AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0809050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0809050 MtrunA17_Chr5g0424301 99.181 733 6 0 1 733 1 733 0.0 1509
Msa0809050 MtrunA17_Chr3g0115111 75.310 725 143 8 32 732 19 731 0.0 1096
Msa0809050 MtrunA17_Chr3g0131001 66.913 677 194 7 64 732 50 704 0.0 884
Msa0809050 MtrunA17_Chr8g0385201 62.267 697 206 8 51 732 12 666 0.0 868
Msa0809050 MtrunA17_Chr8g0353121 50.667 750 303 12 37 732 14 750 0.0 678
Msa0809050 MtrunA17_Chr1g0171491 48.816 760 276 14 64 732 56 793 0.0 654
Msa0809050 MtrunA17_Chr1g0180261 42.481 798 307 15 60 729 42 815 0.0 586
Msa0809050 MtrunA17_Chr8g0380791 40.078 766 342 17 65 727 9 760 1.72e-180 534
Msa0809050 MtrunA17_Chr3g0082501 62.830 417 137 7 320 732 358 760 2.41e-167 500
Msa0809050 MtrunA17_Chr3g0082501 58.580 169 70 0 64 232 59 227 1.86e-63 226
Msa0809050 MtrunA17_Chr3g0082501 32.258 124 84 0 70 193 134 257 3.36e-15 79.7
Msa0809050 MtrunA17_Chr3g0082501 44.318 88 49 0 69 156 156 243 6.67e-14 75.5
Msa0809050 MtrunA17_Chr7g0256301 57.882 425 156 7 311 732 387 791 4.75e-162 488
Msa0809050 MtrunA17_Chr7g0256301 60.714 168 66 0 65 232 67 234 5.69e-66 233
Msa0809050 MtrunA17_Chr7g0256301 45.570 79 43 0 70 148 164 242 3.54e-12 70.1
Msa0809050 MtrunA17_Chr7g0256301 35.354 99 64 0 70 168 141 239 1.03e-11 68.6
Msa0809050 MtrunA17_Chr7g0256301 34.343 99 56 1 136 234 69 158 2.36e-11 67.4
Msa0809050 MtrunA17_Chr8g0377671 39.205 176 107 0 57 232 8 183 3.25e-34 132
Msa0809050 MtrunA17_Chr8g0377671 34.591 159 104 0 69 227 112 270 8.53e-24 102
Msa0809050 MtrunA17_Chr8g0377671 37.681 138 86 0 68 205 134 271 1.37e-21 95.9
Msa0809050 MtrunA17_Chr4g0059911 37.288 177 108 1 56 232 46 219 1.98e-31 126
Msa0809050 MtrunA17_Chr4g0059911 30.000 200 133 3 59 253 94 291 1.37e-19 91.7
Msa0809050 MtrunA17_Chr4g0059911 27.200 250 150 5 94 318 11 253 3.55e-18 87.0
Msa0809050 MtrunA17_Chr8g0377191 36.842 171 108 0 62 232 5 175 5.10e-31 120
Msa0809050 MtrunA17_Chr8g0377211 39.216 153 92 1 53 205 4 155 4.37e-30 117
Msa0809050 MtrunA17_Chr8g0382971 37.500 168 105 0 65 232 21 188 4.63e-30 122
Msa0809050 MtrunA17_Chr8g0382971 34.940 166 108 0 67 232 69 234 9.83e-25 106
Msa0809050 MtrunA17_Chr8g0382971 34.286 175 111 2 59 231 109 281 2.83e-22 99.4
Msa0809050 MtrunA17_Chr2g0316611 35.678 199 102 2 49 224 19 214 9.43e-27 112
Msa0809050 MtrunA17_Chr2g0316611 35.714 182 94 1 67 225 172 353 2.38e-24 105
Msa0809050 MtrunA17_Chr2g0316611 41.935 124 72 0 69 192 243 366 3.87e-22 99.0
Msa0809050 MtrunA17_Chr2g0316611 30.526 190 118 1 65 240 147 336 5.85e-19 89.7
Msa0809050 MtrunA17_Chr2g0316611 31.915 141 96 0 92 232 36 176 2.28e-16 81.6
Msa0809050 MtrunA17_Chr2g0316631 30.645 248 120 3 49 250 19 260 2.89e-26 109
Msa0809050 MtrunA17_Chr2g0316631 32.258 217 115 3 41 227 72 286 5.96e-25 105
Msa0809050 MtrunA17_Chr2g0316631 32.432 148 100 0 67 214 149 296 2.93e-18 86.3
Msa0809050 MtrunA17_Chr2g0316631 50.000 58 29 0 67 124 241 298 2.51e-11 65.5
Msa0809050 MtrunA17_Chr5g0424111 38.650 163 100 0 70 232 198 360 8.59e-26 111
Msa0809050 MtrunA17_Chr5g0424111 38.889 126 77 0 71 196 245 370 1.23e-18 89.4
Msa0809050 MtrunA17_Chr6g0467061 32.143 224 121 3 69 268 88 304 2.03e-25 108
Msa0809050 MtrunA17_Chr6g0467061 35.135 185 97 1 66 227 16 200 3.00e-25 107
Msa0809050 MtrunA17_Chr6g0467061 30.986 213 119 2 40 224 123 335 2.07e-20 93.2
Msa0809050 MtrunA17_Chr6g0467061 31.325 166 114 0 67 232 63 228 2.72e-17 84.0
Msa0809050 MtrunA17_Chr7g0233351 35.928 167 107 0 66 232 189 355 2.58e-25 109
Msa0809050 MtrunA17_Chr7g0233351 40.625 128 76 0 71 198 240 367 3.29e-22 100
Msa0809050 MtrunA17_Chr7g0233351 36.449 107 68 0 70 176 262 368 1.42e-14 77.0
Msa0809050 MtrunA17_Chr3g0114791 33.684 190 124 1 45 232 159 348 4.09e-25 108
Msa0809050 MtrunA17_Chr4g0055371 35.928 167 107 0 66 232 169 335 4.81e-24 105
Msa0809050 MtrunA17_Chr4g0055371 36.719 128 81 0 71 198 220 347 2.09e-18 88.6
Msa0809050 MtrunA17_Chr4g0055371 33.019 106 71 0 71 176 243 348 1.61e-11 67.0
Msa0809050 MtrunA17_Chr8g0336161 34.444 180 115 1 56 232 181 360 2.24e-23 103
Msa0809050 MtrunA17_Chr8g0336161 39.844 128 77 0 71 198 245 372 6.51e-21 96.7
Msa0809050 MtrunA17_Chr8g0336161 35.849 106 68 0 71 176 268 373 1.05e-14 77.4
Msa0809050 MtrunA17_Chr5g0398011 41.379 116 68 0 68 183 34 149 1.51e-21 91.7
Msa0809050 MtrunA17_Chr5g0398011 31.579 114 78 0 93 206 36 149 7.45e-14 69.7
Msa0809050 MtrunA17_Chr8g0385241 33.831 201 100 4 65 232 6 206 1.28e-20 95.5
Msa0809050 MtrunA17_Chr8g0385241 30.500 200 105 2 67 232 54 253 4.58e-18 87.4
Msa0809050 MtrunA17_Chr8g0385241 29.545 176 113 2 68 232 124 299 1.24e-16 83.2
Msa0809050 MtrunA17_Chr8g0385241 36.301 146 92 1 90 234 8 153 5.93e-16 80.9
Msa0809050 MtrunA17_Chr8g0385241 31.293 147 100 1 71 216 183 329 9.62e-14 73.9
Msa0809050 MtrunA17_Chr8g0385241 30.137 146 100 1 38 183 199 342 2.91e-11 66.2
Msa0809050 MtrunA17_Chr5g0398021 40.000 100 60 0 69 168 13 112 4.53e-19 84.7
Msa0809050 MtrunA17_Chr5g0398021 32.673 101 68 0 92 192 13 113 3.98e-11 62.0
Msa0809050 MtrunA17_Chr5g0398021 33.673 98 65 0 117 214 15 112 5.73e-11 61.6
Msa0809050 MtrunA17_Chr8g0383331 31.973 147 100 0 69 215 4 150 1.52e-18 83.6
Msa0809050 MtrunA17_Chr8g0383331 36.667 120 76 0 91 210 3 122 4.04e-17 79.3
Msa0809050 MtrunA17_Chr8g0383331 32.231 121 82 0 112 232 1 121 2.25e-16 77.4
Msa0809050 MtrunA17_Chr8g0377221 35.616 146 79 2 66 196 71 216 3.18e-17 82.8
Msa0809050 MtrunA17_Chr8g0377221 29.744 195 99 2 67 223 3 197 9.10e-17 81.3
Msa0809050 MtrunA17_Chr8g0383551 27.706 231 115 7 53 232 10 239 1.81e-16 82.0
Msa0809050 MtrunA17_Chr8g0383551 26.415 159 82 3 91 214 109 267 4.92e-11 65.1
Msa0809050 MtrunA17_Chr1g0210831 29.381 194 105 4 28 220 579 741 1.72e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0809050 AT1G21980.1 74.861 720 147 8 31 732 48 751 0.0 1082
Msa0809050 AT1G77740.2 75.035 713 147 7 39 732 53 753 0.0 1075
Msa0809050 AT1G77740.1 75.035 713 147 7 39 732 53 753 0.0 1075
Msa0809050 AT2G26420.2 60.140 715 232 12 47 732 28 718 0.0 838
Msa0809050 AT2G26420.3 60.140 715 232 12 47 732 28 718 0.0 838
Msa0809050 AT2G26420.1 59.664 714 223 11 47 732 28 704 0.0 833
Msa0809050 AT3G07960.1 54.144 724 246 15 64 732 22 714 0.0 739
Msa0809050 AT2G41210.1 52.210 724 274 13 64 732 65 771 0.0 727
Msa0809050 AT3G56960.2 52.407 727 273 14 64 732 67 778 0.0 725
Msa0809050 AT3G56960.1 52.407 727 273 14 64 732 67 778 0.0 725
Msa0809050 AT3G07960.3 55.226 574 190 10 64 583 22 582 0.0 619
Msa0809050 AT3G07960.2 55.226 574 190 10 64 583 22 582 0.0 619
Msa0809050 AT3G07960.2 32.432 148 95 1 39 181 61 208 1.71e-16 84.0
Msa0809050 AT3G07960.4 55.226 574 190 10 64 583 22 582 0.0 619
Msa0809050 AT3G07960.4 32.432 148 95 1 39 181 61 208 1.71e-16 84.0
Msa0809050 AT3G09920.3 41.432 782 330 15 63 732 47 812 0.0 576
Msa0809050 AT3G09920.4 41.432 782 330 15 63 732 47 812 0.0 576
Msa0809050 AT3G09920.2 41.432 782 330 15 63 732 47 812 0.0 576
Msa0809050 AT3G09920.1 41.432 782 330 15 63 732 47 812 0.0 576
Msa0809050 AT1G10900.2 41.821 758 340 16 65 732 7 753 0.0 543
Msa0809050 AT1G10900.1 41.821 758 340 16 65 732 7 753 0.0 543
Msa0809050 AT1G10900.3 41.821 758 340 16 65 732 7 753 0.0 543
Msa0809050 AT1G60890.1 40.722 776 338 18 64 731 6 767 7.06e-180 533
