AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600590 MtrunA17_Chr4g0025621 98.056 360 7 0 1 360 1 360 0.0 718
Msa0600590 MtrunA17_Chr4g0025661 67.697 356 113 2 3 357 6 360 0.0 506
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600590 AT5G22140.1 64.972 354 123 1 4 357 12 364 2.70e-170 479
Msa0600590 AT3G44190.1 62.994 354 130 1 4 357 12 364 7.81e-169 475
Msa0600590 AT3G44190.2 63.344 311 113 1 47 357 1 310 1.91e-146 416
Msa0600590 AT5G22140.2 64.309 311 110 1 47 357 1 310 3.29e-146 416

Find 72 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCCATGGGCAAGTTTA+AGG 0.156955 4_2:-42213806 Msa0600590:CDS
TATCAATAGTTTCAGATTCT+TGG 0.196415 4_2:+42212136 None:intergenic
AAGTCTTTCGGTCCTTGTTT+TGG 0.248727 4_2:+42213602 None:intergenic
AATGTCTTTCTTGAAGCTTT+TGG 0.265463 4_2:+42212820 None:intergenic
AAATACTACTATAGGTATAT+TGG 0.304020 4_2:+42211803 None:intergenic
ACTCCTTCACAAATGAAAAT+AGG 0.306830 4_2:-42212741 Msa0600590:CDS
CTTCAAGAAAGACATTAAAA+TGG 0.321115 4_2:-42212813 Msa0600590:CDS
ACAATTGTTGGAAGGCTTCC+TGG 0.324524 4_2:-42212008 Msa0600590:CDS
TTCAGATTCAGTTATGTTGA+TGG 0.355713 4_2:+42213698 None:intergenic
GGAGCGAAAGAACGTAAATT+AGG 0.359944 4_2:-42212107 Msa0600590:CDS
TCAAGATTGCTAGAATATAT+TGG 0.361205 4_2:-42212844 Msa0600590:CDS
CCAAGTGAAACAATAGATAT+TGG 0.377879 4_2:+42212065 None:intergenic
TTTCCTTTCATGACAATTGT+TGG 0.378561 4_2:-42212020 Msa0600590:CDS
GATTCCATGGGCAAGTTTAA+GGG 0.378904 4_2:-42213805 Msa0600590:CDS
GAAAAGAAAGTTGTGATTAT+AGG 0.392457 4_2:-42214677 Msa0600590:CDS
ATTGCTTACCTCCTTTGTAT+TGG 0.393585 4_2:+42213577 None:intergenic
GATTATCTTGTTATCGCAAC+TGG 0.394119 4_2:-42213642 Msa0600590:CDS
TGATAAACAAATACTACTAT+AGG 0.398204 4_2:+42211795 None:intergenic
ATTATAGGAGGTGGTGTTGC+TGG 0.401428 4_2:-42214662 Msa0600590:CDS
TTTGTATTGGTCAAGTCTTT+CGG 0.415825 4_2:+42213590 None:intergenic
AGTCAGGAGATTTGTTTGTT+GGG 0.428035 4_2:-42211977 Msa0600590:CDS
AAGTCAGGAGATTTGTTTGT+TGG 0.437062 4_2:-42211978 Msa0600590:CDS
GGGAAAACAAGAAAGGGATT+AGG 0.446814 4_2:-42211957 Msa0600590:CDS
GATGAGTACTTGAGAGTGAA+GGG 0.449684 4_2:-42212583 Msa0600590:CDS
GTTTGTTGGGAAAACAAGAA+AGG 0.452444 4_2:-42211964 Msa0600590:CDS
AATCTGAAACTATTGATAGA+AGG 0.453316 4_2:-42212131 Msa0600590:CDS
TGCGATAACAAGATAATCAT+AGG 0.455029 4_2:+42213647 None:intergenic
TTTGTTGGGAAAACAAGAAA+GGG 0.460435 4_2:-42211963 Msa0600590:CDS
CCAATATCTATTGTTTCACT+TGG 0.467044 4_2:-42212065 Msa0600590:CDS
CTTCCTGGTATGATCAAGTC+AGG 0.474220 4_2:-42211993 Msa0600590:CDS
CATAGAGAATATTTCACAAA+AGG 0.477184 4_2:-42213741 Msa0600590:CDS
CATTAAAATGGCTTCAATCA+AGG 0.485208 4_2:-42212801 Msa0600590:CDS
AAAGTGACTATAGTGCATAA+AGG 0.487929 4_2:-42212868 Msa0600590:CDS
