Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055640 | sp|Q6NQH9|CID6_ARATH | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.50e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055640 | G7I5S9 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 8.73e-132 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007470 | Msa0055640 | 0.803187 | 3.929569e-49 | -8.615850e-47 |
| Msa0015090 | Msa0055640 | 0.820168 | 7.907802e-53 | -8.615850e-47 |
| Msa0020410 | Msa0055640 | 0.800486 | 1.409350e-48 | -8.615850e-47 |
| Msa0032080 | Msa0055640 | 0.840390 | 8.948645e-58 | -8.615850e-47 |
| Msa0032100 | Msa0055640 | 0.804246 | 2.368124e-49 | -8.615850e-47 |
| Msa0049750 | Msa0055640 | 0.815394 | 9.456045e-52 | -8.615850e-47 |
| Msa0055580 | Msa0055640 | 0.877620 | 5.430800e-69 | -8.615850e-47 |
| Msa0055640 | Msa0071250 | 0.810321 | 1.221812e-50 | -8.615850e-47 |
| Msa0055640 | Msa0096700 | 0.809573 | 1.770326e-50 | -8.615850e-47 |
| Msa0055640 | Msa0098990 | 0.802255 | 6.118146e-49 | -8.615850e-47 |
| Msa0055640 | Msa0103480 | 0.800496 | 1.402703e-48 | -8.615850e-47 |
| Msa0055640 | Msa0138020 | 0.809348 | 1.977765e-50 | -8.615850e-47 |
| Msa0055640 | Msa0150230 | 0.811406 | 7.112429e-51 | -8.615850e-47 |
| Msa0055640 | Msa0160960 | 0.806605 | 7.586369e-50 | -8.615850e-47 |
| Msa0055640 | Msa0187490 | 0.810774 | 9.751038e-51 | -8.615850e-47 |
| Msa0055640 | Msa0189030 | 0.814362 | 1.601113e-51 | -8.615850e-47 |
| Msa0055640 | Msa0196670 | 0.843456 | 1.385938e-58 | -8.615850e-47 |
| Msa0055640 | Msa0197610 | 0.806352 | 8.575688e-50 | -8.615850e-47 |
| Msa0055640 | Msa0236420 | 0.800457 | 1.428634e-48 | -8.615850e-47 |
| Msa0055640 | Msa0240270 | 0.804110 | 2.528089e-49 | -8.615850e-47 |
| Msa0055640 | Msa0269560 | 0.812342 | 4.448842e-51 | -8.615850e-47 |
| Msa0055640 | Msa0273770 | 0.806812 | 6.859357e-50 | -8.615850e-47 |
| Msa0055640 | Msa0299660 | 0.813260 | 2.800285e-51 | -8.615850e-47 |
| Msa0055640 | Msa0300150 | 0.802125 | 6.505967e-49 | -8.615850e-47 |
| Msa0055640 | Msa0364790 | 0.813701 | 2.240161e-51 | -8.615850e-47 |
| Msa0055640 | Msa0371950 | 0.804134 | 2.498822e-49 | -8.615850e-47 |
| Msa0055640 | Msa0388730 | 0.826867 | 2.142546e-54 | -8.615850e-47 |
| Msa0055640 | Msa0403770 | 0.813463 | 2.527270e-51 | -8.615850e-47 |
| Msa0055640 | Msa0427580 | 0.818367 | 2.033657e-52 | -8.615850e-47 |
| Msa0055640 | Msa0518170 | 0.814093 | 1.836320e-51 | -8.615850e-47 |
| Msa0055640 | Msa0545050 | 0.814640 | 1.390163e-51 | -8.615850e-47 |
| Msa0055640 | Msa0566350 | 0.809016 | 2.330391e-50 | -8.615850e-47 |
| Msa0055640 | Msa0566750 | 0.805940 | 1.047053e-49 | -8.615850e-47 |
| Msa0055640 | Msa0581400 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa0055640 | Msa0600590 | 0.811475 | 6.872166e-51 | -8.615850e-47 |
| Msa0055640 | Msa0641130 | 0.814936 | 1.195262e-51 | -8.615850e-47 |
| Msa0055640 | Msa0705990 | 0.800938 | 1.139621e-48 | -8.615850e-47 |
| Msa0055640 | Msa0711150 | 0.805588 | 1.241574e-49 | -8.615850e-47 |
| Msa0055640 | Msa0713380 | 0.800155 | 1.645884e-48 | -8.615850e-47 |
| Msa0055640 | Msa0738030 | 0.806604 | 7.587177e-50 | -8.615850e-47 |
| Msa0055640 | Msa0750850 | 0.802773 | 4.785343e-49 | -8.615850e-47 |
| Msa0055640 | Msa0764920 | 0.808561 | 2.914992e-50 | -8.615850e-47 |
| Msa0055640 | Msa0765180 | 0.800198 | 1.612442e-48 | -8.615850e-47 |
| Msa0055640 | Msa0765440 | 0.838548 | 2.694237e-57 | -8.615850e-47 |
