AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170440 MtrunA17_Chr1g0188001 96.800 125 4 0 1 125 1 125 1.88e-87 249
Msa0170440 MtrunA17_Chr2g0299541 59.048 105 36 1 1 98 1 105 1.20e-39 129
Msa0170440 MtrunA17_Chr5g0400271 58.095 105 37 1 1 98 1 105 2.43e-38 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170440 AT4G34620.1 65.854 82 28 0 1 82 1 82 2.63e-38 125
Msa0170440 AT5G56940.1 53.846 104 41 1 1 97 1 104 3.37e-38 126

Find 50 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACAACAACCCGGTAAAA+TGG 0.190138 1_4:+54437022 None:intergenic
TGGATGGCTGCTCTTCGTTC+GGG 0.277399 1_4:+54435360 None:intergenic
TTGGATGGCTGCTCTTCGTT+CGG 0.292007 1_4:+54435359 None:intergenic
ACCATCAACTTCTTTGTCAT+TGG 0.341893 1_4:+54435340 None:intergenic
CGGCAACTGCATTCGCATAA+AGG 0.342787 1_4:-54437260 Msa0170440:five_prime_UTR
GGTTACTACAATCCTATTGC+AGG 0.364917 1_4:-54436956 Msa0170440:intron
TCTTCGTTCGGGGTATCAAC+AGG 0.369294 1_4:+54435371 None:intergenic
ATTGATGTTGAACCTGCAAT+AGG 0.387393 1_4:+54436944 None:intergenic
AGAAAAGATATAAAGATAAG+AGG 0.394997 1_4:-54437295 Msa0170440:five_prime_UTR
AGATATAAAGATAAGAGGAT+TGG 0.404737 1_4:-54437290 Msa0170440:five_prime_UTR
GGGAATAACAGCCATATGTT+TGG 0.419842 1_4:-54435177 Msa0170440:three_prime_UTR
TAGATAGAGAGAGCAGGTTC+AGG 0.433335 1_4:-54437231 Msa0170440:intron
TCCAATGACAAAGAAGTTGA+TGG 0.440759 1_4:-54435341 Msa0170440:intron
AATGGGATAATAAAAGAGTT+CGG 0.443242 1_4:+54437336 None:intergenic
GATATAAAGATAAGAGGATT+GGG 0.445476 1_4:-54437289 Msa0170440:five_prime_UTR
TTTAGGTATTGGCTTTCTGT+TGG 0.451329 1_4:-54435479 Msa0170440:intron
GGCAACTGCATTCGCATAAA+GGG 0.456149 1_4:-54437259 Msa0170440:five_prime_UTR
AAAATAAATAAGTAAACAAC+AGG 0.456386 1_4:+54434947 None:intergenic
TTACAACAACCCGGTAAAAT+GGG 0.462639 1_4:+54437023 None:intergenic
AAACGGAAAGGTGGACTGTC+TGG 0.470726 1_4:-54435401 Msa0170440:CDS
ACCCACCTTCTCCAAACATA+TGG 0.476278 1_4:+54435166 None:intergenic
TCAACTTCTTTGTCATTGGA+TGG 0.482393 1_4:+54435344 None:intergenic
GTCAAGCATGCATACATGAC+AGG 0.500729 1_4:+54435044 None:intergenic
AGCCATATGTTTGGAGAAGG+TGG 0.501549 1_4:-54435168 Msa0170440:three_prime_UTR
AGGCAGGTTTACAAATGAAA+CGG 0.502953 1_4:-54435418 Msa0170440:CDS
GCAGAAGCTGTACTTTCTAT+CGG 0.514830 1_4:-54435217 Msa0170440:CDS
AGTATTCGATTAGCGAGACT+TGG 0.516156 1_4:-54437058 Msa0170440:CDS
GGCAAGAACATCGAAGTTGT+TGG 0.525645 1_4:-54436977 Msa0170440:CDS
ATAAAGATAAGAGGATTGGG+AGG 0.536090 1_4:-54437286 Msa0170440:five_prime_UTR
AGACTCTCCACAGGTTCTGA+AGG 0.549004 1_4:+54435449 None:intergenic
GATAGATAGATAGAGAGAGC+AGG 0.558251 1_4:-54437237 Msa0170440:five_prime_UTR