CTCTCAAGTACTCATCAACT+TGG 0.488733 4_2:+42212590 None:intergenic
CTTTCATGACAATTGTTGGA+AGG 0.497870 4_2:-42212016 Msa0600590:CDS
ATAGGTATATTGGAATTCAA+TGG 0.504093 4_2:+42211813 None:intergenic
ATTGTCGGTGGAGGTCCAAC+TGG 0.506007 4_2:-42212934 Msa0600590:CDS
GATTACTGTCCTTTCTGCAA+AGG 0.514545 4_2:+42213767 None:intergenic
TGTTATCGCAACTGGTCATA+CGG 0.523541 4_2:-42213634 Msa0600590:CDS
TGATGAGTACTTGAGAGTGA+AGG 0.525012 4_2:-42212584 Msa0600590:CDS
AGGACATATCAAACTTCAGT+TGG 0.525563 4_2:-42212721 Msa0600590:CDS
GATAATCATAGGCAATTTCA+CGG 0.532473 4_2:+42213658 None:intergenic
CCAAGCCATGCTGTAGCAAG+TGG 0.538403 4_2:+42212655 None:intergenic
ATGGGCAAGTTTAAGGGCAA+TGG 0.538869 4_2:-42213799 Msa0600590:CDS
TCTGAAGTCTTCACTGCTGA+TGG 0.538947 4_2:-42213681 Msa0600590:CDS
CCACTTGCTACAGCATGGCT+TGG 0.540166 4_2:-42212655 Msa0600590:CDS
GTTTCACTTGGAAGAAAACA+TGG 0.548086 4_2:-42212053 Msa0600590:CDS
CTTCCAACAATTGTCATGAA+AGG 0.551683 4_2:+42212017 None:intergenic
GGCAAGTTTAAGGGCAATGG+TGG 0.562939 4_2:-42213796 Msa0600590:CDS
TGGAGCCATCCTTTGCAGAA+AGG 0.564597 4_2:-42213776 Msa0600590:CDS
ACTGTCCTTTCTGCAAAGGA+TGG 0.565164 4_2:+42213771 None:intergenic
AAAGTTGTGATTATAGGAGG+TGG 0.565821 4_2:-42214671 Msa0600590:CDS
AAAGATGATTTGGATGGTCA+TGG 0.566723 4_2:-42212619 Msa0600590:CDS
AGTGAAACAATAGATATTGG+TGG 0.570389 4_2:+42212068 None:intergenic
AGTACTTGAGAGTGAAGGGA+AGG 0.576975 4_2:-42212579 Msa0600590:CDS
TCTCCTGACTTGATCATACC+AGG 0.577444 4_2:+42211990 None:intergenic
AAGAAAGTTGTGATTATAGG+AGG 0.578925 4_2:-42214674 Msa0600590:CDS
GCTGCTAGCTCGACACCAGT+TGG 0.587572 4_2:+42212919 None:intergenic
ATTGCCCTTAAACTTGCCCA+TGG 0.588671 4_2:+42213801 None:intergenic
TTTCTGAAAGATGATTTGGA+TGG 0.601708 4_2:-42212625 Msa0600590:CDS
CTGAAACTATTGATAGAAGG+AGG 0.602874 4_2:-42212128 Msa0600590:CDS
CGGAATCTATCCCCAAAACA+AGG 0.611323 4_2:-42213614 Msa0600590:CDS
AACATACACAAATAATAACT+AGG 0.612632 4_2:+42211868 None:intergenic
ATGATTTGGATGGTCATGGA+AGG 0.615413 4_2:-42212615 Msa0600590:CDS
ACGTAAATTAGGTACTTACA+AGG 0.616980 4_2:-42212096 Msa0600590:CDS
CGAGCTAGCAGCAGAGATTG+CGG 0.623893 4_2:-42212908 Msa0600590:CDS
GGAAACCACTTGCTACAGCA+TGG 0.653025 4_2:-42212660 Msa0600590:CDS
GAAAGACTTGACCAATACAA+AGG 0.653500 4_2:-42213588 Msa0600590:CDS
TGATGGCACTTGATATAACA+AGG 0.655923 4_2:+42213715 None:intergenic
AAACAAGGAGTGTATGCACA+AGG 0.668753 4_2:-42212176 Msa0600590:CDS
AGACTTGACCAATACAAAGG+AGG 0.681103 4_2:-42213585 Msa0600590:intron
ATGTTACAGGAAATAAAACA+AGG 0.698106 4_2:-42212191 Msa0600590:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAAAGATAAAATAAAAA+TGG - chr4_2:42211808-42211827 Msa0600590:three_prime_UTR 10.0%
!! AAAAAAGAAAAAAAAGATAA+TGG + chr4_2:42211966-42211985 None:intergenic 10.0%