| Msa0055640 | Msa0795340 | 0.802821 | 4.677688e-49 | -8.615850e-47 |
| Msa0055640 | Msa0801790 | 0.808743 | 2.665471e-50 | -8.615850e-47 |
| Msa0055640 | Msa0812950 | 0.854782 | 9.784065e-62 | -8.615850e-47 |
| Msa0055640 | Msa0844610 | 0.805034 | 1.621632e-49 | -8.615850e-47 |
| Msa0055640 | Msa0853440 | 0.812302 | 4.538949e-51 | -8.615850e-47 |
| Msa0055640 | Msa0863720 | 0.821833 | 3.272448e-53 | -8.615850e-47 |
| Msa0055640 | Msa0880810 | 0.802391 | 5.736699e-49 | -8.615850e-47 |
| Msa0055640 | Msa0894710 | 0.813540 | 2.430835e-51 | -8.615850e-47 |
| Msa0055640 | Msa0958920 | 0.810387 | 1.181953e-50 | -8.615850e-47 |
| Msa0055640 | Msa0994370 | 0.822719 | 2.037917e-53 | -8.615850e-47 |
| Msa0055640 | Msa1006730 | 0.817896 | 2.599062e-52 | -8.615850e-47 |
| Msa0055640 | Msa1023300 | 0.810692 | 1.015860e-50 | -8.615850e-47 |
| Msa0055640 | Msa1023310 | 0.847892 | 8.672435e-60 | -8.615850e-47 |
| Msa0055640 | Msa1026640 | 0.802030 | 6.807602e-49 | -8.615850e-47 |
| Msa0055640 | Msa1062040 | 0.813058 | 3.101935e-51 | -8.615850e-47 |
| Msa0055640 | Msa1077340 | 0.820012 | 8.586357e-53 | -8.615850e-47 |
| Msa0055640 | Msa1081790 | -0.803051 | 4.191836e-49 | -8.615850e-47 |
| Msa0055640 | Msa1094280 | 0.801136 | 1.038330e-48 | -8.615850e-47 |
| Msa0055640 | Msa1107200 | 0.824161 | 9.377132e-54 | -8.615850e-47 |
| Msa0055640 | Msa1107260 | 0.835069 | 2.079081e-56 | -8.615850e-47 |
| Msa0055640 | Msa1109810 | 0.807707 | 4.432667e-50 | -8.615850e-47 |
| Msa0055640 | Msa1150780 | 0.820838 | 5.551484e-53 | -8.615850e-47 |
| Msa0055640 | Msa1150790 | 0.812245 | 4.672155e-51 | -8.615850e-47 |
| Msa0055640 | Msa1150800 | 0.820169 | 7.904356e-53 | -8.615850e-47 |
| Msa0055640 | Msa1150810 | 0.820617 | 6.240001e-53 | -8.615850e-47 |
| Msa0055640 | Msa1150900 | 0.816863 | 4.441812e-52 | -8.615850e-47 |
| Msa0055640 | Msa1160560 | 0.806628 | 7.500451e-50 | -8.615850e-47 |
| Msa0055640 | Msa1208370 | 0.801967 | 7.013539e-49 | -8.615850e-47 |
| Msa0055640 | Msa1208380 | 0.832694 | 8.168574e-56 | -8.615850e-47 |
| Msa0055640 | Msa1214170 | 0.826330 | 2.878791e-54 | -8.615850e-47 |
| Msa0055640 | Msa1218580 | 0.803464 | 3.442970e-49 | -8.615850e-47 |
| Msa0055640 | Msa1221330 | 0.826156 | 3.166648e-54 | -8.615850e-47 |
| Msa0055640 | Msa1270730 | 0.800248 | 1.575427e-48 | -8.615850e-47 |
| Msa0055640 | Msa1272010 | 0.837351 | 5.470314e-57 | -8.615850e-47 |
| Msa0055640 | Msa1279480 | 0.805694 | 1.179319e-49 | -8.615850e-47 |
| Msa0055640 | Msa1291450 | 0.832426 | 9.515319e-56 | -8.615850e-47 |
| Msa0055640 | Msa1316360 | 0.808285 | 3.337966e-50 | -8.615850e-47 |
| Msa0055640 | Msa1347330 | 0.811746 | 5.999307e-51 | -8.615850e-47 |
| Msa0055640 | Msa1355180 | 0.814487 | 1.502628e-51 | -8.615850e-47 |
| Msa0055640 | Msa1355890 | 0.846768 | 1.764983e-59 | -8.615850e-47 |
| Msa0055640 | Msa1360020 | 0.825303 | 5.044655e-54 | -8.615850e-47 |
| Msa0055640 | Msa1419840 | 0.805977 | 1.028699e-49 | -8.615850e-47 |
| Msa0055640 | Msa1421210 | 0.815441 | 9.232685e-52 | -8.615850e-47 |
| Msa0055640 | Msa1423820 | 0.801820 | 7.517845e-49 | -8.615850e-47 |
| Msa0055640 | Msa1428780 | 0.815180 | 1.054980e-51 | -8.615850e-47 |
| Msa0055640 | Msa1430130 | 0.809299 | 2.026481e-50 | -8.615850e-47 |
| Msa0055640 | Msa1438840 | 0.812156 | 4.885709e-51 | -8.615850e-47 |