Msa0809050 AT1G60890.2 40.722 776 338 18 64 731 18 779 1.16e-179 533
Msa0809050 AT1G01460.1 37.825 423 214 8 355 732 4 422 5.97e-81 265
Msa0809050 AT4G01190.1 38.095 399 189 6 371 730 12 391 2.50e-78 257
Msa0809050 AT4G01190.3 38.095 399 189 6 371 730 22 401 3.23e-78 257
Msa0809050 AT4G01190.2 38.095 399 189 6 371 730 22 401 3.23e-78 257
Msa0809050 AT1G77660.1 37.126 167 105 0 66 232 175 341 9.27e-27 114
Msa0809050 AT1G77660.1 36.508 126 80 0 71 196 226 351 1.18e-16 83.6
Msa0809050 AT1G21920.2 37.423 163 102 0 70 232 175 337 5.02e-25 108
Msa0809050 AT1G21920.2 38.281 128 79 0 71 198 222 349 4.20e-18 87.4
Msa0809050 AT1G21920.1 37.423 163 102 0 70 232 175 337 7.59e-25 108
Msa0809050 AT1G21920.1 38.281 128 79 0 71 198 222 349 5.62e-18 87.4
Msa0809050 AT2G35170.1 35.404 161 104 0 72 232 229 389 5.60e-23 103
Msa0809050 AT2G35170.1 37.984 129 80 0 71 199 274 402 1.39e-21 99.4
Msa0809050 AT4G17080.1 34.969 163 106 0 70 232 258 420 1.57e-22 102
Msa0809050 AT4G17080.1 37.209 129 81 0 71 199 305 433 4.59e-21 97.8
Msa0809050 AT4G17080.1 32.867 143 94 1 90 232 234 374 6.13e-13 72.4
Msa0809050 AT1G34260.4 34.158 202 103 10 398 579 952 1143 1.82e-14 78.2
Msa0809050 AT1G34260.2 34.158 202 103 10 398 579 1192 1383 1.94e-14 78.2
Msa0809050 AT1G34260.1 34.158 202 103 10 398 579 1192 1383 1.94e-14 78.2
Msa0809050 AT1G34260.3 34.158 202 103 10 398 579 1192 1383 1.94e-14 78.2
Msa0809050 AT1G75010.1 30.469 128 87 2 94 220 604 730 1.46e-12 71.6

Find 231 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGCGTTCTATATTT+TGG 0.084583 5_3:+34725855 Msa0809050:CDS
CACCAGTGAATTCTCATATT+TGG 0.134783 5_3:-34724212 None:intergenic
TGGCGTAACGGCGTTATATC+TGG 0.180746 5_3:+34722761 Msa0809050:CDS
TGACAACACTTATGACAAAA+TGG 0.237609 5_3:+34724755 Msa0809050:CDS
ACATTTGAGGAAGCTGTTTC+AGG 0.245765 5_3:+34723666 Msa0809050:CDS
CTGGGAAGGGTTCGTTAGTT+TGG 0.245826 5_3:+34722780 Msa0809050:CDS
CACTGGTGACAAAATTCTTT+GGG 0.252892 5_3:+34724227 Msa0809050:CDS
TTAATTTGCAATTGGGGATT+AGG 0.273921 5_3:+34723194 Msa0809050:CDS
GCCAACCGTTCTGCTCTTGC+TGG 0.278983 5_3:-34725759 None:intergenic
ATCCAAAGCTATACTCAAAA+AGG 0.280883 5_3:+34725973 Msa0809050:CDS
TCTCCACCGGCGGTGATTGC+TGG 0.283531 5_3:+34722275 Msa0809050:CDS
CTTGGAAAACGAGAAAATTA+TGG 0.284377 5_3:+34724698 Msa0809050:CDS
TGTTTCGTGTACAACGAAAT+TGG 0.287459 5_3:+34724528 Msa0809050:CDS
TGAGCGGGATTGTGAGTTCT+TGG 0.304803 5_3:+34724680 Msa0809050:CDS
AAATCAAATCGTCTATGAAT+TGG 0.308050 5_3:-34724416 None:intergenic
TCACTGGTGACAAAATTCTT+TGG 0.313285 5_3:+34724226 Msa0809050:CDS
TTTGTGATCATCATGATTCA+TGG 0.316766 5_3:-34726097 None:intergenic
CCATCATATTCATATCCTAT+TGG 0.327679 5_3:-34726390 None:intergenic
TCTTCAGAAAATCATTAATC+AGG 0.329444 5_3:+34725721 Msa0809050:intron
TTCATAACACCTTGTCCTTT+CGG 0.334631 5_3:-34722845 None:intergenic
AATTATGGACTACAGTCTTT+TGG 0.340214 5_3:+34724713 Msa0809050:CDS
TTCTGCTCTTGCTGGCATAT+TGG 0.341644 5_3:-34725751 None:intergenic
TGGAAACGAGGAAAAGCTTC+AGG 0.343078 5_3:+34722485 Msa0809050:CDS
TAAGCCTCCCCGCTGCTATA+AGG 0.344398 5_3:-34725834 None:intergenic
ATGAAGATTCAACATGGTTT+TGG 0.351168 5_3:+34722863 Msa0809050:CDS
TCGAAGCAGAGTTGCAAGAT+AGG 0.359055 5_3:+34724940 Msa0809050:CDS
TGGGAAGGGTTCGTTAGTTT+GGG 0.361513 5_3:+34722781 Msa0809050:CDS
TTGATCCTAAGGAGAAGTTC+TGG 0.368369 5_3:+34723371 Msa0809050:CDS
GGTTCGTTAGTTTGGGTTAA+CGG 0.369043 5_3:+34722788 Msa0809050:CDS
ATGGATCCGGGAAGTATCTA+TGG 0.372629 5_3:+34722435 Msa0809050:CDS
AATTTATTGTGGTCACCAAT+AGG 0.379049 5_3:+34726375 Msa0809050:three_prime_UTR
TTGAAACCCACTTGCAAAAG+AGG 0.384867 5_3:+34726144 Msa0809050:three_prime_UTR
GGACGTTACGTTTGGAAGAA+TGG 0.386687 5_3:+34722719 Msa0809050:CDS
GACAACACTTATGACAAAAT+GGG 0.387432 5_3:+34724756 Msa0809050:CDS
GAAGAATATTCATTGAAGAT+TGG 0.390671 5_3:+34726012 Msa0809050:CDS
TTTGATGCTTAATTTGCAAT+TGG 0.398155 5_3:+34723186 Msa0809050:CDS
TTCTACGCCGGAAGTTTCTC+CGG 0.400570 5_3:+34722401 Msa0809050:CDS
TAATCATGAATCTGTCATCT+TGG 0.402081 5_3:-34723783 None:intergenic
TGATGATGATTTGCTGGATC+AGG 0.405005 5_3:+34726271 Msa0809050:three_prime_UTR
CCATGATGATGATGATTTGC+TGG 0.406506 5_3:+34726265 Msa0809050:three_prime_UTR
TCTGTTGATACTACTGTTAG+TGG 0.407554 5_3:+34722938 Msa0809050:CDS
CTGATGAACAGTAAACTCTA+AGG 0.407609 5_3:-34726169 None:intergenic
GTTTCATCAATCTCATCCTC+AGG 0.418360 5_3:-34724473 None:intergenic
GGATCCATTCGGTACGTTGC+CGG 0.418393 5_3:-34722420 None:intergenic
TTGATGAGGCGGGGTAATCT+TGG 0.419366 5_3:-34723416 None:intergenic
TTGGGTTAACGGAAACCGTT+TGG 0.419511 5_3:+34722799 Msa0809050:CDS
GATAGGGATCGAGTTAAATC+TGG 0.420387 5_3:+34724957 Msa0809050:CDS
ACGGTCAAGGACGTTACGTT+TGG 0.420599 5_3:+34722711 Msa0809050:CDS
GTCGGTCCATAGATACTTCC+CGG 0.423054 5_3:-34722441 None:intergenic
TTGATGCTTAATTTGCAATT+GGG 0.424572 5_3:+34723187 Msa0809050:CDS
GGCAACGTACCGAATGGATC+CGG 0.425374 5_3:+34722422 Msa0809050:CDS
TTTGATTCTTCAGACATTTG+AGG 0.429922 5_3:+34723653 Msa0809050:intron
TTGGAGGGTTTGTGGGAGAA+TGG 0.430235 5_3:+34722818 Msa0809050:CDS
TACGTTGCCGGAGAAACTTC+CGG 0.431856 5_3:-34722408 None:intergenic
CTTGTCCAGAACTTCTCCTT+AGG 0.442703 5_3:-34723376 None:intergenic
AACTCAAGTGAGATTCTTTG+AGG 0.444966 5_3:-34726208 None:intergenic
GACGTTACGTTTGGAAGAAT+GGG 0.445546 5_3:+34722720 Msa0809050:CDS
CTGGTCAAACTATTTCTAAA+GGG 0.449919 5_3:+34723149 Msa0809050:CDS
CTTAGAGAACTTTCCTCTCC+CGG 0.455504 5_3:+34723733 Msa0809050:CDS
CATAGACGATTTGATTTGAA+AGG 0.457560 5_3:+34724422 Msa0809050:CDS
GTTCAGATCAAGGTCTTTGA+GGG 0.462840 5_3:-34724501 None:intergenic
ATCAAACCGCGGAGTTTCGA+TGG 0.467094 5_3:+34723434 Msa0809050:CDS
CAAATGGCTGATTCCACCAT+TGG 0.468458 5_3:-34725808 None:intergenic
TCCTTGTTGTTTCTCTTCTG+AGG 0.469889 5_3:+34723117 Msa0809050:CDS
TCCGATAGAAAACACGGGTT+CGG 0.471872 5_3:+34722629 Msa0809050:CDS
AATCATGAATCTGTCATCTT+GGG 0.472481 5_3:-34723782 None:intergenic
GTACATTGTGTGAAACCTAT+TGG 0.473664 5_3:+34724250 Msa0809050:CDS
GTGATACATATCGCGGGTCA+TGG 0.475326 5_3:+34722603 Msa0809050:CDS
CCTGGTCAAACTATTTCTAA+AGG 0.477641 5_3:+34723148 Msa0809050:CDS
TCAGATCCGGTTTATTGTGA+TGG 0.478024 5_3:+34724370 Msa0809050:intron
GAAACCGTTTGGAGGGTTTG+TGG 0.478922 5_3:+34722810 Msa0809050:CDS
CCAATAGGATATGAATATGA+TGG 0.479090 5_3:+34726390 Msa0809050:three_prime_UTR
CCCTCGTAAGTCGCGCCTGA+AGG 0.482364 5_3:-34722527 None:intergenic
GGCGTAACGGCGTTATATCT+GGG 0.483135 5_3:+34722762 Msa0809050:CDS
GATTGCCCATCACAATAAAC+CGG 0.485074 5_3:-34724376 None:intergenic
AAACCGTTTGGAGGGTTTGT+GGG 0.486108 5_3:+34722811 Msa0809050:CDS
ATTTGAATCCTTATAGCAGC+GGG 0.489048 5_3:+34725826 Msa0809050:CDS
GGATGCTTTCGAAACTCATC+AGG 0.490101 5_3:-34723097 None:intergenic
ATACCAGTGCGTAGAAGAAA+AGG 0.493562 5_3:-34724786 None:intergenic
TCGGGTCGAATGGAAGGATT+CGG 0.497771 5_3:+34722560 Msa0809050:CDS
GATACTACTGTTAGTGGTAG+AGG 0.499269 5_3:+34722944 Msa0809050:CDS
GGGACTTATTTAATTTATTG+TGG 0.502061 5_3:+34726364 Msa0809050:three_prime_UTR
GATTATATGTTGGCTATATG+TGG 0.502251 5_3:+34723700 Msa0809050:CDS
AACTCCGCGGTTTGATGAGG+CGG 0.504312 5_3:-34723427 None:intergenic
AAATATAGGAAGAGGGGTGA+AGG 0.508339 5_3:+34726418 Msa0809050:three_prime_UTR
AGTTCAGATCAAGGTCTTTG+AGG 0.508946 5_3:-34724502 None:intergenic
GATTCCCAAATACAAATCCT+AGG 0.509645 5_3:-34722989 None:intergenic
CAGATCCGGTTTATTGTGAT+GGG 0.510029 5_3:+34724371 Msa0809050:intron
GTTGCATGTACGAAGGTGAA+TGG 0.510431 5_3:+34722465 Msa0809050:CDS