!!! AATTAAGATTTTTTAACATT+AGG + chr4_2:42214586-42214605 None:intergenic 10.0%
!!! TTTTTCTGTTTAATTCAATT+TGG - chr4_2:42211986-42212005 Msa0600590:CDS 15.0%
!! AAAAAATCTGTATTGAAATA+TGG + chr4_2:42213314-42213333 None:intergenic 15.0%
!!! GAATTTCATATATCTTTTAT+TGG + chr4_2:42214007-42214026 None:intergenic 15.0%
!!! ATCAAAATTTTGTATTAACT+AGG + chr4_2:42214283-42214302 None:intergenic 15.0%
!! AAAATTGAATTATATGTTAC+AGG - chr4_2:42214306-42214325 Msa0600590:intron 15.0%
!! CAAAGATAAAATAAAAATGG+TGG - chr4_2:42211811-42211830 Msa0600590:three_prime_UTR 20.0%
!!! TGTGTCAAATTTAATTTGAA+TGG - chr4_2:42212029-42212048 Msa0600590:CDS 20.0%
!! GTAGTTAAAATAATATCGAT+TGG - chr4_2:42212051-42212070 Msa0600590:CDS 20.0%
!!! CGATAATATAATTGTTTTAG+AGG + chr4_2:42212501-42212520 None:intergenic 20.0%
!! AATTCTAGCAATTAATAGTA+TGG + chr4_2:42213222-42213241 None:intergenic 20.0%
!! TACTATTAATTGCTAGAATT+TGG - chr4_2:42213222-42213241 Msa0600590:intron 20.0%
!!! ATACACATTTTCTATGTATA+GGG - chr4_2:42213829-42213848 Msa0600590:intron 20.0%
!! AACATACACAAATAATAACT+AGG + chr4_2:42214645-42214664 None:intergenic 20.0%
!! AAATACTACTATAGGTATAT+TGG + chr4_2:42214710-42214729 None:intergenic 20.0%
!! TGATAAACAAATACTACTAT+AGG + chr4_2:42214718-42214737 None:intergenic 20.0%
! GAAAAGAAAGTTGTGATTAT+AGG - chr4_2:42211833-42211852 Msa0600590:three_prime_UTR 25.0%
!! TTTGGTATGCTTGATTTTTA+TGG - chr4_2:42212004-42212023 Msa0600590:CDS 25.0%
! ATGCAGAGTGATTATTTATT+TGG - chr4_2:42212209-42212228 Msa0600590:intron 25.0%
!!! ATGCTGATGGTTTTAAATTT+AGG - chr4_2:42212390-42212409 Msa0600590:intron 25.0%
! CAATTGCAGTCATAATATAA+AGG + chr4_2:42212536-42212555 None:intergenic 25.0%
!!! CTTTGGTACTTTTTAAATTG+CGG + chr4_2:42212569-42212588 None:intergenic 25.0%
!! CTTTTGTGAAATATTCTCTA+TGG + chr4_2:42212771-42212790 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - chr4_2:42212769-42212788 Msa0600590:CDS 25.0%
! AACTGATCAAATATCAATCA+GGG - chr4_2:42213000-42213019 Msa0600590:intron 25.0%
! TGTGATTTCTTACAATATCA+AGG + chr4_2:42213051-42213070 None:intergenic 25.0%
! TTAAACACATCAATGATTGT+TGG + chr4_2:42213390-42213409 None:intergenic 25.0%
! TCAAGATTGCTAGAATATAT+TGG - chr4_2:42213666-42213685 Msa0600590:CDS 25.0%
! CTTCAAGAAAGACATTAAAA+TGG - chr4_2:42213697-42213716 Msa0600590:CDS 25.0%
!! GATACACATTTTCTATGTAT+AGG - chr4_2:42213828-42213847 Msa0600590:intron 25.0%
!!! AACTTTTCTGAAAGATGATT+TGG - chr4_2:42213881-42213900 Msa0600590:intron 25.0%
! GTATTAAAACCTTTCACTTT+CGG - chr4_2:42214243-42214262 Msa0600590:intron 25.0%
! ATGTTACAGGAAATAAAACA+AGG - chr4_2:42214319-42214338 Msa0600590:intron 25.0%
! TATCAATAGTTTCAGATTCT+TGG + chr4_2:42214377-42214396 None:intergenic 25.0%
!! AATCTGAAACTATTGATAGA+AGG - chr4_2:42214379-42214398 Msa0600590:intron 25.0%
