AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0771090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771090 MtrunA17_Chr5g0424301 99.045 733 7 0 1 733 1 733 0.0 1507
Msa0771090 MtrunA17_Chr3g0115111 75.172 725 144 8 32 732 19 731 0.0 1095
Msa0771090 MtrunA17_Chr3g0131001 66.962 678 192 7 64 732 50 704 0.0 882
Msa0771090 MtrunA17_Chr8g0385201 62.123 697 207 8 51 732 12 666 0.0 867
Msa0771090 MtrunA17_Chr8g0353121 50.533 750 304 12 37 732 14 750 0.0 676
Msa0771090 MtrunA17_Chr1g0171491 48.947 760 275 14 64 732 56 793 0.0 655
Msa0771090 MtrunA17_Chr1g0180261 42.356 798 308 15 60 729 42 815 0.0 585
Msa0771090 MtrunA17_Chr8g0380791 40.078 766 342 17 65 727 9 760 0.0 535
Msa0771090 MtrunA17_Chr3g0082501 63.070 417 136 7 320 732 358 760 9.06e-168 501
Msa0771090 MtrunA17_Chr3g0082501 58.580 169 70 0 64 232 59 227 1.73e-63 226
Msa0771090 MtrunA17_Chr3g0082501 32.258 124 84 0 70 193 134 257 3.24e-15 79.7
Msa0771090 MtrunA17_Chr3g0082501 44.318 88 49 0 69 156 156 243 6.78e-14 75.5
Msa0771090 MtrunA17_Chr7g0256301 58.118 425 155 7 311 732 387 791 2.24e-162 488
Msa0771090 MtrunA17_Chr7g0256301 60.714 168 66 0 65 232 67 234 6.35e-66 233
Msa0771090 MtrunA17_Chr7g0256301 45.570 79 43 0 70 148 164 242 3.60e-12 70.1
Msa0771090 MtrunA17_Chr7g0256301 35.354 99 64 0 70 168 141 239 1.06e-11 68.6
Msa0771090 MtrunA17_Chr7g0256301 34.343 99 56 1 136 234 69 158 2.61e-11 67.4
Msa0771090 MtrunA17_Chr8g0377671 39.205 176 107 0 57 232 8 183 3.32e-34 132
Msa0771090 MtrunA17_Chr8g0377671 34.591 159 104 0 69 227 112 270 8.37e-24 102
Msa0771090 MtrunA17_Chr8g0377671 37.681 138 86 0 68 205 134 271 1.32e-21 95.9
Msa0771090 MtrunA17_Chr4g0059911 37.288 177 108 1 56 232 46 219 1.85e-31 126
Msa0771090 MtrunA17_Chr4g0059911 30.000 200 133 3 59 253 94 291 1.36e-19 91.7
Msa0771090 MtrunA17_Chr4g0059911 27.200 250 150 5 94 318 11 253 3.24e-18 87.4
Msa0771090 MtrunA17_Chr8g0377191 36.842 171 108 0 62 232 5 175 3.74e-31 121
Msa0771090 MtrunA17_Chr8g0377211 39.216 153 92 1 53 205 4 155 4.29e-30 117
Msa0771090 MtrunA17_Chr8g0382971 37.500 168 105 0 65 232 21 188 4.37e-30 122
Msa0771090 MtrunA17_Chr8g0382971 34.940 166 108 0 67 232 69 234 8.79e-25 106
Msa0771090 MtrunA17_Chr8g0382971 34.286 175 111 2 59 231 109 281 2.68e-22 99.4
Msa0771090 MtrunA17_Chr2g0316611 35.678 199 102 2 49 224 19 214 9.08e-27 112
Msa0771090 MtrunA17_Chr2g0316611 35.714 182 94 1 67 225 172 353 2.31e-24 105
Msa0771090 MtrunA17_Chr2g0316611 41.935 124 72 0 69 192 243 366 3.73e-22 99.4
Msa0771090 MtrunA17_Chr2g0316611 30.526 190 118 1 65 240 147 336 6.24e-19 89.4
Msa0771090 MtrunA17_Chr2g0316611 31.915 141 96 0 92 232 36 176 2.12e-16 81.6
Msa0771090 MtrunA17_Chr2g0316631 30.645 248 120 3 49 250 19 260 2.92e-26 109
Msa0771090 MtrunA17_Chr2g0316631 32.258 217 115 3 41 227 72 286 5.68e-25 106
Msa0771090 MtrunA17_Chr2g0316631 32.432 148 100 0 67 214 149 296 2.82e-18 86.3
Msa0771090 MtrunA17_Chr2g0316631 50.000 58 29 0 67 124 241 298 2.58e-11 65.5
Msa0771090 MtrunA17_Chr5g0424111 38.650 163 100 0 70 232 198 360 8.13e-26 111
Msa0771090 MtrunA17_Chr5g0424111 38.889 126 77 0 71 196 245 370 1.20e-18 89.4
Msa0771090 MtrunA17_Chr6g0467061 32.143 224 121 3 69 268 88 304 2.04e-25 108
Msa0771090 MtrunA17_Chr6g0467061 35.135 185 97 1 66 227 16 200 2.92e-25 107
Msa0771090 MtrunA17_Chr6g0467061 30.986 213 119 2 40 224 123 335 2.04e-20 93.2
Msa0771090 MtrunA17_Chr6g0467061 31.325 166 114 0 67 232 63 228 2.78e-17 84.0
Msa0771090 MtrunA17_Chr7g0233351 35.928 167 107 0 66 232 189 355 2.56e-25 110
Msa0771090 MtrunA17_Chr7g0233351 40.625 128 76 0 71 198 240 367 3.56e-22 100
Msa0771090 MtrunA17_Chr7g0233351 36.449 107 68 0 70 176 262 368 1.48e-14 76.6
Msa0771090 MtrunA17_Chr3g0114791 33.684 190 124 1 45 232 159 348 3.66e-25 108
Msa0771090 MtrunA17_Chr4g0055371 35.928 167 107 0 66 232 169 335 4.72e-24 105
Msa0771090 MtrunA17_Chr4g0055371 36.719 128 81 0 71 198 220 347 2.15e-18 88.6
Msa0771090 MtrunA17_Chr4g0055371 33.019 106 71 0 71 176 243 348 1.65e-11 67.0
Msa0771090 MtrunA17_Chr8g0336161 34.444 180 115 1 56 232 181 360 2.14e-23 103
Msa0771090 MtrunA17_Chr8g0336161 39.844 128 77 0 71 198 245 372 6.39e-21 96.7
Msa0771090 MtrunA17_Chr8g0336161 35.849 106 68 0 71 176 268 373 1.03e-14 77.4
Msa0771090 MtrunA17_Chr5g0398011 41.379 116 68 0 68 183 34 149 1.54e-21 91.7
Msa0771090 MtrunA17_Chr5g0398011 31.579 114 78 0 93 206 36 149 7.45e-14 69.7
Msa0771090 MtrunA17_Chr8g0385241 33.831 201 100 4 65 232 6 206 1.28e-20 95.5
Msa0771090 MtrunA17_Chr8g0385241 30.500 200 105 2 67 232 54 253 4.49e-18 87.4
Msa0771090 MtrunA17_Chr8g0385241 29.545 176 113 2 68 232 124 299 1.20e-16 83.2
Msa0771090 MtrunA17_Chr8g0385241 36.301 146 92 1 90 234 8 153 5.83e-16 80.9
Msa0771090 MtrunA17_Chr8g0385241 31.293 147 100 1 71 216 183 329 9.37e-14 74.3
Msa0771090 MtrunA17_Chr8g0385241 30.137 146 100 1 38 183 199 342 2.71e-11 66.2
Msa0771090 MtrunA17_Chr5g0398021 40.000 100 60 0 69 168 13 112 4.44e-19 84.7
Msa0771090 MtrunA17_Chr5g0398021 32.673 101 68 0 92 192 13 113 3.86e-11 62.0