| Msa0055640 | Msa1460750 | 0.807355 | 5.263324e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055640 | MtrunA17_Chr1g0148571 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 1.68e-135 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055640 | AT5G25540.1 | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.52e-24 | 94.7 |
| Msa0055640 | AT5G25540.3 | 39.306 | 173 | 86 | 5 | 2 | 172 | 1 | 156 | 1.52e-24 | 94.7 |
| Msa0055640 | AT5G11440.1 | 38.172 | 186 | 69 | 7 | 2 | 181 | 1 | 146 | 9.32e-24 | 92.0 |
| Msa0055640 | AT5G11440.2 | 38.172 | 186 | 69 | 7 | 2 | 181 | 1 | 146 | 9.32e-24 | 92.0 |
| Msa0055640 | AT5G25540.2 | 37.956 | 137 | 71 | 3 | 2 | 136 | 1 | 125 | 7.20e-18 | 76.3 |
Find 65 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTGATTTGGAATATCTT+AGG | 0.249147 | 1_2:-10752832 | Msa0055640:CDS |
| GCAGAATCAGCTGGCATAAC+AGG | 0.299732 | 1_2:+10751584 | None:intergenic |
| CACCTAAAGTAAAACTTTCC+TGG | 0.300180 | 1_2:+10751428 | None:intergenic |
| GTACCTTGGTGAGCAACTTT+GGG | 0.318523 | 1_2:-10751158 | Msa0055640:three_prime_UTR |
| ATCAATTCACCATTCACATT+TGG | 0.324125 | 1_2:+10751495 | None:intergenic |
| GAAGATTCCAAGGACTATAA+TGG | 0.336500 | 1_2:-10753025 | Msa0055640:CDS |
| TGAAGAGCTTGATATTGATT+TGG | 0.356150 | 1_2:-10752843 | Msa0055640:CDS |
| TGTACCTTGGTGAGCAACTT+TGG | 0.360623 | 1_2:-10751159 | Msa0055640:three_prime_UTR |
| TTGCTACACACAATTGGTTT+TGG | 0.365984 | 1_2:-10751472 | Msa0055640:three_prime_UTR |
| TCTAACATTAGTGTCCCTTT+TGG | 0.366851 | 1_2:+10753060 | None:intergenic |
| CTTCCAGAGTCGCTGGATAT+TGG | 0.369329 | 1_2:-10751620 | Msa0055640:CDS |
| TATCTTAGGATGACATTTCC+TGG | 0.384113 | 1_2:-10752818 | Msa0055640:CDS |
| TTTCAATTGTATGAATTTGA+AGG | 0.416754 | 1_2:-10751285 | Msa0055640:three_prime_UTR |
| ATTGATTTGCTACACACAAT+TGG | 0.422783 | 1_2:-10751478 | Msa0055640:three_prime_UTR |
| AAGATTCCAAGGACTATAAT+GGG | 0.425801 | 1_2:-10753024 | Msa0055640:CDS |
| TGCTCACCAAGGTACAATTC+AGG | 0.425971 | 1_2:+10751166 | None:intergenic |
| GCTGACAGAGAATCAGTATA+TGG | 0.429347 | 1_2:-10752867 | Msa0055640:CDS |
| GACAAGTTGCACATCATTTG+TGG | 0.436093 | 1_2:+10752973 | None:intergenic |
| TTTCTCTATCTGCTTCGCTT+TGG | 0.436888 | 1_2:-10753719 | Msa0055640:intron |
| TACAGTCCCATTATAGTCCT+TGG | 0.442789 | 1_2:+10753018 | None:intergenic |
| GGAACGTACGCAGCTGCATA+TGG | 0.448700 | 1_2:+10753088 | None:intergenic |
| CGTACGTTCCTATGGCCAAA+AGG | 0.452015 | 1_2:-10753075 | Msa0055640:CDS |
| CAATGTAAACAGTGGTGACT+TGG | 0.452279 | 1_2:-10752765 | Msa0055640:CDS |
| AACGCTCAAAGGCTCTCTCC+GGG | 0.456586 | 1_2:-10752944 | Msa0055640:CDS |
| GAACGCTCAAAGGCTCTCTC+CGG | 0.458973 | 1_2:-10752945 | Msa0055640:CDS |
| ACATCATTTGTGGTATATTG+AGG | 0.475780 | 1_2:+10752983 | None:intergenic |
| TCACCAATATCCAGCGACTC+TGG | 0.486657 | 1_2:+10751617 | None:intergenic |
| TGCAGCTGCGTACGTTCCTA+TGG | 0.491027 | 1_2:-10753083 | Msa0055640:CDS |
| AGGACTATAATGGGACTGTA+TGG | 0.501746 | 1_2:-10753015 | Msa0055640:CDS |
| TTTAAGATTATACCTCAAGT+TGG | 0.519886 | 1_2:+10752720 | None:intergenic |
| TGGAAGTCTTCCAGAGTCGC+TGG | 0.520324 | 1_2:-10751627 | Msa0055640:CDS |
| AAACAGAAGAATGCAACAGC+TGG | 0.520914 | 1_2:-10751554 | Msa0055640:CDS |
| TACCTTGGTGAGCAACTTTG+GGG | 0.523031 | 1_2:-10751157 | Msa0055640:three_prime_UTR |
| CAAGTGATGAGATGAAGTAC+TGG | 0.526656 | 1_2:+10751529 | None:intergenic |
| AATTGATTTCCAAATGTGAA+TGG | 0.529082 | 1_2:-10751504 | Msa0055640:three_prime_UTR |
| GAAAAGTAAGAGCTCGAAGC+AGG | 0.531344 | 1_2:+10752911 | None:intergenic |
| AAGGCCAGCGAAAACAAAGT+TGG | 0.534459 | 1_2:-10751266 | Msa0055640:three_prime_UTR |
