AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125800 MtrunA17_Chr1g0188001 96.800 125 4 0 1 125 1 125 1.88e-87 249
Msa0125800 MtrunA17_Chr2g0299541 59.048 105 36 1 1 98 1 105 1.20e-39 129
Msa0125800 MtrunA17_Chr5g0400271 58.095 105 37 1 1 98 1 105 2.43e-38 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125800 AT4G34620.1 65.854 82 28 0 1 82 1 82 2.63e-38 125
Msa0125800 AT5G56940.1 53.846 104 41 1 1 97 1 104 3.37e-38 126

Find 50 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACAACAACCCGGTAAAA+TGG 0.190138 1_3:+54436602 None:intergenic
TGGATGGCTGCTCTTCGTTC+GGG 0.277399 1_3:+54434911 None:intergenic
TTGGATGGCTGCTCTTCGTT+CGG 0.292007 1_3:+54434910 None:intergenic
ACCATCAACTTCTTTGTCAT+TGG 0.341893 1_3:+54434891 None:intergenic
CGGCAACTGCATTCGCATAA+AGG 0.342787 1_3:-54436840 Msa0125800:five_prime_UTR
GGTTACTACAATCCTATTGC+AGG 0.364917 1_3:-54436536 Msa0125800:intron
TCTTCGTTCGGGGTATCAAC+AGG 0.369294 1_3:+54434922 None:intergenic
ATTGATGTTGAACCTGCAAT+AGG 0.387393 1_3:+54436524 None:intergenic
AGAAAAGATATAAAGATAAG+AGG 0.394997 1_3:-54436875 Msa0125800:five_prime_UTR
AGATATAAAGATAAGAGGAT+TGG 0.404737 1_3:-54436870 Msa0125800:five_prime_UTR
GGGAATAACAGCCATATGTT+TGG 0.419842 1_3:-54434728 Msa0125800:three_prime_UTR
TAGATAGAGAGAGCAGGTTC+AGG 0.433335 1_3:-54436811 Msa0125800:intron
TCCAATGACAAAGAAGTTGA+TGG 0.440759 1_3:-54434892 Msa0125800:intron
AATGGGATAATAAAAGAGTT+CGG 0.443242 1_3:+54436916 None:intergenic
GATATAAAGATAAGAGGATT+GGG 0.445476 1_3:-54436869 Msa0125800:five_prime_UTR
TTTAGGTATTGGCTTTCTGT+TGG 0.451329 1_3:-54435030 Msa0125800:intron
GGCAACTGCATTCGCATAAA+GGG 0.456149 1_3:-54436839 Msa0125800:five_prime_UTR
AAAATAAATAAGTAAACAAC+AGG 0.456386 1_3:+54434498 None:intergenic
TTACAACAACCCGGTAAAAT+GGG 0.462639 1_3:+54436603 None:intergenic
AAACGGAAAGGTGGACTGTC+TGG 0.470726 1_3:-54434952 Msa0125800:CDS
ACCCACCTTCTCCAAACATA+TGG 0.476278 1_3:+54434717 None:intergenic
TCAACTTCTTTGTCATTGGA+TGG 0.482393 1_3:+54434895 None:intergenic
GTCAAGCATGCATACATGAC+AGG 0.500729 1_3:+54434595 None:intergenic
AGCCATATGTTTGGAGAAGG+TGG 0.501549 1_3:-54434719 Msa0125800:three_prime_UTR
AGGCAGGTTTACAAATGAAA+CGG 0.502953 1_3:-54434969 Msa0125800:CDS
GCAGAAGCTGTACTTTCTAT+CGG 0.514830 1_3:-54434768 Msa0125800:CDS
AGTATTCGATTAGCGAGACT+TGG 0.516156 1_3:-54436638 Msa0125800:CDS
GGCAAGAACATCGAAGTTGT+TGG 0.525645 1_3:-54436557 Msa0125800:CDS
ATAAAGATAAGAGGATTGGG+AGG 0.536090 1_3:-54436866 Msa0125800:five_prime_UTR
AGACTCTCCACAGGTTCTGA+AGG 0.549004 1_3:+54435000 None:intergenic
GATAGATAGATAGAGAGAGC+AGG 0.558251 1_3:-54436817 Msa0125800:five_prime_UTR