Msa0771090 MtrunA17_Chr5g0398021 33.673 98 65 0 117 214 15 112 5.46e-11 61.6
Msa0771090 MtrunA17_Chr8g0383331 31.973 147 100 0 69 215 4 150 1.28e-18 84.0
Msa0771090 MtrunA17_Chr8g0383331 36.667 120 76 0 91 210 3 122 3.24e-17 79.7
Msa0771090 MtrunA17_Chr8g0383331 32.231 121 82 0 112 232 1 121 1.89e-16 77.4
Msa0771090 MtrunA17_Chr8g0377221 35.616 146 79 2 66 196 71 216 3.24e-17 82.8
Msa0771090 MtrunA17_Chr8g0377221 29.744 195 99 2 67 223 3 197 8.76e-17 81.3
Msa0771090 MtrunA17_Chr8g0383551 27.706 231 115 7 53 232 10 239 1.65e-16 82.0
Msa0771090 MtrunA17_Chr8g0383551 26.415 159 82 3 91 214 109 267 4.54e-11 65.5
Msa0771090 MtrunA17_Chr1g0210831 29.381 194 105 4 28 220 579 741 1.65e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0771090 AT1G21980.1 74.722 720 148 8 31 732 48 751 0.0 1080
Msa0771090 AT1G77740.2 74.895 713 148 7 39 732 53 753 0.0 1074
Msa0771090 AT1G77740.1 74.895 713 148 7 39 732 53 753 0.0 1074
Msa0771090 AT2G26420.2 59.860 715 234 12 47 732 28 718 0.0 835
Msa0771090 AT2G26420.3 59.860 715 234 12 47 732 28 718 0.0 835
Msa0771090 AT2G26420.1 59.384 714 225 11 47 732 28 704 0.0 829
Msa0771090 AT3G07960.1 54.282 724 245 15 64 732 22 714 0.0 740
Msa0771090 AT2G41210.1 52.486 724 272 13 64 732 65 771 0.0 730
Msa0771090 AT3G56960.2 52.545 727 272 14 64 732 67 778 0.0 726
Msa0771090 AT3G56960.1 52.545 727 272 14 64 732 67 778 0.0 726
Msa0771090 AT3G07960.3 55.401 574 189 10 64 583 22 582 0.0 620
Msa0771090 AT3G07960.2 55.401 574 189 10 64 583 22 582 0.0 619
Msa0771090 AT3G07960.2 32.432 148 95 1 39 181 61 208 1.76e-16 84.0
Msa0771090 AT3G07960.4 55.401 574 189 10 64 583 22 582 0.0 619
Msa0771090 AT3G07960.4 32.432 148 95 1 39 181 61 208 1.76e-16 84.0
Msa0771090 AT3G09920.3 41.816 782 327 17 63 732 47 812 0.0 578
Msa0771090 AT3G09920.4 41.816 782 327 17 63 732 47 812 0.0 578
Msa0771090 AT3G09920.2 41.816 782 327 17 63 732 47 812 0.0 578
Msa0771090 AT3G09920.1 41.816 782 327 17 63 732 47 812 0.0 578
Msa0771090 AT1G10900.2 41.821 758 340 16 65 732 7 753 0.0 543
Msa0771090 AT1G10900.1 41.821 758 340 16 65 732 7 753 0.0 543
Msa0771090 AT1G10900.3 41.821 758 340 16 65 732 7 753 0.0 543
Msa0771090 AT1G60890.1 40.722 776 338 18 64 731 6 767 4.89e-180 533
Msa0771090 AT1G60890.2 40.722 776 338 18 64 731 18 779 5.81e-180 533
Msa0771090 AT1G01460.1 38.061 423 213 8 355 732 4 422 1.56e-81 266
Msa0771090 AT4G01190.1 38.346 399 188 6 371 730 12 391 6.83e-79 258
Msa0771090 AT4G01190.3 38.346 399 188 6 371 730 22 401 8.47e-79 258
Msa0771090 AT4G01190.2 38.346 399 188 6 371 730 22 401 8.47e-79 258
Msa0771090 AT1G77660.1 37.126 167 105 0 66 232 175 341 9.19e-27 114
Msa0771090 AT1G77660.1 36.508 126 80 0 71 196 226 351 1.19e-16 83.6
Msa0771090 AT1G21920.2 37.423 163 102 0 70 232 175 337 4.88e-25 108
Msa0771090 AT1G21920.2 38.281 128 79 0 71 198 222 349 4.16e-18 87.4
Msa0771090 AT1G21920.1 37.423 163 102 0 70 232 175 337 7.38e-25 108
Msa0771090 AT1G21920.1 38.281 128 79 0 71 198 222 349 5.33e-18 87.4
Msa0771090 AT2G35170.1 35.404 161 104 0 72 232 229 389 4.08e-23 103
Msa0771090 AT2G35170.1 37.984 129 80 0 71 199 274 402 1.06e-21 99.8
Msa0771090 AT4G17080.1 34.969 163 106 0 70 232 258 420 1.63e-22 102
Msa0771090 AT4G17080.1 37.209 129 81 0 71 199 305 433 4.63e-21 97.8
Msa0771090 AT4G17080.1 32.867 143 94 1 90 232 234 374 6.13e-13 72.4
Msa0771090 AT1G34260.4 34.158 202 103 10 398 579 952 1143 1.83e-14 78.2
Msa0771090 AT1G34260.2 34.158 202 103 10 398 579 1192 1383 1.87e-14 78.2
Msa0771090 AT1G34260.1 34.158 202 103 10 398 579 1192 1383 1.87e-14 78.2
Msa0771090 AT1G34260.3 34.158 202 103 10 398 579 1192 1383 1.87e-14 78.2
Msa0771090 AT1G75010.1 30.469 128 87 2 94 220 604 730 1.44e-12 71.6

Find 231 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGCGTTCTATATTT+TGG 0.084583 5_2:+43186345 Msa0771090:CDS
CACCAGTGAATTCTCATATT+TGG 0.134783 5_2:-43184698 None:intergenic
TGGCGTAACGGCGTTATATC+TGG 0.180746 5_2:+43183242 Msa0771090:CDS
TGATAACACTTATGACAAAA+TGG 0.240906 5_2:+43185240 Msa0771090:CDS
ACATTTGAGGAAGCTGTTTC+AGG 0.245765 5_2:+43184153 Msa0771090:CDS
CTGGGAAGGGTTCGTTAGTT+TGG 0.245826 5_2:+43183261 Msa0771090:CDS
CACTGGTGACAAAATTCTTT+GGG 0.252892 5_2:+43184713 Msa0771090:CDS
TTAATTTGCAATTGGGGATT+AGG 0.273921 5_2:+43183675 Msa0771090:CDS
GCCAACCGTTCTGCTCTTGC+TGG 0.278983 5_2:-43186249 None:intergenic
ATCCAAAGCTATACTCAAAA+AGG 0.280883 5_2:+43186463 Msa0771090:CDS
TCTCCACCGGCGGTGATTGC+TGG 0.283531 5_2:+43182756 Msa0771090:CDS
CTTGGAAAACGAGAAAATTA+TGG 0.284377 5_2:+43185183 Msa0771090:CDS
TGTTTCGTGTACAACGAAAT+TGG 0.287459 5_2:+43185014 Msa0771090:CDS
TGAGCGGGATTGTGAGTTCT+TGG 0.304803 5_2:+43185165 Msa0771090:CDS
AAATCAAATCGTCTATGAAT+TGG 0.308050 5_2:-43184902 None:intergenic
TCACTGGTGACAAAATTCTT+TGG 0.313285 5_2:+43184712 Msa0771090:CDS
TTTGTGATCATCATGATTCA+TGG 0.316766 5_2:-43186586 None:intergenic
CCATCATATTCATATCCTAT+TGG 0.327679 5_2:-43186876 None:intergenic
TCTTCAGAAAATCATTAATC+AGG 0.329444 5_2:+43186211 Msa0771090:intron
TTCATAACACCTTGTCCTTT+CGG 0.334631 5_2:-43183326 None:intergenic
AATTATGGACTACAGTCTTT+TGG 0.340214 5_2:+43185198 Msa0771090:CDS