| TTAGGAAGAACAAGACAAGA+AGG | 0.539994 | 1_2:-10753168 | Msa0055640:intron |
| TTTGATGAAGCAGAATCAGC+TGG | 0.546972 | 1_2:+10751575 | None:intergenic |
| AAGGGAAAACCACCTTCACT+TGG | 0.548208 | 1_2:+10751215 | None:intergenic |
| TTTCCCTTGGGATAGATAGG+TGG | 0.551341 | 1_2:-10751200 | Msa0055640:three_prime_UTR |
| TTACTGCCTGAATTGTACCT+TGG | 0.554744 | 1_2:-10751172 | Msa0055640:three_prime_UTR |
| AGTAAGAGCTCGAAGCAGGC+TGG | 0.559139 | 1_2:+10752915 | None:intergenic |
| GTACGTTCCTATGGCCAAAA+GGG | 0.559981 | 1_2:-10753074 | Msa0055640:CDS |
| GGATTCAAAGAAGACTTTCG+CGG | 0.573737 | 1_2:+10753109 | None:intergenic |
| GATGATGCTGTTGACGCTCA+TGG | 0.575449 | 1_2:-10751647 | Msa0055640:CDS |
| TTGTCGAGAAGAACGCTCAA+AGG | 0.582696 | 1_2:-10752955 | Msa0055640:CDS |
| TTGAGAGCGATCTGATCGAA+AGG | 0.592377 | 1_2:+10753762 | None:intergenic |
| TTACATTGTAGACATCTACA+AGG | 0.595095 | 1_2:+10752780 | None:intergenic |
| CAAGCCACCTATCTATCCCA+AGG | 0.606070 | 1_2:+10751196 | None:intergenic |
| TAGGAAGAACAAGACAAGAA+GGG | 0.606483 | 1_2:-10753167 | Msa0055640:five_prime_UTR |
| AATACATATCCAAGTGAAGG+TGG | 0.607758 | 1_2:-10751224 | Msa0055640:three_prime_UTR |
| AGCAAAACAAGACACGGCTG+AGG | 0.610759 | 1_2:+10751369 | None:intergenic |
| TCATTTGTGGTATATTGAGG+AGG | 0.614473 | 1_2:+10752986 | None:intergenic |
| TTATGTGACAGAAGATTCCA+AGG | 0.616516 | 1_2:-10753035 | Msa0055640:CDS |
| GTCAGCTGTGCCACACTCTG+TGG | 0.634116 | 1_2:+10752884 | None:intergenic |
| GATATAAATAGTGTAAAACC+AGG | 0.659196 | 1_2:-10751446 | Msa0055640:three_prime_UTR |
| AAGCCACCTATCTATCCCAA+GGG | 0.661101 | 1_2:+10751197 | None:intergenic |
| TGAGATGCTAAGCCAACTTG+AGG | 0.661491 | 1_2:-10752732 | Msa0055640:intron |
| TACATTGTAGACATCTACAA+GGG | 0.670208 | 1_2:+10752781 | None:intergenic |
| AGGGACTCATCAGATATACC+AGG | 0.671666 | 1_2:+10752800 | None:intergenic |
| AACCCCAAAGTTGCTCACCA+AGG | 0.672047 | 1_2:+10751155 | None:intergenic |
| ACGCTCAAAGGCTCTCTCCG+GGG | 0.694097 | 1_2:-10752943 | Msa0055640:CDS |
| ATATTAAGCAAAACAAGACA+CGG | 0.699341 | 1_2:+10751363 | None:intergenic |
| GATGTCTACAATGTAAACAG+TGG | 0.761880 | 1_2:-10752773 | Msa0055640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTGATTTTCTT+AGG | - | chr1_2:10751688-10751707 | Msa0055640:intron | 10.0% |
| !! | AAAGTTATAATCTTTGTAAA+TGG | - | chr1_2:10751520-10751539 | Msa0055640:exon | 15.0% |
| !! | AAGTTATAATCTTTGTAAAT+GGG | - | chr1_2:10751521-10751540 | Msa0055640:exon | 15.0% |
| !!! | TTTTGCATATATGAATTTTT+TGG | - | chr1_2:10751592-10751611 | Msa0055640:CDS | 15.0% |
| !!! | ATCTTAAAATTATTAGCTTT+TGG | - | chr1_2:10752169-10752188 | Msa0055640:intron | 15.0% |
| !!! | TCTTAAAATTATTAGCTTTT+GGG | - | chr1_2:10752170-10752189 | Msa0055640:intron | 15.0% |
| !! | AAATATAATTGTAACTATCA+AGG | - | chr1_2:10752453-10752472 | Msa0055640:intron | 15.0% |
| !! | ATATAAATATCAAGACAATA+TGG | + | chr1_2:10752715-10752734 | None:intergenic | 15.0% |
| !!! | TACTGTTTTGTGTTATTTAA+TGG | - | chr1_2:10751305-10751324 | Msa0055640:three_prime_UTR | 20.0% |
| !!! | ATTTTTGTTTATCTTGATCT+TGG | - | chr1_2:10751391-10751410 | Msa0055640:three_prime_UTR | 20.0% |
| !!! | ATTTTTTGGTTTTGAATCTT+TGG | - | chr1_2:10751606-10751625 | Msa0055640:CDS | 20.0% |
| !!! | ATATTGATTTGGAATATCTT+AGG | - | chr1_2:10752042-10752061 | Msa0055640:intron | 20.0% |
| !! | TGATTGGAATATATGAAAAA+AGG | + | chr1_2:10752221-10752240 | None:intergenic | 20.0% |
| !! | TTATATTTATAAATCCCGAA+TGG | + | chr1_2:10752441-10752460 | None:intergenic | 20.0% |
