Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315930 | XP_013462769.1 | 98.688 | 381 | 5 | 0 | 1 | 381 | 1 | 381 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315930 | sp|Q4TU14|RHF1A_ARATH | 44.134 | 358 | 141 | 10 | 30 | 358 | 38 | 365 | 2.41e-72 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046660 | Msa0315930 | 0.812129 | 4.951037e-51 | -8.615850e-47 |
| Msa0090770 | Msa0315930 | 0.832101 | 1.145741e-55 | -8.615850e-47 |
| Msa0138390 | Msa0315930 | 0.809765 | 1.609308e-50 | -8.615850e-47 |
| Msa0167210 | Msa0315930 | 0.833386 | 5.493234e-56 | -8.615850e-47 |
| Msa0183640 | Msa0315930 | 0.829174 | 5.967510e-55 | -8.615850e-47 |
| Msa0196360 | Msa0315930 | 0.948355 | 1.112970e-106 | -8.615850e-47 |
| Msa0218530 | Msa0315930 | 0.808488 | 3.021559e-50 | -8.615850e-47 |
| Msa0218650 | Msa0315930 | 0.800947 | 1.134924e-48 | -8.615850e-47 |
| Msa0238250 | Msa0315930 | 0.921807 | 2.226794e-88 | -8.615850e-47 |
| Msa0240450 | Msa0315930 | 0.806047 | 9.941506e-50 | -8.615850e-47 |
| Msa0260950 | Msa0315930 | 0.817869 | 2.636778e-52 | -8.615850e-47 |
| Msa0275680 | Msa0315930 | 0.817609 | 3.017265e-52 | -8.615850e-47 |
| Msa0315930 | Msa0318250 | -0.807674 | 4.503106e-50 | -8.615850e-47 |
| Msa0315930 | Msa0376450 | 0.852995 | 3.201045e-61 | -8.615850e-47 |
| Msa0315930 | Msa0425120 | 0.842506 | 2.480386e-58 | -8.615850e-47 |
| Msa0315930 | Msa0430620 | -0.807916 | 4.000009e-50 | -8.615850e-47 |
| Msa0315930 | Msa0465790 | -0.805641 | 1.210115e-49 | -8.615850e-47 |
| Msa0315930 | Msa0471720 | 0.853010 | 3.169331e-61 | -8.615850e-47 |
| Msa0315930 | Msa0472740 | -0.821214 | 4.548240e-53 | -8.615850e-47 |
| Msa0315930 | Msa0516510 | 0.855228 | 7.262645e-62 | -8.615850e-47 |
| Msa0315930 | Msa0553220 | 0.800981 | 1.116911e-48 | -8.615850e-47 |
| Msa0315930 | Msa0607340 | 0.839497 | 1.529293e-57 | -8.615850e-47 |
| Msa0315930 | Msa0717920 | 0.828223 | 1.013217e-54 | -8.615850e-47 |
| Msa0315930 | Msa0729290 | 0.817224 | 3.684674e-52 | -8.615850e-47 |
| Msa0315930 | Msa0807650 | 0.808434 | 3.103041e-50 | -8.615850e-47 |
| Msa0315930 | Msa0813320 | 0.828724 | 7.667996e-55 | -8.615850e-47 |
| Msa0315930 | Msa0865990 | 0.815151 | 1.070866e-51 | -8.615850e-47 |
| Msa0315930 | Msa0867050 | 0.820172 | 7.892059e-53 | -8.615850e-47 |
| Msa0315930 | Msa0967650 | 0.853336 | 2.555764e-61 | -8.615850e-47 |
| Msa0315930 | Msa1072460 | 0.806574 | 7.700493e-50 | -8.615850e-47 |
| Msa0315930 | Msa1119300 | 0.811034 | 8.568024e-51 | -8.615850e-47 |
| Msa0315930 | Msa1212760 | -0.802568 | 5.275580e-49 | -8.615850e-47 |
| Msa0315930 | Msa1260130 | -0.807341 | 5.300092e-50 | -8.615850e-47 |
| Msa0315930 | Msa1307660 | 0.810418 | 1.164328e-50 | -8.615850e-47 |
| Msa0315930 | Msa1365700 | 0.804539 | 2.058333e-49 | -8.615850e-47 |
| Msa0315930 | Msa1396750 | 0.841101 | 5.829015e-58 | -8.615850e-47 |
| Msa0315930 | Msa1410430 | 0.816406 | 5.620663e-52 | -8.615850e-47 |
| Msa0315930 | Msa1449250 | 0.818133 | 2.297739e-52 | -8.615850e-47 |
| Msa0315930 | Msa1453780 | 0.827366 | 1.627672e-54 | -8.615850e-47 |
| Msa0315930 | Msa1454910 | 0.802218 | 6.227938e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315930 | MtrunA17_Chr2g0287991 | 98.688 | 381 | 5 | 0 | 1 | 381 | 1 | 381 | 0.0 | 768 |
| Msa0315930 | MtrunA17_Chr2g0322261 | 38.746 | 351 | 183 | 8 | 32 | 352 | 31 | 379 | 6.33e-59 | 196 |
| Msa0315930 | MtrunA17_Chr7g0267851 | 34.936 | 312 | 150 | 10 | 4 | 286 | 10 | 297 | 1.37e-42 | 150 |
| Msa0315930 | MtrunA17_Chr8g0348651 | 54.167 | 48 | 22 | 0 | 35 | 82 | 137 | 184 | 1.72e-12 | 65.9 |
| Msa0315930 | MtrunA17_Chr8g0387191 | 47.170 | 53 | 28 | 0 | 35 | 87 | 153 | 205 | 7.44e-12 | 64.3 |
| Msa0315930 | MtrunA17_Chr7g0248061 | 52.083 | 48 | 23 | 0 | 35 | 82 | 137 | 184 | 2.42e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315930 | AT4G14220.1 | 44.134 | 358 | 141 | 10 | 30 | 358 | 38 | 365 | 2.45e-73 | 233 |
| Msa0315930 | AT5G22000.2 | 43.234 | 303 | 139 | 9 | 32 | 309 | 27 | 321 | 2.50e-60 | 199 |
| Msa0315930 | AT5G22000.3 | 43.234 | 303 | 139 | 9 | 32 | 309 | 27 | 321 | 2.87e-60 | 199 |
| Msa0315930 | AT5G22000.1 | 43.234 | 303 | 139 | 9 | 32 | 309 | 27 | 321 | 2.87e-60 | 199 |
| Msa0315930 | AT5G22000.4 | 38.372 | 258 | 126 | 9 | 77 | 309 | 1 | 250 | 2.60e-32 | 124 |
| Msa0315930 | AT4G00335.2 | 47.273 | 55 | 29 | 0 | 32 | 86 | 133 | 187 | 9.92e-12 | 63.9 |
| Msa0315930 | AT4G00335.1 | 47.273 | 55 | 29 | 0 | 32 | 86 | 133 | 187 | 9.92e-12 | 63.9 |
| Msa0315930 | AT4G00335.3 | 47.273 | 55 | 29 | 0 | 32 | 86 | 133 | 187 | 9.92e-12 | 63.9 |
| Msa0315930 | AT5G41350.1 | 45.833 | 48 | 26 | 0 | 35 | 82 | 158 | 205 | 8.39e-11 | 61.6 |
| Msa0315930 | AT5G41350.3 | 45.833 | 48 | 26 | 0 | 35 | 82 | 158 | 205 | 8.39e-11 | 61.6 |
| Msa0315930 | AT5G41350.2 | 45.833 | 48 | 26 | 0 | 35 | 82 | 183 | 230 | 9.18e-11 | 62.0 |
Find 121 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTCTGGGCCTGTATC+TGG | 0.093435 | 2_4:-12567297 | Msa0315930:CDS |