TTCTGCTCTTGCTGGCATAT+TGG 0.341644 5_2:-43186241 None:intergenic
TAAGCCTCCCCGCTGCTATA+AGG 0.344398 5_2:-43186324 None:intergenic
ATGAAGATTCAACATGGTTT+TGG 0.351168 5_2:+43183344 Msa0771090:CDS
TCGAAGCAGAGTTGCAAGAT+AGG 0.359055 5_2:+43185425 Msa0771090:CDS
TGGGAAGGGTTCGTTAGTTT+GGG 0.361513 5_2:+43183262 Msa0771090:CDS
TGGAAACGTGGAAAAGCTTC+GGG 0.366287 5_2:+43182966 Msa0771090:CDS
TTGATCCTAAGGAGAAGTTC+TGG 0.368369 5_2:+43183858 Msa0771090:CDS
GGTTCGTTAGTTTGGGTTAA+CGG 0.369043 5_2:+43183269 Msa0771090:CDS
AATTTATTGTGGTTACCAAT+AGG 0.369864 5_2:+43186861 Msa0771090:three_prime_UTR
ATGGATCCGGGAAGTATCTA+TGG 0.372629 5_2:+43182916 Msa0771090:CDS
TTGAAACCCACTTGCAAAAG+AGG 0.384867 5_2:+43186633 Msa0771090:three_prime_UTR
GATAACACTTATGACAAAAT+GGG 0.385384 5_2:+43185241 Msa0771090:CDS
GGACGTTACGTTTGGAAGAA+TGG 0.386687 5_2:+43183200 Msa0771090:CDS
GAAGAATATTCATTGAAGAT+TGG 0.390671 5_2:+43186502 Msa0771090:CDS
TGATGATGATTTGCTGGATC+AGG 0.396012 5_2:+43186757 Msa0771090:three_prime_UTR
TTCTACGCCGGAAGTTTCTC+CGG 0.400570 5_2:+43182882 Msa0771090:CDS
TAATCATGAATCTGTCATCT+TGG 0.402081 5_2:-43184270 None:intergenic
TCTGTTGATACTACTGTTAG+TGG 0.407554 5_2:+43183419 Msa0771090:CDS
CTGATGAACAGTAAACTCTA+AGG 0.407609 5_2:-43186658 None:intergenic
GTTGATGCTTAATTTGCAAT+TGG 0.408791 5_2:+43183667 Msa0771090:CDS
ATGGTCAAGGACGTTACGTT+TGG 0.409474 5_2:+43183192 Msa0771090:CDS
CAGCCATGATGATGATTTGC+TGG 0.410729 5_2:+43186751 Msa0771090:three_prime_UTR
GTTTCATCAATCTCATCCTC+AGG 0.418360 5_2:-43184959 None:intergenic
GGATCCATTCGGTACGTTGC+CGG 0.418393 5_2:-43182901 None:intergenic
TTGATGAGGCGGGGTAATCT+TGG 0.419366 5_2:-43183903 None:intergenic
TTGGGTTAACGGAAACCGTT+TGG 0.419511 5_2:+43183280 Msa0771090:CDS
GATAGGGATCGAGTTAAATC+TGG 0.420387 5_2:+43185442 Msa0771090:CDS
GTCGGTCCATAGATACTTCC+CGG 0.423054 5_2:-43182922 None:intergenic
GGCAACGTACCGAATGGATC+CGG 0.425374 5_2:+43182903 Msa0771090:CDS
TTTGATTCTTCAGACATTTG+AGG 0.429922 5_2:+43184140 Msa0771090:intron
TTGGAGGGTTTGTGGGAGAA+TGG 0.430235 5_2:+43183299 Msa0771090:CDS
ATGTACAGTTGTTATACAAA+AGG 0.431232 5_2:+43186985 Msa0771090:three_prime_UTR
TACGTTGCCGGAGAAACTTC+CGG 0.431856 5_2:-43182889 None:intergenic
TTGATGCTTAATTTGCAATT+GGG 0.435208 5_2:+43183668 Msa0771090:CDS
CTTGTCCAGAACTTCTCCTT+AGG 0.442703 5_2:-43183863 None:intergenic
AACTCAAGTGAGATTCTTTG+AGG 0.444966 5_2:-43186697 None:intergenic
GACGTTACGTTTGGAAGAAT+GGG 0.445546 5_2:+43183201 Msa0771090:CDS
ATGGAAACGTGGAAAAGCTT+CGG 0.449727 5_2:+43182965 Msa0771090:CDS
CTGGTCAAACTATTTCTAAA+GGG 0.449919 5_2:+43183630 Msa0771090:CDS
CTTAGAGAACTTTCCTCTCC+CGG 0.455504 5_2:+43184220 Msa0771090:CDS
CATAGACGATTTGATTTGAA+AGG 0.457560 5_2:+43184908 Msa0771090:CDS
GGGACTTATTTAATTTATTG+TGG 0.462660 5_2:+43186850 Msa0771090:three_prime_UTR
AATATAGGAAGAGGGGTGAA+TGG 0.462824 5_2:+43186903 Msa0771090:three_prime_UTR
GTTCAGATCAAGGTCTTTGA+GGG 0.462840 5_2:-43184987 None:intergenic
TCCTTGTTGTTTCTCTTCTG+AGG 0.466238 5_2:+43183598 Msa0771090:CDS
CAAATGGCTGATTCCACCAT+TGG 0.468458 5_2:-43186298 None:intergenic
TCCGATAGAAAACACGGGTT+CGG 0.471872 5_2:+43183110 Msa0771090:CDS
AATCATGAATCTGTCATCTT+GGG 0.472481 5_2:-43184269 None:intergenic
GTACATTGTGTGAAACCTAT+TGG 0.473664 5_2:+43184736 Msa0771090:CDS
CCTGGTCAAACTATTTCTAA+AGG 0.477641 5_2:+43183629 Msa0771090:CDS
TCAGATCCGGTTTATTGTGA+TGG 0.478024 5_2:+43184856 Msa0771090:intron
GAAACCGTTTGGAGGGTTTG+TGG 0.478922 5_2:+43183291 Msa0771090:CDS
CCAATAGGATATGAATATGA+TGG 0.479090 5_2:+43186876 Msa0771090:three_prime_UTR
GAAGAGCAACATTCCTGAAC+CGG 0.481606 5_2:+43182716 Msa0771090:CDS
CCCTCGTAAGTCGCGCCTGA+AGG 0.482364 5_2:-43183008 None:intergenic
GGCGTAACGGCGTTATATCT+GGG 0.483135 5_2:+43183243 Msa0771090:CDS
GATTGCCCATCACAATAAAC+CGG 0.485074 5_2:-43184862 None:intergenic
AAACCGTTTGGAGGGTTTGT+GGG 0.486108 5_2:+43183292 Msa0771090:CDS
ATTTGAATCCTTATAGCAGC+GGG 0.489048 5_2:+43186316 Msa0771090:CDS
GTGGAAAAGCTTCGGGGAAA+GGG 0.490458 5_2:+43182973 Msa0771090:CDS
ATACCAGTGCGTAGAAGAAA+AGG 0.493562 5_2:-43185271 None:intergenic
TCGGGTCGAATGGAAGGATT+CGG 0.497771 5_2:+43183041 Msa0771090:CDS
GATACTACTGTTAGTGGTAG+AGG 0.499269 5_2:+43183425 Msa0771090:CDS
GATTATATGTTGGCTATATG+TGG 0.502251 5_2:+43184187 Msa0771090:CDS
AACTCCGTGGTTTGATGAGG+CGG 0.502745 5_2:-43183914 None:intergenic
TGTACAGTTGTTATACAAAA+GGG 0.507801 5_2:+43186986 Msa0771090:three_prime_UTR
AGTTCAGATCAAGGTCTTTG+AGG 0.508946 5_2:-43184988 None:intergenic
GATTCCCAAATACAAATCCT+AGG 0.509645 5_2:-43183470 None:intergenic
CAGATCCGGTTTATTGTGAT+GGG 0.510029 5_2:+43184857 Msa0771090:intron
GTTGCATGTACGAAGGTGAA+TGG 0.510431 5_2:+43182946 Msa0771090:CDS
GTGATACATATCGCGGGTCG+TGG 0.513239 5_2:+43183084 Msa0771090:CDS
CGTGGAAAAGCTTCGGGGAA+AGG 0.513650 5_2:+43182972 Msa0771090:CDS
CGCTGCTATAAGGATTCAAA+TGG 0.515820 5_2:-43186314 None:intergenic
TAATTATTATATTATTCTTG+AGG 0.517028 5_2:+43187033 Msa0771090:three_prime_UTR
GAAACCTATTGGAGGCCAAA+AGG 0.519281 5_2:+43184747 Msa0771090:CDS
GAAGGATTCGGAACATTCGT+TGG 0.521458 5_2:+43183053 Msa0771090:CDS
