AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077910 MtrunA17_Chr1g0188001 96.800 125 4 0 1 125 1 125 1.88e-87 249
Msa0077910 MtrunA17_Chr2g0299541 59.048 105 36 1 1 98 1 105 1.20e-39 129
Msa0077910 MtrunA17_Chr5g0400271 58.095 105 37 1 1 98 1 105 2.43e-38 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077910 AT4G34620.1 65.854 82 28 0 1 82 1 82 2.63e-38 125
Msa0077910 AT5G56940.1 53.846 104 41 1 1 97 1 104 3.37e-38 126

Find 50 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACAACAACCCGGTAAAA+TGG 0.190138 1_2:+54981049 None:intergenic
TGGATGGCTGCTCTTCGTTC+GGG 0.277399 1_2:+54979357 None:intergenic
TTGGATGGCTGCTCTTCGTT+CGG 0.292007 1_2:+54979356 None:intergenic
ACCATCAACTTCTTTGTCAT+TGG 0.341893 1_2:+54979337 None:intergenic
CGGCAACTGCATTCGCATAA+AGG 0.342787 1_2:-54981287 Msa0077910:five_prime_UTR
GGTTACTACAATCCTATTGC+AGG 0.364917 1_2:-54980983 Msa0077910:intron
TCTTCGTTCGGGGTATCAAC+AGG 0.369294 1_2:+54979368 None:intergenic
ATTGATGTTGAACCTGCAAT+AGG 0.387393 1_2:+54980971 None:intergenic
AGAAAAGATATAAAGATAAG+AGG 0.394997 1_2:-54981322 Msa0077910:five_prime_UTR
AGATATAAAGATAAGAGGAT+TGG 0.404737 1_2:-54981317 Msa0077910:five_prime_UTR
GGGAATAACAGCCATATGTT+TGG 0.419842 1_2:-54979174 Msa0077910:three_prime_UTR
TAGATAGAGAGAGCAGGTTC+AGG 0.433335 1_2:-54981258 Msa0077910:intron
TCCAATGACAAAGAAGTTGA+TGG 0.440759 1_2:-54979338 Msa0077910:intron
GATATAAAGATAAGAGGATT+GGG 0.445476 1_2:-54981316 Msa0077910:five_prime_UTR
TTTAGGTATTGGCTTTCTGT+TGG 0.451329 1_2:-54979476 Msa0077910:intron
GGCAACTGCATTCGCATAAA+GGG 0.456149 1_2:-54981286 Msa0077910:five_prime_UTR
AAAATAAATAAGTAAACAAC+AGG 0.456386 1_2:+54978944 None:intergenic
TTACAACAACCCGGTAAAAT+GGG 0.462639 1_2:+54981050 None:intergenic
AATGGGGTAATAAAAGAGTT+CGG 0.463730 1_2:+54981363 None:intergenic
AAACGGAAAGGTGGACTGTC+TGG 0.470726 1_2:-54979398 Msa0077910:CDS
ACCCACCTTCTCCAAACATA+TGG 0.476278 1_2:+54979163 None:intergenic
TCAACTTCTTTGTCATTGGA+TGG 0.482393 1_2:+54979341 None:intergenic
GTCAAGCATGCATACATGAC+AGG 0.500729 1_2:+54979041 None:intergenic
AGCCATATGTTTGGAGAAGG+TGG 0.501549 1_2:-54979165 Msa0077910:three_prime_UTR
AGGCAGGTTTACAAATGAAA+CGG 0.502953 1_2:-54979415 Msa0077910:CDS
GCAGAAGCTGTACTTTCTAT+CGG 0.514830 1_2:-54979214 Msa0077910:CDS
AGTATTCGATTAGCGAGACT+TGG 0.516156 1_2:-54981085 Msa0077910:CDS
GGCAAGAACATCGAAGTTGT+TGG 0.525645 1_2:-54981004 Msa0077910:CDS
ATAAAGATAAGAGGATTGGG+AGG 0.536090 1_2:-54981313 Msa0077910:five_prime_UTR
AGACTCTCCACAGGTTCTGA+AGG 0.549004 1_2:+54979446 None:intergenic
GATAGATAGATAGAGAGAGC+AGG 0.558251 1_2:-54981264 Msa0077910:five_prime_UTR