GCCATATGTTTGGAGAAGGT+GGG 0.570284 1_3:-54434718 Msa0125800:three_prime_UTR
TTGTTAACTGCTTGATCATG+AGG 0.574436 1_3:-54434539 Msa0125800:three_prime_UTR
TGCTCAACCTTCAGAACCTG+TGG 0.580737 1_3:-54435007 Msa0125800:CDS
AACAGCCATATGTTTGGAGA+AGG 0.582032 1_3:-54434722 Msa0125800:three_prime_UTR
CGGCTTACAAGTTTAACTGA+GGG 0.587865 1_3:-54434748 Msa0125800:exon
ATAAGAGGATTGGGAGGGAA+CGG 0.587928 1_3:-54436860 Msa0125800:five_prime_UTR
ATGCATACATGACAGGGTAG+AGG 0.589089 1_3:+54434602 None:intergenic
TTGAATAAAAGACTCTCCAC+AGG 0.595461 1_3:+54434991 None:intergenic
GGATGGCTGCTCTTCGTTCG+GGG 0.597237 1_3:+54434912 None:intergenic
CTTCGTTCGGGGTATCAACA+GGG 0.597733 1_3:+54434923 None:intergenic
AAACAGTTGACGATTTGCAA+TGG 0.600455 1_3:+54434675 None:intergenic
CAGTTGACGATTTGCAATGG+AGG 0.604254 1_3:+54434678 None:intergenic
GATAGCAAATGTGCAAGAGA+CGG 0.614709 1_3:-54436578 Msa0125800:CDS
TGCTATCAGTTACAACAACC+CGG 0.633843 1_3:+54436594 None:intergenic
TAAAGATAAGAGGATTGGGA+GGG 0.637738 1_3:-54436865 Msa0125800:five_prime_UTR
TCGGCTTACAAGTTTAACTG+AGG 0.642616 1_3:-54434749 Msa0125800:exon
TTACAAATGAAACGGAAAGG+TGG 0.647965 1_3:-54434961 Msa0125800:CDS
GGTTTACAAATGAAACGGAA+AGG 0.664042 1_3:-54434964 Msa0125800:CDS
TCAAGCATGCATACATGACA+GGG 0.664740 1_3:+54434596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTTTTAAAATTA+CGG - chr1_3:54435664-54435683 Msa0125800:intron 0.0%
!!! TTTAAAATGAATTTTTAAGT+GGG + chr1_3:54434459-54434478 None:intergenic 10.0%
!!! TTTTAAAATGAATTTTTAAG+TGG + chr1_3:54434460-54434479 None:intergenic 10.0%
!!! AAAATTGCATTTTTATTATT+TGG - chr1_3:54434962-54434981 Msa0125800:CDS 10.0%
!!! TATATGCAATATTTTATTTT+TGG + chr1_3:54435417-54435436 None:intergenic 10.0%
!! AAAATTTCAGAAAATTATTA+TGG + chr1_3:54435572-54435591 None:intergenic 10.0%
!!! TTTCATTTACATTTTATTTT+AGG - chr1_3:54436604-54436623 Msa0125800:CDS 10.0%
!!! TGTCTTATCTATTTTTAAAT+GGG + chr1_3:54434506-54434525 None:intergenic 15.0%
!!! AAAGAATTTTTCTTTCATTT+GGG - chr1_3:54434993-54435012 Msa0125800:CDS 15.0%
!! AAAGTAAATCAAGTTAAAAA+AGG + chr1_3:54436189-54436208 None:intergenic 15.0%
!! AAAATAAATAAGTAAACAAC+AGG + chr1_3:54436907-54436926 None:intergenic 15.0%
!!! CTGTCTTATCTATTTTTAAA+TGG + chr1_3:54434507-54434526 None:intergenic 20.0%
!! AGAAAAGATATAAAGATAAG+AGG - chr1_3:54434527-54434546 Msa0125800:three_prime_UTR 20.0%
!! AATATCATAATTCAACAACA+TGG + chr1_3:54434711-54434730 None:intergenic 20.0%
!! AACATATAGAATTAGAGATA+AGG + chr1_3:54434911-54434930 None:intergenic 20.0%
!! CAAATGAAAGAAAAATTCTT+TGG + chr1_3:54434994-54435013 None:intergenic 20.0%
!!! CAAAGAATTTTTCTTTCATT+TGG - chr1_3:54434992-54435011 Msa0125800:CDS 20.0%