TCTTCTGAGGTTAAGAGACC+TGG 0.521675 5_2:+43183611 Msa0771090:CDS
GCAATCACCGCCGGTGGAGA+AGG 0.522071 5_2:-43182753 None:intergenic
AAACTTACTTAATAAGATCC+TGG 0.522332 5_2:-43185039 None:intergenic
ACTCCGTGGTTTGATGAGGC+GGG 0.523115 5_2:-43183913 None:intergenic
AGATACTTCCCGGATCCATT+CGG 0.526389 5_2:-43182912 None:intergenic
GTTCATCAGATCATTGTAAG+TGG 0.526708 5_2:+43186672 Msa0771090:three_prime_UTR
TTAGAGAACTTTCCTCTCCC+GGG 0.528049 5_2:+43184221 Msa0771090:CDS
CGAAGCAGAGTTGCAAGATA+GGG 0.528077 5_2:+43185426 Msa0771090:CDS
GTGATTTATACGAAGGGTGG+TGG 0.528555 5_2:+43183153 Msa0771090:CDS
CAACATTCCTGAACCGGAGA+AGG 0.528680 5_2:+43182722 Msa0771090:CDS
AGAGTTCAAGTCGGGTCGAA+TGG 0.530606 5_2:+43183031 Msa0771090:CDS
CCTTTAGAAATAGTTTGACC+AGG 0.531392 5_2:-43183629 None:intergenic
CAAGAGCAGAACGGTTGGCA+AGG 0.532403 5_2:+43186253 Msa0771090:CDS
ATCAAACCACGGAGTTTCGA+TGG 0.537995 5_2:+43183921 Msa0771090:CDS
TACGAGGGAGAGTTCAAGTC+GGG 0.538370 5_2:+43183023 Msa0771090:CDS
TGATGCTTAATTTGCAATTG+GGG 0.539661 5_2:+43183669 Msa0771090:CDS
TTCAAGTCGGGTCGAATGGA+AGG 0.541704 5_2:+43183035 Msa0771090:CDS
GGAACATTCGTTGGATCCGA+CGG 0.543679 5_2:+43183062 Msa0771090:CDS
TCAAAGAATCTCACTTGAGT+TGG 0.544059 5_2:+43186699 Msa0771090:three_prime_UTR
TGGACAAGGTTTCCGAGTGA+AGG 0.546695 5_2:+43183878 Msa0771090:CDS
CAGATCAAGGTCTTTGAGGG+TGG 0.547100 5_2:-43184984 None:intergenic
CTTTCCTCTCCCGGGAAAAG+CGG 0.547869 5_2:+43184229 Msa0771090:CDS
TTCATCAGATCATTGTAAGT+GGG 0.548939 5_2:+43186673 Msa0771090:three_prime_UTR
AGCTTCACGGTGGTTTCCGA+TGG 0.550449 5_2:+43182822 Msa0771090:CDS
ATTATATGTTGGCTATATGT+GGG 0.552492 5_2:+43184188 Msa0771090:CDS
TGTTATCATCACGAAAATGA+AGG 0.554160 5_2:-43185225 None:intergenic
GCAACGTACCGAATGGATCC+GGG 0.560372 5_2:+43182904 Msa0771090:CDS
TCTCCCACAAACCCTCCAAA+CGG 0.561965 5_2:-43183295 None:intergenic
TTGTTATACAAAAGGGTGGA+TGG 0.562749 5_2:+43186993 Msa0771090:three_prime_UTR
ATTTGTATTTGGGAATCTGA+AGG 0.563741 5_2:+43183476 Msa0771090:CDS
GTCTACCACCTCCTTGTGAA+CGG 0.563775 5_2:-43182785 None:intergenic
TTATGTGTAGATACACGGTT+GGG 0.565022 5_2:+43183795 Msa0771090:intron
TTTGATCAATACACCAATGG+TGG 0.566117 5_2:+43186285 Msa0771090:CDS
TGGGAATCTGAAGGTGAAGC+TGG 0.566561 5_2:+43183485 Msa0771090:CDS
AGAAAGCAAATAAAGAGAAG+AGG 0.567172 5_2:-43182500 None:intergenic
ATAGCCAACATATAATCAGC+AGG 0.569375 5_2:-43184181 None:intergenic
GAAACACATAGTTCAGATCA+AGG 0.569553 5_2:-43184997 None:intergenic
CTAAGGAGAAGTTCTGGACA+AGG 0.572481 5_2:+43183864 Msa0771090:CDS
TCCTTAGGATCAAAATCACT+AGG 0.573231 5_2:-43183848 None:intergenic
TGAAACCCACTTGCAAAAGA+GGG 0.573637 5_2:+43186634 Msa0771090:three_prime_UTR
GATAAAATATCTTCTCCTGA+AGG 0.573939 5_2:+43186554 Msa0771090:three_prime_UTR
CTCCGTGGTTTGATGAGGCG+GGG 0.574159 5_2:-43183912 None:intergenic
GCCGCCGGCACGAATCTCGC+CGG 0.575511 5_2:+43182596 Msa0771090:five_prime_UTR
GCCAGCAAGAGCAGAACGGT+TGG 0.576008 5_2:+43186248 Msa0771090:CDS
AGTGAAGAAATCTGAAGTCA+AGG 0.576419 5_2:+43184297 Msa0771090:CDS
TTCTCCGGCAACGTACCGAA+TGG 0.579587 5_2:+43182897 Msa0771090:CDS
CGAGATTCGTGCCGGCGGCG+AGG 0.581051 5_2:-43182592 None:intergenic
GATCCAGCAAATCATCATCA+TGG 0.581426 5_2:-43186754 None:intergenic
TCGATGGAAAGATTACTGTC+CGG 0.582178 5_2:+43183937 Msa0771090:CDS
CCGGCGTAGAAATCTCCGTT+CGG 0.582234 5_2:-43182870 None:intergenic
GCCTTCAGGCGCGACTTACG+AGG 0.585744 5_2:+43183007 Msa0771090:CDS
TGGGAGAATGGTGTTCCGAA+AGG 0.586485 5_2:+43183311 Msa0771090:CDS
GGTTAACGGAAACCGTTTGG+AGG 0.586593 5_2:+43183283 Msa0771090:CDS
AGTGACACCGACGAGCTTCA+CGG 0.588056 5_2:+43182809 Msa0771090:CDS
GTGTTCCAGACAAATTGAGC+GGG 0.588866 5_2:+43185150 Msa0771090:intron
AGAAAATCATTAATCAGGCT+AGG 0.589168 5_2:+43186216 Msa0771090:intron
TAACGGCGTTATATCTGGGA+AGG 0.589873 5_2:+43183247 Msa0771090:CDS
GTTATGTGTAGATACACGGT+TGG 0.590677 5_2:+43183794 Msa0771090:intron
GTCCAAATATGAGAATTCAC+TGG 0.592833 5_2:+43184696 Msa0771090:CDS
TCCGGCGAGATTCGTGCCGG+CGG 0.593401 5_2:-43182597 None:intergenic
CTCAACAACGGATCTACCAT+CGG 0.594963 5_2:-43182838 None:intergenic
CGAAACTCCGTGGTTTGATG+AGG 0.598691 5_2:-43183917 None:intergenic
TGACCAGTTAGTACAAAATG+AGG 0.601177 5_2:+43186532 Msa0771090:three_prime_UTR
TGATCCTGCTGATTATATGT+TGG 0.603422 5_2:+43184177 Msa0771090:CDS
GGAAAACAAACCTTCTCCAC+CGG 0.604991 5_2:+43182743 Msa0771090:CDS
GATGATGATTTGCTGGATCA+GGG 0.606278 5_2:+43186758 Msa0771090:three_prime_UTR
AATGGTGTTCCGAAAGGACA+AGG 0.606673 5_2:+43183317 Msa0771090:CDS
GTTAACGGAAACCGTTTGGA+GGG 0.607741 5_2:+43183284 Msa0771090:CDS
GGAATGAGTATGTTGGTGAA+TGG 0.608130 5_2:+43183222 Msa0771090:CDS
AGAAGCCGTTCACAAGGAGG+TGG 0.608692 5_2:+43182780 Msa0771090:CDS
GTGTAGATACACGGTTGGGA+AGG 0.610224 5_2:+43183799 Msa0771090:intron
TATGTTGGTGAATGGCGTAA+CGG 0.613312 5_2:+43183230 Msa0771090:CDS
AAGAATGGGAATGAGTATGT+TGG 0.613469 5_2:+43183215 Msa0771090:CDS
ATACTACTGTTAGTGGTAGA+GGG 0.613626 5_2:+43183426 Msa0771090:CDS
GAGCAGAACGGTTGGCAAGG+AGG 0.613970 5_2:+43186256 Msa0771090:CDS
GGTCAGAAACGTTACGCGAA+CGG 0.615476 5_2:+43183131 Msa0771090:CDS
ACTGGTGACAAAATTCTTTG+GGG 0.617270 5_2:+43184714 Msa0771090:CDS
