGCTTCCGAAGAAGCACGACTTCAAGAACTCAGTAAAATATCTCAGGATCGAGATCGTGCATGGCAATCTGAACTTGAGGCTGTCCAAAAGCAGCACTCAATGGATTCATCTGCTCTGGTGTCTGCCATGAATGAAATACATAAATTGAAAAGTCAGCTTGAAAGAGCAAGCGAGTCCGAATTTTCTCAGACTAACAACGCAGAGTCTGATCATGCTCAGATTCAGGACTTGAGGATGGATCTTAGTGAAGCTATCTCTGTTATGGAAAAACTAAGAAATGAGGCAAGTAATTGCAAAGAATCCGAATCACGAGCTTTAGAAGTAATTGGCAAAATGCAAATGCAATTGGAAACAGTAAATAAGACAGTGGAGACACTCCAATCGGATGGTATAAAAGCAACTGAAGCTTACAAGTCCTTAGCTTTTGAGTTGGAACAATCAAAATCTCAAGCAAAATCCTTGGAGGAACTTGTGAGGAAACTTGACACTGATTCAACCAATGGAAAGGGACTTTCTCAGGAAAATGAGGAGATAAATGGGCTCAAAGCCGCGCTTATCTCTGCCAAATCTGAAGTAGAGCAGTTGAAATCTGCATTGGATGTTGCCGAGATAAGATACCAAGAGGAATACATCCAGAGCACATTGCAGATTAGAAGTGCTTACGAACAACTGGAACGTACAAAATCAGAATCCAGTGAGAGAGAGGCTGAATTATACGAGGAATTGAGGAAAGCTATAGCTGGTATTGAAGAGCTAAAAGCAAGCCTGATGGAAAAGGAATCTCAATTGCTGAGTTTGTCGGCGGAGAATGAGGGGTGCAATTCCAGTATCAATGAAAAGCGATCTACTGACAGGGAATCTGAACTTGCTGCAGAACTCAAAAAAATGGATACTGATGTTGCAGAGTGGAAAGCAAAATTATTAGATAGAGAGTCCGAGTTGAAAAAAGTAACTGAAGAAAACAGTATCCTCAAGATGGAGATAAAGGAGTTGGAGCAGAATAAAATCACTGAAGAGGCTGTTGAGTCGGTTGAAACAGCAAGGGCTGCAGAGAAGGAAGCTTTGACAAAACTTAGCTATGTAATGGAAGAAGCGGATAAAAGTAACAGAAGAGTGGCTCGTGTAACCGAACAGCTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAATTAAGGAGATTGAAAGTTCAGTCTGATCAGTGGAGAAAAGCAGCGGAGGCAGCTGCATCTATACTTTCTACCACCGGAAACAATGGAAAATGTGTAGGGAAAAACGGCGCACTTGACAGTAGTTTCAACTCTATTTCAAGCAAGACAATGAATTCACCTTATTTAGAAGACACAGATGATGAGTCTCCAAAGAAGAAAAACAAAAACATGCTGAAGAAGATTGGAGTGTTGTGGAGGAAGAATCATCATTAA

Protein sequence

>Msa1169190

MAGRSNAPEMSQRKSPATTPRTARQLKTPNSGSNSASSSPNPIRKIPKDMSPKVNERRLSHSPISEKKRTSKVQELESQIAKLQEDLKSAKDQLNSSESWKTKVQEEAEEAKKQILSLSKELEESRQQFSDLSASEEARLQELSKISQDRDRAWQSELEAVQKQHSMDSSALVSAMNEIHKLKSQLERASESEFSQTNNAESDHAQIQDLRMDLSEAISVMEKLRNEASNCKESESRALEVIGKMQMQLETVNKTVETLQSDGIKATEAYKSLAFELEQSKSQAKSLEELVRKLDTDSTNGKGLSQENEEINGLKAALISAKSEVEQLKSALDVAEIRYQEEYIQSTLQIRSAYEQLERTKSESSEREAELYEELRKAIAGIEELKASLMEKESQLLSLSAENEGCNSSINEKRSTDRESELAAELKKMDTDVAEWKAKLLDRESELKKVTEENSILKMEIKELEQNKITEEAVESVETARAAEKEALTKLSYVMEEADKSNRRVARVTEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASILSTTGNNGKCVGKNGALDSSFNSISSKTMNSPYLEDTDDESPKKKNKNMLKKIGVLWRKNHH*