!!! TTAAAGCACAAAATTGTTTT+GGG - chr1_3:54435039-54435058 Msa0125800:intron 20.0%
!! TAATTGATATTTGCATATGT+AGG - chr1_3:54435250-54435269 Msa0125800:intron 20.0%
!! TTATGAATATTGCATATAGA+AGG - chr1_3:54435384-54435403 Msa0125800:intron 20.0%
!! TATGAATATTGCATATAGAA+GGG - chr1_3:54435385-54435404 Msa0125800:intron 20.0%
!! ATGATTTACAATTACATACA+TGG - chr1_3:54435698-54435717 Msa0125800:intron 20.0%
!! TGTTTATAAATGATAAAACC+AGG + chr1_3:54435991-54436010 None:intergenic 20.0%
!!! GGTTTTATCATTTATAAACA+CGG - chr1_3:54435991-54436010 Msa0125800:intron 20.0%
!! AATCAAGTTAAAAAAGGATT+AGG + chr1_3:54436183-54436202 None:intergenic 20.0%
!!! TAGTTATTTGTACACAATTT+TGG - chr1_3:54436293-54436312 Msa0125800:intron 20.0%
!!! AGTTATTTGTACACAATTTT+GGG - chr1_3:54436294-54436313 Msa0125800:intron 20.0%
!!! ATGAATTTTTAAGTGGGATA+AGG + chr1_3:54434453-54434472 None:intergenic 25.0%
! AATGGGATAATAAAAGAGTT+CGG + chr1_3:54434489-54434508 None:intergenic 25.0%
! AGATATAAAGATAAGAGGAT+TGG - chr1_3:54434532-54434551 Msa0125800:three_prime_UTR 25.0%
! GATATAAAGATAAGAGGATT+GGG - chr1_3:54434533-54434552 Msa0125800:three_prime_UTR 25.0%
!! TCTCTTTTTCTTCAATTTCA+AGG - chr1_3:54434623-54434642 Msa0125800:three_prime_UTR 25.0%
! TTTCATTTGGGTATACTTTA+TGG - chr1_3:54435005-54435024 Msa0125800:CDS 25.0%
!! CTTAAAGCACAAAATTGTTT+TGG - chr1_3:54435038-54435057 Msa0125800:intron 25.0%
! AAGAGAGAGATAAAGATAAA+CGG - chr1_3:54435141-54435160 Msa0125800:intron 25.0%
! GATGTTCAAATAACATAACT+CGG - chr1_3:54435182-54435201 Msa0125800:CDS 25.0%
! ATGTTCAAATAACATAACTC+GGG - chr1_3:54435183-54435202 Msa0125800:CDS 25.0%
! AGCATACAATAATGTTCTAA+AGG + chr1_3:54435524-54435543 None:intergenic 25.0%
! TTGTATGCTTAATTTCACTT+TGG - chr1_3:54435535-54435554 Msa0125800:intron 25.0%
! GAAAATTATTATGGCAAGTA+AGG + chr1_3:54435563-54435582 None:intergenic 25.0%
! TTACAATTACATACATGGTA+TGG - chr1_3:54435703-54435722 Msa0125800:intron 25.0%
! AACGAACTGATGTATTTAAA+CGG - chr1_3:54435855-54435874 Msa0125800:intron 25.0%
!! TTCTACTTTGTAAAGTATCA+TGG - chr1_3:54435908-54435927 Msa0125800:intron 25.0%
! TTTATCATTTATAAACACGG+AGG - chr1_3:54435994-54436013 Msa0125800:intron 25.0%
! TTATCATTTATAAACACGGA+GGG - chr1_3:54435995-54436014 Msa0125800:intron 25.0%
!! ATCCTTTTACTATGGAATTA+TGG + chr1_3:54436063-54436082 None:intergenic 25.0%
!!! GCATTTTAATCCTTTTACTA+TGG + chr1_3:54436071-54436090 None:intergenic 25.0%
!! GTTATTTGTACACAATTTTG+GGG - chr1_3:54436295-54436314 Msa0125800:intron 25.0%
! TAAACTGTGTTTCAGTGTTT+TGG + chr1_3:54434670-54434689 None:intergenic 30.0%
! ATATTCTTACTGTTACTTGC+AGG - chr1_3:54434726-54434745 Msa0125800:three_prime_UTR 30.0%