!! GTTCATTTTGTGTTTTCTTT+CGG - chr4_2:42214668-42214687 Msa0600590:CDS 25.0%
! ATAGGTATATTGGAATTCAA+TGG + chr4_2:42214700-42214719 None:intergenic 25.0%
!!! ACTTTTGTAAGTTTTGAGAA+TGG - chr4_2:42214743-42214762 Msa0600590:five_prime_UTR 25.0%
AAGAAAGTTGTGATTATAGG+AGG - chr4_2:42211836-42211855 Msa0600590:three_prime_UTR 30.0%
!!! GATGTTGTATAGTTTTAGCA+AGG + chr4_2:42211880-42211899 None:intergenic 30.0%
AAACAAGTAAAGACTGACTA+AGG + chr4_2:42212110-42212129 None:intergenic 30.0%
!! TAATAGTCAAGATTTTGGTC+GGG + chr4_2:42212133-42212152 None:intergenic 30.0%
!! CTAATAGTCAAGATTTTGGT+CGG + chr4_2:42212134-42212153 None:intergenic 30.0%
GACCAAAATCTTGACTATTA+GGG - chr4_2:42212133-42212152 Msa0600590:CDS 30.0%
ATCCTTGTCTATATATACAG+TGG + chr4_2:42212272-42212291 None:intergenic 30.0%
! TGCTACGAACTTTTATATTG+TGG - chr4_2:42212431-42212450 Msa0600590:intron 30.0%
TGGTAAAATGATGACAAATG+TGG - chr4_2:42212451-42212470 Msa0600590:intron 30.0%
CGATCAAACATAAAAGTCTT+TGG + chr4_2:42212586-42212605 None:intergenic 30.0%
TTTATGTTTGATCGTAGTCA+TGG - chr4_2:42212592-42212611 Msa0600590:CDS 30.0%
TAATAAGAGTTGTTGAACAC+AGG - chr4_2:42212668-42212687 Msa0600590:CDS 30.0%
TTCAGATTCAGTTATGTTGA+TGG + chr4_2:42212815-42212834 None:intergenic 30.0%
GATAATCATAGGCAATTTCA+CGG + chr4_2:42212855-42212874 None:intergenic 30.0%
TGCGATAACAAGATAATCAT+AGG + chr4_2:42212866-42212885 None:intergenic 30.0%
! TTTGTATTGGTCAAGTCTTT+CGG + chr4_2:42212923-42212942 None:intergenic 30.0%
CAACTGATCAAATATCAATC+AGG - chr4_2:42212999-42213018 Msa0600590:intron 30.0%
TATAGAGAGTCTTGAAACAA+AGG + chr4_2:42213168-42213187 None:intergenic 30.0%
TCTAGCAATTAATAGTATGG+TGG + chr4_2:42213219-42213238 None:intergenic 30.0%
TGATTGTGTGAGATTATTGA+TGG + chr4_2:42213256-42213275 None:intergenic 30.0%
ATAAAACCGAACTTGAAATC+CGG - chr4_2:42213348-42213367 Msa0600590:intron 30.0%
AATGATTGTTGGATTGAGAT+TGG + chr4_2:42213379-42213398 None:intergenic 30.0%
CTTGACATAAATTAGGCAAT+TGG + chr4_2:42213453-42213472 None:intergenic 30.0%
CACACAACTTGACATAAATT+AGG + chr4_2:42213460-42213479 None:intergenic 30.0%
!! TAAATTCCTTTTGAGTGATG+AGG - chr4_2:42213496-42213515 Msa0600590:intron 30.0%
!!! ACTATAGTCACTTTTTTGTC+AGG + chr4_2:42213636-42213655 None:intergenic 30.0%
AAAGTGACTATAGTGCATAA+AGG - chr4_2:42213642-42213661 Msa0600590:CDS 30.0%
! AATGTCTTTCTTGAAGCTTT+TGG + chr4_2:42213693-42213712 None:intergenic 30.0%
CATTAAAATGGCTTCAATCA+AGG - chr4_2:42213709-42213728 Msa0600590:CDS 30.0%
ACTCCTTCACAAATGAAAAT+AGG - chr4_2:42213769-42213788 Msa0600590:CDS 30.0%
! TGTCCTATTTTCATTTGTGA+AGG + chr4_2:42213775-42213794 None:intergenic 30.0%
! TTTCTGAAAGATGATTTGGA+TGG - chr4_2:42213885-42213904 Msa0600590:intron 30.0%