ACTGAGCATTGATTTCTCGC+CGG 0.619661 5_2:+43182626 Msa0771090:five_prime_UTR
CTTCCAGCAATCACCGCCGG+TGG 0.622524 5_2:-43182759 None:intergenic
GTAATCTTGGATCCTTCACT+CGG 0.623506 5_2:-43183890 None:intergenic
CTTCTTCCAGCAATCACCGC+CGG 0.623571 5_2:-43182762 None:intergenic
CCGAACGGAGATTTCTACGC+CGG 0.624286 5_2:+43182870 Msa0771090:CDS
ATAACACTTATGACAAAATG+GGG 0.625320 5_2:+43185242 Msa0771090:CDS
ATCTTTCCATCGAAACTCCG+TGG 0.627373 5_2:-43183927 None:intergenic
TGATATTGTTGATAATGTCG+AGG 0.629658 5_2:+43183520 Msa0771090:CDS
GCTGGAAGAAGCCGTTCACA+AGG 0.630714 5_2:+43182774 Msa0771090:CDS
TGGAAGCGTAACGTTCAAGA+TGG 0.631023 5_2:+43183173 Msa0771090:CDS
GAACGTTTCCTCATCAACAC+AGG 0.631655 5_2:-43183395 None:intergenic
GCGAACGGTGATTTATACGA+AGG 0.632599 5_2:+43183146 Msa0771090:CDS
GATTTGAAAGGATCTTCACA+TGG 0.636840 5_2:+43184920 Msa0771090:CDS
CCTTCAGGCGCGACTTACGA+GGG 0.638477 5_2:+43183008 Msa0771090:CDS
CATTTGAATCCTTATAGCAG+CGG 0.641163 5_2:+43186315 Msa0771090:CDS
CATTGTGTGAAACCTATTGG+AGG 0.647839 5_2:+43184739 Msa0771090:CDS
AACGGCGTTATATCTGGGAA+GGG 0.647935 5_2:+43183248 Msa0771090:CDS
AATGGAAAATTGTTTCCCTG+AGG 0.648195 5_2:+43186921 Msa0771090:three_prime_UTR
TCATCAGATCATTGTAAGTG+GGG 0.649045 5_2:+43186674 Msa0771090:three_prime_UTR
TCATGTTATGTGTAGATACA+CGG 0.650708 5_2:+43183790 Msa0771090:intron
AACGTTTCCTCATCAACACA+GGG 0.651828 5_2:-43183394 None:intergenic
TGGAGCTCCGATAGAAAACA+CGG 0.652318 5_2:+43183104 Msa0771090:CDS
GGTGAACGATGAAGTTGTTG+AGG 0.655019 5_2:+43182680 Msa0771090:CDS
GAAACCACCGTGAAGCTCGT+CGG 0.655705 5_2:-43182816 None:intergenic
CGTAACGTTCAAGATGGTCA+AGG 0.657499 5_2:+43183179 Msa0771090:CDS
GGGATCGAGTTAAATCTGGA+AGG 0.660315 5_2:+43185446 Msa0771090:CDS
ACGGTGATTTATACGAAGGG+TGG 0.664730 5_2:+43183150 Msa0771090:CDS
GTTGAGAGAGTACTTCCGAA+CGG 0.664758 5_2:+43182855 Msa0771090:CDS
TGTACAACGAAATTGGTACC+AGG 0.667243 5_2:+43185021 Msa0771090:CDS
CCGACGGTGATACATATCGC+GGG 0.668037 5_2:+43183078 Msa0771090:CDS
AAACAAACCTTCTCCACCGG+CGG 0.669189 5_2:+43182746 Msa0771090:CDS
GGGAAGTATCTATGGACCGA+CGG 0.669212 5_2:+43182924 Msa0771090:CDS
TTCGAAAATGAGTGATACAG+TGG 0.669503 5_2:+43182659 Msa0771090:exon
CGAACGGTGATTTATACGAA+GGG 0.671404 5_2:+43183147 Msa0771090:CDS
TGTGTTCCAGACAAATTGAG+CGG 0.672020 5_2:+43185149 Msa0771090:intron
GGAAGAAGCCGTTCACAAGG+AGG 0.676227 5_2:+43182777 Msa0771090:CDS
CATACTGAGAAGTTCATGCG+TGG 0.677957 5_2:+43185391 Msa0771090:CDS
ACAGTTGTTATACAAAAGGG+TGG 0.681373 5_2:+43186989 Msa0771090:three_prime_UTR
GAATCCTTATAGCAGCGGGG+AGG 0.683149 5_2:+43186320 Msa0771090:CDS
TCCGACGGTGATACATATCG+CGG 0.684537 5_2:+43183077 Msa0771090:CDS
TTATATGTTGGCTATATGTG+GGG 0.684561 5_2:+43184189 Msa0771090:CDS
CCCGCGATATGTATCACCGT+CGG 0.686357 5_2:-43183078 None:intergenic
ACCTCAGAAGAGAAACAACA+AGG 0.687681 5_2:-43183599 None:intergenic
ACCTTCGTACATGCAACCGT+CGG 0.692042 5_2:-43182940 None:intergenic
ATATGCCAGCAAGAGCAGAA+CGG 0.698498 5_2:+43186244 Msa0771090:CDS
GGTGTTATGAAGATTCAACA+TGG 0.703414 5_2:+43183338 Msa0771090:CDS
CGGAAGTACTCTCTCAACAA+CGG 0.711881 5_2:-43182850 None:intergenic
TACCCCGCCTCATCAAACCA+CGG 0.724086 5_2:+43183910 Msa0771090:CDS
TTACGAGGGAGAGTTCAAGT+CGG 0.724697 5_2:+43183022 Msa0771090:CDS
GGAAACGTGGAAAAGCTTCG+GGG 0.726865 5_2:+43182967 Msa0771090:CDS
TACGAAGGTGAATGGAAACG+TGG 0.729766 5_2:+43182954 Msa0771090:CDS
GGAGCTCCGATAGAAAACAC+GGG 0.730458 5_2:+43183105 Msa0771090:CDS
ACCGACGGTTGCATGTACGA+AGG 0.732846 5_2:+43182939 Msa0771090:CDS
TTTGAATCCTTATAGCAGCG+GGG 0.739961 5_2:+43186317 Msa0771090:CDS
TCGTGCAACAGATAAACCTG+AGG 0.756825 5_2:+43184943 Msa0771090:CDS
GACACCGACGAGCTTCACGG+TGG 0.776234 5_2:+43182812 Msa0771090:CDS
ACGTTTCCTCATCAACACAG+GGG 0.812629 5_2:-43183393 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATTTTTTTCTTTCT+AGG + chr5_2:43185073-43185092 Msa0771090:intron 10.0%
!!! TTTGATTTCTAATATATTTT+TGG + chr5_2:43185937-43185956 Msa0771090:intron 10.0%
!!! TTGTATTTTTTTTTTTGAAA+TGG + chr5_2:43186824-43186843 Msa0771090:three_prime_UTR 10.0%
!!! TGTATTTTTTTTTTTGAAAT+GGG + chr5_2:43186825-43186844 Msa0771090:three_prime_UTR 10.0%
!! TAATTATTATATTATTCTTG+AGG + chr5_2:43187033-43187052 Msa0771090:three_prime_UTR 10.0%
!!! ATTTTCGAATATATTTTTTC+CGG - chr5_2:43182648-43182667 None:intergenic 15.0%
!!! TTTAGGTTTAATTTATCAAA+TGG + chr5_2:43185515-43185534 Msa0771090:intron 15.0%
!! CTTAAATTCAAATTCTTTAT+TGG + chr5_2:43185770-43185789 Msa0771090:intron 15.0%
!! AACATGTATATGAAAAAAAA+TGG + chr5_2:43186783-43186802 Msa0771090:three_prime_UTR 15.0%
!! ACATGTATATGAAAAAAAAT+GGG + chr5_2:43186784-43186803 Msa0771090:three_prime_UTR 15.0%
!!! GTATTTTTTTTTTTGAAATG+GGG + chr5_2:43186826-43186845 Msa0771090:three_prime_UTR 15.0%
!! TCAATAAGAATAACAAAACA+CGG - chr5_2:43183713-43183732 None:intergenic 20.0%
!!! TTGTTTTAATGTTGATGTTT+TGG + chr5_2:43184010-43184029 Msa0771090:intron 20.0%
!!! TAAATAATCATTTTTCCACA+TGG - chr5_2:43184421-43184440 None:intergenic 20.0%
!! TTCCTTAAAATTAATGTAGA+TGG + chr5_2:43185489-43185508 Msa0771090:intron 20.0%
!!! ATCCATCTACATTAATTTTA+AGG - chr5_2:43185494-43185513 None:intergenic 20.0%