| TGAAATAATTTACTAGATTT+TGG | 0.099497 | 2_4:-12565339 | Msa0315930:three_prime_UTR |
| GAGCCAGTAACTTCTCTTTA+AGG | 0.167971 | 2_4:+12566485 | None:intergenic |
| ATATGCTTTATTTCTTTGTT+AGG | 0.262791 | 2_4:-12569331 | Msa0315930:five_prime_UTR |
| CTCTAATTCCTGTCCGTAAT+GGG | 0.265206 | 2_4:-12566345 | Msa0315930:CDS |
| CTATGCTGATTTGTTCAAAA+AGG | 0.276247 | 2_4:-12565538 | Msa0315930:three_prime_UTR |
| AATTTATTTAGGCCAATTTC+AGG | 0.278253 | 2_4:-12565266 | Msa0315930:three_prime_UTR |
| CTAAAACAGTAGCCTGAAAT+TGG | 0.301994 | 2_4:+12565254 | None:intergenic |
| GAAAGTGATTGCCAACATAT+TGG | 0.309790 | 2_4:+12567809 | None:intergenic |
| AGCAGAAAATTTAGATTTGA+AGG | 0.325081 | 2_4:+12566635 | None:intergenic |
| CTGAGGTTGATGTCCCTTAC+AGG | 0.328512 | 2_4:-12567170 | Msa0315930:CDS |
| TAATTCTTGCAACAGATATA+AGG | 0.332956 | 2_4:-12566533 | Msa0315930:intron |
| TCCTCTCTACATGTCAATAC+TGG | 0.336210 | 2_4:-12565372 | Msa0315930:three_prime_UTR |
| AATCAGCACCTTGGCCTGTA+AGG | 0.372499 | 2_4:+12567156 | None:intergenic |
| CCTCTAATTCCTGTCCGTAA+TGG | 0.378043 | 2_4:-12566346 | Msa0315930:CDS |
| CTCTCATCCTGAGGTGGTGA+TGG | 0.386660 | 2_4:+12566696 | None:intergenic |
| TGAACCTCAACTACTTTGTA+AGG | 0.389739 | 2_4:-12565174 | Msa0315930:three_prime_UTR |
| GCCTTGATCTTGCCTCAAAA+AGG | 0.392265 | 2_4:-12566378 | Msa0315930:CDS |
| TAAATTCCTACTACAAATCA+TGG | 0.392317 | 2_4:+12565451 | None:intergenic |
| AAAGTGATTGCCAACATATT+GGG | 0.393517 | 2_4:+12567810 | None:intergenic |
| CAGAGAAGACAGGGATCGTC+TGG | 0.403840 | 2_4:-12567348 | Msa0315930:CDS |
| AGAGAGAAGGGAGAAAGAAA+AGG | 0.416938 | 2_4:+12569253 | None:intergenic |
| CATCTTCACTCACTAATTCT+CGG | 0.418524 | 2_4:-12567610 | Msa0315930:CDS |
| AGGTGAAAGTAGCCATGGTT+AGG | 0.423647 | 2_4:+12569189 | None:intergenic |
| ACTCTTCTGGGCCTGTATCT+GGG | 0.428779 | 2_4:-12567296 | Msa0315930:CDS |
| TGGCCTTAAAGAGAAGTTAC+TGG | 0.429545 | 2_4:-12566488 | Msa0315930:CDS |
| CCATTACGGACAGGAATTAG+AGG | 0.430973 | 2_4:+12566346 | None:intergenic |
| GGAAATTCCTCCATATGTTC+AGG | 0.432060 | 2_4:-12566200 | Msa0315930:intron |
| TAACAAAGAAATAAAGCATA+TGG | 0.436058 | 2_4:+12569333 | None:intergenic |
| GAGAGAAGGGAGAAAGAAAA+GGG | 0.440874 | 2_4:+12569254 | None:intergenic |
| CTCTTCAACAGACTTCCCTT+CGG | 0.442480 | 2_4:+12566306 | None:intergenic |
| ACCTGCATTGCATTCTTGAA+TGG | 0.443529 | 2_4:-12567932 | Msa0315930:intron |
| AAGATGAAACATACAGTTGA+TGG | 0.451081 | 2_4:+12569035 | None:intergenic |
| GAGATGAATGCTGGCATAGC+TGG | 0.452625 | 2_4:-12566421 | Msa0315930:CDS |
| GGACGAGCGTTGGCAGTTGA+TGG | 0.452688 | 2_4:+12567216 | None:intergenic |
| GTTGATTGCATCCCAGATAC+AGG | 0.453284 | 2_4:+12567285 | None:intergenic |
| ATCTTCACTCACTAATTCTC+GGG | 0.453331 | 2_4:-12567609 | Msa0315930:CDS |
| ATGCTGTGAAGACTTAGCTT+GGG | 0.454516 | 2_4:-12565574 | Msa0315930:exon |
| GAAGAGGATGGAGCTGAGAA+AGG | 0.454590 | 2_4:+12569128 | None:intergenic |
| GTCGGTGAGCTACCGCCAAC+TGG | 0.458070 | 2_4:+12567249 | None:intergenic |
| CTCTACTTGCAGCGGCATAT+AGG | 0.463448 | 2_4:+12567388 | None:intergenic |
| TGATGATGATGGAGAAGAGA+AGG | 0.464602 | 2_4:+12569166 | None:intergenic |
| TTTCTTTGAAAGACCCTGCC+TGG | 0.465367 | 2_4:-12567790 | Msa0315930:intron |
| AGCTGAGAAAGGAGGAGGAG+TGG | 0.468770 | 2_4:+12569139 | None:intergenic |
| GATGGACTAACCTGAACATA+TGG | 0.471478 | 2_4:+12566190 | None:intergenic |
| ATCTCATCACACGTCTGAAT+CGG | 0.477572 | 2_4:-12569282 | Msa0315930:five_prime_UTR |
| AAATTTAGATTTGAAGGACT+CGG | 0.485514 | 2_4:+12566641 | None:intergenic |
| TTACAGTCCATCACCACCTC+AGG | 0.487454 | 2_4:-12566703 | Msa0315930:CDS |
| GATGGAGCTGAGAAAGGAGG+AGG | 0.494226 | 2_4:+12569134 | None:intergenic |
| TTAGGTGAGAACTGAGGAAG+TGG | 0.495917 | 2_4:+12569213 | None:intergenic |
| TGTTCAGAGACAGAGAAGAC+AGG | 0.496007 | 2_4:-12567358 | Msa0315930:CDS |
| CAAATAAACATATACCAGGC+AGG | 0.496575 | 2_4:+12567776 | None:intergenic |
| TGAATAAGAAGAAAGAGAGA+AGG | 0.496936 | 2_4:+12569240 | None:intergenic |
| GAGGATGGAGCTGAGAAAGG+AGG | 0.499832 | 2_4:+12569131 | None:intergenic |
| AAGTAGCCATGGTTAGGGTT+AGG | 0.500621 | 2_4:+12569195 | None:intergenic |
| AATGCTCCATGATTTGTAGT+AGG | 0.501923 | 2_4:-12565457 | Msa0315930:three_prime_UTR |
| AATTTAGATTTGAAGGACTC+GGG | 0.514225 | 2_4:+12566642 | None:intergenic |
| AGACAGGGATCGTCTGGAGC+AGG | 0.517977 | 2_4:-12567342 | Msa0315930:CDS |
| CTAGTGTTTCTTGCAACCTC+AGG | 0.518593 | 2_4:+12567195 | None:intergenic |
| GAATAAGAAGAAAGAGAGAA+GGG | 0.518676 | 2_4:+12569241 | None:intergenic |
| ACCATTCAAGAATGCAATGC+AGG | 0.523952 | 2_4:+12567931 | None:intergenic |
| ATCAAAATCAATTTCATCTG+AGG | 0.534385 | 2_4:+12567428 | None:intergenic |
| AGATTTGAAGGACTCGGGAA+AGG | 0.536774 | 2_4:+12566647 | None:intergenic |
| GCAAAGAGTGCCCAATATGT+TGG | 0.538649 | 2_4:-12567820 | Msa0315930:CDS |
| ATCATCAAAAGCTGAAGAAG+AGG | 0.541296 | 2_4:+12569112 | None:intergenic |