ACTCCGCGGTTTGATGAGGC+GGG 0.514713 5_3:-34723426 None:intergenic
CGAGGAAAAGCTTCAGGGAA+AGG 0.515761 5_3:+34722491 Msa0809050:CDS
CGCTGCTATAAGGATTCAAA+TGG 0.515820 5_3:-34725824 None:intergenic
GAAACCTATTGGAGGCCAAA+AGG 0.519281 5_3:+34724261 Msa0809050:CDS
GAAGGATTCGGAACATTCGT+TGG 0.521458 5_3:+34722572 Msa0809050:CDS
TCTTCTGAGGTTAAGAGACC+TGG 0.521675 5_3:+34723130 Msa0809050:CDS
GCAATCACCGCCGGTGGAGA+AGG 0.522071 5_3:-34722272 None:intergenic
AAACTTACTTAATAAGATCC+TGG 0.522332 5_3:-34724553 None:intergenic
AGATACTTCCCGGATCCATT+CGG 0.526389 5_3:-34722431 None:intergenic
TTAGAGAACTTTCCTCTCCC+GGG 0.528049 5_3:+34723734 Msa0809050:CDS
CGAAGCAGAGTTGCAAGATA+GGG 0.528077 5_3:+34724941 Msa0809050:CDS
GTGATTTATACGAAGGGTGG+TGG 0.528555 5_3:+34722672 Msa0809050:CDS
AGAGTTCAAGTCGGGTCGAA+TGG 0.530606 5_3:+34722550 Msa0809050:CDS
CCTTTAGAAATAGTTTGACC+AGG 0.531392 5_3:-34723148 None:intergenic
CAAGAGCAGAACGGTTGGCA+AGG 0.532403 5_3:+34725763 Msa0809050:CDS
CAACATTCCTGAGCCGGAGA+AGG 0.533390 5_3:+34722241 Msa0809050:CDS
ATGTACAGTTGTTATACAAA+GGG 0.533655 5_3:+34726501 Msa0809050:three_prime_UTR
TACGAGGGAGAGTTCAAGTC+GGG 0.538370 5_3:+34722542 Msa0809050:CDS
TGATGCTTAATTTGCAATTG+GGG 0.539251 5_3:+34723188 Msa0809050:CDS
TTCAAGTCGGGTCGAATGGA+AGG 0.541704 5_3:+34722554 Msa0809050:CDS
GGAACATTCGTTGGATCCGA+CGG 0.543679 5_3:+34722581 Msa0809050:CDS
GAGGAAAAGCTTCAGGGAAA+GGG 0.543979 5_3:+34722492 Msa0809050:CDS
TCAAAGAATCTCACTTGAGT+TGG 0.544059 5_3:+34726210 Msa0809050:three_prime_UTR
TGGACAAGGTTTCCGAGTGA+AGG 0.546695 5_3:+34723391 Msa0809050:CDS
CAGATCAAGGTCTTTGAGGG+TGG 0.547100 5_3:-34724498 None:intergenic
CTTTCCTCTCCCGGGAAAAG+CGG 0.547869 5_3:+34723742 Msa0809050:CDS
AAATAAAACAGCCTCGCCGC+CGG 0.548878 5_3:+34722102 Msa0809050:five_prime_UTR
AATATAGGAAGAGGGGTGAA+GGG 0.550375 5_3:+34726419 Msa0809050:three_prime_UTR
AGCTTCACGGTGGTTTCCGA+TGG 0.550449 5_3:+34722341 Msa0809050:CDS
ATTATATGTTGGCTATATGT+GGG 0.552492 5_3:+34723701 Msa0809050:CDS
GAAGAGCAACATTCCTGAGC+CGG 0.557996 5_3:+34722235 Msa0809050:CDS
TGACCAATTAGTACAAAATG+AGG 0.559260 5_3:+34726042 Msa0809050:three_prime_UTR
GCAACGTACCGAATGGATCC+GGG 0.560372 5_3:+34722423 Msa0809050:CDS
GGAAACGAGGAAAAGCTTCA+GGG 0.560523 5_3:+34722486 Msa0809050:CDS
TAGAAAGCAAAGAAGAGAAG+AGG 0.560817 5_3:-34722024 None:intergenic
TCTCCCACAAACCCTCCAAA+CGG 0.561965 5_3:-34722814 None:intergenic
GTTGTTATACAAAGGGTGGA+TGG 0.563033 5_3:+34726508 Msa0809050:three_prime_UTR
TTCATCAGATCACTGTAAGT+GGG 0.563085 5_3:+34726184 Msa0809050:three_prime_UTR
AATGTACAGTTGTTATACAA+AGG 0.563738 5_3:+34726500 Msa0809050:three_prime_UTR
ATTTGTATTTGGGAATCTGA+AGG 0.563741 5_3:+34722995 Msa0809050:CDS
GTCTACCACCTCCTTGTGAA+CGG 0.563775 5_3:-34722304 None:intergenic
TGTTGTCATCACGAAAATGA+AGG 0.564482 5_3:-34724740 None:intergenic
TTATGTGTAGATACACGGTT+GGG 0.565022 5_3:+34723308 Msa0809050:intron
TTTGATCAATACACCAATGG+TGG 0.566117 5_3:+34725795 Msa0809050:CDS
TGGGAATCTGAAGGTGAAGC+TGG 0.566561 5_3:+34723004 Msa0809050:CDS
CCAGCAAATCATCATCATCA+TGG 0.566567 5_3:-34726265 None:intergenic
ATAGCCAACATATAATCAGC+AGG 0.569375 5_3:-34723694 None:intergenic
GAAACACATAGTTCAGATCA+AGG 0.569553 5_3:-34724511 None:intergenic
CGAGATTCGTGCCGGCGGCG+AGG 0.570675 5_3:-34722113 None:intergenic
CTAAGGAGAAGTTCTGGACA+AGG 0.572481 5_3:+34723377 Msa0809050:CDS
TCCTTAGGATCAAAATCACT+AGG 0.573231 5_3:-34723361 None:intergenic
TGAAACCCACTTGCAAAAGA+GGG 0.573637 5_3:+34726145 Msa0809050:three_prime_UTR
GTTCATCAGATCACTGTAAG+TGG 0.573715 5_3:+34726183 Msa0809050:three_prime_UTR
GATAAAATATCTTCTCCTGA+AGG 0.573939 5_3:+34726064 Msa0809050:three_prime_UTR
GCCGCCGGCACGAATCTCGC+CGG 0.575511 5_3:+34722117 Msa0809050:five_prime_UTR
GCCAGCAAGAGCAGAACGGT+TGG 0.576008 5_3:+34725758 Msa0809050:CDS
AGTGAAGAAATCTGAAGTCA+AGG 0.576419 5_3:+34723810 Msa0809050:CDS
TTCTCCGGCAACGTACCGAA+TGG 0.579587 5_3:+34722416 Msa0809050:CDS
CGAAACTCCGCGGTTTGATG+AGG 0.581720 5_3:-34723430 None:intergenic
TCGATGGAAAGATTACTGTC+CGG 0.582178 5_3:+34723450 Msa0809050:CDS
CCGGCGTAGAAATCTCCGTT+CGG 0.582234 5_3:-34722389 None:intergenic
TACAGTTGTTATACAAAGGG+TGG 0.584198 5_3:+34726504 Msa0809050:three_prime_UTR
GCCTTCAGGCGCGACTTACG+AGG 0.585744 5_3:+34722526 Msa0809050:CDS
TGGGAGAATGGTGTTCCGAA+AGG 0.586485 5_3:+34722830 Msa0809050:CDS
GGTTAACGGAAACCGTTTGG+AGG 0.586593 5_3:+34722802 Msa0809050:CDS
AGTGACACCGACGAGCTTCA+CGG 0.588056 5_3:+34722328 Msa0809050:CDS
GTGTTCCAGACAAATTGAGC+GGG 0.588866 5_3:+34724665 Msa0809050:intron
AGAAAATCATTAATCAGGCT+AGG 0.589168 5_3:+34725726 Msa0809050:intron
TAACGGCGTTATATCTGGGA+AGG 0.589873 5_3:+34722766 Msa0809050:CDS
GTTATGTGTAGATACACGGT+TGG 0.590677 5_3:+34723307 Msa0809050:intron
GTCCAAATATGAGAATTCAC+TGG 0.592833 5_3:+34724210 Msa0809050:CDS
TCCGGCGAGATTCGTGCCGG+CGG 0.593401 5_3:-34722118 None:intergenic
CTCAACAACGGATCTACCAT+CGG 0.594963 5_3:-34722357 None:intergenic
CGTAACGTTCAAGACGGTCA+AGG 0.599458 5_3:+34722698 Msa0809050:CDS
TGATCCTGCTGATTATATGT+TGG 0.603422 5_3:+34723690 Msa0809050:CDS
GGAAAACAAACCTTCTCCAC+CGG 0.604991 5_3:+34722262 Msa0809050:CDS
AATGGTGTTCCGAAAGGACA+AGG 0.606673 5_3:+34722836 Msa0809050:CDS
GATGATGATTTGCTGGATCA+GGG 0.606983 5_3:+34726272 Msa0809050:three_prime_UTR
GTTAACGGAAACCGTTTGGA+GGG 0.607741 5_3:+34722803 Msa0809050:CDS
GGAATGAGTATGTTGGTGAA+TGG 0.608130 5_3:+34722741 Msa0809050:CDS
AGAAGCCGTTCACAAGGAGG+TGG 0.608692 5_3:+34722299 Msa0809050:CDS
GTGTAGATACACGGTTGGGA+AGG 0.610224 5_3:+34723312 Msa0809050:intron
TATGTTGGTGAATGGCGTAA+CGG 0.613312 5_3:+34722749 Msa0809050:CDS
AAGAATGGGAATGAGTATGT+TGG 0.613469 5_3:+34722734 Msa0809050:CDS
ATACTACTGTTAGTGGTAGA+GGG 0.613626 5_3:+34722945 Msa0809050:CDS
GAGCAGAACGGTTGGCAAGG+AGG 0.613970 5_3:+34725766 Msa0809050:CDS
GGTCAGAAACGTTACGCGAA+CGG 0.615476 5_3:+34722650 Msa0809050:CDS
ACTGGTGACAAAATTCTTTG+GGG 0.617270 5_3:+34724228 Msa0809050:CDS
CTTCCAGCAATCACCGCCGG+TGG 0.622524 5_3:-34722278 None:intergenic
GTAATCTTGGATCCTTCACT+CGG 0.623506 5_3:-34723403 None:intergenic
CTTCTTCCAGCAATCACCGC+CGG 0.623571 5_3:-34722281 None:intergenic
CCGAACGGAGATTTCTACGC+CGG 0.624286 5_3:+34722389 Msa0809050:CDS
CTCCGCGGTTTGATGAGGCG+GGG 0.626199 5_3:-34723425 None:intergenic
ACAACACTTATGACAAAATG+GGG 0.628764 5_3:+34724757 Msa0809050:CDS
GCTGGAAGAAGCCGTTCACA+AGG 0.630714 5_3:+34722293 Msa0809050:CDS
GAACGTTTCCTCATCAACAC+AGG 0.631655 5_3:-34722914 None:intergenic
GCGAACGGTGATTTATACGA+AGG 0.632599 5_3:+34722665 Msa0809050:CDS
GGGATCGAGTTAAATCTGGA+AGG 0.635478 5_3:+34724961 Msa0809050:CDS
ACTGAGCATTGATTCCTCGC+CGG 0.636498 5_3:+34722147 Msa0809050:five_prime_UTR
GATTTGAAAGGATCTTCACA+TGG 0.636840 5_3:+34724434 Msa0809050:CDS
CCTTCAGGCGCGACTTACGA+GGG 0.638477 5_3:+34722527 Msa0809050:CDS
TGGAGCTCCGATAGAAAACA+CGG 0.638988 5_3:+34722623 Msa0809050:CDS
CATTTGAATCCTTATAGCAG+CGG 0.641163 5_3:+34725825 Msa0809050:CDS
CATTGTGTGAAACCTATTGG+AGG 0.647839 5_3:+34724253 Msa0809050:CDS
AACGGCGTTATATCTGGGAA+GGG 0.647935 5_3:+34722767 Msa0809050:CDS
AACGTTTCCTCATCAACACA+GGG 0.651828 5_3:-34722913 None:intergenic
TCATGTTATGTGTAGATACA+CGG 0.652727 5_3:+34723303 Msa0809050:intron
TCATCAGATCACTGTAAGTG+GGG 0.653684 5_3:+34726185 Msa0809050:three_prime_UTR
GAAACCACCGTGAAGCTCGT+CGG 0.655705 5_3:-34722335 None:intergenic
ACGGTGATTTATACGAAGGG+TGG 0.664730 5_3:+34722669 Msa0809050:CDS