GAGATAAAGATAAACGGATA+TGG - chr1_3:54435147-54435166 Msa0125800:intron 30.0%
! CATTTTTGCTAATGAGTAGT+GGG - chr1_3:54435226-54435245 Msa0125800:intron 30.0%
! ATATGTAGGACTTGTTTGAA+AGG - chr1_3:54435264-54435283 Msa0125800:intron 30.0%
!! TGTTGTGAGTTTCTAGATTT+TGG - chr1_3:54435299-54435318 Msa0125800:intron 30.0%
!! GTTGTGAGTTTCTAGATTTT+GGG - chr1_3:54435300-54435319 Msa0125800:intron 30.0%
!!! TTTTTTGTTCCTAGCTCTAA+GGG + chr1_3:54435359-54435378 None:intergenic 30.0%
AAATGACCATAATGAAACAC+AGG - chr1_3:54435461-54435480 Msa0125800:intron 30.0%
TCAACTTGAAATGAAAACAC+CGG + chr1_3:54435613-54435632 None:intergenic 30.0%
ATTAAATGGCAGATTGACAT+AGG + chr1_3:54435651-54435670 None:intergenic 30.0%
! GAATTTTCTGTGTTTACGAT+AGG - chr1_3:54435725-54435744 Msa0125800:intron 30.0%
CTTATCTGTTTGCATCTTAA+TGG - chr1_3:54435781-54435800 Msa0125800:intron 30.0%
TAATCAATAACCCAAACTGT+TGG - chr1_3:54436037-54436056 Msa0125800:intron 30.0%
GCAATTCACAGTAACAAATA+GGG + chr1_3:54436110-54436129 None:intergenic 30.0%
TGCAATTCACAGTAACAAAT+AGG + chr1_3:54436111-54436130 None:intergenic 30.0%
AATTGCAATGTATACCAGTT+TGG - chr1_3:54436124-54436143 Msa0125800:intron 30.0%
ATTGCAATGTATACCAGTTT+GGG - chr1_3:54436125-54436144 Msa0125800:intron 30.0%
GGGAAATTAGTGATAATTGT+GGG - chr1_3:54436315-54436334 Msa0125800:intron 30.0%
GGAAATTAGTGATAATTGTG+GGG - chr1_3:54436316-54436335 Msa0125800:intron 30.0%
AGATTCACATTCAAAAGTGA+AGG + chr1_3:54436548-54436567 None:intergenic 30.0%
ATAAAGATAAGAGGATTGGG+AGG - chr1_3:54434536-54434555 Msa0125800:three_prime_UTR 35.0%
TAAAGATAAGAGGATTGGGA+GGG - chr1_3:54434537-54434556 Msa0125800:three_prime_UTR 35.0%
! TGTTACTTGCAGGTGAAAAA+TGG - chr1_3:54434736-54434755 Msa0125800:exon 35.0%
TTACAACAACCCGGTAAAAT+GGG + chr1_3:54434802-54434821 None:intergenic 35.0%
ATTGATGTTGAACCTGCAAT+AGG + chr1_3:54434881-54434900 None:intergenic 35.0%
CATTTGGGTATACTTTATGG+TGG - chr1_3:54435008-54435027 Msa0125800:CDS 35.0%
! GGGATAAACACGTTTTCTTA+TGG - chr1_3:54435203-54435222 Msa0125800:intron 35.0%
! GCATTTTTGCTAATGAGTAG+TGG - chr1_3:54435225-54435244 Msa0125800:intron 35.0%
!!! GTTTTTTGTTCCTAGCTCTA+AGG + chr1_3:54435360-54435379 None:intergenic 35.0%
ACCATAATGAAACACAGGTT+TGG - chr1_3:54435466-54435485 Msa0125800:intron 35.0%
TCCAAACCTGTGTTTCATTA+TGG + chr1_3:54435470-54435489 None:intergenic 35.0%
! TTGTTCCGTGTAAGTTTTTC+CGG - chr1_3:54435591-54435610 Msa0125800:intron 35.0%
AAACACCGGAAAAACTTACA+CGG + chr1_3:54435599-54435618 None:intergenic 35.0%
CTGATTTCTGTTCTCAGTAT+GGG - chr1_3:54435757-54435776 Msa0125800:intron 35.0%