ACGTAAATTAGGTACTTACA+AGG - chr4_2:42214414-42214433 Msa0600590:intron 30.0%
AGTGAAACAATAGATATTGG+TGG + chr4_2:42214445-42214464 None:intergenic 30.0%
CCAAGTGAAACAATAGATAT+TGG + chr4_2:42214448-42214467 None:intergenic 30.0%
CCAATATCTATTGTTTCACT+TGG - chr4_2:42214445-42214464 Msa0600590:intron 30.0%
TTTCCTTTCATGACAATTGT+TGG - chr4_2:42214490-42214509 Msa0600590:intron 30.0%
TTTGTTGGGAAAACAAGAAA+GGG - chr4_2:42214547-42214566 Msa0600590:intron 30.0%
AAAGTTGTGATTATAGGAGG+TGG - chr4_2:42211839-42211858 Msa0600590:three_prime_UTR 35.0%
!!! ACTAAGGATTGTTTTGGTCA+GGG + chr4_2:42212094-42212113 None:intergenic 35.0%
! AGACTGACTAAGGATTGTTT+TGG + chr4_2:42212100-42212119 None:intergenic 35.0%
CGACCAAAATCTTGACTATT+AGG - chr4_2:42212132-42212151 Msa0600590:CDS 35.0%
! GACCCTAATAGTCAAGATTT+TGG + chr4_2:42212138-42212157 None:intergenic 35.0%
AGCCACTGTATATATAGACA+AGG - chr4_2:42212267-42212286 Msa0600590:intron 35.0%
TAGTTTCATTACGATGCTGA+TGG - chr4_2:42212377-42212396 Msa0600590:intron 35.0%
TACACAACAAGTTTCGTGTA+CGG + chr4_2:42212632-42212651 None:intergenic 35.0%
!!! AGGAGTATTTTGAGATTCCA+TGG - chr4_2:42212692-42212711 Msa0600590:CDS 35.0%
!!! GGAGTATTTTGAGATTCCAT+GGG - chr4_2:42212693-42212712 Msa0600590:CDS 35.0%
TGATGGCACTTGATATAACA+AGG + chr4_2:42212798-42212817 None:intergenic 35.0%
! GATTATCTTGTTATCGCAAC+TGG - chr4_2:42212868-42212887 Msa0600590:CDS 35.0%
GAAAGACTTGACCAATACAA+AGG - chr4_2:42212922-42212941 Msa0600590:CDS 35.0%
ATTGCTTACCTCCTTTGTAT+TGG + chr4_2:42212936-42212955 None:intergenic 35.0%
AGGTAAGCAATGATACTTAG+TGG - chr4_2:42212945-42212964 Msa0600590:CDS 35.0%
ATACTTAGTGGTAACTCTCT+AGG - chr4_2:42212957-42212976 Msa0600590:CDS 35.0%
AAACCACAAAACAACTGCAA+TGG + chr4_2:42213097-42213116 None:intergenic 35.0%
! TGTGTGAGATTATTGATGGT+AGG + chr4_2:42213252-42213271 None:intergenic 35.0%
ATTGTTGGATTGAGATTGGA+CGG + chr4_2:42213375-42213394 None:intergenic 35.0%
AGGCAATTGGAATTCGAAAT+CGG + chr4_2:42213440-42213459 None:intergenic 35.0%
AGAATTCCTCATCACTCAAA+AGG + chr4_2:42213505-42213524 None:intergenic 35.0%
AGGACATATCAAACTTCAGT+TGG - chr4_2:42213789-42213808 Msa0600590:CDS 35.0%
! AAAGATGATTTGGATGGTCA+TGG - chr4_2:42213891-42213910 Msa0600590:intron 35.0%
GCGTTATAGCATTGTATCAT+AGG - chr4_2:42214143-42214162 Msa0600590:intron 35.0%
! AACTGATATTTTCCGCTATC+TGG - chr4_2:42214177-42214196 Msa0600590:intron 35.0%
! ACTGATATTTTCCGCTATCT+GGG - chr4_2:42214178-42214197 Msa0600590:intron 35.0%
!!! ACTGTTATTTTCCGCTATCT+GGG + chr4_2:42214225-42214244 None:intergenic 35.0%
!!! TACTGTTATTTTCCGCTATC+TGG + chr4_2:42214226-42214245 None:intergenic 35.0%
GTGAAAATACCGAAAGTGAA+AGG + chr4_2:42214255-42214274 None:intergenic 35.0%