GCCATATGTTTGGAGAAGGT+GGG 0.570284 1_4:-54435167 Msa0170440:three_prime_UTR
TTGTTAACTGCTTGATCATG+AGG 0.574436 1_4:-54434988 Msa0170440:three_prime_UTR
TGCTCAACCTTCAGAACCTG+TGG 0.580737 1_4:-54435456 Msa0170440:CDS
AACAGCCATATGTTTGGAGA+AGG 0.582032 1_4:-54435171 Msa0170440:three_prime_UTR
CGGCTTACAAGTTTAACTGA+GGG 0.587865 1_4:-54435197 Msa0170440:exon
ATAAGAGGATTGGGAGGGAA+CGG 0.587928 1_4:-54437280 Msa0170440:five_prime_UTR
ATGCATACATGACAGGGTAG+AGG 0.589089 1_4:+54435051 None:intergenic
TTGAATAAAAGACTCTCCAC+AGG 0.595461 1_4:+54435440 None:intergenic
GGATGGCTGCTCTTCGTTCG+GGG 0.597237 1_4:+54435361 None:intergenic
CTTCGTTCGGGGTATCAACA+GGG 0.597733 1_4:+54435372 None:intergenic
AAACAGTTGACGATTTGCAA+TGG 0.600455 1_4:+54435124 None:intergenic
CAGTTGACGATTTGCAATGG+AGG 0.604254 1_4:+54435127 None:intergenic
GATAGCAAATGTGCAAGAGA+CGG 0.614709 1_4:-54436998 Msa0170440:CDS
TGCTATCAGTTACAACAACC+CGG 0.633843 1_4:+54437014 None:intergenic
TAAAGATAAGAGGATTGGGA+GGG 0.637738 1_4:-54437285 Msa0170440:five_prime_UTR
TCGGCTTACAAGTTTAACTG+AGG 0.642616 1_4:-54435198 Msa0170440:exon
TTACAAATGAAACGGAAAGG+TGG 0.647965 1_4:-54435410 Msa0170440:CDS
GGTTTACAAATGAAACGGAA+AGG 0.664042 1_4:-54435413 Msa0170440:CDS
TCAAGCATGCATACATGACA+GGG 0.664740 1_4:+54435045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTTTTAAAATTA+CGG - chr1_4:54436113-54436132 Msa0170440:intron 0.0%
!!! TTTAAAATGAATTTTTAAGT+GGG + chr1_4:54434908-54434927 None:intergenic 10.0%
!!! TTTTAAAATGAATTTTTAAG+TGG + chr1_4:54434909-54434928 None:intergenic 10.0%
!!! AAAATTGCATTTTTATTATT+TGG - chr1_4:54435411-54435430 Msa0170440:CDS 10.0%
!!! TATATGCAATATTTTATTTT+TGG + chr1_4:54435866-54435885 None:intergenic 10.0%
!! AAAATTTCAGAAAATTATTA+TGG + chr1_4:54436021-54436040 None:intergenic 10.0%
!!! TTTCATTTACATTTTATTTT+AGG - chr1_4:54437024-54437043 Msa0170440:CDS 10.0%
!!! TGTCTTATCTATTTTTAAAT+GGG + chr1_4:54434955-54434974 None:intergenic 15.0%
!!! AAAGAATTTTTCTTTCATTT+GGG - chr1_4:54435442-54435461 Msa0170440:CDS 15.0%
!! AAAGTAAATCAAGTTAAAAA+AGG + chr1_4:54436609-54436628 None:intergenic 15.0%
!! AAAATAAATAAGTAAACAAC+AGG + chr1_4:54437327-54437346 None:intergenic 15.0%
!!! CTGTCTTATCTATTTTTAAA+TGG + chr1_4:54434956-54434975 None:intergenic 20.0%
!! AGAAAAGATATAAAGATAAG+AGG - chr1_4:54434976-54434995 Msa0170440:three_prime_UTR 20.0%
!! AATATCATAATTCAACAACA+TGG + chr1_4:54435160-54435179 None:intergenic 20.0%
!! AACATATAGAATTAGAGATA+AGG + chr1_4:54435360-54435379 None:intergenic 20.0%
!! CAAATGAAAGAAAAATTCTT+TGG + chr1_4:54435443-54435462 None:intergenic 20.0%