GGCCATAATTCCATAGTAAA+AGG - chr1_3:54436058-54436077 Msa0125800:intron 35.0%
GGGGAAATTAGTGATAATTG+TGG - chr1_3:54436314-54436333 Msa0125800:intron 35.0%
CAATACCTAAAGAACATGAG+GGG + chr1_3:54436363-54436382 None:intergenic 35.0%
CCAATACCTAAAGAACATGA+GGG + chr1_3:54436364-54436383 None:intergenic 35.0%
!! TTTAGGTATTGGCTTTCTGT+TGG - chr1_3:54436372-54436391 Msa0125800:intron 35.0%
TTGAATAAAAGACTCTCCAC+AGG + chr1_3:54436414-54436433 None:intergenic 35.0%
! TGTGGAGAGTCTTTTATTCA+AGG - chr1_3:54436413-54436432 Msa0125800:intron 35.0%
AGGCAGGTTTACAAATGAAA+CGG - chr1_3:54436433-54436452 Msa0125800:intron 35.0%
GGTTTACAAATGAAACGGAA+AGG - chr1_3:54436438-54436457 Msa0125800:intron 35.0%
TTACAAATGAAACGGAAAGG+TGG - chr1_3:54436441-54436460 Msa0125800:intron 35.0%
TCAACTTCTTTGTCATTGGA+TGG + chr1_3:54436510-54436529 None:intergenic 35.0%
TCCAATGACAAAGAAGTTGA+TGG - chr1_3:54436510-54436529 Msa0125800:intron 35.0%
ACCATCAACTTCTTTGTCAT+TGG + chr1_3:54436514-54436533 None:intergenic 35.0%
ATCTCGTTTAGCATTGTTTC+TGG - chr1_3:54436564-54436583 Msa0125800:CDS 35.0%
! TCTCGTTTAGCATTGTTTCT+GGG - chr1_3:54436565-54436584 Msa0125800:CDS 35.0%
AAACAGTTGACGATTTGCAA+TGG + chr1_3:54436730-54436749 None:intergenic 35.0%
TTGTTAACTGCTTGATCATG+AGG - chr1_3:54436863-54436882 Msa0125800:five_prime_UTR 35.0%
GATAGATAGATAGAGAGAGC+AGG - chr1_3:54434585-54434604 Msa0125800:three_prime_UTR 40.0%
TACTTGCAGGTGAAAAATGG+TGG - chr1_3:54434739-54434758 Msa0125800:exon 40.0%
AGTATTCGATTAGCGAGACT+TGG - chr1_3:54434764-54434783 Msa0125800:CDS 40.0%
GTTACAACAACCCGGTAAAA+TGG + chr1_3:54434803-54434822 None:intergenic 40.0%
TGCTATCAGTTACAACAACC+CGG + chr1_3:54434811-54434830 None:intergenic 40.0%
GATAGCAAATGTGCAAGAGA+CGG - chr1_3:54434824-54434843 Msa0125800:intron 40.0%
GGTTACTACAATCCTATTGC+AGG - chr1_3:54434866-54434885 Msa0125800:intron 40.0%
TTTAGCTATCCCTTAGAGCT+AGG - chr1_3:54435347-54435366 Msa0125800:intron 40.0%
CGATCGTTATCTCTTGTTAG+TGG - chr1_3:54435494-54435513 Msa0125800:intron 40.0%
GGCAGATTGACATAGGTTAT+AGG + chr1_3:54435644-54435663 None:intergenic 40.0%
CCATACTGAGAACAGAAATC+AGG + chr1_3:54435759-54435778 None:intergenic 40.0%
CCTGATTTCTGTTCTCAGTA+TGG - chr1_3:54435756-54435775 Msa0125800:intron 40.0%
!! AAACGGATTGAAGTCACTTG+AGG - chr1_3:54435872-54435891 Msa0125800:intron 40.0%
CTAGAAAGTGACCTGATAGA+GGG - chr1_3:54435964-54435983 Msa0125800:intron 40.0%
TAGAAAGTGACCTGATAGAG+GGG - chr1_3:54435965-54435984 Msa0125800:intron 40.0%
GGAATTATGGCCAACAGTTT+GGG + chr1_3:54436050-54436069 None:intergenic 40.0%
TGGAATTATGGCCAACAGTT+TGG + chr1_3:54436051-54436070 None:intergenic 40.0%