| !! | TTATATATGCAGATGAAAAT+AGG | - | chr1_2:10752970-10752989 | Msa0055640:CDS | 20.0% |
| !! | AAAAACAAACTCTCAAAAAT+TGG | + | chr1_2:10753192-10753211 | None:intergenic | 20.0% |
| !! | TTTCAATTGTATGAATTTGA+AGG | - | chr1_2:10753589-10753608 | Msa0055640:intron | 20.0% |
| ! | TAAAATAACAGCGATTTGAA+GGG | + | chr1_2:10751193-10751212 | None:intergenic | 25.0% |
| ! | ATAAAATAACAGCGATTTGA+AGG | + | chr1_2:10751194-10751213 | None:intergenic | 25.0% |
| ! | TTGATCTTGGAAATGTTTAA+AGG | - | chr1_2:10751404-10751423 | Msa0055640:three_prime_UTR | 25.0% |
| ! | TGATCTTGGAAATGTTTAAA+GGG | - | chr1_2:10751405-10751424 | Msa0055640:three_prime_UTR | 25.0% |
| ! | AAGTTCTTGATATGATTTCA+TGG | - | chr1_2:10751495-10751514 | Msa0055640:three_prime_UTR | 25.0% |
| ! | AAAAATCAATAGCTAAAGCA+TGG | + | chr1_2:10751576-10751595 | None:intergenic | 25.0% |
| !! | TTTAAGATTATACCTCAAGT+TGG | + | chr1_2:10752157-10752176 | None:intergenic | 25.0% |
| !! | CATAATTTCCAGTTAATTTG+TGG | + | chr1_2:10752496-10752515 | None:intergenic | 25.0% |
| ! | CACAAATTAACTGGAAATTA+TGG | - | chr1_2:10752494-10752513 | Msa0055640:intron | 25.0% |
| ! | ATTAACTGGAAATTATGGTT+AGG | - | chr1_2:10752499-10752518 | Msa0055640:intron | 25.0% |
| ! | AAACAAACATAACAGGAAAT+GGG | + | chr1_2:10752752-10752771 | None:intergenic | 25.0% |
| ! | AAAACAAACATAACAGGAAA+TGG | + | chr1_2:10752753-10752772 | None:intergenic | 25.0% |
| ! | AGTCTTAAAACAAACATAAC+AGG | + | chr1_2:10752759-10752778 | None:intergenic | 25.0% |
| !!! | GTTATGTTTGTTTTAAGACT+TGG | - | chr1_2:10752759-10752778 | Msa0055640:CDS | 25.0% |
| !!! | ACATGTTCAGTTTTTGTTTT+AGG | - | chr1_2:10752865-10752884 | Msa0055640:CDS | 25.0% |
| !! | CTGATTTGAATCTAGTATAT+AGG | - | chr1_2:10752917-10752936 | Msa0055640:CDS | 25.0% |
| ! | TACTCTCATAATCATGTTAA+TGG | - | chr1_2:10753136-10753155 | Msa0055640:exon | 25.0% |
| !! | AATTGATTTCCAAATGTGAA+TGG | - | chr1_2:10753370-10753389 | Msa0055640:intron | 25.0% |
| ! | GATATAAATAGTGTAAAACC+AGG | - | chr1_2:10753428-10753447 | Msa0055640:intron | 25.0% |
| ! | ATATTAAGCAAAACAAGACA+CGG | + | chr1_2:10753514-10753533 | None:intergenic | 25.0% |
| !! | TATTTTTCTTCTAACTCGTT+TGG | + | chr1_2:10753634-10753653 | None:intergenic | 25.0% |
| ! | AAAAATACATATCCAAGTGA+AGG | - | chr1_2:10753647-10753666 | Msa0055640:intron | 25.0% |
| !!! | TTCTTTTCAGTTTTGTTTGA+TGG | - | chr1_2:10753778-10753797 | Msa0055640:five_prime_UTR | 25.0% |
| AGATCGCTCTCAAAAAATTA+GGG | - | chr1_2:10751122-10751141 | Msa0055640:three_prime_UTR | 30.0% | |
| GATCTTGGAAATGTTTAAAG+GGG | - | chr1_2:10751406-10751425 | Msa0055640:three_prime_UTR | 30.0% | |
| ATCTTGGAAATGTTTAAAGG+GGG | - | chr1_2:10751407-10751426 | Msa0055640:three_prime_UTR | 30.0% | |
| AAGATTCCAAGGACTATAAT+GGG | - | chr1_2:10751850-10751869 | Msa0055640:intron | 30.0% | |
| ACATCATTTGTGGTATATTG+AGG | + | chr1_2:10751894-10751913 | None:intergenic | 30.0% | |
| ! | TGAAGAGCTTGATATTGATT+TGG | - | chr1_2:10752031-10752050 | Msa0055640:intron | 30.0% |
| TACATTGTAGACATCTACAA+GGG | + | chr1_2:10752096-10752115 | None:intergenic | 30.0% | |
| TTACATTGTAGACATCTACA+AGG | + | chr1_2:10752097-10752116 | None:intergenic | 30.0% | |
| ATTACAGTCACTTAACTGAT+TGG | + | chr1_2:10752237-10752256 | None:intergenic | 30.0% | |
| GACTGTAATTGTAACTATCA+AGG | - | chr1_2:10752248-10752267 | Msa0055640:intron | 30.0% | |
| ! | TTCGATTTGACTGGAAAATT+TGG | - | chr1_2:10752289-10752308 | Msa0055640:intron | 30.0% |