| TCTGTTGAAGAGAAAGACAC+TGG | 0.543702 | 2_4:-12566295 | Msa0315930:CDS |
| GGTGAAAGTAGCCATGGTTA+GGG | 0.547953 | 2_4:+12569190 | None:intergenic |
| TTGAAAACAAGAATCTCTGA+TGG | 0.551136 | 2_4:+12567318 | None:intergenic |
| GTTCAGAGACAGAGAAGACA+GGG | 0.552538 | 2_4:-12567357 | Msa0315930:CDS |
| TAGCACTGTTGCTAGTCGAA+TGG | 0.553644 | 2_4:-12566221 | Msa0315930:CDS |
| CCACAGCGTCAAGAAGCTCT+TGG | 0.555254 | 2_4:+12567669 | None:intergenic |
| AGTTTCCTCTCATCCTGAGG+TGG | 0.556607 | 2_4:+12566690 | None:intergenic |
| ACAGTAAAAGAGCTGAGTAA+AGG | 0.560131 | 2_4:-12566454 | Msa0315930:CDS |
| TTTAGTTTCCTCTCATCCTG+AGG | 0.560375 | 2_4:+12566687 | None:intergenic |
| AAAGGTGCAAGAGACGACTT+TGG | 0.562692 | 2_4:-12565520 | Msa0315930:three_prime_UTR |
| TCACCATTAGAATATCCAAA+GGG | 0.563103 | 2_4:+12567584 | None:intergenic |
| TGGAGCATTGATAACAATGC+AGG | 0.563861 | 2_4:+12565471 | None:intergenic |
| AACTGCCAACGCTCGTCCTG+AGG | 0.563873 | 2_4:-12567211 | Msa0315930:CDS |
| GATGCTGTGAAGACTTAGCT+TGG | 0.567829 | 2_4:-12565575 | Msa0315930:exon |
| CTTACAACTTCACCAGTTGG+CGG | 0.573253 | 2_4:-12567261 | Msa0315930:CDS |
| TGATGATGGAGAAGAGAAGG+AGG | 0.574257 | 2_4:+12569169 | None:intergenic |
| GAAGGAGGTGAAAGTAGCCA+TGG | 0.575347 | 2_4:+12569184 | None:intergenic |
| TTGATGTCCCTTACAGGCCA+AGG | 0.579004 | 2_4:-12567164 | Msa0315930:intron |
| AGAGCTTCTTGACGCTGTGG+AGG | 0.581549 | 2_4:-12567666 | Msa0315930:CDS |
| GGAGTGGAAGATGATGATGA+TGG | 0.581573 | 2_4:+12569155 | None:intergenic |
| CATCACCACCTCAGGATGAG+AGG | 0.582341 | 2_4:-12566695 | Msa0315930:CDS |
| TCTAATTCCTGTCCGTAATG+GGG | 0.587637 | 2_4:-12566344 | Msa0315930:CDS |
| CTGTAAGGGACATCAACCTC+AGG | 0.588123 | 2_4:+12567171 | None:intergenic |
| ACGCATACCAACATGTGCAT+TGG | 0.588346 | 2_4:+12565494 | None:intergenic |
| ACACTTACAACTTCACCAGT+TGG | 0.591557 | 2_4:-12567264 | Msa0315930:CDS |
| CTAATTCCTGTCCGTAATGG+GGG | 0.595714 | 2_4:-12566343 | Msa0315930:CDS |
| ATCAGCACCTTGGCCTGTAA+GGG | 0.596111 | 2_4:+12567157 | None:intergenic |
| AAATCCTTACAAAGTAGTTG+AGG | 0.598424 | 2_4:+12565170 | None:intergenic |
| AGATGAAACATACAGTTGAT+GGG | 0.600146 | 2_4:+12569036 | None:intergenic |
| AATTCTAAAACTGAAGCAAG+TGG | 0.605650 | 2_4:-12566271 | Msa0315930:CDS |
| CCAAGAGCTTCTTGACGCTG+TGG | 0.605864 | 2_4:-12567669 | Msa0315930:CDS |
| GTTCAACGTGAGATGAATGC+TGG | 0.607319 | 2_4:-12566430 | Msa0315930:CDS |
| TGCAACCTCAGGACGAGCGT+TGG | 0.607887 | 2_4:+12567206 | None:intergenic |
| ATCACCATTAGAATATCCAA+AGG | 0.608593 | 2_4:+12567583 | None:intergenic |
| TCAAAAGCTGAAGAAGAGGA+TGG | 0.610945 | 2_4:+12569116 | None:intergenic |
| AAATAAACATATACCAGGCA+GGG | 0.612594 | 2_4:+12567777 | None:intergenic |
| TCAATTTCTAAAAGTACTCG+TGG | 0.615408 | 2_4:-12566508 | Msa0315930:CDS |
| GGCAGTTGATGGTAGATCAG+TGG | 0.627162 | 2_4:+12567227 | None:intergenic |
| TCCAGTATTGACATGTAGAG+AGG | 0.628190 | 2_4:+12565371 | None:intergenic |
| ACAGTGCTAGAAATGTGTGA+GGG | 0.630970 | 2_4:+12566235 | None:intergenic |
| CTGTTGAAGAGAAAGACACT+GGG | 0.636117 | 2_4:-12566294 | Msa0315930:CDS |
| AACAGTGCTAGAAATGTGTG+AGG | 0.645291 | 2_4:+12566234 | None:intergenic |
| GGACTAACCTGAACATATGG+AGG | 0.649006 | 2_4:+12566193 | None:intergenic |
| AAAACGAGCTCTACTTGCAG+CGG | 0.654386 | 2_4:+12567380 | None:intergenic |
| TTGGTGACCAATGCACATGT+TGG | 0.660739 | 2_4:-12565501 | Msa0315930:three_prime_UTR |
| GATCAATTTATAGAGCTCAG+TGG | 0.663393 | 2_4:-12565418 | Msa0315930:three_prime_UTR |
| CAGTGCTAGAAATGTGTGAG+GGG | 0.664316 | 2_4:+12566236 | None:intergenic |
| ACCATTAGAATATCCAAAGG+GGG | 0.670624 | 2_4:+12567586 | None:intergenic |
| TGCAAGAAACACTAGTCCTG+AGG | 0.676328 | 2_4:-12567187 | Msa0315930:CDS |
| GTTGATGGTAGATCAGTGGT+CGG | 0.680474 | 2_4:+12567231 | None:intergenic |
| AGTGCTAGAAATGTGTGAGG+GGG | 0.683784 | 2_4:+12566237 | None:intergenic |
| TTAGGGTTAGGTGAGAACTG+AGG | 0.689355 | 2_4:+12569207 | None:intergenic |
| TGCTGTGAAGACTTAGCTTG+GGG | 0.693141 | 2_4:-12565573 | Msa0315930:exon |
| GTAGAGAGGAACAATAACCA+TGG | 0.693467 | 2_4:+12565385 | None:intergenic |
| TTCTCACCTAACCCTAACCA+TGG | 0.704621 | 2_4:-12569201 | Msa0315930:exon |
| CACCATTAGAATATCCAAAG+GGG | 0.704628 | 2_4:+12567585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAGATTTTGCATT+TGG | - | chr2_4:12565469-12565488 | Msa0315930:three_prime_UTR | 15.0% |
| !!! | TTTTTTTAGATTTTGCATTT+GGG | - | chr2_4:12565470-12565489 | Msa0315930:three_prime_UTR | 15.0% |
| !! | TTATGATGATTAAATAAACA+TGG | + | chr2_4:12565855-12565874 | None:intergenic | 15.0% |
| !! | ATGTTTATTTAATCATCATA+AGG | - | chr2_4:12565854-12565873 | Msa0315930:intron | 15.0% |
| !!! | AAGTAATAAATTTTTATGTG+TGG | - | chr2_4:12566236-12566255 | Msa0315930:CDS | 15.0% |
| !!! | ACATAAATTGTTTTTTCTTT+AGG | - | chr2_4:12566615-12566634 | Msa0315930:intron | 15.0% |
| !! | TTGTAACTTATATATATTCA+GGG | + | chr2_4:12567478-12567497 | None:intergenic | 15.0% |