GCCATATGTTTGGAGAAGGT+GGG 0.570284 1_2:-54979164 Msa0077910:three_prime_UTR
TTGTTAACTGCTTGATCATG+AGG 0.574436 1_2:-54978985 Msa0077910:three_prime_UTR
TGCTCAACCTTCAGAACCTG+TGG 0.580737 1_2:-54979453 Msa0077910:CDS
AACAGCCATATGTTTGGAGA+AGG 0.582032 1_2:-54979168 Msa0077910:three_prime_UTR
CGGCTTACAAGTTTAACTGA+GGG 0.587865 1_2:-54979194 Msa0077910:exon
ATAAGAGGATTGGGAGGGAA+CGG 0.587928 1_2:-54981307 Msa0077910:five_prime_UTR
ATGCATACATGACAGGGTAG+AGG 0.589089 1_2:+54979048 None:intergenic
TTGAATAAAAGACTCTCCAC+AGG 0.595461 1_2:+54979437 None:intergenic
GGATGGCTGCTCTTCGTTCG+GGG 0.597237 1_2:+54979358 None:intergenic
CTTCGTTCGGGGTATCAACA+GGG 0.597733 1_2:+54979369 None:intergenic
AAACAGTTGACGATTTGCAA+TGG 0.600455 1_2:+54979121 None:intergenic
CAGTTGACGATTTGCAATGG+AGG 0.604254 1_2:+54979124 None:intergenic
GATAGCAAATGTGCAAGAGA+CGG 0.614709 1_2:-54981025 Msa0077910:CDS
TGCTATCAGTTACAACAACC+CGG 0.633843 1_2:+54981041 None:intergenic
TAAAGATAAGAGGATTGGGA+GGG 0.637738 1_2:-54981312 Msa0077910:five_prime_UTR
TCGGCTTACAAGTTTAACTG+AGG 0.642616 1_2:-54979195 Msa0077910:exon
TTACAAATGAAACGGAAAGG+TGG 0.647965 1_2:-54979407 Msa0077910:CDS
GGTTTACAAATGAAACGGAA+AGG 0.664042 1_2:-54979410 Msa0077910:CDS
TCAAGCATGCATACATGACA+GGG 0.664740 1_2:+54979042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTTTTAAAATTA+CGG - chr1_2:54980110-54980129 Msa0077910:intron 0.0%
!!! TTTAAAATGAATTTTTAAGT+GGG + chr1_2:54978905-54978924 None:intergenic 10.0%
!!! TTTTAAAATGAATTTTTAAG+TGG + chr1_2:54978906-54978925 None:intergenic 10.0%
!!! AAAATTGCATTTTTATTATT+TGG - chr1_2:54979408-54979427 Msa0077910:CDS 10.0%
!!! TATATGCAATATTTTATTTT+TGG + chr1_2:54979863-54979882 None:intergenic 10.0%
!! AAAATTTCAGAAAATTATTA+TGG + chr1_2:54980018-54980037 None:intergenic 10.0%
!!! TTTCATTTACATTTTATTTT+AGG - chr1_2:54981051-54981070 Msa0077910:CDS 10.0%
!!! TGTCTTATCTATTTTTAAAT+GGG + chr1_2:54978952-54978971 None:intergenic 15.0%
!!! AAAGAATTTTTCTTTCATTT+GGG - chr1_2:54979439-54979458 Msa0077910:CDS 15.0%
!! AAAGTAAATCAAGTTAAAAA+AGG + chr1_2:54980636-54980655 None:intergenic 15.0%
!! AAAATAAATAAGTAAACAAC+AGG + chr1_2:54981354-54981373 None:intergenic 15.0%
!!! GTCTTATCTATTTTTAAATG+GGG + chr1_2:54978951-54978970 None:intergenic 20.0%
!!! CTGTCTTATCTATTTTTAAA+TGG + chr1_2:54978953-54978972 None:intergenic 20.0%
!! AGAAAAGATATAAAGATAAG+AGG - chr1_2:54978973-54978992 Msa0077910:three_prime_UTR 20.0%
!! AATATCATAATTCAACAACA+TGG + chr1_2:54979157-54979176 None:intergenic 20.0%
!! AACATATAGAATTAGAGATA+AGG + chr1_2:54979357-54979376 None:intergenic 20.0%
!! CAAATGAAAGAAAAATTCTT+TGG + chr1_2:54979440-54979459 None:intergenic 20.0%