!!! CAAAGAATTTTTCTTTCATT+TGG - chr1_4:54435441-54435460 Msa0170440:CDS 20.0%
!!! TTAAAGCACAAAATTGTTTT+GGG - chr1_4:54435488-54435507 Msa0170440:intron 20.0%
!! TAATTGATATTTGCATATGT+AGG - chr1_4:54435699-54435718 Msa0170440:intron 20.0%
!! TTATGAATATTGCATATAGA+AGG - chr1_4:54435833-54435852 Msa0170440:intron 20.0%
!! TATGAATATTGCATATAGAA+GGG - chr1_4:54435834-54435853 Msa0170440:intron 20.0%
!! ATGATTTACAATTACATACA+TGG - chr1_4:54436147-54436166 Msa0170440:intron 20.0%
!! TGTTTATAAATGATAAAACC+AGG + chr1_4:54436410-54436429 None:intergenic 20.0%
!!! GGTTTTATCATTTATAAACA+CGG - chr1_4:54436410-54436429 Msa0170440:intron 20.0%
!!! CATTTTTAATCCTTTTACTA+TGG + chr1_4:54436490-54436509 None:intergenic 20.0%
!! AATCAAGTTAAAAAAGGATT+AGG + chr1_4:54436603-54436622 None:intergenic 20.0%
!!! TAGTTATTTGTACACAATTT+TGG - chr1_4:54436713-54436732 Msa0170440:intron 20.0%
!!! AGTTATTTGTACACAATTTT+GGG - chr1_4:54436714-54436733 Msa0170440:intron 20.0%
!!! ATGAATTTTTAAGTGGGATA+AGG + chr1_4:54434902-54434921 None:intergenic 25.0%
! AATGGGATAATAAAAGAGTT+CGG + chr1_4:54434938-54434957 None:intergenic 25.0%
! AGATATAAAGATAAGAGGAT+TGG - chr1_4:54434981-54435000 Msa0170440:three_prime_UTR 25.0%
! GATATAAAGATAAGAGGATT+GGG - chr1_4:54434982-54435001 Msa0170440:three_prime_UTR 25.0%
!! TCTCTTTTTCTTCAATTTCA+AGG - chr1_4:54435072-54435091 Msa0170440:three_prime_UTR 25.0%
!! ATATTATTACTGTTACTTGC+AGG - chr1_4:54435175-54435194 Msa0170440:three_prime_UTR 25.0%
! TTTCATTTGGGTATACTTTA+TGG - chr1_4:54435454-54435473 Msa0170440:CDS 25.0%
!! CTTAAAGCACAAAATTGTTT+TGG - chr1_4:54435487-54435506 Msa0170440:intron 25.0%
! AAGAGAGAGATAAAGATAAA+CGG - chr1_4:54435590-54435609 Msa0170440:intron 25.0%
! GATGTTCAAATAACATAACT+CGG - chr1_4:54435631-54435650 Msa0170440:CDS 25.0%
! ATGTTCAAATAACATAACTC+GGG - chr1_4:54435632-54435651 Msa0170440:CDS 25.0%
! AGCATACAATAATGTTCTAA+AGG + chr1_4:54435973-54435992 None:intergenic 25.0%
! TTGTATGCTTAATTTCACTT+TGG - chr1_4:54435984-54436003 Msa0170440:intron 25.0%
! GAAAATTATTATGGCAAGTA+AGG + chr1_4:54436012-54436031 None:intergenic 25.0%
! TTACAATTACATACATGGTA+TGG - chr1_4:54436152-54436171 Msa0170440:intron 25.0%
! AACGAACTGATGTATTTAAA+CGG - chr1_4:54436304-54436323 Msa0170440:intron 25.0%
! TTTATCATTTATAAACACGG+AGG - chr1_4:54436413-54436432 Msa0170440:intron 25.0%
! TTATCATTTATAAACACGGA+GGG - chr1_4:54436414-54436433 Msa0170440:intron 25.0%
!! ATCCTTTTACTATGGAATTA+TGG + chr1_4:54436482-54436501 None:intergenic 25.0%
!! GTTATTTGTACACAATTTTG+GGG - chr1_4:54436715-54436734 Msa0170440:intron 25.0%
! TAAACTGTGTTTCAGTGTTT+TGG + chr1_4:54435119-54435138 None:intergenic 30.0%