| !! | TTTGTAACTTATATATATTC+AGG | + | chr2_4:12567479-12567498 | None:intergenic | 15.0% |
| !!! | AAAACCCTATAATTTTAATA+TGG | - | chr2_4:12568484-12568503 | Msa0315930:intron | 15.0% |
| !! | GATACCATATTAAAATTATA+GGG | + | chr2_4:12568491-12568510 | None:intergenic | 15.0% |
| !! | TGATACCATATTAAAATTAT+AGG | + | chr2_4:12568492-12568511 | None:intergenic | 15.0% |
| !!! | TGAAATAATTTACTAGATTT+TGG | - | chr2_4:12569129-12569148 | Msa0315930:CDS | 15.0% |
| !! | TAACAAAGAAATAAAGCATA+TGG | + | chr2_4:12565138-12565157 | None:intergenic | 20.0% |
| !!! | ATATGCTTTATTTCTTTGTT+AGG | - | chr2_4:12565137-12565156 | Msa0315930:three_prime_UTR | 20.0% |
| !!! | AATTTTTTGTTGAGAAATGA+GGG | - | chr2_4:12565625-12565644 | Msa0315930:intron | 20.0% |
| !!! | TGAATTTGCTTAAAATTTCA+AGG | - | chr2_4:12565721-12565740 | Msa0315930:intron | 20.0% |
| !!! | ATATGTTACGTTTTAATTTC+AGG | - | chr2_4:12566489-12566508 | Msa0315930:CDS | 20.0% |
| !! | TTTCTTGTGTTAAAATTTGT+TGG | - | chr2_4:12566941-12566960 | Msa0315930:intron | 20.0% |
| !!! | TTACGAGTAAAAAGTTATTT+TGG | - | chr2_4:12567413-12567432 | Msa0315930:CDS | 20.0% |
| !! | TTAACATATGAAACATTAGT+AGG | + | chr2_4:12567717-12567736 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAGTTTGATAGA+TGG | + | chr2_4:12568305-12568324 | None:intergenic | 20.0% |
| !!! | TATCTGATACTTTTATTTCT+AGG | - | chr2_4:12568357-12568376 | Msa0315930:intron | 20.0% |
| !!! | TAATAGAATAAGTTTGTTTG+CGG | - | chr2_4:12568623-12568642 | Msa0315930:intron | 20.0% |
| !!! | TGTTGTCAACTATTTTTTTT+GGG | + | chr2_4:12568763-12568782 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAACTATTTTTTT+TGG | + | chr2_4:12568764-12568783 | None:intergenic | 20.0% |
| !!! | AATAATTTACTAGATTTTGG+AGG | - | chr2_4:12569132-12569151 | Msa0315930:CDS | 20.0% |
| ! | CATCAAATTTCTATACAACA+AGG | + | chr2_4:12565585-12565604 | None:intergenic | 25.0% |
| ! | AATTTGATGTGTGTTTATGA+TGG | - | chr2_4:12565596-12565615 | Msa0315930:intron | 25.0% |
| !!! | CAATTTTTTGTTGAGAAATG+AGG | - | chr2_4:12565624-12565643 | Msa0315930:intron | 25.0% |
| !!! | TGTTTTTACCTTGATTTTTG+TGG | - | chr2_4:12565677-12565696 | Msa0315930:intron | 25.0% |
| ! | TTTAATCATCATAAGGAATC+AGG | - | chr2_4:12565861-12565880 | Msa0315930:intron | 25.0% |
| ! | TTAATCATCATAAGGAATCA+GGG | - | chr2_4:12565862-12565881 | Msa0315930:intron | 25.0% |
| !! | TAAACTTTTATGACACTGTT+TGG | - | chr2_4:12565922-12565941 | Msa0315930:intron | 25.0% |
| !! | AAACTTTTATGACACTGTTT+GGG | - | chr2_4:12565923-12565942 | Msa0315930:intron | 25.0% |
| ! | GTTATATAAGCACTTATGAA+TGG | + | chr2_4:12566088-12566107 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr2_4:12566132-12566151 | Msa0315930:intron | 25.0% |
| !! | TAAATTTTTATGTGTGGATG+AGG | - | chr2_4:12566242-12566261 | Msa0315930:CDS | 25.0% |
| ! | ATAGATAAATATATCGTTGC+GGG | + | chr2_4:12566346-12566365 | None:intergenic | 25.0% |
| ! | GATAGATAAATATATCGTTG+CGG | + | chr2_4:12566347-12566366 | None:intergenic | 25.0% |
| ! | CTAATTCATCAAGCTATATA+AGG | + | chr2_4:12566566-12566585 | None:intergenic | 25.0% |
| ! | TTTGCAAATAAACATATACC+AGG | + | chr2_4:12566699-12566718 | None:intergenic | 25.0% |
| ! | TAAAAAGCTTGTATTGAGAA+GGG | + | chr2_4:12566734-12566753 | None:intergenic | 25.0% |
| ! | ATAAAAAGCTTGTATTGAGA+AGG | + | chr2_4:12566735-12566754 | None:intergenic | 25.0% |
| !! | TTCTCAATACAAGCTTTTTA+TGG | - | chr2_4:12566734-12566753 | Msa0315930:intron | 25.0% |
| ! | ATAGTATGATAAACGTATCA+AGG | + | chr2_4:12566978-12566997 | None:intergenic | 25.0% |
| ! | TACTATCATTCAATGATTAG+AGG | - | chr2_4:12566992-12567011 | Msa0315930:intron | 25.0% |
| ! | ATCAAAATCAATTTCATCTG+AGG | + | chr2_4:12567043-12567062 | None:intergenic | 25.0% |
| !!! | AGATGAAATTGATTTTGATG+AGG | - | chr2_4:12567044-12567063 | Msa0315930:intron | 25.0% |
| !!! | CTTTTAAGTATAATAAGCAG+TGG | - | chr2_4:12567343-12567362 | Msa0315930:CDS | 25.0% |
| ! | TGATGAATTAAACTGACTAA+TGG | - | chr2_4:12567532-12567551 | Msa0315930:intron | 25.0% |
| !! | TCAAGGATGTTTTGTAATTT+TGG | - | chr2_4:12567626-12567645 | Msa0315930:CDS | 25.0% |
| !! | CAAGGATGTTTTGTAATTTT+GGG | - | chr2_4:12567627-12567646 | Msa0315930:CDS | 25.0% |
| !!! | TTCATATGTTAACTTTTTCC+TGG | - | chr2_4:12567725-12567744 | Msa0315930:intron | 25.0% |
| ! | AAATTTAGATTTGAAGGACT+CGG | + | chr2_4:12567830-12567849 | None:intergenic | 25.0% |
| ! | AGCAGAAAATTTAGATTTGA+AGG | + | chr2_4:12567836-12567855 | None:intergenic | 25.0% |
| ! | TAATTCTTGCAACAGATATA+AGG | - | chr2_4:12567935-12567954 | Msa0315930:CDS | 25.0% |
| ! | ATGTTGTCAACTAAAAAATC+TGG | - | chr2_4:12568592-12568611 | Msa0315930:intron | 25.0% |
| ! | AAAGAAAAGAAAAAAACGCT+TGG | - | chr2_4:12568708-12568727 | Msa0315930:intron | 25.0% |
| ! | AATACATTCATTACTTCGAA+AGG | + | chr2_4:12568793-12568812 | None:intergenic | 25.0% |
| ! | TAAATTCCTACTACAAATCA+TGG | + | chr2_4:12569020-12569039 | None:intergenic | 25.0% |