!!! CAAAGAATTTTTCTTTCATT+TGG - chr1_2:54979438-54979457 Msa0077910:CDS 20.0%
!!! TTAAAGCACAAAATTGTTTT+GGG - chr1_2:54979485-54979504 Msa0077910:intron 20.0%
!! TAATTGATATTTGCATATGT+AGG - chr1_2:54979696-54979715 Msa0077910:intron 20.0%
!! TTATGAATATTGCATATAGA+AGG - chr1_2:54979830-54979849 Msa0077910:intron 20.0%
!! TATGAATATTGCATATAGAA+GGG - chr1_2:54979831-54979850 Msa0077910:intron 20.0%
!! ATGATTTACAATTACATACA+TGG - chr1_2:54980144-54980163 Msa0077910:intron 20.0%
!! TGTTTATAAATGATAAAACC+AGG + chr1_2:54980437-54980456 None:intergenic 20.0%
!!! GGTTTTATCATTTATAAACA+CGG - chr1_2:54980437-54980456 Msa0077910:intron 20.0%
!!! CATTTTTAATCCTTTTACTA+TGG + chr1_2:54980517-54980536 None:intergenic 20.0%
!! AATCAAGTTAAAAAAGGATT+AGG + chr1_2:54980630-54980649 None:intergenic 20.0%
!!! TAGTTATTTGTACACAATTT+TGG - chr1_2:54980740-54980759 Msa0077910:intron 20.0%
!!! AGTTATTTGTACACAATTTT+GGG - chr1_2:54980741-54980760 Msa0077910:intron 20.0%
!!! ATGAATTTTTAAGTGGGATA+AGG + chr1_2:54978899-54978918 None:intergenic 25.0%
! AGATATAAAGATAAGAGGAT+TGG - chr1_2:54978978-54978997 Msa0077910:three_prime_UTR 25.0%
! GATATAAAGATAAGAGGATT+GGG - chr1_2:54978979-54978998 Msa0077910:three_prime_UTR 25.0%
!! TCTCTTTTTCTTCAATTTCA+AGG - chr1_2:54979069-54979088 Msa0077910:three_prime_UTR 25.0%
!! ATATTATTACTGTTACTTGC+AGG - chr1_2:54979172-54979191 Msa0077910:three_prime_UTR 25.0%
! TTTCATTTGGGTATACTTTA+TGG - chr1_2:54979451-54979470 Msa0077910:CDS 25.0%
!! CTTAAAGCACAAAATTGTTT+TGG - chr1_2:54979484-54979503 Msa0077910:intron 25.0%
! AAGAGAGAGATAAAGATAAA+CGG - chr1_2:54979587-54979606 Msa0077910:intron 25.0%
! GATGTTCAAATAACATAACT+CGG - chr1_2:54979628-54979647 Msa0077910:CDS 25.0%
! ATGTTCAAATAACATAACTC+GGG - chr1_2:54979629-54979648 Msa0077910:CDS 25.0%
! AGCATACAATAATGTTCTAA+AGG + chr1_2:54979970-54979989 None:intergenic 25.0%
! TTGTATGCTTAATTTCACTT+TGG - chr1_2:54979981-54980000 Msa0077910:intron 25.0%
! GAAAATTATTATGGCAAGTA+AGG + chr1_2:54980009-54980028 None:intergenic 25.0%
! TTACAATTACATACATGGTA+TGG - chr1_2:54980149-54980168 Msa0077910:intron 25.0%
! AACGAACTGATGTATTTAAA+CGG - chr1_2:54980301-54980320 Msa0077910:intron 25.0%
!! TTCTACTTTGTAAAGTATCA+TGG - chr1_2:54980354-54980373 Msa0077910:intron 25.0%
! TTTATCATTTATAAACACGG+AGG - chr1_2:54980440-54980459 Msa0077910:intron 25.0%
! TTATCATTTATAAACACGGA+GGG - chr1_2:54980441-54980460 Msa0077910:intron 25.0%
!! ATCCTTTTACTATGGAATTA+TGG + chr1_2:54980509-54980528 None:intergenic 25.0%
!! GTTATTTGTACACAATTTTG+GGG - chr1_2:54980742-54980761 Msa0077910:intron 25.0%
AATGGGGTAATAAAAGAGTT+CGG + chr1_2:54978935-54978954 None:intergenic 30.0%