! TATACCAGTTTGGGATGAGA+AGG - chr1_3:54436134-54436153 Msa0125800:intron 40.0%
GTGATAATTGTGGGGATCAT+TGG - chr1_3:54436324-54436343 Msa0125800:intron 40.0%
CCCTCATGTTCTTTAGGTAT+TGG - chr1_3:54436361-54436380 Msa0125800:intron 40.0%
GCCAATACCTAAAGAACATG+AGG + chr1_3:54436365-54436384 None:intergenic 40.0%
! GAGAGTCTTTTATTCAAGGC+AGG - chr1_3:54436417-54436436 Msa0125800:intron 40.0%
GCAGAAGCTGTACTTTCTAT+CGG - chr1_3:54436634-54436653 Msa0125800:CDS 40.0%
TCGGCTTACAAGTTTAACTG+AGG - chr1_3:54436653-54436672 Msa0125800:exon 40.0%
CGGCTTACAAGTTTAACTGA+GGG - chr1_3:54436654-54436673 Msa0125800:exon 40.0%
GGGAATAACAGCCATATGTT+TGG - chr1_3:54436674-54436693 Msa0125800:intron 40.0%
AACAGCCATATGTTTGGAGA+AGG - chr1_3:54436680-54436699 Msa0125800:intron 40.0%
TCAAGCATGCATACATGACA+GGG + chr1_3:54436809-54436828 None:intergenic 40.0%
ATAAGAGGATTGGGAGGGAA+CGG - chr1_3:54434542-54434561 Msa0125800:three_prime_UTR 45.0%
GGCAACTGCATTCGCATAAA+GGG - chr1_3:54434563-54434582 Msa0125800:three_prime_UTR 45.0%
TAGATAGAGAGAGCAGGTTC+AGG - chr1_3:54434591-54434610 Msa0125800:three_prime_UTR 45.0%
! GCACACACAACCCATTTTAC+CGG - chr1_3:54434789-54434808 Msa0125800:intron 45.0%
! CACACACAACCCATTTTACC+GGG - chr1_3:54434790-54434809 Msa0125800:intron 45.0%
GGCAAGAACATCGAAGTTGT+TGG - chr1_3:54434845-54434864 Msa0125800:intron 45.0%
GCTAGAAAGTGACCTGATAG+AGG - chr1_3:54435963-54435982 Msa0125800:intron 45.0%
AACATGAGGGGAGGTTAAGA+TGG + chr1_3:54436351-54436370 None:intergenic 45.0%
AACCTCCCCTCATGTTCTTT+AGG - chr1_3:54436355-54436374 Msa0125800:intron 45.0%
TACCTAAAGAACATGAGGGG+AGG + chr1_3:54436360-54436379 None:intergenic 45.0%
AGCCATATGTTTGGAGAAGG+TGG - chr1_3:54436683-54436702 Msa0125800:intron 45.0%
GCCATATGTTTGGAGAAGGT+GGG - chr1_3:54436684-54436703 Msa0125800:intron 45.0%
ACCCACCTTCTCCAAACATA+TGG + chr1_3:54436688-54436707 None:intergenic 45.0%
CAGTTGACGATTTGCAATGG+AGG + chr1_3:54436727-54436746 None:intergenic 45.0%
ATGCATACATGACAGGGTAG+AGG + chr1_3:54436803-54436822 None:intergenic 45.0%
GTCAAGCATGCATACATGAC+AGG + chr1_3:54436810-54436829 None:intergenic 45.0%
!!! GTAATTTTAAAAAAATTAAA+TGG + chr1_3:54435665-54435684 None:intergenic 5.0%
CGGCAACTGCATTCGCATAA+AGG - chr1_3:54434562-54434581 Msa0125800:three_prime_UTR 50.0%
TAAAACCAGGCCCCTCTATC+AGG + chr1_3:54435978-54435997 None:intergenic 50.0%
! ACCAGTTTGGGATGAGAAGG+AGG - chr1_3:54436137-54436156 Msa0125800:intron 50.0%
! CCAGTTTGGGATGAGAAGGA+GGG - chr1_3:54436138-54436157 Msa0125800:intron 50.0%
TGCTCAACCTTCAGAACCTG+TGG - chr1_3:54436395-54436414 Msa0125800:intron 50.0%
! AGACTCTCCACAGGTTCTGA+AGG + chr1_3:54436405-54436424 None:intergenic 50.0%