| TTTGACTGGAAAATTTGGTT+AGG | - | chr1_2:10752294-10752313 | Msa0055640:intron | 30.0% | |
| ATAAAAGTCACTGAACTGAT+TGG | + | chr1_2:10752338-10752357 | None:intergenic | 30.0% | |
| ! | TCAGTTCAGTGACTTTTATT+CGG | - | chr1_2:10752339-10752358 | Msa0055640:intron | 30.0% |
| TGACTAGACTTTCATACATA+TGG | + | chr1_2:10752417-10752436 | None:intergenic | 30.0% | |
| ATCATATGCCACAAATTAAC+TGG | - | chr1_2:10752485-10752504 | Msa0055640:intron | 30.0% | |
| TTAGGATGTGTAGTTAAATG+TGG | - | chr1_2:10752517-10752536 | Msa0055640:intron | 30.0% | |
| AATAAGAAGTTATCATCTCG+TGG | - | chr1_2:10752623-10752642 | Msa0055640:intron | 30.0% | |
| !!! | TTTAAGACTTGGTGTTTTTC+TGG | - | chr1_2:10752770-10752789 | Msa0055640:CDS | 30.0% |
| !!! | TGTTCAGTTTTTGTTTTAGG+TGG | - | chr1_2:10752868-10752887 | Msa0055640:CDS | 30.0% |
| ! | ACTTCTTTGCTGATTAATGT+TGG | - | chr1_2:10753017-10753036 | Msa0055640:CDS | 30.0% |
| ATCAATTCACCATTCACATT+TGG | + | chr1_2:10753382-10753401 | None:intergenic | 30.0% | |
| !! | ATTGATTTGCTACACACAAT+TGG | - | chr1_2:10753396-10753415 | Msa0055640:intron | 30.0% |
| ! | AACCAGGAAAGTTTTACTTT+AGG | - | chr1_2:10753444-10753463 | Msa0055640:intron | 30.0% |
| !!! | GTGTCTTGTTTTGCTTAATA+TGG | - | chr1_2:10753513-10753532 | Msa0055640:intron | 30.0% |
| ! | ATGTTCTCTTTTTGATGAGT+TGG | - | chr1_2:10753542-10753561 | Msa0055640:intron | 30.0% |
| CAGATCGCTCTCAAAAAATT+AGG | - | chr1_2:10751121-10751140 | Msa0055640:three_prime_UTR | 35.0% | |
| AATCAATAGCTAAAGCATGG+TGG | + | chr1_2:10751573-10751592 | None:intergenic | 35.0% | |
| TTAGGAAGAACAAGACAAGA+AGG | - | chr1_2:10751706-10751725 | Msa0055640:intron | 35.0% | |
| TAGGAAGAACAAGACAAGAA+GGG | - | chr1_2:10751707-10751726 | Msa0055640:intron | 35.0% | |
| ! | TCTAACATTAGTGTCCCTTT+TGG | + | chr1_2:10751817-10751836 | None:intergenic | 35.0% |
| TTATGTGACAGAAGATTCCA+AGG | - | chr1_2:10751839-10751858 | Msa0055640:intron | 35.0% | |
| GAAGATTCCAAGGACTATAA+TGG | - | chr1_2:10751849-10751868 | Msa0055640:intron | 35.0% | |
| TCATTTGTGGTATATTGAGG+AGG | + | chr1_2:10751891-10751910 | None:intergenic | 35.0% | |
| TATCTTAGGATGACATTTCC+TGG | - | chr1_2:10752056-10752075 | Msa0055640:intron | 35.0% | |
| GATGTCTACAATGTAAACAG+TGG | - | chr1_2:10752101-10752120 | Msa0055640:intron | 35.0% | |
| ! | ATCATATGCTTCGATTTGAC+TGG | - | chr1_2:10752280-10752299 | Msa0055640:intron | 35.0% |
| CTGGAAAATTTGGTTAGGTT+AGG | - | chr1_2:10752299-10752318 | Msa0055640:intron | 35.0% | |
| ! | CAGTTCAGTGACTTTTATTC+GGG | - | chr1_2:10752340-10752359 | Msa0055640:intron | 35.0% |
| TGAAAGTCTAGTCAACCATT+CGG | - | chr1_2:10752423-10752442 | Msa0055640:intron | 35.0% | |
| ! | GAAAAGAGTATACACAGGAA+GGG | + | chr1_2:10752567-10752586 | None:intergenic | 35.0% |
| TGTCATCTGAAGATAGTCTT+CGG | + | chr1_2:10752595-10752614 | None:intergenic | 35.0% | |
| AGACTATCTTCAGATGACAT+TGG | - | chr1_2:10752596-10752615 | Msa0055640:intron | 35.0% | |
| ! | AACCACAAAGCATTACACAT+GGG | + | chr1_2:10752816-10752835 | None:intergenic | 35.0% |
| !!! | CAGTTTTTGTTTTAGGTGGA+AGG | - | chr1_2:10752872-10752891 | Msa0055640:CDS | 35.0% |
| TTTGCGTAGAGAGAAAACTT+TGG | - | chr1_2:10753108-10753127 | Msa0055640:CDS | 35.0% | |
| !! | TTGCTACACACAATTGGTTT+TGG | - | chr1_2:10753402-10753421 | Msa0055640:intron | 35.0% |
| !!! | TACACACAATTGGTTTTGGT+TGG | - | chr1_2:10753406-10753425 | Msa0055640:intron | 35.0% |