GTTGAGAGAGTACTTCCGAA+CGG 0.664758 5_3:+34722374 Msa0809050:CDS
AAGGGAAAATTGTTTCCCTG+AGG 0.665913 5_3:+34726437 Msa0809050:three_prime_UTR
TGTACAACGAAATTGGTACC+AGG 0.667243 5_3:+34724535 Msa0809050:CDS
AAACAAACCTTCTCCACCGG+CGG 0.669189 5_3:+34722265 Msa0809050:CDS
GGGAAGTATCTATGGACCGA+CGG 0.669212 5_3:+34722443 Msa0809050:CDS
TTCGAAAATGAGTGATACAG+TGG 0.669503 5_3:+34722178 Msa0809050:exon
CCGACGGTGATACATATCGC+GGG 0.670057 5_3:+34722597 Msa0809050:CDS
CGAACGGTGATTTATACGAA+GGG 0.671404 5_3:+34722666 Msa0809050:CDS
TGTGTTCCAGACAAATTGAG+CGG 0.672020 5_3:+34724664 Msa0809050:intron
GGAAGAAGCCGTTCACAAGG+AGG 0.676227 5_3:+34722296 Msa0809050:CDS
CCCGCGATATGTATCACCGT+CGG 0.676716 5_3:-34722597 None:intergenic
CATACTGAGAAGTTCATGCG+TGG 0.677957 5_3:+34724906 Msa0809050:CDS
GAATCCTTATAGCAGCGGGG+AGG 0.683149 5_3:+34725830 Msa0809050:CDS
TCCGACGGTGATACATATCG+CGG 0.684537 5_3:+34722596 Msa0809050:CDS
TTATATGTTGGCTATATGTG+GGG 0.684561 5_3:+34723702 Msa0809050:CDS
ACCTCAGAAGAGAAACAACA+AGG 0.687681 5_3:-34723118 None:intergenic
ATCTTTCCATCGAAACTCCG+CGG 0.690643 5_3:-34723440 None:intergenic
ACCTTCGTACATGCAACCGT+CGG 0.692042 5_3:-34722459 None:intergenic
ATATGCCAGCAAGAGCAGAA+CGG 0.698498 5_3:+34725754 Msa0809050:CDS
GGTGTTATGAAGATTCAACA+TGG 0.703414 5_3:+34722857 Msa0809050:CDS
TGGAAGCGTAACGTTCAAGA+CGG 0.706432 5_3:+34722692 Msa0809050:CDS
CGGAAGTACTCTCTCAACAA+CGG 0.711881 5_3:-34722369 None:intergenic
TTACGAGGGAGAGTTCAAGT+CGG 0.724697 5_3:+34722541 Msa0809050:CDS
GGAGCTCCGATAGAAAACAC+GGG 0.731752 5_3:+34722624 Msa0809050:CDS
ACCGACGGTTGCATGTACGA+AGG 0.732846 5_3:+34722458 Msa0809050:CDS
TACGAAGGTGAATGGAAACG+AGG 0.738714 5_3:+34722473 Msa0809050:CDS
TTTGAATCCTTATAGCAGCG+GGG 0.739961 5_3:+34725827 Msa0809050:CDS
TACCCCGCCTCATCAAACCG+CGG 0.741865 5_3:+34723423 Msa0809050:CDS
TCGTGCAACAGATAAACCTG+AGG 0.756825 5_3:+34724457 Msa0809050:CDS
GACACCGACGAGCTTCACGG+TGG 0.776234 5_3:+34722331 Msa0809050:CDS
TCCATCGCGATAAAACATCG+AGG 0.782224 5_3:-34723062 None:intergenic
ACGTTTCCTCATCAACACAG+GGG 0.812629 5_3:-34722912 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGATTTAATTTATCAAA+TGG + chr5_3:34725033-34725052 Msa0809050:intron 10.0%
!!! TTTGATTTCTAATATATTTT+TGG + chr5_3:34725458-34725477 Msa0809050:intron 10.0%
!!! TGTATTTTTTTTTTTTGAAA+TGG + chr5_3:34726338-34726357 Msa0809050:three_prime_UTR 10.0%
!!! GTATTTTTTTTTTTTGAAAT+GGG + chr5_3:34726339-34726358 Msa0809050:three_prime_UTR 10.0%
!!! TATTTTTTTTTTTTGAAATG+GGG + chr5_3:34726340-34726359 Msa0809050:three_prime_UTR 10.0%
!!! TATTTTTTTTCTTTCTTTCT+AGG + chr5_3:34724588-34724607 Msa0809050:intron 15.0%
!! CTTAAATTCAAATTCTTTAT+TGG + chr5_3:34725291-34725310 Msa0809050:intron 15.0%
!! AAACATGTATATGAAAAAAA+TGG + chr5_3:34726296-34726315 Msa0809050:three_prime_UTR 15.0%
!! AACATGTATATGAAAAAAAT+GGG + chr5_3:34726297-34726316 Msa0809050:three_prime_UTR 15.0%
!!! ATATGATGGAAAAAAAATAT+AGG + chr5_3:34726404-34726423 Msa0809050:three_prime_UTR 15.0%
!!! TCATTTTCGAATATATTTTC+CGG - chr5_3:34722169-34722188 None:intergenic 20.0%
!! AACAATAACAAAAACAACAA+GGG - chr5_3:34723231-34723250 None:intergenic 20.0%
!! TAACAATAACAAAAACAACA+AGG - chr5_3:34723232-34723251 None:intergenic 20.0%
!!! TTGTTTTAATGTTGATGTTT+TGG + chr5_3:34723523-34723542 Msa0809050:intron 20.0%
!!! TAAATAATCATTTTTCCACA+TGG - chr5_3:34723934-34723953 None:intergenic 20.0%
!!! ATTTAATTTATCAAATGGCT+GGG + chr5_3:34725038-34725057 Msa0809050:intron 20.0%
!! TTGTAATCTTGAGATATATT+AGG + chr5_3:34725162-34725181 Msa0809050:intron 20.0%
!! TGTAATCTTGAGATATATTA+GGG + chr5_3:34725163-34725182 Msa0809050:intron 20.0%
!! TAAAGAATTTGAATTTAAGC+CGG - chr5_3:34725290-34725309 None:intergenic 20.0%
!! TTCTTTATTGGCATTAAAAT+TGG + chr5_3:34725303-34725322 Msa0809050:intron 20.0%
!! AAAAATCCAGGAAAAATATT+TGG + chr5_3:34726117-34726136 Msa0809050:three_prime_UTR 20.0%
!!! ATTTTTTTAATCTAACCTCA+GGG - chr5_3:34726455-34726474 None:intergenic 20.0%
!! AAGACAAAAATTTCATTACA+TGG - chr5_3:34726603-34726622 None:intergenic 20.0%
!!! TGTTACTTTTTTGAAGTGTT+TGG - chr5_3:34722070-34722089 None:intergenic 25.0%
!! ATTTTCCTAGGATTTGTATT+TGG + chr5_3:34722984-34723003 Msa0809050:CDS 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG + chr5_3:34722985-34723004 Msa0809050:CDS 25.0%
!!! TTTGATGCTTAATTTGCAAT+TGG + chr5_3:34723186-34723205 Msa0809050:CDS 25.0%
!!! TTGATGCTTAATTTGCAATT+GGG + chr5_3:34723187-34723206 Msa0809050:CDS 25.0%
!! ATTATATGTTGGCTATATGT+GGG + chr5_3:34723701-34723720 Msa0809050:CDS 25.0%
! GATATATTATTGTAGCTGTA+TGG + chr5_3:34724296-34724315 Msa0809050:intron 25.0%
! AAATCAAATCGTCTATGAAT+TGG - chr5_3:34724419-34724438 None:intergenic 25.0%
! AAACTTACTTAATAAGATCC+TGG - chr5_3:34724556-34724575 None:intergenic 25.0%
! TTCCTTAAAATTAGTGTAGA+TGG + chr5_3:34725004-34725023 Msa0809050:intron 25.0%
!! ATCCATCTACACTAATTTTA+AGG - chr5_3:34725009-34725028 None:intergenic 25.0%
!! GATTTAATTTATCAAATGGC+TGG + chr5_3:34725037-34725056 Msa0809050:intron 25.0%
!! TAAAAGATTTCAACTGATTC+AGG - chr5_3:34725116-34725135 None:intergenic 25.0%
! ATCTCTTGAAAATATCAGAA+AGG + chr5_3:34725238-34725257 Msa0809050:intron 25.0%
! ATTATGTTGGCAAATTAAGT+GGG + chr5_3:34725367-34725386 Msa0809050:intron 25.0%
! AAAACATGATTGCAATCAAT+AGG - chr5_3:34725484-34725503 None:intergenic 25.0%
!! CAACAATCTTTTAACAGTTT+AGG - chr5_3:34725639-34725658 None:intergenic 25.0%
! TCTTCAGAAAATCATTAATC+AGG + chr5_3:34725721-34725740 Msa0809050:intron 25.0%
!! TATGATTGCGTTCTATATTT+TGG + chr5_3:34725855-34725874 Msa0809050:CDS 25.0%
!! ATGATTGCGTTCTATATTTT+GGG + chr5_3:34725856-34725875 Msa0809050:CDS 25.0%
! GAAGAATATTCATTGAAGAT+TGG + chr5_3:34726012-34726031 Msa0809050:CDS 25.0%
!! TATCCTCATTTTGTACTAAT+TGG - chr5_3:34726048-34726067 None:intergenic 25.0%
!! AAACTTCCAAATATTTTTCC+TGG - chr5_3:34726126-34726145 None:intergenic 25.0%
!!! TTTTTTTTTTTGAAATGGGG+TGG + chr5_3:34726343-34726362 Msa0809050:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAAATGGGGT+GGG + chr5_3:34726344-34726363 Msa0809050:three_prime_UTR 25.0%
!! GGGACTTATTTAATTTATTG+TGG + chr5_3:34726364-34726383 Msa0809050:three_prime_UTR 25.0%
! TGGAAAAAAAATATAGGAAG+AGG + chr5_3:34726410-34726429 Msa0809050:three_prime_UTR 25.0%
! GGAAAAAAAATATAGGAAGA+GGG + chr5_3:34726411-34726430 Msa0809050:three_prime_UTR 25.0%
! GAAAAAAAATATAGGAAGAG+GGG + chr5_3:34726412-34726431 Msa0809050:three_prime_UTR 25.0%
!!! CATTTTTTTAATCTAACCTC+AGG - chr5_3:34726456-34726475 None:intergenic 25.0%
! GGTTAGATTAAAAAAATGCT+TGG + chr5_3:34726458-34726477 Msa0809050:three_prime_UTR 25.0%
! AATGTACAGTTGTTATACAA+AGG + chr5_3:34726500-34726519 Msa0809050:three_prime_UTR 25.0%
! ATGTACAGTTGTTATACAAA+GGG + chr5_3:34726501-34726520 Msa0809050:three_prime_UTR 25.0%
! ATGAAGATTCAACATGGTTT+TGG + chr5_3:34722863-34722882 Msa0809050:CDS 30.0%
! TGAATGAGAAGAATTTTCCT+AGG + chr5_3:34722972-34722991 Msa0809050:CDS 30.0%
ATTTGTATTTGGGAATCTGA+AGG + chr5_3:34722995-34723014 Msa0809050:CDS 30.0%
!! CTGGTCAAACTATTTCTAAA+GGG + chr5_3:34723149-34723168 Msa0809050:CDS 30.0%
!! TGATGCTTAATTTGCAATTG+GGG + chr5_3:34723188-34723207 Msa0809050:CDS 30.0%
!! TTAATTTGCAATTGGGGATT+AGG + chr5_3:34723194-34723213 Msa0809050:CDS 30.0%
TCATGTTATGTGTAGATACA+CGG + chr5_3:34723303-34723322 Msa0809050:intron 30.0%