!! ATTAATGTAGATGGATATTT+AGG + chr5_2:43185498-43185517 Msa0771090:intron 20.0%
!! TTGTAATCTTGAGATATATT+AGG + chr5_2:43185644-43185663 Msa0771090:intron 20.0%
!! TGTAATCTTGAGATATATTA+GGG + chr5_2:43185645-43185664 Msa0771090:intron 20.0%
!! TAAAGAATTTGAATTTAAGC+CGG - chr5_2:43185769-43185788 None:intergenic 20.0%
!! TTCTTTATTGGCATTAAAAT+TGG + chr5_2:43185782-43185801 Msa0771090:intron 20.0%
!! AAAAATCCAGGAAAAATATT+TGG + chr5_2:43186606-43186625 Msa0771090:three_prime_UTR 20.0%
!!! GAATATGATGGAAAAAATAT+AGG + chr5_2:43186888-43186907 Msa0771090:three_prime_UTR 20.0%
!!! ATTTTTTTAATCTAACCTCA+GGG - chr5_2:43186939-43186958 None:intergenic 20.0%
!! AAGACAAAAATTTCATTACA+TGG - chr5_2:43187088-43187107 None:intergenic 20.0%
!!! TGTTACTTTTTTGAAGTGTT+TGG - chr5_2:43182547-43182566 None:intergenic 25.0%
!! ATTTTCCTAGGATTTGTATT+TGG + chr5_2:43183465-43183484 Msa0771090:CDS 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG + chr5_2:43183466-43183485 Msa0771090:CDS 25.0%
!!! TTGATGCTTAATTTGCAATT+GGG + chr5_2:43183668-43183687 Msa0771090:CDS 25.0%
! CAATAAGAATAACAAAACAC+GGG - chr5_2:43183712-43183731 None:intergenic 25.0%
!! ATTATATGTTGGCTATATGT+GGG + chr5_2:43184188-43184207 Msa0771090:CDS 25.0%
! GATATATTATTGTAGCTGTA+TGG + chr5_2:43184782-43184801 Msa0771090:intron 25.0%
! AAATCAAATCGTCTATGAAT+TGG - chr5_2:43184905-43184924 None:intergenic 25.0%
! AAACTTACTTAATAAGATCC+TGG - chr5_2:43185042-43185061 None:intergenic 25.0%
! TGATAACACTTATGACAAAA+TGG + chr5_2:43185240-43185259 Msa0771090:CDS 25.0%
! GATAACACTTATGACAAAAT+GGG + chr5_2:43185241-43185260 Msa0771090:CDS 25.0%
! ATAACACTTATGACAAAATG+GGG + chr5_2:43185242-43185261 Msa0771090:CDS 25.0%
!! GTTTAATTTATCAAATGGCT+GGG + chr5_2:43185520-43185539 Msa0771090:intron 25.0%
! AATCTCAGTAAAAATGAGAA+TGG + chr5_2:43185620-43185639 Msa0771090:intron 25.0%
! ATCTCTTGAAAATATCAGAA+AGG + chr5_2:43185717-43185736 Msa0771090:intron 25.0%
! ATTATGTTGGCAAATTAAGT+GGG + chr5_2:43185846-43185865 Msa0771090:intron 25.0%
! CAATCAATGAATTTATTGTC+AGG - chr5_2:43185963-43185982 None:intergenic 25.0%
! TCTTCAGAAAATCATTAATC+AGG + chr5_2:43186211-43186230 Msa0771090:intron 25.0%
!! TATGATTGCGTTCTATATTT+TGG + chr5_2:43186345-43186364 Msa0771090:CDS 25.0%
!! ATGATTGCGTTCTATATTTT+GGG + chr5_2:43186346-43186365 Msa0771090:CDS 25.0%
! GAAGAATATTCATTGAAGAT+TGG + chr5_2:43186502-43186521 Msa0771090:CDS 25.0%
!! AAACTTCCAAATATTTTTCC+TGG - chr5_2:43186615-43186634 None:intergenic 25.0%
!!! TTTTTTTTTTTGAAATGGGG+TGG + chr5_2:43186829-43186848 Msa0771090:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAAATGGGGT+GGG + chr5_2:43186830-43186849 Msa0771090:three_prime_UTR 25.0%
!! GGGACTTATTTAATTTATTG+TGG + chr5_2:43186850-43186869 Msa0771090:three_prime_UTR 25.0%
! AATTTATTGTGGTTACCAAT+AGG + chr5_2:43186861-43186880 Msa0771090:three_prime_UTR 25.0%
! ATGGAAAAAATATAGGAAGA+GGG + chr5_2:43186895-43186914 Msa0771090:three_prime_UTR 25.0%
!!! CATTTTTTTAATCTAACCTC+AGG - chr5_2:43186940-43186959 None:intergenic 25.0%
! GGTTAGATTAAAAAAATGCT+TGG + chr5_2:43186942-43186961 Msa0771090:three_prime_UTR 25.0%
! ATGTACAGTTGTTATACAAA+AGG + chr5_2:43186985-43187004 Msa0771090:three_prime_UTR 25.0%
! TGTACAGTTGTTATACAAAA+GGG + chr5_2:43186986-43187005 Msa0771090:three_prime_UTR 25.0%
AGAAAGCAAATAAAGAGAAG+AGG - chr5_2:43182503-43182522 None:intergenic 30.0%
! ATGAAGATTCAACATGGTTT+TGG + chr5_2:43183344-43183363 Msa0771090:CDS 30.0%
! TGAATGAGAAGAATTTTCCT+AGG + chr5_2:43183453-43183472 Msa0771090:CDS 30.0%
ATTTGTATTTGGGAATCTGA+AGG + chr5_2:43183476-43183495 Msa0771090:CDS 30.0%
!! TGATATTGTTGATAATGTCG+AGG + chr5_2:43183520-43183539 Msa0771090:CDS 30.0%
!! CTGGTCAAACTATTTCTAAA+GGG + chr5_2:43183630-43183649 Msa0771090:CDS 30.0%
!! GTTGATGCTTAATTTGCAAT+TGG + chr5_2:43183667-43183686 Msa0771090:CDS 30.0%
!! TGATGCTTAATTTGCAATTG+GGG + chr5_2:43183669-43183688 Msa0771090:CDS 30.0%
!! TTAATTTGCAATTGGGGATT+AGG + chr5_2:43183675-43183694 Msa0771090:CDS 30.0%
TCATGTTATGTGTAGATACA+CGG + chr5_2:43183790-43183809 Msa0771090:intron 30.0%
GAGTTATACCTAAAAACAAC+CGG - chr5_2:43183959-43183978 None:intergenic 30.0%
!!! TTAATGTTGATGTTTTGGTG+AGG + chr5_2:43184015-43184034 Msa0771090:intron 30.0%
GACCTGTGTTGAAATTAATT+CGG + chr5_2:43184039-43184058 Msa0771090:intron 30.0%
ACCTGTGTTGAAATTAATTC+GGG + chr5_2:43184040-43184059 Msa0771090:intron 30.0%
! TGAAATTAATTCGGGTGTTT+TGG + chr5_2:43184048-43184067 Msa0771090:intron 30.0%
!! GTTTTGGATGATTTTTGGAT+TGG + chr5_2:43184064-43184083 Msa0771090:intron 30.0%
TTTGATTCTTCAGACATTTG+AGG + chr5_2:43184140-43184159 Msa0771090:intron 30.0%
! GATTATATGTTGGCTATATG+TGG + chr5_2:43184187-43184206 Msa0771090:CDS 30.0%
! TTATATGTTGGCTATATGTG+GGG + chr5_2:43184189-43184208 Msa0771090:CDS 30.0%
AATCATGAATCTGTCATCTT+GGG - chr5_2:43184272-43184291 None:intergenic 30.0%
TAATCATGAATCTGTCATCT+TGG - chr5_2:43184273-43184292 None:intergenic 30.0%
!! GTGTCTTGTTGAATTTTACA+CGG + chr5_2:43184357-43184376 Msa0771090:intron 30.0%
!! TGTCTTGTTGAATTTTACAC+GGG + chr5_2:43184358-43184377 Msa0771090:intron 30.0%