! TAAACTGTGTTTCAGTGTTT+TGG + chr1_2:54979116-54979135 None:intergenic 30.0%
GAGATAAAGATAAACGGATA+TGG - chr1_2:54979593-54979612 Msa0077910:intron 30.0%
! CATTTTTGCTAATGAGTAGT+GGG - chr1_2:54979672-54979691 Msa0077910:intron 30.0%
! ATATGTAGGACTTGTTTGAA+AGG - chr1_2:54979710-54979729 Msa0077910:intron 30.0%
!! TGTTGTGAGTTTCTAGATTT+TGG - chr1_2:54979745-54979764 Msa0077910:intron 30.0%
!! GTTGTGAGTTTCTAGATTTT+GGG - chr1_2:54979746-54979765 Msa0077910:intron 30.0%
!!! TTTTTTGTTCCTAGCTCTAA+GGG + chr1_2:54979805-54979824 None:intergenic 30.0%
AAATGACCATAATGAAACAC+AGG - chr1_2:54979907-54979926 Msa0077910:intron 30.0%
TCAACTTGAAATGAAAACAC+CGG + chr1_2:54980059-54980078 None:intergenic 30.0%
ATTAAATGGCAGATTGACAT+AGG + chr1_2:54980097-54980116 None:intergenic 30.0%
! GAATTTTCTGTGTTTACGAT+AGG - chr1_2:54980171-54980190 Msa0077910:intron 30.0%
CTTATCTGTTTGCATCTTAA+TGG - chr1_2:54980227-54980246 Msa0077910:intron 30.0%
TAATCAATAACCCAAACTGT+TGG - chr1_2:54980483-54980502 Msa0077910:intron 30.0%
GCAATTCACAGTAACAAATA+GGG + chr1_2:54980557-54980576 None:intergenic 30.0%
TGCAATTCACAGTAACAAAT+AGG + chr1_2:54980558-54980577 None:intergenic 30.0%
AATTGCAATGTATACCAGTT+TGG - chr1_2:54980571-54980590 Msa0077910:intron 30.0%
ATTGCAATGTATACCAGTTT+GGG - chr1_2:54980572-54980591 Msa0077910:intron 30.0%
GGGAAATTAGTGATAATTGT+GGG - chr1_2:54980762-54980781 Msa0077910:intron 30.0%
GGAAATTAGTGATAATTGTG+GGG - chr1_2:54980763-54980782 Msa0077910:intron 30.0%
AGATTCACATTCAAAAGTGA+AGG + chr1_2:54980995-54981014 None:intergenic 30.0%
ATAAAGATAAGAGGATTGGG+AGG - chr1_2:54978982-54979001 Msa0077910:three_prime_UTR 35.0%
TAAAGATAAGAGGATTGGGA+GGG - chr1_2:54978983-54979002 Msa0077910:three_prime_UTR 35.0%
! TGTTACTTGCAGGTGAAAAA+TGG - chr1_2:54979182-54979201 Msa0077910:exon 35.0%
TTACAACAACCCGGTAAAAT+GGG + chr1_2:54979248-54979267 None:intergenic 35.0%
ATTGATGTTGAACCTGCAAT+AGG + chr1_2:54979327-54979346 None:intergenic 35.0%
CATTTGGGTATACTTTATGG+TGG - chr1_2:54979454-54979473 Msa0077910:CDS 35.0%
! GGGATAAACACGTTTTCTTA+TGG - chr1_2:54979649-54979668 Msa0077910:intron 35.0%
! GCATTTTTGCTAATGAGTAG+TGG - chr1_2:54979671-54979690 Msa0077910:intron 35.0%
!!! GTTTTTTGTTCCTAGCTCTA+AGG + chr1_2:54979806-54979825 None:intergenic 35.0%
ACCATAATGAAACACAGGTT+TGG - chr1_2:54979912-54979931 Msa0077910:intron 35.0%
TCCAAACCTGTGTTTCATTA+TGG + chr1_2:54979916-54979935 None:intergenic 35.0%
! TTGTTCCGTGTAAGTTTTTC+CGG - chr1_2:54980037-54980056 Msa0077910:intron 35.0%
AAACACCGGAAAAACTTACA+CGG + chr1_2:54980045-54980064 None:intergenic 35.0%
CTGATTTCTGTTCTCAGTAT+GGG - chr1_2:54980203-54980222 Msa0077910:intron 35.0%