| CACCTAAAGTAAAACTTTCC+TGG | + | chr1_2:10753449-10753468 | None:intergenic | 35.0% | |
| AATACATATCCAAGTGAAGG+TGG | - | chr1_2:10753650-10753669 | Msa0055640:intron | 35.0% | |
| TTTCTCTATCTGCTTCGCTT+TGG | - | chr1_2:10751155-10751174 | Msa0055640:three_prime_UTR | 40.0% | |
| GGATTCAAAGAAGACTTTCG+CGG | + | chr1_2:10751768-10751787 | None:intergenic | 40.0% | |
| TACAGTCCCATTATAGTCCT+TGG | + | chr1_2:10751859-10751878 | None:intergenic | 40.0% | |
| ! | AGGACTATAATGGGACTGTA+TGG | - | chr1_2:10751859-10751878 | Msa0055640:intron | 40.0% |
| GACAAGTTGCACATCATTTG+TGG | + | chr1_2:10751904-10751923 | None:intergenic | 40.0% | |
| GCTGACAGAGAATCAGTATA+TGG | - | chr1_2:10752007-10752026 | Msa0055640:intron | 40.0% | |
| CAATGTAAACAGTGGTGACT+TGG | - | chr1_2:10752109-10752128 | Msa0055640:intron | 40.0% | |
| GAAAGTCTAGTCAACCATTC+GGG | - | chr1_2:10752424-10752443 | Msa0055640:intron | 40.0% | |
| ! | GGAAAAGAGTATACACAGGA+AGG | + | chr1_2:10752568-10752587 | None:intergenic | 40.0% |
| ! | GAACGGAAAAGAGTATACAC+AGG | + | chr1_2:10752572-10752591 | None:intergenic | 40.0% |
| GTCATCTGAAGATAGTCTTC+GGG | + | chr1_2:10752594-10752613 | None:intergenic | 40.0% | |
| TTCCCATGTGTAATGCTTTG+TGG | - | chr1_2:10752811-10752830 | Msa0055640:CDS | 40.0% | |
| ! | GAACCACAAAGCATTACACA+TGG | + | chr1_2:10752817-10752836 | None:intergenic | 40.0% |
| TTTGATGAAGCAGAATCAGC+TGG | + | chr1_2:10753302-10753321 | None:intergenic | 40.0% | |
| AAACAGAAGAATGCAACAGC+TGG | - | chr1_2:10753320-10753339 | Msa0055640:intron | 40.0% | |
| CAAGTGATGAGATGAAGTAC+TGG | + | chr1_2:10753348-10753367 | None:intergenic | 40.0% | |
| TTACTGCCTGAATTGTACCT+TGG | - | chr1_2:10753702-10753721 | Msa0055640:intron | 40.0% | |
| !!! | TGATGGTGTTTTGATGCTGA+TGG | - | chr1_2:10753795-10753814 | Msa0055640:five_prime_UTR | 40.0% |
| TTGAGAGCGATCTGATCGAA+AGG | + | chr1_2:10751115-10751134 | None:intergenic | 45.0% | |
| GTACGTTCCTATGGCCAAAA+GGG | - | chr1_2:10751800-10751819 | Msa0055640:intron | 45.0% | |
| ! | TTAGTGTCCCTTTTGGCCAT+AGG | + | chr1_2:10751810-10751829 | None:intergenic | 45.0% |
| TTGTCGAGAAGAACGCTCAA+AGG | - | chr1_2:10751919-10751938 | Msa0055640:intron | 45.0% | |
| GAAAAGTAAGAGCTCGAAGC+AGG | + | chr1_2:10751966-10751985 | None:intergenic | 45.0% | |
| ! | CTTTTCATCACCACAGAGTG+TGG | - | chr1_2:10751980-10751999 | Msa0055640:intron | 45.0% |
| AGGGACTCATCAGATATACC+AGG | + | chr1_2:10752077-10752096 | None:intergenic | 45.0% | |
| TGAGATGCTAAGCCAACTTG+AGG | - | chr1_2:10752142-10752161 | Msa0055640:intron | 45.0% | |
| CTGAAGATAGTCTTCGGGAA+CGG | + | chr1_2:10752589-10752608 | None:intergenic | 45.0% | |
| TCGTGGTTGTTGAATCTCAC+AGG | - | chr1_2:10752640-10752659 | Msa0055640:intron | 45.0% | |
| CGTGGTTGTTGAATCTCACA+GGG | - | chr1_2:10752641-10752660 | Msa0055640:intron | 45.0% | |
| TTGGTCGTTCATTCAGTTGC+TGG | - | chr1_2:10753036-10753055 | Msa0055640:CDS | 45.0% | |
| AAGGCCAGCGAAAACAAAGT+TGG | - | chr1_2:10753608-10753627 | Msa0055640:intron | 45.0% | |
| !!! | TTGGCCAACTTTGTTTTCGC+TGG | + | chr1_2:10753615-10753634 | None:intergenic | 45.0% |
| AAGGGAAAACCACCTTCACT+TGG | + | chr1_2:10753662-10753681 | None:intergenic | 45.0% | |
| ! | AAGTGAAGGTGGTTTTCCCT+TGG | - | chr1_2:10753661-10753680 | Msa0055640:intron | 45.0% |
| ! | AGTGAAGGTGGTTTTCCCTT+GGG | - | chr1_2:10753662-10753681 | Msa0055640:intron | 45.0% |
| ! | GGTTTTCCCTTGGGATAGAT+AGG | - | chr1_2:10753671-10753690 | Msa0055640:intron | 45.0% |