| ! | AATTTATTTAGGCCAATTTC+AGG | - | chr2_4:12569202-12569221 | Msa0315930:exon | 25.0% |
| GAATAAGAAGAAAGAGAGAA+GGG | + | chr2_4:12565230-12565249 | None:intergenic | 30.0% | |
| TGAATAAGAAGAAAGAGAGA+AGG | + | chr2_4:12565231-12565250 | None:intergenic | 30.0% | |
| AGATGAAACATACAGTTGAT+GGG | + | chr2_4:12565435-12565454 | None:intergenic | 30.0% | |
| AAGATGAAACATACAGTTGA+TGG | + | chr2_4:12565436-12565455 | None:intergenic | 30.0% | |
| AACTCAAACCACAAAAATCA+AGG | + | chr2_4:12565688-12565707 | None:intergenic | 30.0% | |
| ! | AAGCTATTCTAAAGAGCTTA+TGG | + | chr2_4:12566001-12566020 | None:intergenic | 30.0% |
| TAGATAAATATATCGTTGCG+GGG | + | chr2_4:12566345-12566364 | None:intergenic | 30.0% | |
| ! | GTTTAATTATGCCTTTTGTG+AGG | - | chr2_4:12566374-12566393 | Msa0315930:CDS | 30.0% |
| TTGTAACTAATCCTCACAAA+AGG | + | chr2_4:12566388-12566407 | None:intergenic | 30.0% | |
| TAACACACTGTTCAACATTT+GGG | + | chr2_4:12566469-12566488 | None:intergenic | 30.0% | |
| TTAACACACTGTTCAACATT+TGG | + | chr2_4:12566470-12566489 | None:intergenic | 30.0% | |
| ATAGCTTGATGAATTAGTCA+TGG | - | chr2_4:12566569-12566588 | Msa0315930:intron | 30.0% | |
| AAAGTGATTGCCAACATATT+GGG | + | chr2_4:12566661-12566680 | None:intergenic | 30.0% | |
| AAATAAACATATACCAGGCA+GGG | + | chr2_4:12566694-12566713 | None:intergenic | 30.0% | |
| AAAAAGCTTGTATTGAGAAG+GGG | + | chr2_4:12566733-12566752 | None:intergenic | 30.0% | |
| ! | CAAGCTTTTTATGGTATGAT+TGG | - | chr2_4:12566743-12566762 | Msa0315930:intron | 30.0% |
| TCACCATTAGAATATCCAAA+GGG | + | chr2_4:12566887-12566906 | None:intergenic | 30.0% | |
| ATCACCATTAGAATATCCAA+AGG | + | chr2_4:12566888-12566907 | None:intergenic | 30.0% | |
| TTGAAAACAAGAATCTCTGA+TGG | + | chr2_4:12567153-12567172 | None:intergenic | 30.0% | |
| !!! | ATTCTTGTTTTCAACTCTTC+TGG | - | chr2_4:12567159-12567178 | Msa0315930:intron | 30.0% |
| !!! | TTCTTGTTTTCAACTCTTCT+GGG | - | chr2_4:12567160-12567179 | Msa0315930:intron | 30.0% |
| TACTCGTAAGTAAACAATCA+GGG | + | chr2_4:12567402-12567421 | None:intergenic | 30.0% | |
| TTACTCGTAAGTAAACAATC+AGG | + | chr2_4:12567403-12567422 | None:intergenic | 30.0% | |
| TGAATAACAAGAGACATTCA+AGG | - | chr2_4:12567609-12567628 | Msa0315930:CDS | 30.0% | |
| ! | AAATGAGTGAACAGTCATTT+TGG | + | chr2_4:12567693-12567712 | None:intergenic | 30.0% |
| AATTTAGATTTGAAGGACTC+GGG | + | chr2_4:12567829-12567848 | None:intergenic | 30.0% | |
| TAAGATAAGTTAGCAGTGAA+GGG | + | chr2_4:12567911-12567930 | None:intergenic | 30.0% | |
| TTAAGATAAGTTAGCAGTGA+AGG | + | chr2_4:12567912-12567931 | None:intergenic | 30.0% | |
| !! | TCAATTTCTAAAAGTACTCG+TGG | - | chr2_4:12567960-12567979 | Msa0315930:CDS | 30.0% |
| !! | AATTCTAAAACTGAAGCAAG+TGG | - | chr2_4:12568197-12568216 | Msa0315930:intron | 30.0% |
| !! | GTTTTAGATAAAGAGAGGAA+AGG | + | chr2_4:12568469-12568488 | None:intergenic | 30.0% |
| !!! | ATAGGGTTTTAGATAAAGAG+AGG | + | chr2_4:12568474-12568493 | None:intergenic | 30.0% |
| ACATGATTTGAATTCCTTCA+CGG | + | chr2_4:12568576-12568595 | None:intergenic | 30.0% | |
| ! | ATAAGTTTGTTTGCGGAATT+TGG | - | chr2_4:12568630-12568649 | Msa0315930:intron | 30.0% |
| ! | TAAGTTTGTTTGCGGAATTT+GGG | - | chr2_4:12568631-12568650 | Msa0315930:intron | 30.0% |
| AAAGAAAAAAACGCTTGGAT+TGG | - | chr2_4:12568713-12568732 | Msa0315930:intron | 30.0% | |
| !!! | TTACTATTTTGATTCCAGAG+AGG | - | chr2_4:12568866-12568885 | Msa0315930:intron | 30.0% |
| !! | CTATGCTGATTTGTTCAAAA+AGG | - | chr2_4:12568930-12568949 | Msa0315930:intron | 30.0% |
| AAATCCTTACAAAGTAGTTG+AGG | + | chr2_4:12569301-12569320 | None:intergenic | 30.0% | |
| ATCATCAAAAGCTGAAGAAG+AGG | + | chr2_4:12565359-12565378 | None:intergenic | 35.0% | |
| TTTGTTGAGAAATGAGGGTT+TGG | - | chr2_4:12565630-12565649 | Msa0315930:intron | 35.0% | |
| ! | GCTTATTTGAGTTTATCTGC+TGG | - | chr2_4:12565897-12565916 | Msa0315930:intron | 35.0% |
| CACCTTATGACATGATCATA+AGG | - | chr2_4:12565959-12565978 | Msa0315930:intron | 35.0% | |
| CACCTTATGATCATGTCATA+AGG | + | chr2_4:12565964-12565983 | None:intergenic | 35.0% | |
| AATGTGTATAAGGTCCTGTT+TGG | + | chr2_4:12566149-12566168 | None:intergenic | 35.0% | |
| TATCTCACTCAGTGTATAAC+AGG | - | chr2_4:12566283-12566302 | Msa0315930:CDS | 35.0% | |
| ATCTCACTCAGTGTATAACA+GGG | - | chr2_4:12566284-12566303 | Msa0315930:CDS | 35.0% | |
| TACAACCTGTAGATTACCAA+AGG | - | chr2_4:12566410-12566429 | Msa0315930:CDS | 35.0% | |
| ACAACCTGTAGATTACCAAA+GGG | - | chr2_4:12566411-12566430 | Msa0315930:CDS | 35.0% | |
| !! | TTTTCCCTTTGGTAATCTAC+AGG | + | chr2_4:12566418-12566437 | None:intergenic | 35.0% |
| ! | GAATTAGTCATGGATTGTTG+TGG | - | chr2_4:12566579-12566598 | Msa0315930:intron | 35.0% |
| GAAAGTGATTGCCAACATAT+TGG | + | chr2_4:12566662-12566681 | None:intergenic | 35.0% | |
| CAAATAAACATATACCAGGC+AGG | + | chr2_4:12566695-12566714 | None:intergenic | 35.0% | |
| CATCTTCACTCACTAATTCT+CGG | - | chr2_4:12566858-12566877 | Msa0315930:intron | 35.0% | |