GGCCATAATTCCATAGTAAA+AGG - chr1_2:54980504-54980523 Msa0077910:intron 35.0%
GGGGAAATTAGTGATAATTG+TGG - chr1_2:54980761-54980780 Msa0077910:intron 35.0%
CAATACCTAAAGAACATGAG+GGG + chr1_2:54980810-54980829 None:intergenic 35.0%
CCAATACCTAAAGAACATGA+GGG + chr1_2:54980811-54980830 None:intergenic 35.0%
!! TTTAGGTATTGGCTTTCTGT+TGG - chr1_2:54980819-54980838 Msa0077910:intron 35.0%
TTGAATAAAAGACTCTCCAC+AGG + chr1_2:54980861-54980880 None:intergenic 35.0%
! TGTGGAGAGTCTTTTATTCA+AGG - chr1_2:54980860-54980879 Msa0077910:intron 35.0%
AGGCAGGTTTACAAATGAAA+CGG - chr1_2:54980880-54980899 Msa0077910:intron 35.0%
GGTTTACAAATGAAACGGAA+AGG - chr1_2:54980885-54980904 Msa0077910:intron 35.0%
TTACAAATGAAACGGAAAGG+TGG - chr1_2:54980888-54980907 Msa0077910:intron 35.0%
TCAACTTCTTTGTCATTGGA+TGG + chr1_2:54980957-54980976 None:intergenic 35.0%
TCCAATGACAAAGAAGTTGA+TGG - chr1_2:54980957-54980976 Msa0077910:intron 35.0%
ACCATCAACTTCTTTGTCAT+TGG + chr1_2:54980961-54980980 None:intergenic 35.0%
ATCTCGTTTAGCATTGTTTC+TGG - chr1_2:54981011-54981030 Msa0077910:CDS 35.0%
! TCTCGTTTAGCATTGTTTCT+GGG - chr1_2:54981012-54981031 Msa0077910:CDS 35.0%
AAACAGTTGACGATTTGCAA+TGG + chr1_2:54981177-54981196 None:intergenic 35.0%
TTGTTAACTGCTTGATCATG+AGG - chr1_2:54981310-54981329 Msa0077910:five_prime_UTR 35.0%
GATAGATAGATAGAGAGAGC+AGG - chr1_2:54979031-54979050 Msa0077910:three_prime_UTR 40.0%
TACTTGCAGGTGAAAAATGG+TGG - chr1_2:54979185-54979204 Msa0077910:exon 40.0%
AGTATTCGATTAGCGAGACT+TGG - chr1_2:54979210-54979229 Msa0077910:CDS 40.0%
GTTACAACAACCCGGTAAAA+TGG + chr1_2:54979249-54979268 None:intergenic 40.0%
TGCTATCAGTTACAACAACC+CGG + chr1_2:54979257-54979276 None:intergenic 40.0%
GATAGCAAATGTGCAAGAGA+CGG - chr1_2:54979270-54979289 Msa0077910:intron 40.0%
GGTTACTACAATCCTATTGC+AGG - chr1_2:54979312-54979331 Msa0077910:intron 40.0%
TTTAGCTATCCCTTAGAGCT+AGG - chr1_2:54979793-54979812 Msa0077910:intron 40.0%
CGATCGTTATCTCTTGTTAG+TGG - chr1_2:54979940-54979959 Msa0077910:intron 40.0%
GGCAGATTGACATAGGTTAT+AGG + chr1_2:54980090-54980109 None:intergenic 40.0%
CCATACTGAGAACAGAAATC+AGG + chr1_2:54980205-54980224 None:intergenic 40.0%
CCTGATTTCTGTTCTCAGTA+TGG - chr1_2:54980202-54980221 Msa0077910:intron 40.0%
!! AAACGGATTGAAGTCACTTG+AGG - chr1_2:54980318-54980337 Msa0077910:intron 40.0%
CTAGAAAGTGACCTGATAGA+GGG - chr1_2:54980410-54980429 Msa0077910:intron 40.0%
TAGAAAGTGACCTGATAGAG+GGG - chr1_2:54980411-54980430 Msa0077910:intron 40.0%
GGAATTATGGCCAACAGTTT+GGG + chr1_2:54980496-54980515 None:intergenic 40.0%
TGGAATTATGGCCAACAGTT+TGG + chr1_2:54980497-54980516 None:intergenic 40.0%
! TATACCAGTTTGGGATGAGA+AGG - chr1_2:54980581-54980600 Msa0077910:intron 40.0%