GAGATAAAGATAAACGGATA+TGG - chr1_4:54435596-54435615 Msa0170440:intron 30.0%
! CATTTTTGCTAATGAGTAGT+GGG - chr1_4:54435675-54435694 Msa0170440:intron 30.0%
! ATATGTAGGACTTGTTTGAA+AGG - chr1_4:54435713-54435732 Msa0170440:intron 30.0%
!! TGTTGTGAGTTTCTAGATTT+TGG - chr1_4:54435748-54435767 Msa0170440:intron 30.0%
!! GTTGTGAGTTTCTAGATTTT+GGG - chr1_4:54435749-54435768 Msa0170440:intron 30.0%
!!! TTTTTTGTTCCTAGCTCTAA+GGG + chr1_4:54435808-54435827 None:intergenic 30.0%
AAATGACCATAATGAAACAC+AGG - chr1_4:54435910-54435929 Msa0170440:intron 30.0%
TCAACTTGAAATGAAAACAC+CGG + chr1_4:54436062-54436081 None:intergenic 30.0%
ATTAAATGGCAGATTGACAT+AGG + chr1_4:54436100-54436119 None:intergenic 30.0%
! GAATTTTCTGTGTTTACGAT+AGG - chr1_4:54436174-54436193 Msa0170440:intron 30.0%
CTTATCTGTTTGCATCTTAA+TGG - chr1_4:54436230-54436249 Msa0170440:intron 30.0%
TAATCAATAACCCAAACTGT+TGG - chr1_4:54436456-54436475 Msa0170440:intron 30.0%
GCAATTCACAGTAACAAATA+GGG + chr1_4:54436530-54436549 None:intergenic 30.0%
TGCAATTCACAGTAACAAAT+AGG + chr1_4:54436531-54436550 None:intergenic 30.0%
AATTGCAATGTATACCAGTT+TGG - chr1_4:54436544-54436563 Msa0170440:intron 30.0%
ATTGCAATGTATACCAGTTT+GGG - chr1_4:54436545-54436564 Msa0170440:intron 30.0%
GGGAAATTAGTGATAATTGT+GGG - chr1_4:54436735-54436754 Msa0170440:intron 30.0%
GGAAATTAGTGATAATTGTG+GGG - chr1_4:54436736-54436755 Msa0170440:intron 30.0%
AGATTCACATTCAAAAGTGA+AGG + chr1_4:54436968-54436987 None:intergenic 30.0%
ATAAAGATAAGAGGATTGGG+AGG - chr1_4:54434985-54435004 Msa0170440:three_prime_UTR 35.0%
TAAAGATAAGAGGATTGGGA+GGG - chr1_4:54434986-54435005 Msa0170440:three_prime_UTR 35.0%
! TGTTACTTGCAGGTGAAAAA+TGG - chr1_4:54435185-54435204 Msa0170440:exon 35.0%
TTACAACAACCCGGTAAAAT+GGG + chr1_4:54435251-54435270 None:intergenic 35.0%
ATTGATGTTGAACCTGCAAT+AGG + chr1_4:54435330-54435349 None:intergenic 35.0%
CATTTGGGTATACTTTATGG+TGG - chr1_4:54435457-54435476 Msa0170440:CDS 35.0%
! GGGATAAACACGTTTTCTTA+TGG - chr1_4:54435652-54435671 Msa0170440:intron 35.0%
! GCATTTTTGCTAATGAGTAG+TGG - chr1_4:54435674-54435693 Msa0170440:intron 35.0%
!!! GTTTTTTGTTCCTAGCTCTA+AGG + chr1_4:54435809-54435828 None:intergenic 35.0%
ACCATAATGAAACACAGGTT+TGG - chr1_4:54435915-54435934 Msa0170440:intron 35.0%
TCCAAACCTGTGTTTCATTA+TGG + chr1_4:54435919-54435938 None:intergenic 35.0%
! TTGTTCCGTGTAAGTTTTTC+CGG - chr1_4:54436040-54436059 Msa0170440:intron 35.0%
AAACACCGGAAAAACTTACA+CGG + chr1_4:54436048-54436067 None:intergenic 35.0%
CTGATTTCTGTTCTCAGTAT+GGG - chr1_4:54436206-54436225 Msa0170440:intron 35.0%
GGCCATAATTCCATAGTAAA+AGG - chr1_4:54436477-54436496 Msa0170440:intron 35.0%