| ATCTTCACTCACTAATTCTC+GGG | - | chr2_4:12566859-12566878 | Msa0315930:intron | 35.0% | |
| ACCATTAGAATATCCAAAGG+GGG | + | chr2_4:12566885-12566904 | None:intergenic | 35.0% | |
| CACCATTAGAATATCCAAAG+GGG | + | chr2_4:12566886-12566905 | None:intergenic | 35.0% | |
| GAGGAAAATTACTCTCTTTC+AGG | - | chr2_4:12567011-12567030 | Msa0315930:intron | 35.0% | |
| ! | TTTTGGTCCCTAAATATACG+AGG | - | chr2_4:12567430-12567449 | Msa0315930:CDS | 35.0% |
| ACAGTAAAAGAGCTGAGTAA+AGG | - | chr2_4:12568014-12568033 | Msa0315930:intron | 35.0% | |
| AAGAGTTTGATAGATGGAGA+TGG | + | chr2_4:12568299-12568318 | None:intergenic | 35.0% | |
| AACAATGATGAGACAGTTCA+TGG | + | chr2_4:12568537-12568556 | None:intergenic | 35.0% | |
| ! | AATGCTCCATGATTTGTAGT+AGG | - | chr2_4:12569011-12569030 | Msa0315930:intron | 35.0% |
| GATCAATTTATAGAGCTCAG+TGG | - | chr2_4:12569050-12569069 | Msa0315930:CDS | 35.0% | |
| !!! | TCAGTGGATTTTTTCATCCA+TGG | - | chr2_4:12569066-12569085 | Msa0315930:CDS | 35.0% |
| CTAAAACAGTAGCCTGAAAT+TGG | + | chr2_4:12569217-12569236 | None:intergenic | 35.0% | |
| TGAACCTCAACTACTTTGTA+AGG | - | chr2_4:12569294-12569313 | Msa0315930:five_prime_UTR | 35.0% | |
| ATCTCATCACACGTCTGAAT+CGG | - | chr2_4:12565186-12565205 | Msa0315930:three_prime_UTR | 40.0% | |
| GAGAGAAGGGAGAAAGAAAA+GGG | + | chr2_4:12565217-12565236 | None:intergenic | 40.0% | |
| AGAGAGAAGGGAGAAAGAAA+AGG | + | chr2_4:12565218-12565237 | None:intergenic | 40.0% | |
| !! | TGATGATGATGGAGAAGAGA+AGG | + | chr2_4:12565305-12565324 | None:intergenic | 40.0% |
| TCAAAAGCTGAAGAAGAGGA+TGG | + | chr2_4:12565355-12565374 | None:intergenic | 40.0% | |
| !!! | ATGAGGGTTTGGTGTGATTT+TGG | - | chr2_4:12565641-12565660 | Msa0315930:intron | 40.0% |
| CAGCTGCTTCAATGTGTATA+AGG | + | chr2_4:12566159-12566178 | None:intergenic | 40.0% | |
| CTTATACACATTGAAGCAGC+TGG | - | chr2_4:12566157-12566176 | Msa0315930:intron | 40.0% | |
| ! | CAGCTAGCAAATTTTCCCTT+TGG | + | chr2_4:12566429-12566448 | None:intergenic | 40.0% |
| ACCTGCATTGCATTCTTGAA+TGG | - | chr2_4:12566536-12566555 | Msa0315930:intron | 40.0% | |
| ACCATTCAAGAATGCAATGC+AGG | + | chr2_4:12566540-12566559 | None:intergenic | 40.0% | |
| ! | TAGTCATGGATTGTTGTGGT+TGG | - | chr2_4:12566583-12566602 | Msa0315930:intron | 40.0% |
| ACACTTACAACTTCACCAGT+TGG | - | chr2_4:12567204-12567223 | Msa0315930:CDS | 40.0% | |
| GTTATACACAATCAGCACCT+TGG | + | chr2_4:12567324-12567343 | None:intergenic | 40.0% | |
| GATACCGCCTCGTATATTTA+GGG | + | chr2_4:12567440-12567459 | None:intergenic | 40.0% | |
| TGATACCGCCTCGTATATTT+AGG | + | chr2_4:12567441-12567460 | None:intergenic | 40.0% | |
| GTGTTCTTCGTTCGTTAGTT+TGG | + | chr2_4:12567574-12567593 | None:intergenic | 40.0% | |
| ACGAACGAAGAACACATTCA+AGG | - | chr2_4:12567579-12567598 | Msa0315930:intron | 40.0% | |
| ! | CTAGAATGTATTAGCCTAGC+AGG | + | chr2_4:12567668-12567687 | None:intergenic | 40.0% |
| CTGCTAGGCTAATACATTCT+AGG | - | chr2_4:12567666-12567685 | Msa0315930:CDS | 40.0% | |
| AAGAACTCTGAACACAAACC+AGG | + | chr2_4:12567746-12567765 | None:intergenic | 40.0% | |
| ! | TTTAGTTTCCTCTCATCCTG+AGG | + | chr2_4:12567784-12567803 | None:intergenic | 40.0% |
| !! | AATTTTCTGCTGCTTCAGCT+AGG | - | chr2_4:12567845-12567864 | Msa0315930:intron | 40.0% |
| ! | TGGCCTTAAAGAGAAGTTAC+TGG | - | chr2_4:12567980-12567999 | Msa0315930:intron | 40.0% |
| GAGCCAGTAACTTCTCTTTA+AGG | + | chr2_4:12567986-12568005 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTGAGGCAAGATCA+AGG | + | chr2_4:12568094-12568113 | None:intergenic | 40.0% |
| TGATCTTGCCTCAAAAAGGT+CGG | - | chr2_4:12568094-12568113 | Msa0315930:intron | 40.0% | |
| CTCTAATTCCTGTCCGTAAT+GGG | - | chr2_4:12568123-12568142 | Msa0315930:intron | 40.0% | |
| TCTAATTCCTGTCCGTAATG+GGG | - | chr2_4:12568124-12568143 | Msa0315930:intron | 40.0% | |
| TCTGTTGAAGAGAAAGACAC+TGG | - | chr2_4:12568173-12568192 | Msa0315930:intron | 40.0% | |
| CTGTTGAAGAGAAAGACACT+GGG | - | chr2_4:12568174-12568193 | Msa0315930:intron | 40.0% | |
| ACAGTGCTAGAAATGTGTGA+GGG | + | chr2_4:12568236-12568255 | None:intergenic | 40.0% | |
| AACAGTGCTAGAAATGTGTG+AGG | + | chr2_4:12568237-12568256 | None:intergenic | 40.0% | |
| GGAAATTCCTCCATATGTTC+AGG | - | chr2_4:12568268-12568287 | Msa0315930:intron | 40.0% | |
| !! | GATGGACTAACCTGAACATA+TGG | + | chr2_4:12568281-12568300 | None:intergenic | 40.0% |
| AATGATGAGACAGTTCATGG+AGG | + | chr2_4:12568534-12568553 | None:intergenic | 40.0% | |
| ATGCTGTGAAGACTTAGCTT+GGG | - | chr2_4:12568894-12568913 | Msa0315930:intron | 40.0% | |
| !! | TGGAGCATTGATAACAATGC+AGG | + | chr2_4:12569000-12569019 | None:intergenic | 40.0% |
| GTAGAGAGGAACAATAACCA+TGG | + | chr2_4:12569086-12569105 | None:intergenic | 40.0% | |
| TCCTCTCTACATGTCAATAC+TGG | - | chr2_4:12569096-12569115 | Msa0315930:CDS | 40.0% | |
| !! | TCCAGTATTGACATGTAGAG+AGG | + | chr2_4:12569100-12569119 | None:intergenic | 40.0% |