GTGATAATTGTGGGGATCAT+TGG - chr1_2:54980771-54980790 Msa0077910:intron 40.0%
CCCTCATGTTCTTTAGGTAT+TGG - chr1_2:54980808-54980827 Msa0077910:intron 40.0%
GCCAATACCTAAAGAACATG+AGG + chr1_2:54980812-54980831 None:intergenic 40.0%
! GAGAGTCTTTTATTCAAGGC+AGG - chr1_2:54980864-54980883 Msa0077910:intron 40.0%
GCAGAAGCTGTACTTTCTAT+CGG - chr1_2:54981081-54981100 Msa0077910:CDS 40.0%
TCGGCTTACAAGTTTAACTG+AGG - chr1_2:54981100-54981119 Msa0077910:exon 40.0%
CGGCTTACAAGTTTAACTGA+GGG - chr1_2:54981101-54981120 Msa0077910:exon 40.0%
GGGAATAACAGCCATATGTT+TGG - chr1_2:54981121-54981140 Msa0077910:intron 40.0%
AACAGCCATATGTTTGGAGA+AGG - chr1_2:54981127-54981146 Msa0077910:intron 40.0%
TCAAGCATGCATACATGACA+GGG + chr1_2:54981256-54981275 None:intergenic 40.0%
ATAAGAGGATTGGGAGGGAA+CGG - chr1_2:54978988-54979007 Msa0077910:three_prime_UTR 45.0%
GGCAACTGCATTCGCATAAA+GGG - chr1_2:54979009-54979028 Msa0077910:three_prime_UTR 45.0%
TAGATAGAGAGAGCAGGTTC+AGG - chr1_2:54979037-54979056 Msa0077910:three_prime_UTR 45.0%
! GCACACACAACCCATTTTAC+CGG - chr1_2:54979235-54979254 Msa0077910:intron 45.0%
! CACACACAACCCATTTTACC+GGG - chr1_2:54979236-54979255 Msa0077910:intron 45.0%
GGCAAGAACATCGAAGTTGT+TGG - chr1_2:54979291-54979310 Msa0077910:intron 45.0%
GCTAGAAAGTGACCTGATAG+AGG - chr1_2:54980409-54980428 Msa0077910:intron 45.0%
AACATGAGGGGAGGTTAAGA+TGG + chr1_2:54980798-54980817 None:intergenic 45.0%
AACCTCCCCTCATGTTCTTT+AGG - chr1_2:54980802-54980821 Msa0077910:intron 45.0%
TACCTAAAGAACATGAGGGG+AGG + chr1_2:54980807-54980826 None:intergenic 45.0%
AGCCATATGTTTGGAGAAGG+TGG - chr1_2:54981130-54981149 Msa0077910:intron 45.0%
GCCATATGTTTGGAGAAGGT+GGG - chr1_2:54981131-54981150 Msa0077910:intron 45.0%
ACCCACCTTCTCCAAACATA+TGG + chr1_2:54981135-54981154 None:intergenic 45.0%
CAGTTGACGATTTGCAATGG+AGG + chr1_2:54981174-54981193 None:intergenic 45.0%
ATGCATACATGACAGGGTAG+AGG + chr1_2:54981250-54981269 None:intergenic 45.0%
GTCAAGCATGCATACATGAC+AGG + chr1_2:54981257-54981276 None:intergenic 45.0%
!!! GTAATTTTAAAAAAATTAAA+TGG + chr1_2:54980111-54980130 None:intergenic 5.0%
CGGCAACTGCATTCGCATAA+AGG - chr1_2:54979008-54979027 Msa0077910:three_prime_UTR 50.0%
! AGAGAGAGCAGGTTCAGGTT+CGG - chr1_2:54979042-54979061 Msa0077910:three_prime_UTR 50.0%
TAAAACCAGGCCCCTCTATC+AGG + chr1_2:54980424-54980443 None:intergenic 50.0%
! ACCAGTTTGGGATGAGAAGG+AGG - chr1_2:54980584-54980603 Msa0077910:intron 50.0%
! CCAGTTTGGGATGAGAAGGA+GGG - chr1_2:54980585-54980604 Msa0077910:intron 50.0%
TGCTCAACCTTCAGAACCTG+TGG - chr1_2:54980842-54980861 Msa0077910:intron 50.0%
! AGACTCTCCACAGGTTCTGA+AGG + chr1_2:54980852-54980871 None:intergenic 50.0%