!! AAACGGAAAGGTGGACTGTC+TGG - chr1_3:54436450-54436469 Msa0125800:intron 50.0%
! CTTCGTTCGGGGTATCAACA+GGG + chr1_3:54436482-54436501 None:intergenic 50.0%
! TCTTCGTTCGGGGTATCAAC+AGG + chr1_3:54436483-54436502 None:intergenic 50.0%
TTGGATGGCTGCTCTTCGTT+CGG + chr1_3:54436495-54436514 None:intergenic 50.0%
CCCTCCTTCTCATCCCAAAC+TGG + chr1_3:54436141-54436160 None:intergenic 55.0%
TGGATGGCTGCTCTTCGTTC+GGG + chr1_3:54436494-54436513 None:intergenic 55.0%
AGTGACCTGATAGAGGGGCC+TGG - chr1_3:54435970-54435989 Msa0125800:intron 60.0%
GGATGGCTGCTCTTCGTTCG+GGG + chr1_3:54436493-54436512 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 54434450 54436974 54434450 ID=Msa0125800;Name=Msa0125800
chr1_3 mRNA 54434450 54436974 54434450 ID=Msa0125800-mRNA-1;Parent=Msa0125800;Name=Msa0125800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|1|1|0.75|0.6|5|305|125
chr1_3 exon 54434450 54434798 54434450 ID=Msa0125800-mRNA-1:exon:16799;Parent=Msa0125800-mRNA-1
chr1_3 exon 54434893 54435047 54434893 ID=Msa0125800-mRNA-1:exon:16798;Parent=Msa0125800-mRNA-1
chr1_3 exon 54435163 54435208 54435163 ID=Msa0125800-mRNA-1:exon:16797;Parent=Msa0125800-mRNA-1
chr1_3 exon 54436537 54436676 54436537 ID=Msa0125800-mRNA-1:exon:16796;Parent=Msa0125800-mRNA-1
chr1_3 exon 54436812 54436974 54436812 ID=Msa0125800-mRNA-1:exon:16795;Parent=Msa0125800-mRNA-1
chr1_3 five_prime_UTR 54436812 54436974 54436812 ID=Msa0125800-mRNA-1:five_prime_utr;Parent=Msa0125800-mRNA-1
chr1_3 five_prime_UTR 54436670 54436676 54436670 ID=Msa0125800-mRNA-1:five_prime_utr;Parent=Msa0125800-mRNA-1
chr1_3 CDS 54436537 54436669 54436537 ID=Msa0125800-mRNA-1:cds;Parent=Msa0125800-mRNA-1
chr1_3 CDS 54435163 54435208 54435163 ID=Msa0125800-mRNA-1:cds;Parent=Msa0125800-mRNA-1
chr1_3 CDS 54434893 54435047 54434893 ID=Msa0125800-mRNA-1:cds;Parent=Msa0125800-mRNA-1
chr1_3 CDS 54434755 54434798 54434755 ID=Msa0125800-mRNA-1:cds;Parent=Msa0125800-mRNA-1
chr1_3 three_prime_UTR 54434450 54434754 54434450 ID=Msa0125800-mRNA-1:three_prime_utr;Parent=Msa0125800-mRNA-1
Gene Sequence

>Msa0125800

ATGGTGGTGAGTATTCGATTAGCGAGACTTGGATGCACACACAACCCATTTTACCGGGTTGTTGTAACTGATAGCAAATGTGCAAGAGACGGCAAGAACATCGAAGTTGTTGGTTACTACAATCCTATTGCAGCTAAAGATGATGAGAAAAGAGTGAACATCAAACTTGAAAGAGTGAAGTATTGGCTTTCTGTTGGTGCTCAACCTTCAGAACCTGTGGAGAGTCTTTTATTCAAGGCAGGTTTACAAATGAAACGGAAAGGTGGACTGTCTGGTAGCTACCCTGTTGATACCCCGAACGAAGAGCAGCCATCCAATGACAAAGAAGTTGATGGCGTATCTGCAGAAGCTGTACTTTCTATCGGCTTACAAGTTTAA

Protein sequence

>Msa0125800

MVVSIRLARLGCTHNPFYRVVVTDSKCARDGKNIEVVGYYNPIAAKDDEKRVNIKLERVKYWLSVGAQPSEPVESLLFKAGLQMKRKGGLSGSYPVDTPNEEQPSNDKEVDGVSAEAVLSIGLQV*