GAGTTATACCTAAAAACAAC+CGG - chr5_3:34723472-34723491 None:intergenic 30.0%
!!! TTAATGTTGATGTTTTGGTG+AGG + chr5_3:34723528-34723547 Msa0809050:intron 30.0%
GACCTGTGTTGAAATTAATT+CGG + chr5_3:34723552-34723571 Msa0809050:intron 30.0%
ACCTGTGTTGAAATTAATTC+GGG + chr5_3:34723553-34723572 Msa0809050:intron 30.0%
! TGAAATTAATTCGGGTGTTT+TGG + chr5_3:34723561-34723580 Msa0809050:intron 30.0%
!! GTTTTGGATGATTTTTGGAT+TGG + chr5_3:34723577-34723596 Msa0809050:intron 30.0%
TTTGATTCTTCAGACATTTG+AGG + chr5_3:34723653-34723672 Msa0809050:intron 30.0%
! GATTATATGTTGGCTATATG+TGG + chr5_3:34723700-34723719 Msa0809050:CDS 30.0%
! TTATATGTTGGCTATATGTG+GGG + chr5_3:34723702-34723721 Msa0809050:CDS 30.0%
AATCATGAATCTGTCATCTT+GGG - chr5_3:34723785-34723804 None:intergenic 30.0%
TAATCATGAATCTGTCATCT+TGG - chr5_3:34723786-34723805 None:intergenic 30.0%
!! GTGTCTTGTTGAATTTTACA+CGG + chr5_3:34723870-34723889 Msa0809050:intron 30.0%
!! TGTCTTGTTGAATTTTACAC+GGG + chr5_3:34723871-34723890 Msa0809050:intron 30.0%
TAAGAACAAAACATACCATG+TGG + chr5_3:34723916-34723935 Msa0809050:intron 30.0%
! ATTTCTGACTTCCAACTTTT+AGG + chr5_3:34724150-34724169 Msa0809050:intron 30.0%
TCCAATAACAATGAAAAGTC+AGG - chr5_3:34724347-34724366 None:intergenic 30.0%
TGTTATTGGAAAATCAGATC+CGG + chr5_3:34724357-34724376 Msa0809050:intron 30.0%
!! CATAGACGATTTGATTTGAA+AGG + chr5_3:34724422-34724441 Msa0809050:CDS 30.0%
AATACGTATCTGACAAGTTA+TGG + chr5_3:34724638-34724657 Msa0809050:intron 30.0%
CTTGGAAAACGAGAAAATTA+TGG + chr5_3:34724698-34724717 Msa0809050:CDS 30.0%
!! AATTATGGACTACAGTCTTT+TGG + chr5_3:34724713-34724732 Msa0809050:CDS 30.0%
TGACAACACTTATGACAAAA+TGG + chr5_3:34724755-34724774 Msa0809050:CDS 30.0%
GACAACACTTATGACAAAAT+GGG + chr5_3:34724756-34724775 Msa0809050:CDS 30.0%
ACAACACTTATGACAAAATG+GGG + chr5_3:34724757-34724776 Msa0809050:CDS 30.0%
!! AAGCTTTTCCAATTTAGCTT+TGG - chr5_3:34725082-34725101 None:intergenic 30.0%
ATCAGAAAGGAATAAGTTGT+AGG + chr5_3:34725251-34725270 Msa0809050:intron 30.0%
! GTAAGTAGTTTGCATTATGT+TGG + chr5_3:34725354-34725373 Msa0809050:intron 30.0%
CATTATGTTGGCAAATTAAG+TGG + chr5_3:34725366-34725385 Msa0809050:intron 30.0%
AAAGAACATGAATGCAAAGA+AGG - chr5_3:34725514-34725533 None:intergenic 30.0%
GTTGTCTGTATATGGTATAT+GGG - chr5_3:34725547-34725566 None:intergenic 30.0%
TGTTGTCTGTATATGGTATA+TGG - chr5_3:34725548-34725567 None:intergenic 30.0%
CTGAAATTGTTGTCTGTATA+TGG - chr5_3:34725555-34725574 None:intergenic 30.0%
CTTAATACATGTCACGAAAT+TGG - chr5_3:34725688-34725707 None:intergenic 30.0%
TTTCGTGACATGTATTAAGT+AGG + chr5_3:34725689-34725708 Msa0809050:intron 30.0%
AGAAAATCATTAATCAGGCT+AGG + chr5_3:34725726-34725745 Msa0809050:intron 30.0%
!! GATTTTGATCAATACACCAA+TGG + chr5_3:34725792-34725811 Msa0809050:CDS 30.0%
! TGATTGCGTTCTATATTTTG+GGG + chr5_3:34725857-34725876 Msa0809050:CDS 30.0%
ATCCAAAGCTATACTCAAAA+AGG + chr5_3:34725973-34725992 Msa0809050:CDS 30.0%
!!! AACCTTTTTGAGTATAGCTT+TGG - chr5_3:34725978-34725997 None:intergenic 30.0%
! AAAAGGTTTCGAGATTTTGT+TGG + chr5_3:34725990-34726009 Msa0809050:CDS 30.0%
TGACCAATTAGTACAAAATG+AGG + chr5_3:34726042-34726061 Msa0809050:three_prime_UTR 30.0%
GATAAAATATCTTCTCCTGA+AGG + chr5_3:34726064-34726083 Msa0809050:three_prime_UTR 30.0%
TTTGTGATCATCATGATTCA+TGG - chr5_3:34726100-34726119 None:intergenic 30.0%
AATTTATTGTGGTCACCAAT+AGG + chr5_3:34726375-34726394 Msa0809050:three_prime_UTR 30.0%
CCATCATATTCATATCCTAT+TGG - chr5_3:34726393-34726412 None:intergenic 30.0%
CCAATAGGATATGAATATGA+TGG + chr5_3:34726390-34726409 Msa0809050:three_prime_UTR 30.0%
TAGAAAGCAAAGAAGAGAAG+AGG - chr5_3:34722027-34722046 None:intergenic 35.0%
TTCGAAAATGAGTGATACAG+TGG + chr5_3:34722178-34722197 Msa0809050:exon 35.0%
AAGAATGGGAATGAGTATGT+TGG + chr5_3:34722734-34722753 Msa0809050:CDS 35.0%
TTCATAACACCTTGTCCTTT+CGG - chr5_3:34722848-34722867 None:intergenic 35.0%
! GGTGTTATGAAGATTCAACA+TGG + chr5_3:34722857-34722876 Msa0809050:CDS 35.0%
!!! AAGATTCAACATGGTTTTGG+TGG + chr5_3:34722866-34722885 Msa0809050:CDS 35.0%
!!! AGATTCAACATGGTTTTGGT+GGG + chr5_3:34722867-34722886 Msa0809050:CDS 35.0%
TCTGTTGATACTACTGTTAG+TGG + chr5_3:34722938-34722957 Msa0809050:CDS 35.0%
ATACTACTGTTAGTGGTAGA+GGG + chr5_3:34722945-34722964 Msa0809050:CDS 35.0%
GATTCCCAAATACAAATCCT+AGG - chr5_3:34722992-34723011 None:intergenic 35.0%
! CCTTTAGAAATAGTTTGACC+AGG - chr5_3:34723151-34723170 None:intergenic 35.0%
!! CCTGGTCAAACTATTTCTAA+AGG + chr5_3:34723148-34723167 Msa0809050:CDS 35.0%
TTATGTGTAGATACACGGTT+GGG + chr5_3:34723308-34723327 Msa0809050:intron 35.0%
!! ACCTAGTGATTTTGATCCTA+AGG + chr5_3:34723360-34723379 Msa0809050:CDS 35.0%
TCCTTAGGATCAAAATCACT+AGG - chr5_3:34723364-34723383 None:intergenic 35.0%
!!! ATTACTGTCCGGTTGTTTTT+AGG + chr5_3:34723461-34723480 Msa0809050:CDS 35.0%
ACCCGAATTAATTTCAACAC+AGG - chr5_3:34723557-34723576 None:intergenic 35.0%
! TGATCCTGCTGATTATATGT+TGG + chr5_3:34723690-34723709 Msa0809050:CDS 35.0%
ATAGCCAACATATAATCAGC+AGG - chr5_3:34723697-34723716 None:intergenic 35.0%
! AGTGAAGAAATCTGAAGTCA+AGG + chr5_3:34723810-34723829 Msa0809050:CDS 35.0%
! TGTTGAATTTTACACGGGTT+TGG + chr5_3:34723876-34723895 Msa0809050:intron 35.0%
! GTTGAATTTTACACGGGTTT+GGG + chr5_3:34723877-34723896 Msa0809050:intron 35.0%
CTTACAAAACCTAAGTTGTC+TGG - chr5_3:34724007-34724026 None:intergenic 35.0%
!! CAGACAACTTAGGTTTTGTA+AGG + chr5_3:34724005-34724024 Msa0809050:intron 35.0%
!! ACAACTTAGGTTTTGTAAGG+AGG + chr5_3:34724008-34724027 Msa0809050:intron 35.0%
GTAAGAATCTACGTTTAACC+GGG - chr5_3:34724064-34724083 None:intergenic 35.0%
GGTAAGAATCTACGTTTAAC+CGG - chr5_3:34724065-34724084 None:intergenic 35.0%
! TGCGTAACTTGCGTTATAAA+AGG - chr5_3:34724086-34724105 None:intergenic 35.0%
GTTACGCAATTACAAGTCTT+TGG + chr5_3:34724098-34724117 Msa0809050:intron 35.0%
GTCCAAATATGAGAATTCAC+TGG + chr5_3:34724210-34724229 Msa0809050:CDS 35.0%
CACCAGTGAATTCTCATATT+TGG - chr5_3:34724215-34724234 None:intergenic 35.0%
TCACTGGTGACAAAATTCTT+TGG + chr5_3:34724226-34724245 Msa0809050:CDS 35.0%
CACTGGTGACAAAATTCTTT+GGG + chr5_3:34724227-34724246 Msa0809050:CDS 35.0%
ACTGGTGACAAAATTCTTTG+GGG + chr5_3:34724228-34724247 Msa0809050:CDS 35.0%
GTACATTGTGTGAAACCTAT+TGG + chr5_3:34724250-34724269 Msa0809050:CDS 35.0%
! ATCTATCGATCCATACCTTT+TGG - chr5_3:34724279-34724298 None:intergenic 35.0%
! GCCTGACTTTTCATTGTTAT+TGG + chr5_3:34724343-34724362 Msa0809050:intron 35.0%
GATTTGAAAGGATCTTCACA+TGG + chr5_3:34724434-34724453 Msa0809050:CDS 35.0%
GAAACACATAGTTCAGATCA+AGG - chr5_3:34724514-34724533 None:intergenic 35.0%
TGTTTCGTGTACAACGAAAT+TGG + chr5_3:34724528-34724547 Msa0809050:CDS 35.0%
CGTATTCTATAACGATTCAC+TGG - chr5_3:34724624-34724643 None:intergenic 35.0%
TGTTGTCATCACGAAAATGA+AGG - chr5_3:34724743-34724762 None:intergenic 35.0%
AACACTCACTATAGAGCATA+TGG + chr5_3:34724815-34724834 Msa0809050:intron 35.0%
CACTATAGAGCATATGGTTA+TGG + chr5_3:34724821-34724840 Msa0809050:intron 35.0%
AGAATCCTGATTGCCTAAAA+GGG - chr5_3:34724883-34724902 None:intergenic 35.0%
AAGAATCCTGATTGCCTAAA+AGG - chr5_3:34724884-34724903 None:intergenic 35.0%
ACTTGCAACCAAAGCTAAAT+TGG + chr5_3:34725071-34725090 Msa0809050:intron 35.0%
AGCTAAATTGGAAAAGCTTC+AGG + chr5_3:34725083-34725102 Msa0809050:intron 35.0%
GCTAAATTGGAAAAGCTTCA+GGG + chr5_3:34725084-34725103 Msa0809050:intron 35.0%