| TTTCCCTTGGGATAGATAGG+TGG | - | chr1_2:10753674-10753693 | Msa0055640:intron | 45.0% | |
| AAGCCACCTATCTATCCCAA+GGG | + | chr1_2:10753680-10753699 | None:intergenic | 45.0% | |
| TGCTCACCAAGGTACAATTC+AGG | + | chr1_2:10753711-10753730 | None:intergenic | 45.0% | |
| TGTACCTTGGTGAGCAACTT+TGG | - | chr1_2:10753715-10753734 | Msa0055640:intron | 45.0% | |
| GTACCTTGGTGAGCAACTTT+GGG | - | chr1_2:10753716-10753735 | Msa0055640:intron | 45.0% | |
| TACCTTGGTGAGCAACTTTG+GGG | - | chr1_2:10753717-10753736 | Msa0055640:intron | 45.0% | |
| CGTACGTTCCTATGGCCAAA+AGG | - | chr1_2:10751799-10751818 | Msa0055640:intron | 50.0% | |
| TGTTGAATCTCACAGGGTGC+TGG | - | chr1_2:10752647-10752666 | Msa0055640:intron | 50.0% | |
| GATGATGCTGTTGACGCTCA+TGG | - | chr1_2:10753227-10753246 | Msa0055640:intron | 50.0% | |
| CTTCCAGAGTCGCTGGATAT+TGG | - | chr1_2:10753254-10753273 | Msa0055640:intron | 50.0% | |
| TCACCAATATCCAGCGACTC+TGG | + | chr1_2:10753260-10753279 | None:intergenic | 50.0% | |
| GCAGAATCAGCTGGCATAAC+AGG | + | chr1_2:10753293-10753312 | None:intergenic | 50.0% | |
| AGCAAAACAAGACACGGCTG+AGG | + | chr1_2:10753508-10753527 | None:intergenic | 50.0% | |
| CAAGCCACCTATCTATCCCA+AGG | + | chr1_2:10753681-10753700 | None:intergenic | 50.0% | |
| AACCCCAAAGTTGCTCACCA+AGG | + | chr1_2:10753722-10753741 | None:intergenic | 50.0% | |
| GGAACGTACGCAGCTGCATA+TGG | + | chr1_2:10751789-10751808 | None:intergenic | 55.0% | |
| TGCAGCTGCGTACGTTCCTA+TGG | - | chr1_2:10751791-10751810 | Msa0055640:intron | 55.0% | |
| GAACGCTCAAAGGCTCTCTC+CGG | - | chr1_2:10751929-10751948 | Msa0055640:intron | 55.0% | |
| AACGCTCAAAGGCTCTCTCC+GGG | - | chr1_2:10751930-10751949 | Msa0055640:intron | 55.0% | |
| !!! | GAAGCAGGCTGGTTTTTCCC+CGG | + | chr1_2:10751951-10751970 | None:intergenic | 55.0% |
| AGTAAGAGCTCGAAGCAGGC+TGG | + | chr1_2:10751962-10751981 | None:intergenic | 55.0% | |
| !! | AATCTCACAGGGTGCTGGCT+AGG | - | chr1_2:10752652-10752671 | Msa0055640:intron | 55.0% |
| TGGAAGTCTTCCAGAGTCGC+TGG | - | chr1_2:10753247-10753266 | Msa0055640:intron | 55.0% | |
| ACGCTCAAAGGCTCTCTCCG+GGG | - | chr1_2:10751931-10751950 | Msa0055640:intron | 60.0% | |
| GTCAGCTGTGCCACACTCTG+TGG | + | chr1_2:10751993-10752012 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 10751072 | 10753824 | 10751072 | ID=Msa0055640;Name=Msa0055640 |
| chr1_2 | mRNA | 10751072 | 10753824 | 10751072 | ID=Msa0055640-mRNA-1;Parent=Msa0055640;Name=Msa0055640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|0.5|0.33|3|454|184 |
| chr1_2 | exon | 10751072 | 10751672 | 10751072 | ID=Msa0055640-mRNA-1:exon:4081;Parent=Msa0055640-mRNA-1 |
| chr1_2 | exon | 10752733 | 10753186 | 10752733 | ID=Msa0055640-mRNA-1:exon:4080;Parent=Msa0055640-mRNA-1 |
| chr1_2 | exon | 10753720 | 10753824 | 10753720 | ID=Msa0055640-mRNA-1:exon:4079;Parent=Msa0055640-mRNA-1 |
| chr1_2 | five_prime_UTR | 10753720 | 10753824 | 10753720 | ID=Msa0055640-mRNA-1:five_prime_utr;Parent=Msa0055640-mRNA-1 |
| chr1_2 | five_prime_UTR | 10753141 | 10753186 | 10753141 | ID=Msa0055640-mRNA-1:five_prime_utr;Parent=Msa0055640-mRNA-1 |
| chr1_2 | CDS | 10752733 | 10753140 | 10752733 | ID=Msa0055640-mRNA-1:cds;Parent=Msa0055640-mRNA-1 |
| chr1_2 | CDS | 10751526 | 10751672 | 10751526 | ID=Msa0055640-mRNA-1:cds;Parent=Msa0055640-mRNA-1 |
| chr1_2 | three_prime_UTR | 10751072 | 10751525 | 10751072 | ID=Msa0055640-mRNA-1:three_prime_utr;Parent=Msa0055640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