!! AAACGGAAAGGTGGACTGTC+TGG - chr1_2:54980897-54980916 Msa0077910:intron 50.0%
! CTTCGTTCGGGGTATCAACA+GGG + chr1_2:54980929-54980948 None:intergenic 50.0%
! TCTTCGTTCGGGGTATCAAC+AGG + chr1_2:54980930-54980949 None:intergenic 50.0%
TTGGATGGCTGCTCTTCGTT+CGG + chr1_2:54980942-54980961 None:intergenic 50.0%
CCCTCCTTCTCATCCCAAAC+TGG + chr1_2:54980588-54980607 None:intergenic 55.0%
TGGATGGCTGCTCTTCGTTC+GGG + chr1_2:54980941-54980960 None:intergenic 55.0%
AGTGACCTGATAGAGGGGCC+TGG - chr1_2:54980416-54980435 Msa0077910:intron 60.0%
GGATGGCTGCTCTTCGTTCG+GGG + chr1_2:54980940-54980959 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54978896 54981421 54978896 ID=Msa0077910;Name=Msa0077910
chr1_2 mRNA 54978896 54981421 54978896 ID=Msa0077910-mRNA-1;Parent=Msa0077910;Name=Msa0077910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|1|1|0.75|0.6|5|305|125
chr1_2 exon 54978896 54979244 54978896 ID=Msa0077910-mRNA-1:exon:17114;Parent=Msa0077910-mRNA-1
chr1_2 exon 54979339 54979493 54979339 ID=Msa0077910-mRNA-1:exon:17113;Parent=Msa0077910-mRNA-1
chr1_2 exon 54979609 54979654 54979609 ID=Msa0077910-mRNA-1:exon:17112;Parent=Msa0077910-mRNA-1
chr1_2 exon 54980984 54981123 54980984 ID=Msa0077910-mRNA-1:exon:17111;Parent=Msa0077910-mRNA-1
chr1_2 exon 54981259 54981421 54981259 ID=Msa0077910-mRNA-1:exon:17110;Parent=Msa0077910-mRNA-1
chr1_2 five_prime_UTR 54981259 54981421 54981259 ID=Msa0077910-mRNA-1:five_prime_utr;Parent=Msa0077910-mRNA-1
chr1_2 five_prime_UTR 54981117 54981123 54981117 ID=Msa0077910-mRNA-1:five_prime_utr;Parent=Msa0077910-mRNA-1
chr1_2 CDS 54980984 54981116 54980984 ID=Msa0077910-mRNA-1:cds;Parent=Msa0077910-mRNA-1
chr1_2 CDS 54979609 54979654 54979609 ID=Msa0077910-mRNA-1:cds;Parent=Msa0077910-mRNA-1
chr1_2 CDS 54979339 54979493 54979339 ID=Msa0077910-mRNA-1:cds;Parent=Msa0077910-mRNA-1
chr1_2 CDS 54979201 54979244 54979201 ID=Msa0077910-mRNA-1:cds;Parent=Msa0077910-mRNA-1
chr1_2 three_prime_UTR 54978896 54979200 54978896 ID=Msa0077910-mRNA-1:three_prime_utr;Parent=Msa0077910-mRNA-1
Gene Sequence

>Msa0077910

ATGGTGGTGAGTATTCGATTAGCGAGACTTGGATGCACACACAACCCATTTTACCGGGTTGTTGTAACTGATAGCAAATGTGCAAGAGACGGCAAGAACATCGAAGTTGTTGGTTACTACAATCCTATTGCAGCTAAAGATGATGAGAAAAGAGTGAACATCAAACTTGAAAGAGTGAAGTATTGGCTTTCTGTTGGTGCTCAACCTTCAGAACCTGTGGAGAGTCTTTTATTCAAGGCAGGTTTACAAATGAAACGGAAAGGTGGACTGTCTGGTAGCTACCCTGTTGATACCCCGAACGAAGAGCAGCCATCCAATGACAAAGAAGTTGATGGCGTATCTGCAGAAGCTGTACTTTCTATCGGCTTACAAGTTTAA

Protein sequence

>Msa0077910

MVVSIRLARLGCTHNPFYRVVVTDSKCARDGKNIEVVGYYNPIAAKDDEKRVNIKLERVKYWLSVGAQPSEPVESLLFKAGLQMKRKGGLSGSYPVDTPNEEQPSNDKEVDGVSAEAVLSIGLQV*