CTAAATTGGAAAAGCTTCAG+GGG + chr5_3:34725085-34725104 Msa0809050:intron 35.0%
!! TTAAGTGGGTATAGTTTTGC+AGG + chr5_3:34725381-34725400 Msa0809050:intron 35.0%
TTGCAGGAAATAGTTGTTTG+TGG + chr5_3:34725397-34725416 Msa0809050:intron 35.0%
TGCAGGAAATAGTTGTTTGT+GGG + chr5_3:34725398-34725417 Msa0809050:intron 35.0%
TTTGATCAATACACCAATGG+TGG + chr5_3:34725795-34725814 Msa0809050:CDS 35.0%
CATTTGAATCCTTATAGCAG+CGG + chr5_3:34725825-34725844 Msa0809050:CDS 35.0%
ATTTGAATCCTTATAGCAGC+GGG + chr5_3:34725826-34725845 Msa0809050:CDS 35.0%
! TGGGGTTATCGATATTTTAC+AGG + chr5_3:34725875-34725894 Msa0809050:CDS 35.0%
!!! CATGGCATTTTTTAACCTTC+AGG - chr5_3:34726082-34726101 None:intergenic 35.0%
CATGATGATCACAAAAATCC+AGG + chr5_3:34726105-34726124 Msa0809050:three_prime_UTR 35.0%
CTGATGAACAGTAAACTCTA+AGG - chr5_3:34726172-34726191 None:intergenic 35.0%
TTCATCAGATCACTGTAAGT+GGG + chr5_3:34726184-34726203 Msa0809050:three_prime_UTR 35.0%
AACTCAAGTGAGATTCTTTG+AGG - chr5_3:34726211-34726230 None:intergenic 35.0%
TCAAAGAATCTCACTTGAGT+TGG + chr5_3:34726210-34726229 Msa0809050:three_prime_UTR 35.0%
!!! CTTGAGTTGGTGTTGTTTTT+TGG + chr5_3:34726223-34726242 Msa0809050:three_prime_UTR 35.0%
TACAGTTGTTATACAAAGGG+TGG + chr5_3:34726504-34726523 Msa0809050:three_prime_UTR 35.0%
GTGTTTGGAGAAAAACGAGT+GGG - chr5_3:34722055-34722074 None:intergenic 40.0%
AGTGTTTGGAGAAAAACGAG+TGG - chr5_3:34722056-34722075 None:intergenic 40.0%
! TCAATGCTCAGTGCATTTTC+CGG - chr5_3:34722139-34722158 None:intergenic 40.0%
! TTCGAATATATTTTCCGGCG+AGG - chr5_3:34722164-34722183 None:intergenic 40.0%
!! GAAGGTTTGTTTTCCTTCTC+CGG - chr5_3:34722257-34722276 None:intergenic 40.0%
! CAGGGAAAGGGAAATTTTCA+TGG + chr5_3:34722504-34722523 Msa0809050:CDS 40.0%
CGAACGGTGATTTATACGAA+GGG + chr5_3:34722666-34722685 Msa0809050:CDS 40.0%
GACGTTACGTTTGGAAGAAT+GGG + chr5_3:34722720-34722739 Msa0809050:CDS 40.0%
! GGAATGAGTATGTTGGTGAA+TGG + chr5_3:34722741-34722760 Msa0809050:CDS 40.0%
! TATGTTGGTGAATGGCGTAA+CGG + chr5_3:34722749-34722768 Msa0809050:CDS 40.0%
! GGTTCGTTAGTTTGGGTTAA+CGG + chr5_3:34722788-34722807 Msa0809050:CDS 40.0%
!!! ATGGTTTTGGTGGGTTTGTT+TGG + chr5_3:34722876-34722895 Msa0809050:CDS 40.0%
AACGTTTCCTCATCAACACA+GGG - chr5_3:34722916-34722935 None:intergenic 40.0%
GATACTACTGTTAGTGGTAG+AGG + chr5_3:34722944-34722963 Msa0809050:CDS 40.0%
!! TCCTTGTTGTTTCTCTTCTG+AGG + chr5_3:34723117-34723136 Msa0809050:CDS 40.0%
ACCTCAGAAGAGAAACAACA+AGG - chr5_3:34723121-34723140 None:intergenic 40.0%
GTTATGTGTAGATACACGGT+TGG + chr5_3:34723307-34723326 Msa0809050:intron 40.0%
TTGATCCTAAGGAGAAGTTC+TGG + chr5_3:34723371-34723390 Msa0809050:CDS 40.0%
GTAATCTTGGATCCTTCACT+CGG - chr5_3:34723406-34723425 None:intergenic 40.0%
TCGATGGAAAGATTACTGTC+CGG + chr5_3:34723450-34723469 Msa0809050:CDS 40.0%
!! CGGGTGTTTTGGATGATTTT+TGG + chr5_3:34723572-34723591 Msa0809050:intron 40.0%
! ACATTTGAGGAAGCTGTTTC+AGG + chr5_3:34723666-34723685 Msa0809050:CDS 40.0%
CGATTTGACTAACAGTTGAC+TGG - chr5_3:34723976-34723995 None:intergenic 40.0%
GTTAGTAGACCAGACAACTT+AGG + chr5_3:34723995-34724014 Msa0809050:intron 40.0%
!! TTAGGTTTTGTAAGGAGGTC+TGG + chr5_3:34724013-34724032 Msa0809050:intron 40.0%
TTGTCGCTATTCGAATATCC+CGG + chr5_3:34724043-34724062 Msa0809050:intron 40.0%
!! CCAACTTTTAGGTGCTTCTT+CGG + chr5_3:34724161-34724180 Msa0809050:intron 40.0%
CATTGTGTGAAACCTATTGG+AGG + chr5_3:34724253-34724272 Msa0809050:CDS 40.0%
ACAATGAAAAGTCAGGCACA+GGG - chr5_3:34724340-34724359 None:intergenic 40.0%
AACAATGAAAAGTCAGGCAC+AGG - chr5_3:34724341-34724360 None:intergenic 40.0%
TCAGATCCGGTTTATTGTGA+TGG + chr5_3:34724370-34724389 Msa0809050:intron 40.0%
CAGATCCGGTTTATTGTGAT+GGG + chr5_3:34724371-34724390 Msa0809050:intron 40.0%
GATTGCCCATCACAATAAAC+CGG - chr5_3:34724379-34724398 None:intergenic 40.0%
GTTTCATCAATCTCATCCTC+AGG - chr5_3:34724476-34724495 None:intergenic 40.0%
GTTCAGATCAAGGTCTTTGA+GGG - chr5_3:34724504-34724523 None:intergenic 40.0%
AGTTCAGATCAAGGTCTTTG+AGG - chr5_3:34724505-34724524 None:intergenic 40.0%
TGTACAACGAAATTGGTACC+AGG + chr5_3:34724535-34724554 Msa0809050:CDS 40.0%
TGTGTTCCAGACAAATTGAG+CGG + chr5_3:34724664-34724683 Msa0809050:intron 40.0%
!! ATGGACTACAGTCTTTTGGT+TGG + chr5_3:34724717-34724736 Msa0809050:CDS 40.0%
ATACCAGTGCGTAGAAGAAA+AGG - chr5_3:34724789-34724808 None:intergenic 40.0%
! GCGATATTCTTTCCCCTTTT+AGG + chr5_3:34724867-34724886 Msa0809050:intron 40.0%
GAATCCTGATTGCCTAAAAG+GGG - chr5_3:34724882-34724901 None:intergenic 40.0%
GATAGGGATCGAGTTAAATC+TGG + chr5_3:34724957-34724976 Msa0809050:CDS 40.0%
TATATTAGGGCTTGTGCTGT+TGG + chr5_3:34725176-34725195 Msa0809050:intron 40.0%
TTTCTGTTACTCTGTGTGTG+TGG + chr5_3:34725576-34725595 Msa0809050:intron 40.0%
CGCTGCTATAAGGATTCAAA+TGG - chr5_3:34725827-34725846 None:intergenic 40.0%
TTTGAATCCTTATAGCAGCG+GGG + chr5_3:34725827-34725846 Msa0809050:CDS 40.0%
TTGAAACCCACTTGCAAAAG+AGG + chr5_3:34726144-34726163 Msa0809050:three_prime_UTR 40.0%
TGAAACCCACTTGCAAAAGA+GGG + chr5_3:34726145-34726164 Msa0809050:three_prime_UTR 40.0%
GTTCATCAGATCACTGTAAG+TGG + chr5_3:34726183-34726202 Msa0809050:three_prime_UTR 40.0%
TCATCAGATCACTGTAAGTG+GGG + chr5_3:34726185-34726204 Msa0809050:three_prime_UTR 40.0%
CCAGCAAATCATCATCATCA+TGG - chr5_3:34726268-34726287 None:intergenic 40.0%
! CCATGATGATGATGATTTGC+TGG + chr5_3:34726265-34726284 Msa0809050:three_prime_UTR 40.0%
!! TGATGATGATTTGCTGGATC+AGG + chr5_3:34726271-34726290 Msa0809050:three_prime_UTR 40.0%
!! GATGATGATTTGCTGGATCA+GGG + chr5_3:34726272-34726291 Msa0809050:three_prime_UTR 40.0%
AAATATAGGAAGAGGGGTGA+AGG + chr5_3:34726418-34726437 Msa0809050:three_prime_UTR 40.0%
AATATAGGAAGAGGGGTGAA+GGG + chr5_3:34726419-34726438 Msa0809050:three_prime_UTR 40.0%
AAGGGAAAATTGTTTCCCTG+AGG + chr5_3:34726437-34726456 Msa0809050:three_prime_UTR 40.0%
GTTGTTATACAAAGGGTGGA+TGG + chr5_3:34726508-34726527 Msa0809050:three_prime_UTR 40.0%
GGAAAACAAACCTTCTCCAC+CGG + chr5_3:34722262-34722281 Msa0809050:CDS 45.0%
CTCAACAACGGATCTACCAT+CGG - chr5_3:34722360-34722379 None:intergenic 45.0%
!! CGGAAGTACTCTCTCAACAA+CGG - chr5_3:34722372-34722391 None:intergenic 45.0%
!! GTTGAGAGAGTACTTCCGAA+CGG + chr5_3:34722374-34722393 Msa0809050:CDS 45.0%
AGATACTTCCCGGATCCATT+CGG - chr5_3:34722434-34722453 None:intergenic 45.0%
!! ATGGATCCGGGAAGTATCTA+TGG + chr5_3:34722435-34722454 Msa0809050:CDS 45.0%
GTTGCATGTACGAAGGTGAA+TGG + chr5_3:34722465-34722484 Msa0809050:CDS 45.0%
TACGAAGGTGAATGGAAACG+AGG + chr5_3:34722473-34722492 Msa0809050:CDS 45.0%
TGGAAACGAGGAAAAGCTTC+AGG + chr5_3:34722485-34722504 Msa0809050:CDS 45.0%
GGAAACGAGGAAAAGCTTCA+GGG + chr5_3:34722486-34722505 Msa0809050:CDS 45.0%
GAGGAAAAGCTTCAGGGAAA+GGG + chr5_3:34722492-34722511 Msa0809050:CDS 45.0%
! GGGAAATTTTCATGGCCTTC+AGG + chr5_3:34722512-34722531 Msa0809050:CDS 45.0%
TTACGAGGGAGAGTTCAAGT+CGG + chr5_3:34722541-34722560 Msa0809050:CDS 45.0%
GAAGGATTCGGAACATTCGT+TGG + chr5_3:34722572-34722591 Msa0809050:CDS 45.0%
TGGAGCTCCGATAGAAAACA+CGG + chr5_3:34722623-34722642 Msa0809050:CDS 45.0%
TCCGATAGAAAACACGGGTT+CGG + chr5_3:34722629-34722648 Msa0809050:CDS 45.0%
! ACCGAACCCGTGTTTTCTAT+CGG - chr5_3:34722633-34722652 None:intergenic 45.0%
GCGAACGGTGATTTATACGA+AGG + chr5_3:34722665-34722684 Msa0809050:CDS 45.0%
ACGGTGATTTATACGAAGGG+TGG + chr5_3:34722669-34722688 Msa0809050:CDS 45.0%