| TTAGGTGAGAACTGAGGAAG+TGG | + | chr2_4:12565258-12565277 | None:intergenic | 45.0% | |
| TTAGGGTTAGGTGAGAACTG+AGG | + | chr2_4:12565264-12565283 | None:intergenic | 45.0% | |
| TTCTCACCTAACCCTAACCA+TGG | - | chr2_4:12565267-12565286 | Msa0315930:three_prime_UTR | 45.0% | |
| AAGTAGCCATGGTTAGGGTT+AGG | + | chr2_4:12565276-12565295 | None:intergenic | 45.0% | |
| GGTGAAAGTAGCCATGGTTA+GGG | + | chr2_4:12565281-12565300 | None:intergenic | 45.0% | |
| AGGTGAAAGTAGCCATGGTT+AGG | + | chr2_4:12565282-12565301 | None:intergenic | 45.0% | |
| !! | TGATGATGGAGAAGAGAAGG+AGG | + | chr2_4:12565302-12565321 | None:intergenic | 45.0% |
| ! | GGAGTGGAAGATGATGATGA+TGG | + | chr2_4:12565316-12565335 | None:intergenic | 45.0% |
| CTCAAATAAGCCATCCAAGC+AGG | + | chr2_4:12565888-12565907 | None:intergenic | 45.0% | |
| GGGTAAATGTTTGGCATCAC+AGG | + | chr2_4:12566325-12566344 | None:intergenic | 45.0% | |
| ATCGTTGCGGGGTAAATGTT+TGG | + | chr2_4:12566334-12566353 | None:intergenic | 45.0% | |
| !! | GCAAAGAGTGCCCAATATGT+TGG | - | chr2_4:12566648-12566667 | Msa0315930:CDS | 45.0% |
| ! | TTTCTTTGAAAGACCCTGCC+TGG | - | chr2_4:12566678-12566697 | Msa0315930:CDS | 45.0% |
| GCCCCCTTTGGATATTCTAA+TGG | - | chr2_4:12566881-12566900 | Msa0315930:intron | 45.0% | |
| AAAACGAGCTCTACTTGCAG+CGG | + | chr2_4:12567091-12567110 | None:intergenic | 45.0% | |
| TGTTCAGAGACAGAGAAGAC+AGG | - | chr2_4:12567110-12567129 | Msa0315930:intron | 45.0% | |
| GTTCAGAGACAGAGAAGACA+GGG | - | chr2_4:12567111-12567130 | Msa0315930:intron | 45.0% | |
| GTTGATTGCATCCCAGATAC+AGG | + | chr2_4:12567186-12567205 | None:intergenic | 45.0% | |
| CTTACAACTTCACCAGTTGG+CGG | - | chr2_4:12567207-12567226 | Msa0315930:CDS | 45.0% | |
| !! | GTTGATGGTAGATCAGTGGT+CGG | + | chr2_4:12567240-12567259 | None:intergenic | 45.0% |
| CTAGTGTTTCTTGCAACCTC+AGG | + | chr2_4:12567276-12567295 | None:intergenic | 45.0% | |
| TGCAAGAAACACTAGTCCTG+AGG | - | chr2_4:12567281-12567300 | Msa0315930:CDS | 45.0% | |
| TGGTCCCTAAATATACGAGG+CGG | - | chr2_4:12567433-12567452 | Msa0315930:CDS | 45.0% | |
| AGATTTGAAGGACTCGGGAA+AGG | + | chr2_4:12567824-12567843 | None:intergenic | 45.0% | |
| GTTCAACGTGAGATGAATGC+TGG | - | chr2_4:12568038-12568057 | Msa0315930:intron | 45.0% | |
| GCCTTGATCTTGCCTCAAAA+AGG | - | chr2_4:12568090-12568109 | Msa0315930:intron | 45.0% | |
| GATCTTGCCTCAAAAAGGTC+GGG | - | chr2_4:12568095-12568114 | Msa0315930:intron | 45.0% | |
| CCATTACGGACAGGAATTAG+AGG | + | chr2_4:12568125-12568144 | None:intergenic | 45.0% | |
| CCTCTAATTCCTGTCCGTAA+TGG | - | chr2_4:12568122-12568141 | Msa0315930:intron | 45.0% | |
| CTAATTCCTGTCCGTAATGG+GGG | - | chr2_4:12568125-12568144 | Msa0315930:intron | 45.0% | |
| ! | GAACTTCAGGCTTTTCCGAA+GGG | - | chr2_4:12568147-12568166 | Msa0315930:intron | 45.0% |
| CTCTTCAACAGACTTCCCTT+CGG | + | chr2_4:12568165-12568184 | None:intergenic | 45.0% | |
| AGTGCTAGAAATGTGTGAGG+GGG | + | chr2_4:12568234-12568253 | None:intergenic | 45.0% | |
| CAGTGCTAGAAATGTGTGAG+GGG | + | chr2_4:12568235-12568254 | None:intergenic | 45.0% | |
| TAGCACTGTTGCTAGTCGAA+TGG | - | chr2_4:12568247-12568266 | Msa0315930:intron | 45.0% | |
| GGACTAACCTGAACATATGG+AGG | + | chr2_4:12568278-12568297 | None:intergenic | 45.0% | |
| GGTATCAAAGTATACCCTCC+TGG | - | chr2_4:12568505-12568524 | Msa0315930:intron | 45.0% | |
| GATGCTGTGAAGACTTAGCT+TGG | - | chr2_4:12568893-12568912 | Msa0315930:intron | 45.0% | |
| ! | TGCTGTGAAGACTTAGCTTG+GGG | - | chr2_4:12568895-12568914 | Msa0315930:intron | 45.0% |
| ! | AAAGGTGCAAGAGACGACTT+TGG | - | chr2_4:12568948-12568967 | Msa0315930:intron | 45.0% |
| ! | TTGGTGACCAATGCACATGT+TGG | - | chr2_4:12568967-12568986 | Msa0315930:intron | 45.0% |
| ACGCATACCAACATGTGCAT+TGG | + | chr2_4:12568977-12568996 | None:intergenic | 45.0% | |
| !! | GAAAAATTATTAATTTATTT+AGG | - | chr2_4:12569191-12569210 | Msa0315930:exon | 5.0% |
| GAAGGAGGTGAAAGTAGCCA+TGG | + | chr2_4:12565287-12565306 | None:intergenic | 50.0% | |
| GAAGAGGATGGAGCTGAGAA+AGG | + | chr2_4:12565343-12565362 | None:intergenic | 50.0% | |
| ATAAGGAATCAGGGCCTGCT+TGG | - | chr2_4:12565871-12565890 | Msa0315930:intron | 50.0% | |
| CTCTACTTGCAGCGGCATAT+AGG | + | chr2_4:12567083-12567102 | None:intergenic | 50.0% | |
| AACTCTTCTGGGCCTGTATC+TGG | - | chr2_4:12567171-12567190 | Msa0315930:CDS | 50.0% | |
| ACTCTTCTGGGCCTGTATCT+GGG | - | chr2_4:12567172-12567191 | Msa0315930:CDS | 50.0% | |
| !! | GGCAGTTGATGGTAGATCAG+TGG | + | chr2_4:12567244-12567263 | None:intergenic | 50.0% |
| CTGTAAGGGACATCAACCTC+AGG | + | chr2_4:12567300-12567319 | None:intergenic | 50.0% | |
| !! | CTGAGGTTGATGTCCCTTAC+AGG | - | chr2_4:12567298-12567317 | Msa0315930:CDS | 50.0% |
| TTGATGTCCCTTACAGGCCA+AGG | - | chr2_4:12567304-12567323 | Msa0315930:CDS | 50.0% | |
| ATCAGCACCTTGGCCTGTAA+GGG | + | chr2_4:12567314-12567333 | None:intergenic | 50.0% | |
| AATCAGCACCTTGGCCTGTA+AGG | + | chr2_4:12567315-12567334 | None:intergenic | 50.0% | |