GGGGAAATTAGTGATAATTG+TGG - chr1_4:54436734-54436753 Msa0170440:intron 35.0%
CAATACCTAAAGAACATGAG+GGG + chr1_4:54436783-54436802 None:intergenic 35.0%
CCAATACCTAAAGAACATGA+GGG + chr1_4:54436784-54436803 None:intergenic 35.0%
!! TTTAGGTATTGGCTTTCTGT+TGG - chr1_4:54436792-54436811 Msa0170440:intron 35.0%
TTGAATAAAAGACTCTCCAC+AGG + chr1_4:54436834-54436853 None:intergenic 35.0%
! TGTGGAGAGTCTTTTATTCA+AGG - chr1_4:54436833-54436852 Msa0170440:intron 35.0%
AGGCAGGTTTACAAATGAAA+CGG - chr1_4:54436853-54436872 Msa0170440:intron 35.0%
GGTTTACAAATGAAACGGAA+AGG - chr1_4:54436858-54436877 Msa0170440:intron 35.0%
TTACAAATGAAACGGAAAGG+TGG - chr1_4:54436861-54436880 Msa0170440:intron 35.0%
TCAACTTCTTTGTCATTGGA+TGG + chr1_4:54436930-54436949 None:intergenic 35.0%
TCCAATGACAAAGAAGTTGA+TGG - chr1_4:54436930-54436949 Msa0170440:intron 35.0%
ACCATCAACTTCTTTGTCAT+TGG + chr1_4:54436934-54436953 None:intergenic 35.0%
ATCTCGTTTAGCATTGTTTC+TGG - chr1_4:54436984-54437003 Msa0170440:CDS 35.0%
! TCTCGTTTAGCATTGTTTCT+GGG - chr1_4:54436985-54437004 Msa0170440:CDS 35.0%
AAACAGTTGACGATTTGCAA+TGG + chr1_4:54437150-54437169 None:intergenic 35.0%
TTGTTAACTGCTTGATCATG+AGG - chr1_4:54437283-54437302 Msa0170440:five_prime_UTR 35.0%
GATAGATAGATAGAGAGAGC+AGG - chr1_4:54435034-54435053 Msa0170440:three_prime_UTR 40.0%
TACTTGCAGGTGAAAAATGG+TGG - chr1_4:54435188-54435207 Msa0170440:exon 40.0%
AGTATTCGATTAGCGAGACT+TGG - chr1_4:54435213-54435232 Msa0170440:CDS 40.0%
GTTACAACAACCCGGTAAAA+TGG + chr1_4:54435252-54435271 None:intergenic 40.0%
TGCTATCAGTTACAACAACC+CGG + chr1_4:54435260-54435279 None:intergenic 40.0%
GATAGCAAATGTGCAAGAGA+CGG - chr1_4:54435273-54435292 Msa0170440:intron 40.0%
GGTTACTACAATCCTATTGC+AGG - chr1_4:54435315-54435334 Msa0170440:intron 40.0%
TTTAGCTATCCCTTAGAGCT+AGG - chr1_4:54435796-54435815 Msa0170440:intron 40.0%
CGATCGTTATCTCTTGTTAG+TGG - chr1_4:54435943-54435962 Msa0170440:intron 40.0%
GGCAGATTGACATAGGTTAT+AGG + chr1_4:54436093-54436112 None:intergenic 40.0%
CCATACTGAGAACAGAAATC+AGG + chr1_4:54436208-54436227 None:intergenic 40.0%
CCTGATTTCTGTTCTCAGTA+TGG - chr1_4:54436205-54436224 Msa0170440:intron 40.0%
!! AAACGGATTGAAGTCACTTG+AGG - chr1_4:54436321-54436340 Msa0170440:intron 40.0%
CTAGAAAGTGACCTGATAGA+GGG - chr1_4:54436383-54436402 Msa0170440:intron 40.0%
TAGAAAGTGACCTGATAGAG+GGG - chr1_4:54436384-54436403 Msa0170440:intron 40.0%
GGAATTATGGCCAACAGTTT+GGG + chr1_4:54436469-54436488 None:intergenic 40.0%
TGGAATTATGGCCAACAGTT+TGG + chr1_4:54436470-54436489 None:intergenic 40.0%
! TATACCAGTTTGGGATGAGA+AGG - chr1_4:54436554-54436573 Msa0170440:intron 40.0%