CTGAAACTATTGATAGAAGG+AGG - chr4_2:42214382-42214401 Msa0600590:intron 35.0%
GTTTCACTTGGAAGAAAACA+TGG - chr4_2:42214457-42214476 Msa0600590:intron 35.0%
CTTCCAACAATTGTCATGAA+AGG + chr4_2:42214496-42214515 None:intergenic 35.0%
CTTTCATGACAATTGTTGGA+AGG - chr4_2:42214494-42214513 Msa0600590:intron 35.0%
! AAGTCAGGAGATTTGTTTGT+TGG - chr4_2:42214532-42214551 Msa0600590:intron 35.0%
! AGTCAGGAGATTTGTTTGTT+GGG - chr4_2:42214533-42214552 Msa0600590:intron 35.0%
! GTTTGTTGGGAAAACAAGAA+AGG - chr4_2:42214546-42214565 Msa0600590:intron 35.0%
!!! GACTAAGGATTGTTTTGGTC+AGG + chr4_2:42212095-42212114 None:intergenic 40.0%
TAGAATCGTGATGTGTGACT+AGG + chr4_2:42212309-42212328 None:intergenic 40.0%
GAAGACCATATTCGACAACA+CGG + chr4_2:42212346-42212365 None:intergenic 40.0%
TATGACTGCAATTGCAGTCA+TGG - chr4_2:42212542-42212561 Msa0600590:CDS 40.0%
AAGAGTTGTTGAACACAGGA+AGG - chr4_2:42212672-42212691 Msa0600590:CDS 40.0%
AGATTCCATGGGCAAGTTTA+AGG - chr4_2:42212704-42212723 Msa0600590:CDS 40.0%
GATTCCATGGGCAAGTTTAA+GGG - chr4_2:42212705-42212724 Msa0600590:CDS 40.0%
GATTACTGTCCTTTCTGCAA+AGG + chr4_2:42212746-42212765 None:intergenic 40.0%
TGTTATCGCAACTGGTCATA+CGG - chr4_2:42212876-42212895 Msa0600590:CDS 40.0%
!!! AGTCTTTCGGTCCTTGTTTT+GGG + chr4_2:42212910-42212929 None:intergenic 40.0%
!! AAGTCTTTCGGTCCTTGTTT+TGG + chr4_2:42212911-42212930 None:intergenic 40.0%
AGACTTGACCAATACAAAGG+AGG - chr4_2:42212925-42212944 Msa0600590:CDS 40.0%
ATCTCACACAATCAGCACAA+TGG - chr4_2:42213262-42213281 Msa0600590:intron 40.0%
ACAGTTCAATCTCGAGCAAA+CGG + chr4_2:42213291-42213310 None:intergenic 40.0%
!!! GCACGTTCAGTTTTGATTGT+CGG - chr4_2:42213561-42213580 Msa0600590:intron 40.0%
! ATGATTTGGATGGTCATGGA+AGG - chr4_2:42213895-42213914 Msa0600590:intron 40.0%
CTCTCAAGTACTCATCAACT+TGG + chr4_2:42213923-42213942 None:intergenic 40.0%
TGATGAGTACTTGAGAGTGA+AGG - chr4_2:42213926-42213945 Msa0600590:intron 40.0%
GATGAGTACTTGAGAGTGAA+GGG - chr4_2:42213927-42213946 Msa0600590:intron 40.0%
! AGGAACAACGTTTTCGCTAT+AGG - chr4_2:42213951-42213970 Msa0600590:intron 40.0%
CACTAACTGACAACAATGCA+TGG + chr4_2:42214038-42214057 None:intergenic 40.0%
CATGCATTGTTGTCAGTTAG+TGG - chr4_2:42214036-42214055 Msa0600590:intron 40.0%
TCAGTTAGTGGCTATAGTAG+CGG - chr4_2:42214048-42214067 Msa0600590:intron 40.0%
GATACGCTATTTAGCACAGA+TGG - chr4_2:42214098-42214117 Msa0600590:intron 40.0%
! ATCTGGGATTGACAATTGAC+AGG + chr4_2:42214209-42214228 None:intergenic 40.0%
CAATTGTCAATCCCAGATAG+CGG - chr4_2:42214211-42214230 Msa0600590:intron 40.0%
! AAACAAGGAGTGTATGCACA+AGG - chr4_2:42214334-42214353 Msa0600590:intron 40.0%
GGAGCGAAAGAACGTAAATT+AGG - chr4_2:42214403-42214422 Msa0600590:intron 40.0%
GGGAAAACAAGAAAGGGATT+AGG - chr4_2:42214553-42214572 Msa0600590:intron 40.0%