| TTACAGTCCATCACCACCTC+AGG | - | chr2_4:12567765-12567784 | Msa0315930:intron | 50.0% | |
| AGTTTCCTCTCATCCTGAGG+TGG | + | chr2_4:12567781-12567800 | None:intergenic | 50.0% | |
| GAGATGAATGCTGGCATAGC+TGG | - | chr2_4:12568047-12568066 | Msa0315930:intron | 50.0% | |
| ! | AGGAGAACCCGACCTTTTTG+AGG | + | chr2_4:12568105-12568124 | None:intergenic | 50.0% |
| AGCCTGAAGTTCCCCCATTA+CGG | + | chr2_4:12568139-12568158 | None:intergenic | 50.0% | |
| ! | GGAACTTCAGGCTTTTCCGA+AGG | - | chr2_4:12568146-12568165 | Msa0315930:intron | 50.0% |
| GTTCATGGAGGATTCCAGGA+GGG | + | chr2_4:12568522-12568541 | None:intergenic | 50.0% | |
| AGTTCATGGAGGATTCCAGG+AGG | + | chr2_4:12568523-12568542 | None:intergenic | 50.0% | |
| GACAGTTCATGGAGGATTCC+AGG | + | chr2_4:12568526-12568545 | None:intergenic | 50.0% | |
| TCACAGCATCATGTCCTCTC+TGG | + | chr2_4:12568883-12568902 | None:intergenic | 50.0% | |
| AGCTGAGAAAGGAGGAGGAG+TGG | + | chr2_4:12565332-12565351 | None:intergenic | 55.0% | |
| GATGGAGCTGAGAAAGGAGG+AGG | + | chr2_4:12565337-12565356 | None:intergenic | 55.0% | |
| GAGGATGGAGCTGAGAAAGG+AGG | + | chr2_4:12565340-12565359 | None:intergenic | 55.0% | |
| CCACAGCGTCAAGAAGCTCT+TGG | + | chr2_4:12566802-12566821 | None:intergenic | 55.0% | |
| CCAAGAGCTTCTTGACGCTG+TGG | - | chr2_4:12566799-12566818 | Msa0315930:intron | 55.0% | |
| AGAGCTTCTTGACGCTGTGG+AGG | - | chr2_4:12566802-12566821 | Msa0315930:intron | 55.0% | |
| ACTAATTCTCGGGCCCCCTT+TGG | - | chr2_4:12566869-12566888 | Msa0315930:intron | 55.0% | |
| CAGAGAAGACAGGGATCGTC+TGG | - | chr2_4:12567120-12567139 | Msa0315930:intron | 55.0% | |
| CTATAACGACTGCGCCTGCT+AGG | - | chr2_4:12567651-12567670 | Msa0315930:CDS | 55.0% | |
| CTCTCATCCTGAGGTGGTGA+TGG | + | chr2_4:12567775-12567794 | None:intergenic | 55.0% | |
| CATCACCACCTCAGGATGAG+AGG | - | chr2_4:12567773-12567792 | Msa0315930:intron | 55.0% | |
| GAAGTTCCCCCATTACGGAC+AGG | + | chr2_4:12568134-12568153 | None:intergenic | 55.0% | |
| ! | GTCCGTAATGGGGGAACTTC+AGG | - | chr2_4:12568134-12568153 | Msa0315930:intron | 55.0% |
| GCTGTCGAGTTTCACCGTGA+AGG | - | chr2_4:12568559-12568578 | Msa0315930:intron | 55.0% | |
| GGAATCAGGGCCTGCTTGGA+TGG | - | chr2_4:12565875-12565894 | Msa0315930:intron | 60.0% | |
| ! | AGACAGGGATCGTCTGGAGC+AGG | - | chr2_4:12567126-12567145 | Msa0315930:intron | 60.0% |
| !! | GGACGAGCGTTGGCAGTTGA+TGG | + | chr2_4:12567255-12567274 | None:intergenic | 60.0% |
| AACTGCCAACGCTCGTCCTG+AGG | - | chr2_4:12567257-12567276 | Msa0315930:CDS | 60.0% | |
| TGCAACCTCAGGACGAGCGT+TGG | + | chr2_4:12567265-12567284 | None:intergenic | 60.0% | |
| GTCGGTGAGCTACCGCCAAC+TGG | + | chr2_4:12567222-12567241 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 12565126 | 12569364 | 12565126 | ID=Msa0315930;Name=Msa0315930 |
| chr2_4 | mRNA | 12565126 | 12569364 | 12565126 | ID=Msa0315930-mRNA-1;Parent=Msa0315930;Name=Msa0315930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=160|1|1|1|1|1|8|454|381 |
| chr2_4 | exon | 12565126 | 12565606 | 12565126 | ID=Msa0315930-mRNA-1:exon:4840;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12566201 | 12566540 | 12566201 | ID=Msa0315930-mRNA-1:exon:4839;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12566624 | 12566731 | 12566624 | ID=Msa0315930-mRNA-1:exon:4838;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12567165 | 12567457 | 12567165 | ID=Msa0315930-mRNA-1:exon:4837;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12567580 | 12567691 | 12567580 | ID=Msa0315930-mRNA-1:exon:4836;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12567791 | 12567853 | 12567791 | ID=Msa0315930-mRNA-1:exon:4835;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12567933 | 12567979 | 12567933 | ID=Msa0315930-mRNA-1:exon:4834;Parent=Msa0315930-mRNA-1 |
| chr2_4 | exon | 12569049 | 12569364 | 12569049 | ID=Msa0315930-mRNA-1:exon:4833;Parent=Msa0315930-mRNA-1 |
| chr2_4 | five_prime_UTR | 12569205 | 12569364 | 12569205 | ID=Msa0315930-mRNA-1:five_prime_utr;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12569049 | 12569204 | 12569049 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12567933 | 12567979 | 12567933 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12567791 | 12567853 | 12567791 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12567580 | 12567691 | 12567580 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12567165 | 12567457 | 12567165 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12566624 | 12566731 | 12566624 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12566201 | 12566540 | 12566201 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | CDS | 12565580 | 12565606 | 12565580 | ID=Msa0315930-mRNA-1:cds;Parent=Msa0315930-mRNA-1 |
| chr2_4 | three_prime_UTR | 12565126 | 12565579 | 12565126 | ID=Msa0315930-mRNA-1:three_prime_utr;Parent=Msa0315930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