GTGATAATTGTGGGGATCAT+TGG - chr1_4:54436744-54436763 Msa0170440:intron 40.0%
CCCTCATGTTCTTTAGGTAT+TGG - chr1_4:54436781-54436800 Msa0170440:intron 40.0%
GCCAATACCTAAAGAACATG+AGG + chr1_4:54436785-54436804 None:intergenic 40.0%
! GAGAGTCTTTTATTCAAGGC+AGG - chr1_4:54436837-54436856 Msa0170440:intron 40.0%
GCAGAAGCTGTACTTTCTAT+CGG - chr1_4:54437054-54437073 Msa0170440:CDS 40.0%
TCGGCTTACAAGTTTAACTG+AGG - chr1_4:54437073-54437092 Msa0170440:exon 40.0%
CGGCTTACAAGTTTAACTGA+GGG - chr1_4:54437074-54437093 Msa0170440:exon 40.0%
GGGAATAACAGCCATATGTT+TGG - chr1_4:54437094-54437113 Msa0170440:intron 40.0%
AACAGCCATATGTTTGGAGA+AGG - chr1_4:54437100-54437119 Msa0170440:intron 40.0%
TCAAGCATGCATACATGACA+GGG + chr1_4:54437229-54437248 None:intergenic 40.0%
ATAAGAGGATTGGGAGGGAA+CGG - chr1_4:54434991-54435010 Msa0170440:three_prime_UTR 45.0%
GGCAACTGCATTCGCATAAA+GGG - chr1_4:54435012-54435031 Msa0170440:three_prime_UTR 45.0%
TAGATAGAGAGAGCAGGTTC+AGG - chr1_4:54435040-54435059 Msa0170440:three_prime_UTR 45.0%
! GCACACACAACCCATTTTAC+CGG - chr1_4:54435238-54435257 Msa0170440:intron 45.0%
! CACACACAACCCATTTTACC+GGG - chr1_4:54435239-54435258 Msa0170440:intron 45.0%
GGCAAGAACATCGAAGTTGT+TGG - chr1_4:54435294-54435313 Msa0170440:intron 45.0%
GCTAGAAAGTGACCTGATAG+AGG - chr1_4:54436382-54436401 Msa0170440:intron 45.0%
AACATGAGGGGAGGTTAAGA+TGG + chr1_4:54436771-54436790 None:intergenic 45.0%
AACCTCCCCTCATGTTCTTT+AGG - chr1_4:54436775-54436794 Msa0170440:intron 45.0%
TACCTAAAGAACATGAGGGG+AGG + chr1_4:54436780-54436799 None:intergenic 45.0%
AGCCATATGTTTGGAGAAGG+TGG - chr1_4:54437103-54437122 Msa0170440:intron 45.0%
GCCATATGTTTGGAGAAGGT+GGG - chr1_4:54437104-54437123 Msa0170440:intron 45.0%
ACCCACCTTCTCCAAACATA+TGG + chr1_4:54437108-54437127 None:intergenic 45.0%
CAGTTGACGATTTGCAATGG+AGG + chr1_4:54437147-54437166 None:intergenic 45.0%
ATGCATACATGACAGGGTAG+AGG + chr1_4:54437223-54437242 None:intergenic 45.0%
GTCAAGCATGCATACATGAC+AGG + chr1_4:54437230-54437249 None:intergenic 45.0%
!!! GTAATTTTAAAAAAATTAAA+TGG + chr1_4:54436114-54436133 None:intergenic 5.0%
CGGCAACTGCATTCGCATAA+AGG - chr1_4:54435011-54435030 Msa0170440:three_prime_UTR 50.0%
TAAAACCAGGCCCCTCTATC+AGG + chr1_4:54436397-54436416 None:intergenic 50.0%
! ACCAGTTTGGGATGAGAAGG+AGG - chr1_4:54436557-54436576 Msa0170440:intron 50.0%
! CCAGTTTGGGATGAGAAGGA+GGG - chr1_4:54436558-54436577 Msa0170440:intron 50.0%
TGCTCAACCTTCAGAACCTG+TGG - chr1_4:54436815-54436834 Msa0170440:intron 50.0%
! AGACTCTCCACAGGTTCTGA+AGG + chr1_4:54436825-54436844 None:intergenic 50.0%