GTGATTTATACGAAGGGTGG+TGG + chr5_3:34722672-34722691 Msa0809050:CDS 45.0%
! TGGAAGCGTAACGTTCAAGA+CGG + chr5_3:34722692-34722711 Msa0809050:CDS 45.0%
GGACGTTACGTTTGGAAGAA+TGG + chr5_3:34722719-34722738 Msa0809050:CDS 45.0%
TAACGGCGTTATATCTGGGA+AGG + chr5_3:34722766-34722785 Msa0809050:CDS 45.0%
AACGGCGTTATATCTGGGAA+GGG + chr5_3:34722767-34722786 Msa0809050:CDS 45.0%
! TGGGAAGGGTTCGTTAGTTT+GGG + chr5_3:34722781-34722800 Msa0809050:CDS 45.0%
TTGGGTTAACGGAAACCGTT+TGG + chr5_3:34722799-34722818 Msa0809050:CDS 45.0%
GTTAACGGAAACCGTTTGGA+GGG + chr5_3:34722803-34722822 Msa0809050:CDS 45.0%
AAACCGTTTGGAGGGTTTGT+GGG + chr5_3:34722811-34722830 Msa0809050:CDS 45.0%
AATGGTGTTCCGAAAGGACA+AGG + chr5_3:34722836-34722855 Msa0809050:CDS 45.0%
!! ATTTTGCCCCTGTGTTGATG+AGG + chr5_3:34722906-34722925 Msa0809050:CDS 45.0%
ACGTTTCCTCATCAACACAG+GGG - chr5_3:34722915-34722934 None:intergenic 45.0%
GAACGTTTCCTCATCAACAC+AGG - chr5_3:34722917-34722936 None:intergenic 45.0%
TCCATCGCGATAAAACATCG+AGG - chr5_3:34723065-34723084 None:intergenic 45.0%
GGATGCTTTCGAAACTCATC+AGG - chr5_3:34723100-34723119 None:intergenic 45.0%
!! TCTTCTGAGGTTAAGAGACC+TGG + chr5_3:34723130-34723149 Msa0809050:CDS 45.0%
CTTGTCCAGAACTTCTCCTT+AGG - chr5_3:34723379-34723398 None:intergenic 45.0%
!! CTAAGGAGAAGTTCTGGACA+AGG + chr5_3:34723377-34723396 Msa0809050:CDS 45.0%
ATCTTTCCATCGAAACTCCG+CGG - chr5_3:34723443-34723462 None:intergenic 45.0%
CTTAGAGAACTTTCCTCTCC+CGG + chr5_3:34723733-34723752 Msa0809050:CDS 45.0%
TTAGAGAACTTTCCTCTCCC+GGG + chr5_3:34723734-34723753 Msa0809050:CDS 45.0%
!! AAAACACTTCCGCTTTTCCC+GGG - chr5_3:34723754-34723773 None:intergenic 45.0%
!! GAAAACACTTCCGCTTTTCC+CGG - chr5_3:34723755-34723774 None:intergenic 45.0%
!! CCGAAGAAGCACCTAAAAGT+TGG - chr5_3:34724164-34724183 None:intergenic 45.0%
GAAACCTATTGGAGGCCAAA+AGG + chr5_3:34724261-34724280 Msa0809050:CDS 45.0%
! CATACCTTTTGGCCTCCAAT+AGG - chr5_3:34724268-34724287 None:intergenic 45.0%
CTATTGGAGGCCAAAAGGTA+TGG + chr5_3:34724266-34724285 Msa0809050:intron 45.0%
TCGTGCAACAGATAAACCTG+AGG + chr5_3:34724457-34724476 Msa0809050:CDS 45.0%
GTGTTCCAGACAAATTGAGC+GGG + chr5_3:34724665-34724684 Msa0809050:intron 45.0%
ACAATCCCGCTCAATTTGTC+TGG - chr5_3:34724673-34724692 None:intergenic 45.0%
! TCACCTTTTCTTCTACGCAC+TGG + chr5_3:34724783-34724802 Msa0809050:CDS 45.0%
! CTTTCCCCTTTTAGGCAATC+AGG + chr5_3:34724875-34724894 Msa0809050:intron 45.0%
CATACTGAGAAGTTCATGCG+TGG + chr5_3:34724906-34724925 Msa0809050:CDS 45.0%
TCGAAGCAGAGTTGCAAGAT+AGG + chr5_3:34724940-34724959 Msa0809050:CDS 45.0%
CGAAGCAGAGTTGCAAGATA+GGG + chr5_3:34724941-34724960 Msa0809050:CDS 45.0%
GGGATCGAGTTAAATCTGGA+AGG + chr5_3:34724961-34724980 Msa0809050:CDS 45.0%
TTTAAGCCGGCATGTGTTAC+AGG - chr5_3:34725277-34725296 None:intergenic 45.0%
TTCTGCTCTTGCTGGCATAT+TGG - chr5_3:34725754-34725773 None:intergenic 45.0%
ATATGCCAGCAAGAGCAGAA+CGG + chr5_3:34725754-34725773 Msa0809050:CDS 45.0%
! CAAATGGCTGATTCCACCAT+TGG - chr5_3:34725811-34725830 None:intergenic 45.0%
! AAGGTCCCTCTTTTGCAAGT+GGG - chr5_3:34726153-34726172 None:intergenic 45.0%
! TAAGGTCCCTCTTTTGCAAG+TGG - chr5_3:34726154-34726173 None:intergenic 45.0%
AAATAAAACAGCCTCGCCGC+CGG + chr5_3:34722102-34722121 Msa0809050:five_prime_UTR 50.0%
!! ACTGAGCATTGATTCCTCGC+CGG + chr5_3:34722147-34722166 Msa0809050:five_prime_UTR 50.0%
GAAGAGCAACATTCCTGAGC+CGG + chr5_3:34722235-34722254 Msa0809050:CDS 50.0%
! TTGTTTTCCTTCTCCGGCTC+AGG - chr5_3:34722251-34722270 None:intergenic 50.0%
AAACAAACCTTCTCCACCGG+CGG + chr5_3:34722265-34722284 Msa0809050:CDS 50.0%
GTCTACCACCTCCTTGTGAA+CGG - chr5_3:34722307-34722326 None:intergenic 50.0%
TTCTACGCCGGAAGTTTCTC+CGG + chr5_3:34722401-34722420 Msa0809050:CDS 50.0%
TACGTTGCCGGAGAAACTTC+CGG - chr5_3:34722411-34722430 None:intergenic 50.0%
GTCGGTCCATAGATACTTCC+CGG - chr5_3:34722444-34722463 None:intergenic 50.0%
!! GGGAAGTATCTATGGACCGA+CGG + chr5_3:34722443-34722462 Msa0809050:CDS 50.0%
ACCTTCGTACATGCAACCGT+CGG - chr5_3:34722462-34722481 None:intergenic 50.0%
CGAGGAAAAGCTTCAGGGAA+AGG + chr5_3:34722491-34722510 Msa0809050:CDS 50.0%
TACGAGGGAGAGTTCAAGTC+GGG + chr5_3:34722542-34722561 Msa0809050:CDS 50.0%
AGAGTTCAAGTCGGGTCGAA+TGG + chr5_3:34722550-34722569 Msa0809050:CDS 50.0%
TTCAAGTCGGGTCGAATGGA+AGG + chr5_3:34722554-34722573 Msa0809050:CDS 50.0%
TCGGGTCGAATGGAAGGATT+CGG + chr5_3:34722560-34722579 Msa0809050:CDS 50.0%
GGAACATTCGTTGGATCCGA+CGG + chr5_3:34722581-34722600 Msa0809050:CDS 50.0%
TCCGACGGTGATACATATCG+CGG + chr5_3:34722596-34722615 Msa0809050:CDS 50.0%
GTGATACATATCGCGGGTCA+TGG + chr5_3:34722603-34722622 Msa0809050:CDS 50.0%
GGAGCTCCGATAGAAAACAC+GGG + chr5_3:34722624-34722643 Msa0809050:CDS 50.0%
GGTCAGAAACGTTACGCGAA+CGG + chr5_3:34722650-34722669 Msa0809050:CDS 50.0%
CGTAACGTTCAAGACGGTCA+AGG + chr5_3:34722698-34722717 Msa0809050:CDS 50.0%
ACGGTCAAGGACGTTACGTT+TGG + chr5_3:34722711-34722730 Msa0809050:CDS 50.0%
TGGCGTAACGGCGTTATATC+TGG + chr5_3:34722761-34722780 Msa0809050:CDS 50.0%
GGCGTAACGGCGTTATATCT+GGG + chr5_3:34722762-34722781 Msa0809050:CDS 50.0%
CTGGGAAGGGTTCGTTAGTT+TGG + chr5_3:34722780-34722799 Msa0809050:CDS 50.0%
GGTTAACGGAAACCGTTTGG+AGG + chr5_3:34722802-34722821 Msa0809050:CDS 50.0%
GAAACCGTTTGGAGGGTTTG+TGG + chr5_3:34722810-34722829 Msa0809050:CDS 50.0%
TCTCCCACAAACCCTCCAAA+CGG - chr5_3:34722817-34722836 None:intergenic 50.0%
TTGGAGGGTTTGTGGGAGAA+TGG + chr5_3:34722818-34722837 Msa0809050:CDS 50.0%
TGGGAGAATGGTGTTCCGAA+AGG + chr5_3:34722830-34722849 Msa0809050:CDS 50.0%
TGGGAATCTGAAGGTGAAGC+TGG + chr5_3:34723004-34723023 Msa0809050:CDS 50.0%
! GCCTCGATGTTTTATCGCGA+TGG + chr5_3:34723061-34723080 Msa0809050:CDS 50.0%
GTGTAGATACACGGTTGGGA+AGG + chr5_3:34723312-34723331 Msa0809050:intron 50.0%
TGGACAAGGTTTCCGAGTGA+AGG + chr5_3:34723391-34723410 Msa0809050:CDS 50.0%
TTGATGAGGCGGGGTAATCT+TGG - chr5_3:34723419-34723438 None:intergenic 50.0%
ATCAAACCGCGGAGTTTCGA+TGG + chr5_3:34723434-34723453 Msa0809050:CDS 50.0%
AGTCAGGCACAGGGAAACAT+GGG - chr5_3:34724331-34724350 None:intergenic 50.0%
AAGTCAGGCACAGGGAAACA+TGG - chr5_3:34724332-34724351 None:intergenic 50.0%
! CAGATCAAGGTCTTTGAGGG+TGG - chr5_3:34724501-34724520 None:intergenic 50.0%
TGAGCGGGATTGTGAGTTCT+TGG + chr5_3:34724680-34724699 Msa0809050:CDS 50.0%
TGTAGGCCTGTAACACATGC+CGG + chr5_3:34725268-34725287 Msa0809050:intron 50.0%
TGTGGGACATATGCAAGCTG+TGG + chr5_3:34725415-34725434 Msa0809050:intron 50.0%
! TTTTCCGGCGAGATTCGTGC+CGG - chr5_3:34722124-34722143 None:intergenic 55.0%
CAACATTCCTGAGCCGGAGA+AGG + chr5_3:34722241-34722260 Msa0809050:CDS 55.0%
CTTCTTCCAGCAATCACCGC+CGG - chr5_3:34722284-34722303 None:intergenic 55.0%
GCTGGAAGAAGCCGTTCACA+AGG + chr5_3:34722293-34722312 Msa0809050:CDS 55.0%
GGAAGAAGCCGTTCACAAGG+AGG + chr5_3:34722296-34722315 Msa0809050:CDS 55.0%
AGAAGCCGTTCACAAGGAGG+TGG + chr5_3:34722299-34722318 Msa0809050:CDS 55.0%
AGTGACACCGACGAGCTTCA+CGG + chr5_3:34722328-34722347 Msa0809050:CDS 55.0%
GAAACCACCGTGAAGCTCGT+CGG - chr5_3:34722338-34722357 None:intergenic 55.0%
AGCTTCACGGTGGTTTCCGA+TGG + chr5_3:34722341-34722360 Msa0809050:CDS 55.0%
CCGGCGTAGAAATCTCCGTT+CGG - chr5_3:34722392-34722411 None:intergenic 55.0%
CCGAACGGAGATTTCTACGC+CGG + chr5_3:34722389-34722408 Msa0809050:CDS 55.0%
TTCTCCGGCAACGTACCGAA+TGG + chr5_3:34722416-34722435 Msa0809050:CDS 55.0%