TAAGAACAAAACATACCATG+TGG + chr5_2:43184403-43184422 Msa0771090:intron 30.0%
! ATTTCTGACTTCCAACTTTT+AGG + chr5_2:43184636-43184655 Msa0771090:intron 30.0%
TCCAATAACAATGAAAAGTC+AGG - chr5_2:43184833-43184852 None:intergenic 30.0%
TGTTATTGGAAAATCAGATC+CGG + chr5_2:43184843-43184862 Msa0771090:intron 30.0%
!! CATAGACGATTTGATTTGAA+AGG + chr5_2:43184908-43184927 Msa0771090:CDS 30.0%
CGTATTCTATAACGATTCAT+TGG - chr5_2:43185109-43185128 None:intergenic 30.0%
AATACGTATCTGACAAGTTA+TGG + chr5_2:43185123-43185142 Msa0771090:intron 30.0%
CTTGGAAAACGAGAAAATTA+TGG + chr5_2:43185183-43185202 Msa0771090:CDS 30.0%
!! AATTATGGACTACAGTCTTT+TGG + chr5_2:43185198-43185217 Msa0771090:CDS 30.0%
TGTTATCATCACGAAAATGA+AGG - chr5_2:43185228-43185247 None:intergenic 30.0%
! GGTTTAATTTATCAAATGGC+TGG + chr5_2:43185519-43185538 Msa0771090:intron 30.0%
!! AAGCTTTTCCAATTTAGCTT+TGG - chr5_2:43185564-43185583 None:intergenic 30.0%
! TAAAAGACTTCAACTGATTC+AGG - chr5_2:43185598-43185617 None:intergenic 30.0%
ATCAGAAAGGAATAAGTTGT+AGG + chr5_2:43185730-43185749 Msa0771090:intron 30.0%
! GTAAGTAGTTTGCATTATGT+TGG + chr5_2:43185833-43185852 Msa0771090:intron 30.0%
CATTATGTTGGCAAATTAAG+TGG + chr5_2:43185845-43185864 Msa0771090:intron 30.0%
TGTGTCTGTATATGGTATAT+GGG - chr5_2:43186038-43186057 None:intergenic 30.0%
TTGTGTCTGTATATGGTATA+TGG - chr5_2:43186039-43186058 None:intergenic 30.0%
GAAATTGTTGTGTCTGTATA+TGG - chr5_2:43186046-43186065 None:intergenic 30.0%
TCAACAATCTTGAACAGTTT+AGG - chr5_2:43186130-43186149 None:intergenic 30.0%
TTTCGTGACATGTATTAAGT+AGG + chr5_2:43186179-43186198 Msa0771090:intron 30.0%
AGAAAATCATTAATCAGGCT+AGG + chr5_2:43186216-43186235 Msa0771090:intron 30.0%
!! GATTTTGATCAATACACCAA+TGG + chr5_2:43186282-43186301 Msa0771090:CDS 30.0%
! TGATTGCGTTCTATATTTTG+GGG + chr5_2:43186347-43186366 Msa0771090:CDS 30.0%
ATCCAAAGCTATACTCAAAA+AGG + chr5_2:43186463-43186482 Msa0771090:CDS 30.0%
!!! AACCTTTTTGAGTATAGCTT+TGG - chr5_2:43186468-43186487 None:intergenic 30.0%
! AAAAGGTTTCGAGATTTTGT+TGG + chr5_2:43186480-43186499 Msa0771090:CDS 30.0%
! TATCCTCATTTTGTACTAAC+TGG - chr5_2:43186538-43186557 None:intergenic 30.0%
GATAAAATATCTTCTCCTGA+AGG + chr5_2:43186554-43186573 Msa0771090:three_prime_UTR 30.0%
TTTGTGATCATCATGATTCA+TGG - chr5_2:43186589-43186608 None:intergenic 30.0%
TTCATCAGATCATTGTAAGT+GGG + chr5_2:43186673-43186692 Msa0771090:three_prime_UTR 30.0%
CCATCATATTCATATCCTAT+TGG - chr5_2:43186879-43186898 None:intergenic 30.0%
CCAATAGGATATGAATATGA+TGG + chr5_2:43186876-43186895 Msa0771090:three_prime_UTR 30.0%
GATGGAAAAAATATAGGAAG+AGG + chr5_2:43186894-43186913 Msa0771090:three_prime_UTR 30.0%
TGGAAAAAATATAGGAAGAG+GGG + chr5_2:43186896-43186915 Msa0771090:three_prime_UTR 30.0%
TTCGAAAATGAGTGATACAG+TGG + chr5_2:43182659-43182678 Msa0771090:exon 35.0%
AAGAATGGGAATGAGTATGT+TGG + chr5_2:43183215-43183234 Msa0771090:CDS 35.0%
TTCATAACACCTTGTCCTTT+CGG - chr5_2:43183329-43183348 None:intergenic 35.0%
! GGTGTTATGAAGATTCAACA+TGG + chr5_2:43183338-43183357 Msa0771090:CDS 35.0%
!!! AAGATTCAACATGGTTTTGG+TGG + chr5_2:43183347-43183366 Msa0771090:CDS 35.0%
!!! AGATTCAACATGGTTTTGGT+GGG + chr5_2:43183348-43183367 Msa0771090:CDS 35.0%
TCTGTTGATACTACTGTTAG+TGG + chr5_2:43183419-43183438 Msa0771090:CDS 35.0%
ATACTACTGTTAGTGGTAGA+GGG + chr5_2:43183426-43183445 Msa0771090:CDS 35.0%
GATTCCCAAATACAAATCCT+AGG - chr5_2:43183473-43183492 None:intergenic 35.0%
! TTTTCGAAACTCATCAGGAT+CGG - chr5_2:43183576-43183595 None:intergenic 35.0%
! CCTTTAGAAATAGTTTGACC+AGG - chr5_2:43183632-43183651 None:intergenic 35.0%
!! CCTGGTCAAACTATTTCTAA+AGG + chr5_2:43183629-43183648 Msa0771090:CDS 35.0%
TTATGTGTAGATACACGGTT+GGG + chr5_2:43183795-43183814 Msa0771090:intron 35.0%
!! ACCTAGTGATTTTGATCCTA+AGG + chr5_2:43183847-43183866 Msa0771090:CDS 35.0%
TCCTTAGGATCAAAATCACT+AGG - chr5_2:43183851-43183870 None:intergenic 35.0%
!!! ATTACTGTCCGGTTGTTTTT+AGG + chr5_2:43183948-43183967 Msa0771090:CDS 35.0%
ACCCGAATTAATTTCAACAC+AGG - chr5_2:43184044-43184063 None:intergenic 35.0%
! TGATCCTGCTGATTATATGT+TGG + chr5_2:43184177-43184196 Msa0771090:CDS 35.0%
ATAGCCAACATATAATCAGC+AGG - chr5_2:43184184-43184203 None:intergenic 35.0%
! AGTGAAGAAATCTGAAGTCA+AGG + chr5_2:43184297-43184316 Msa0771090:CDS 35.0%
! TGTTGAATTTTACACGGGTT+TGG + chr5_2:43184363-43184382 Msa0771090:intron 35.0%
! GTTGAATTTTACACGGGTTT+GGG + chr5_2:43184364-43184383 Msa0771090:intron 35.0%
CTTACAAAACCTAAGTTGTC+TGG - chr5_2:43184494-43184513 None:intergenic 35.0%
!! CAGACAACTTAGGTTTTGTA+AGG + chr5_2:43184492-43184511 Msa0771090:intron 35.0%
!! ACAACTTAGGTTTTGTAAGG+AGG + chr5_2:43184495-43184514 Msa0771090:intron 35.0%
GTAAGAATCTACGTTTAACC+GGG - chr5_2:43184551-43184570 None:intergenic 35.0%
GGTAAGAATCTACGTTTAAC+CGG - chr5_2:43184552-43184571 None:intergenic 35.0%
! TGCGTAACTTGCGTTATAAA+AGG - chr5_2:43184573-43184592 None:intergenic 35.0%
GTTACGCAATTACAAGTCTT+TGG + chr5_2:43184585-43184604 Msa0771090:intron 35.0%
GTCCAAATATGAGAATTCAC+TGG + chr5_2:43184696-43184715 Msa0771090:CDS 35.0%