!! ATTATAGGAGGTGGTGTTGC+TGG - chr4_2:42211848-42211867 Msa0600590:three_prime_UTR 45.0%
AGAGAGAAAGAGAGAGCTCA+CGG + chr4_2:42211926-42211945 None:intergenic 45.0%
!!! GGATTGTTTTGGTCAGGGTT+TGG + chr4_2:42212089-42212108 None:intergenic 45.0%
GAGAACCGTGTTGTCGAATA+TGG - chr4_2:42212338-42212357 Msa0600590:intron 45.0%
ATTGCCCTTAAACTTGCCCA+TGG + chr4_2:42212712-42212731 None:intergenic 45.0%
ATGGGCAAGTTTAAGGGCAA+TGG - chr4_2:42212711-42212730 Msa0600590:CDS 45.0%
ACTGTCCTTTCTGCAAAGGA+TGG + chr4_2:42212742-42212761 None:intergenic 45.0%
! TCTGAAGTCTTCACTGCTGA+TGG - chr4_2:42212829-42212848 Msa0600590:CDS 45.0%
CGGAATCTATCCCCAAAACA+AGG - chr4_2:42212896-42212915 Msa0600590:CDS 45.0%
!!! GTCTTTCGGTCCTTGTTTTG+GGG + chr4_2:42212909-42212928 None:intergenic 45.0%
CCACAAAACAACTGCAATGG+AGG + chr4_2:42213094-42213113 None:intergenic 45.0%
!! CCTCCATTGCAGTTGTTTTG+TGG - chr4_2:42213091-42213110 Msa0600590:intron 45.0%
CGATCTTGATTGCAGCATCA+AGG + chr4_2:42213135-42213154 None:intergenic 45.0%
TCACACAATCAGCACAATGG+TGG - chr4_2:42213265-42213284 Msa0600590:intron 45.0%
!!! CGTTCAGTTTTGATTGTCGG+TGG - chr4_2:42213564-42213583 Msa0600590:intron 45.0%
!!! TCAGTTTTGATTGTCGGTGG+AGG - chr4_2:42213567-42213586 Msa0600590:intron 45.0%
AGTACTTGAGAGTGAAGGGA+AGG - chr4_2:42213931-42213950 Msa0600590:intron 45.0%
CTGTGCTAAATAGCGTATCG+CGG + chr4_2:42214097-42214116 None:intergenic 45.0%
CACAGATGGTTTCCAGATAG+TGG - chr4_2:42214112-42214131 Msa0600590:intron 45.0%
ACGCTGCTTAAACCACTATC+TGG + chr4_2:42214127-42214146 None:intergenic 45.0%
ACAATTGTTGGAAGGCTTCC+TGG - chr4_2:42214502-42214521 Msa0600590:intron 45.0%
CTTCCTGGTATGATCAAGTC+AGG - chr4_2:42214517-42214536 Msa0600590:intron 45.0%
! TCTCCTGACTTGATCATACC+AGG + chr4_2:42214523-42214542 None:intergenic 45.0%
GGCAAGTTTAAGGGCAATGG+TGG - chr4_2:42212714-42212733 Msa0600590:CDS 50.0%
TGGAGCCATCCTTTGCAGAA+AGG - chr4_2:42212734-42212753 Msa0600590:CDS 50.0%
TCAATCAGGGTTTCAAGCCG+TGG - chr4_2:42213013-42213032 Msa0600590:intron 50.0%
CAAGGATTGCTACACGACCA+CGG + chr4_2:42213033-42213052 None:intergenic 50.0%
!! GACGGTCCGGATTTCAAGTT+CGG + chr4_2:42213357-42213376 None:intergenic 50.0%
TGGATTGAGATTGGACGGTC+CGG + chr4_2:42213370-42213389 None:intergenic 50.0%
! GGAAACCACTTGCTACAGCA+TGG - chr4_2:42213850-42213869 Msa0600590:intron 50.0%
GACAGGTCAATCCCAGATAG+CGG + chr4_2:42214192-42214211 None:intergenic 50.0%
ATTGTCGGTGGAGGTCCAAC+TGG - chr4_2:42213576-42213595 Msa0600590:intron 55.0%
CGAGCTAGCAGCAGAGATTG+CGG - chr4_2:42213602-42213621 Msa0600590:CDS 55.0%
CCAAGCCATGCTGTAGCAAG+TGG + chr4_2:42213858-42213877 None:intergenic 55.0%
! CCACTTGCTACAGCATGGCT+TGG - chr4_2:42213855-42213874 Msa0600590:intron 55.0%