GGATCCATTCGGTACGTTGC+CGG - chr5_3:34722423-34722442 None:intergenic 55.0%
GGCAACGTACCGAATGGATC+CGG + chr5_3:34722422-34722441 Msa0809050:CDS 55.0%
GCAACGTACCGAATGGATCC+GGG + chr5_3:34722423-34722442 Msa0809050:CDS 55.0%
ACCGACGGTTGCATGTACGA+AGG + chr5_3:34722458-34722477 Msa0809050:CDS 55.0%
CCCGCGATATGTATCACCGT+CGG - chr5_3:34722600-34722619 None:intergenic 55.0%
CCGACGGTGATACATATCGC+GGG + chr5_3:34722597-34722616 Msa0809050:CDS 55.0%
AACTCCGCGGTTTGATGAGG+CGG - chr5_3:34723430-34723449 None:intergenic 55.0%
CGAAACTCCGCGGTTTGATG+AGG - chr5_3:34723433-34723452 None:intergenic 55.0%
CTTTCCTCTCCCGGGAAAAG+CGG + chr5_3:34723742-34723761 Msa0809050:CDS 55.0%
CAAGAGCAGAACGGTTGGCA+AGG + chr5_3:34725763-34725782 Msa0809050:CDS 55.0%
GAATCCTTATAGCAGCGGGG+AGG + chr5_3:34725830-34725849 Msa0809050:CDS 55.0%
TAAGCCTCCCCGCTGCTATA+AGG - chr5_3:34725837-34725856 None:intergenic 55.0%
CCTTCAGGCGCGACTTACGA+GGG + chr5_3:34722527-34722546 Msa0809050:CDS 60.0%
TACCCCGCCTCATCAAACCG+CGG + chr5_3:34723423-34723442 Msa0809050:CDS 60.0%
ACTCCGCGGTTTGATGAGGC+GGG - chr5_3:34723429-34723448 None:intergenic 60.0%
!! ACTTCCGCTTTTCCCGGGAG+AGG - chr5_3:34723749-34723768 None:intergenic 60.0%
GCCAGCAAGAGCAGAACGGT+TGG + chr5_3:34725758-34725777 Msa0809050:CDS 60.0%
GCCAACCGTTCTGCTCTTGC+TGG - chr5_3:34725762-34725781 None:intergenic 60.0%
GAGCAGAACGGTTGGCAAGG+AGG + chr5_3:34725766-34725785 Msa0809050:CDS 60.0%
GCAATCACCGCCGGTGGAGA+AGG - chr5_3:34722275-34722294 None:intergenic 65.0%
TCTCCACCGGCGGTGATTGC+TGG + chr5_3:34722275-34722294 Msa0809050:CDS 65.0%
CTTCCAGCAATCACCGCCGG+TGG - chr5_3:34722281-34722300 None:intergenic 65.0%
GACACCGACGAGCTTCACGG+TGG + chr5_3:34722331-34722350 Msa0809050:CDS 65.0%
GCCTTCAGGCGCGACTTACG+AGG + chr5_3:34722526-34722545 Msa0809050:CDS 65.0%
CCCTCGTAAGTCGCGCCTGA+AGG - chr5_3:34722530-34722549 None:intergenic 65.0%
CTCCGCGGTTTGATGAGGCG+GGG - chr5_3:34723428-34723447 None:intergenic 65.0%
TCCGGCGAGATTCGTGCCGG+CGG - chr5_3:34722121-34722140 None:intergenic 70.0%
! CGAGATTCGTGCCGGCGGCG+AGG - chr5_3:34722116-34722135 None:intergenic 75.0%
GCCGCCGGCACGAATCTCGC+CGG + chr5_3:34722117-34722136 Msa0809050:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 34722002 34726624 34722002 ID=Msa0809050;Name=Msa0809050
chr5_3 mRNA 34722002 34726624 34722002 ID=Msa0809050-mRNA-1;Parent=Msa0809050;Name=Msa0809050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=183|1|1|1|1|1|8|587|733
chr5_3 exon 34722002 34723215 34722002 ID=Msa0809050-mRNA-1:exon:11018;Parent=Msa0809050-mRNA-1
chr5_3 exon 34723318 34723482 34723318 ID=Msa0809050-mRNA-1:exon:11019;Parent=Msa0809050-mRNA-1
chr5_3 exon 34723666 34723831 34723666 ID=Msa0809050-mRNA-1:exon:11020;Parent=Msa0809050-mRNA-1
chr5_3 exon 34724172 34724282 34724172 ID=Msa0809050-mRNA-1:exon:11021;Parent=Msa0809050-mRNA-1
chr5_3 exon 34724374 34724567 34724374 ID=Msa0809050-mRNA-1:exon:11022;Parent=Msa0809050-mRNA-1
chr5_3 exon 34724674 34724804 34724674 ID=Msa0809050-mRNA-1:exon:11023;Parent=Msa0809050-mRNA-1
chr5_3 exon 34724889 34724982 34724889 ID=Msa0809050-mRNA-1:exon:11024;Parent=Msa0809050-mRNA-1
chr5_3 exon 34725728 34726624 34725728 ID=Msa0809050-mRNA-1:exon:11025;Parent=Msa0809050-mRNA-1
chr5_3 five_prime_UTR 34722002 34722184 34722002 ID=Msa0809050-mRNA-1:five_prime_utr;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34722185 34723215 34722185 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34723318 34723482 34723318 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34723666 34723831 34723666 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34724172 34724282 34724172 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34724374 34724567 34724374 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34724674 34724804 34724674 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34724889 34724982 34724889 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 CDS 34725728 34726037 34725728 ID=Msa0809050-mRNA-1:cds;Parent=Msa0809050-mRNA-1
chr5_3 three_prime_UTR 34726038 34726624 34726038 ID=Msa0809050-mRNA-1:three_prime_utr;Parent=Msa0809050-mRNA-1
Gene Sequence

>Msa0809050

ATGAGTGATACAGTGGTGAACGATGAAGTTGTTGATGTTGTTAGTTCAACGAAGAGCAACATTCCTGAGCCGGAGAAGGAAAACAAACCTTCTCCACCGGCGGTGATTGCTGGAAGAAGCCGTTCACAAGGAGGTGGTAGACGAGTGACACCGACGAGCTTCACGGTGGTTTCCGATGGTAGATCCGTTGTTGAGAGAGTACTTCCGAACGGAGATTTCTACGCCGGAAGTTTCTCCGGCAACGTACCGAATGGATCCGGGAAGTATCTATGGACCGACGGTTGCATGTACGAAGGTGAATGGAAACGAGGAAAAGCTTCAGGGAAAGGGAAATTTTCATGGCCTTCAGGCGCGACTTACGAGGGAGAGTTCAAGTCGGGTCGAATGGAAGGATTCGGAACATTCGTTGGATCCGACGGTGATACATATCGCGGGTCATGGAGCTCCGATAGAAAACACGGGTTCGGTCAGAAACGTTACGCGAACGGTGATTTATACGAAGGGTGGTGGAAGCGTAACGTTCAAGACGGTCAAGGACGTTACGTTTGGAAGAATGGGAATGAGTATGTTGGTGAATGGCGTAACGGCGTTATATCTGGGAAGGGTTCGTTAGTTTGGGTTAACGGAAACCGTTTGGAGGGTTTGTGGGAGAATGGTGTTCCGAAAGGACAAGGTGTTATGAAGATTCAACATGGTTTTGGTGGGTTTGTTTGGAATGACAATTTTGCCCCTGTGTTGATGAGGAAACGTTCTTCTGTTGATACTACTGTTAGTGGTAGAGGGAGTTTGAATGAGAAGAATTTTCCTAGGATTTGTATTTGGGAATCTGAAGGTGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTTGAAGCCTCGATGTTTTATCGCGATGGAACGTGTTCTGATCCTGATGAGTTTCGAAAGCATCCTTGTTGTTTCTCTTCTGAGGTTAAGAGACCTGGTCAAACTATTTCTAAAGGGCATAAGAATTATGATTTGATGCTTAATTTGCAATTGGGGATTAGATACACGGTTGGGAAGGAAGCATCGAAGTTGCGAGAGCTTAAACCTAGTGATTTTGATCCTAAGGAGAAGTTCTGGACAAGGTTTCCGAGTGAAGGATCCAAGATTACCCCGCCTCATCAAACCGCGGAGTTTCGATGGAAAGATTACTGTCCGGTTGTTTTTAGACATTTGAGGAAGCTGTTTCAGGTTGATCCTGCTGATTATATGTTGGCTATATGTGGGGATGATGCTCTTAGAGAACTTTCCTCTCCCGGGAAAAGCGGAAGTGTTTTCTACTTGACCCAAGATGACAGATTCATGATTAAGACAGTGAAGAAATCTGAAGTCAAGGTGCTTCTTCGGATGCTTCGAAGCTATTACAAACACGTGTCCAAATATGAGAATTCACTGGTGACAAAATTCTTTGGGGTACATTGTGTGAAACCTATTGGAGGCCAAAAGATCCGGTTTATTGTGATGGGCAATCTTTTCTGCTCTGAATATCCAATTCATAGACGATTTGATTTGAAAGGATCTTCACATGGTCGTGCAACAGATAAACCTGAGGATGAGATTGATGAAACAACCACCCTCAAAGACCTTGATCTGAACTATGTGTTTCGTGTACAACGAAATTGGTACCAGGATCTTATTAAACAAATTGAGCGGGATTGTGAGTTCTTGGAAAACGAGAAAATTATGGACTACAGTCTTTTGGTTGGCCTTCATTTTCGTGATGACAACACTTATGACAAAATGGGGTTGTCACCTTTTCTTCTACGCACTGGCAATCAGGATTCTTATCATACTGAGAAGTTCATGCGTGGTTATCGCTTTCTCGAAGCAGAGTTGCAAGATAGGGATCGAGTTAAATCTGGAAGAAAATCATTAATCAGGCTAGGAGCCAATATGCCAGCAAGAGCAGAACGGTTGGCAAGGAGGAGTGATTTTGATCAATACACCAATGGTGGAATCAGCCATTTGAATCCTTATAGCAGCGGGGAGGCTTATGATTGCGTTCTATATTTTGGGGTTATCGATATTTTACAGGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAGTCTTTGCAAGTTGACTCTACTTCAATTTCTGCTGTTGATCCAAAGCTATACTCAAAAAGGTTTCGAGATTTTGTTGGAAGAATATTCATTGAAGATTGGTAA
Protein sequence

>Msa0809050

MSDTVVNDEVVDVVSSTKSNIPEPEKENKPSPPAVIAGRSRSQGGGRRVTPTSFTVVSDGRSVVERVLPNGDFYAGSFSGNVPNGSGKYLWTDGCMYEGEWKRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFVGSDGDTYRGSWSSDRKHGFGQKRYANGDLYEGWWKRNVQDGQGRYVWKNGNEYVGEWRNGVISGKGSLVWVNGNRLEGLWENGVPKGQGVMKIQHGFGGFVWNDNFAPVLMRKRSSVDTTVSGRGSLNEKNFPRICIWESEGEAGDITCDIVDNVEASMFYRDGTCSDPDEFRKHPCCFSSEVKRPGQTISKGHKNYDLMLNLQLGIRYTVGKEASKLRELKPSDFDPKEKFWTRFPSEGSKITPPHQTAEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSVFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYKHVSKYENSLVTKFFGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRATDKPEDEIDETTTLKDLDLNYVFRVQRNWYQDLIKQIERDCEFLENEKIMDYSLLVGLHFRDDNTYDKMGLSPFLLRTGNQDSYHTEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERLARRSDFDQYTNGGISHLNPYSSGEAYDCVLYFGVIDILQDYDISKKLEHAYKSLQVDSTSISAVDPKLYSKRFRDFVGRIFIEDW*