!! AAACGGAAAGGTGGACTGTC+TGG - chr1_4:54436870-54436889 Msa0170440:intron 50.0%
! CTTCGTTCGGGGTATCAACA+GGG + chr1_4:54436902-54436921 None:intergenic 50.0%
! TCTTCGTTCGGGGTATCAAC+AGG + chr1_4:54436903-54436922 None:intergenic 50.0%
TTGGATGGCTGCTCTTCGTT+CGG + chr1_4:54436915-54436934 None:intergenic 50.0%
CCCTCCTTCTCATCCCAAAC+TGG + chr1_4:54436561-54436580 None:intergenic 55.0%
TGGATGGCTGCTCTTCGTTC+GGG + chr1_4:54436914-54436933 None:intergenic 55.0%
AGTGACCTGATAGAGGGGCC+TGG - chr1_4:54436389-54436408 Msa0170440:intron 60.0%
GGATGGCTGCTCTTCGTTCG+GGG + chr1_4:54436913-54436932 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54434899 54437394 54434899 ID=Msa0170440;Name=Msa0170440
chr1_4 mRNA 54434899 54437394 54434899 ID=Msa0170440-mRNA-1;Parent=Msa0170440;Name=Msa0170440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|1|1|0.75|0.6|5|305|125
chr1_4 exon 54434899 54435247 54434899 ID=Msa0170440-mRNA-1:exon:16263;Parent=Msa0170440-mRNA-1
chr1_4 exon 54435342 54435496 54435342 ID=Msa0170440-mRNA-1:exon:16262;Parent=Msa0170440-mRNA-1
chr1_4 exon 54435612 54435657 54435612 ID=Msa0170440-mRNA-1:exon:16261;Parent=Msa0170440-mRNA-1
chr1_4 exon 54436957 54437096 54436957 ID=Msa0170440-mRNA-1:exon:16260;Parent=Msa0170440-mRNA-1
chr1_4 exon 54437232 54437394 54437232 ID=Msa0170440-mRNA-1:exon:16259;Parent=Msa0170440-mRNA-1
chr1_4 five_prime_UTR 54437232 54437394 54437232 ID=Msa0170440-mRNA-1:five_prime_utr;Parent=Msa0170440-mRNA-1
chr1_4 five_prime_UTR 54437090 54437096 54437090 ID=Msa0170440-mRNA-1:five_prime_utr;Parent=Msa0170440-mRNA-1
chr1_4 CDS 54436957 54437089 54436957 ID=Msa0170440-mRNA-1:cds;Parent=Msa0170440-mRNA-1
chr1_4 CDS 54435612 54435657 54435612 ID=Msa0170440-mRNA-1:cds;Parent=Msa0170440-mRNA-1
chr1_4 CDS 54435342 54435496 54435342 ID=Msa0170440-mRNA-1:cds;Parent=Msa0170440-mRNA-1
chr1_4 CDS 54435204 54435247 54435204 ID=Msa0170440-mRNA-1:cds;Parent=Msa0170440-mRNA-1
chr1_4 three_prime_UTR 54434899 54435203 54434899 ID=Msa0170440-mRNA-1:three_prime_utr;Parent=Msa0170440-mRNA-1
Gene Sequence

>Msa0170440

ATGGTGGTGAGTATTCGATTAGCGAGACTTGGATGCACACACAACCCATTTTACCGGGTTGTTGTAACTGATAGCAAATGTGCAAGAGACGGCAAGAACATCGAAGTTGTTGGTTACTACAATCCTATTGCAGCTAAAGATGATGAGAAAAGAGTGAACATCAAACTTGAAAGAGTGAAGTATTGGCTTTCTGTTGGTGCTCAACCTTCAGAACCTGTGGAGAGTCTTTTATTCAAGGCAGGTTTACAAATGAAACGGAAAGGTGGACTGTCTGGTAGCTACCCTGTTGATACCCCGAACGAAGAGCAGCCATCCAATGACAAAGAAGTTGATGGCGTATCTGCAGAAGCTGTACTTTCTATCGGCTTACAAGTTTAA

Protein sequence

>Msa0170440

MVVSIRLARLGCTHNPFYRVVVTDSKCARDGKNIEVVGYYNPIAAKDDEKRVNIKLERVKYWLSVGAQPSEPVESLLFKAGLQMKRKGGLSGSYPVDTPNEEQPSNDKEVDGVSAEAVLSIGLQV*