GCTGCTAGCTCGACACCAGT+TGG + chr4_2:42213594-42213613 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 42211765 42214767 42211765 ID=Msa0600590;Name=Msa0600590
chr4_2 mRNA 42211765 42214767 42211765 ID=Msa0600590-mRNA-1;Parent=Msa0600590;Name=Msa0600590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|1|1|4|164|360
chr4_2 exon 42211765 42212204 42211765 ID=Msa0600590-mRNA-1:exon:9172;Parent=Msa0600590-mRNA-1
chr4_2 exon 42212540 42212991 42212540 ID=Msa0600590-mRNA-1:exon:9171;Parent=Msa0600590-mRNA-1
chr4_2 exon 42213586 42213842 42213586 ID=Msa0600590-mRNA-1:exon:9170;Parent=Msa0600590-mRNA-1
chr4_2 exon 42214608 42214767 42214608 ID=Msa0600590-mRNA-1:exon:9169;Parent=Msa0600590-mRNA-1
chr4_2 five_prime_UTR 42214706 42214767 42214706 ID=Msa0600590-mRNA-1:five_prime_utr;Parent=Msa0600590-mRNA-1
chr4_2 CDS 42214608 42214705 42214608 ID=Msa0600590-mRNA-1:cds;Parent=Msa0600590-mRNA-1
chr4_2 CDS 42213586 42213842 42213586 ID=Msa0600590-mRNA-1:cds;Parent=Msa0600590-mRNA-1
chr4_2 CDS 42212540 42212991 42212540 ID=Msa0600590-mRNA-1:cds;Parent=Msa0600590-mRNA-1
chr4_2 CDS 42211929 42212204 42211929 ID=Msa0600590-mRNA-1:cds;Parent=Msa0600590-mRNA-1
chr4_2 three_prime_UTR 42211765 42211928 42211765 ID=Msa0600590-mRNA-1:three_prime_utr;Parent=Msa0600590-mRNA-1
Gene Sequence

>Msa0600590

ATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATACAACATCATGCTAATGTCACTCTTATTGATCCGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTAAGGGCAATGGTGGAGCCATCCTTTGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTATCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGAAAATACAAAGATAAAATCAGCACGTTCAGTTTTGATTGTCGGTGGAGGTCCAACTGGTGTCGAGCTAGCAGCAGAGATTGCGGTTGATTTTCCTGACAAAAAAGTGACTATAGTGCATAAAGGATCAAGATTGCTAGAATATATTGGACCAAAAGCTTCAAGAAAGACATTAAAATGGCTTCAATCAAGGAAAGTTGATGTGAAATTTGAACAATCAGTTGACTTAGACTCCTTCACAAATGAAAATAGGACATATCAAACTTCAGTTGGAGAGAGTATAGAAGCAGATACACATTTTCTATGTATAGGGAAACCACTTGCTACAGCATGGCTTGGTGAAACTTTTCTGAAAGATGATTTGGATGGTCATGGAAGGATCCAAGTTGATGAGTACTTGAGAGTGAAGGGAAGGAACAACGTTTTCGCTATAGGAGACATTACAGATATTCAAGAAATAAAACAAGGAGTGTATGCACAAGGTCATGCTCAATTAGTTGCCAAGAATCTGAAACTATTGATAGAAGGAGGAGCGAAAGAACGTAAATTAGGTACTTACAAGGCACAACCACCAATATCTATTGTTTCACTTGGAAGAAAACATGGTGTTGCACAATTTCCTTTCATGACAATTGTTGGAAGGCTTCCTGGTATGATCAAGTCAGGAGATTTGTTTGTTGGGAAAACAAGAAAGGGATTAGGACTTGAACCTAATGTTAAAAAATCTTAA

Protein sequence

>Msa0600590

MVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGREIAYDYLVIATGHTESIPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGPKASRKTLKWLQSRKVDVKFEQSVDLDSFTNENRTYQTSVGESIEADTHFLCIGKPLATAWLGETFLKDDLDGHGRIQVDEYLRVKGRNNVFAIGDITDIQEIKQGVYAQGHAQLVAKNLKLLIEGGAKERKLGTYKAQPPISIVSLGRKHGVAQFPFMTIVGRLPGMIKSGDLFVGKTRKGLGLEPNVKKS*