CACCAGTGAATTCTCATATT+TGG - chr5_2:43184701-43184720 None:intergenic 35.0%
TCACTGGTGACAAAATTCTT+TGG + chr5_2:43184712-43184731 Msa0771090:CDS 35.0%
CACTGGTGACAAAATTCTTT+GGG + chr5_2:43184713-43184732 Msa0771090:CDS 35.0%
ACTGGTGACAAAATTCTTTG+GGG + chr5_2:43184714-43184733 Msa0771090:CDS 35.0%
GTACATTGTGTGAAACCTAT+TGG + chr5_2:43184736-43184755 Msa0771090:CDS 35.0%
! ATCTATCGATCCATACCTTT+TGG - chr5_2:43184765-43184784 None:intergenic 35.0%
! GCCTGACTTTTCATTGTTAT+TGG + chr5_2:43184829-43184848 Msa0771090:intron 35.0%
GATTTGAAAGGATCTTCACA+TGG + chr5_2:43184920-43184939 Msa0771090:CDS 35.0%
GAAACACATAGTTCAGATCA+AGG - chr5_2:43185000-43185019 None:intergenic 35.0%
TGTTTCGTGTACAACGAAAT+TGG + chr5_2:43185014-43185033 Msa0771090:CDS 35.0%
AACACTCACTATAGAGCATA+TGG + chr5_2:43185300-43185319 Msa0771090:intron 35.0%
CACTATAGAGCATATGGTTA+TGG + chr5_2:43185306-43185325 Msa0771090:intron 35.0%
AGAATCCTGATTGCCTAAAA+GGG - chr5_2:43185368-43185387 None:intergenic 35.0%
AAGAATCCTGATTGCCTAAA+AGG - chr5_2:43185369-43185388 None:intergenic 35.0%
ACTTGCAACCAAAGCTAAAT+TGG + chr5_2:43185553-43185572 Msa0771090:intron 35.0%
AGCTAAATTGGAAAAGCTTC+AGG + chr5_2:43185565-43185584 Msa0771090:intron 35.0%
GCTAAATTGGAAAAGCTTCA+GGG + chr5_2:43185566-43185585 Msa0771090:intron 35.0%
CTAAATTGGAAAAGCTTCAG+GGG + chr5_2:43185567-43185586 Msa0771090:intron 35.0%
!! TTAAGTGGGTATAGTTTTGC+AGG + chr5_2:43185860-43185879 Msa0771090:intron 35.0%
TTGCAGGAAATAGTTGTTTG+TGG + chr5_2:43185876-43185895 Msa0771090:intron 35.0%
TGCAGGAAATAGTTGTTTGT+GGG + chr5_2:43185877-43185896 Msa0771090:intron 35.0%
AAAGAACATGAACGCAAAGA+CGG - chr5_2:43186005-43186024 None:intergenic 35.0%
ACTTTCTGTTACTGTGTTTG+TGG + chr5_2:43186067-43186086 Msa0771090:intron 35.0%
TTTGATCAATACACCAATGG+TGG + chr5_2:43186285-43186304 Msa0771090:CDS 35.0%
CATTTGAATCCTTATAGCAG+CGG + chr5_2:43186315-43186334 Msa0771090:CDS 35.0%
ATTTGAATCCTTATAGCAGC+GGG + chr5_2:43186316-43186335 Msa0771090:CDS 35.0%
! TGGGGTTATCGATATTTTAC+AGG + chr5_2:43186365-43186384 Msa0771090:CDS 35.0%
TGACCAGTTAGTACAAAATG+AGG + chr5_2:43186532-43186551 Msa0771090:three_prime_UTR 35.0%
! TCATGGCATTTTTAACCTTC+AGG - chr5_2:43186572-43186591 None:intergenic 35.0%
CATGATGATCACAAAAATCC+AGG + chr5_2:43186594-43186613 Msa0771090:three_prime_UTR 35.0%
CTGATGAACAGTAAACTCTA+AGG - chr5_2:43186661-43186680 None:intergenic 35.0%
GTTCATCAGATCATTGTAAG+TGG + chr5_2:43186672-43186691 Msa0771090:three_prime_UTR 35.0%
TCATCAGATCATTGTAAGTG+GGG + chr5_2:43186674-43186693 Msa0771090:three_prime_UTR 35.0%
AACTCAAGTGAGATTCTTTG+AGG - chr5_2:43186700-43186719 None:intergenic 35.0%
TCAAAGAATCTCACTTGAGT+TGG + chr5_2:43186699-43186718 Msa0771090:three_prime_UTR 35.0%
!!! CTTGAGTTGGTGTTGTTTTT+TGG + chr5_2:43186712-43186731 Msa0771090:three_prime_UTR 35.0%
AATGGAAAATTGTTTCCCTG+AGG + chr5_2:43186921-43186940 Msa0771090:three_prime_UTR 35.0%
ACAGTTGTTATACAAAAGGG+TGG + chr5_2:43186989-43187008 Msa0771090:three_prime_UTR 35.0%
TTGTTATACAAAAGGGTGGA+TGG + chr5_2:43186993-43187012 Msa0771090:three_prime_UTR 35.0%
GTGTTTGGAGAAAAACGAGT+GGG - chr5_2:43182532-43182551 None:intergenic 40.0%
AGTGTTTGGAGAAAAACGAG+TGG - chr5_2:43182533-43182552 None:intergenic 40.0%
TAAAAAAAAAACCTCGCCGC+CGG + chr5_2:43182581-43182600 Msa0771090:five_prime_UTR 40.0%
! TCAATGCTCAGTGCATTTTC+CGG - chr5_2:43182618-43182637 None:intergenic 40.0%
!! GAAGGTTTGTTTTCCTTCTC+CGG - chr5_2:43182738-43182757 None:intergenic 40.0%
ATGGAAACGTGGAAAAGCTT+CGG + chr5_2:43182965-43182984 Msa0771090:CDS 40.0%
CGAACGGTGATTTATACGAA+GGG + chr5_2:43183147-43183166 Msa0771090:CDS 40.0%
GACGTTACGTTTGGAAGAAT+GGG + chr5_2:43183201-43183220 Msa0771090:CDS 40.0%
! GGAATGAGTATGTTGGTGAA+TGG + chr5_2:43183222-43183241 Msa0771090:CDS 40.0%
! TATGTTGGTGAATGGCGTAA+CGG + chr5_2:43183230-43183249 Msa0771090:CDS 40.0%
! GGTTCGTTAGTTTGGGTTAA+CGG + chr5_2:43183269-43183288 Msa0771090:CDS 40.0%
!!! ATGGTTTTGGTGGGTTTGTT+TGG + chr5_2:43183357-43183376 Msa0771090:CDS 40.0%
AACGTTTCCTCATCAACACA+GGG - chr5_2:43183397-43183416 None:intergenic 40.0%
GATACTACTGTTAGTGGTAG+AGG + chr5_2:43183425-43183444 Msa0771090:CDS 40.0%
! GCTTCTATGTTTTATCGCGA+TGG + chr5_2:43183542-43183561 Msa0771090:CDS 40.0%
! GGATGTTTTCGAAACTCATC+AGG - chr5_2:43183581-43183600 None:intergenic 40.0%
!! TCCTTGTTGTTTCTCTTCTG+AGG + chr5_2:43183598-43183617 Msa0771090:CDS 40.0%
ACCTCAGAAGAGAAACAACA+AGG - chr5_2:43183602-43183621 None:intergenic 40.0%
GTTATGTGTAGATACACGGT+TGG + chr5_2:43183794-43183813 Msa0771090:intron 40.0%
TTGATCCTAAGGAGAAGTTC+TGG + chr5_2:43183858-43183877 Msa0771090:CDS 40.0%
GTAATCTTGGATCCTTCACT+CGG - chr5_2:43183893-43183912 None:intergenic 40.0%
TCGATGGAAAGATTACTGTC+CGG + chr5_2:43183937-43183956 Msa0771090:CDS 40.0%
!! CGGGTGTTTTGGATGATTTT+TGG + chr5_2:43184059-43184078 Msa0771090:intron 40.0%
! ACATTTGAGGAAGCTGTTTC+AGG + chr5_2:43184153-43184172 Msa0771090:CDS 40.0%
CGATTTGACTAACAGTTGAC+TGG - chr5_2:43184463-43184482 None:intergenic 40.0%
GTTAGTAGACCAGACAACTT+AGG + chr5_2:43184482-43184501 Msa0771090:intron 40.0%
!! TTAGGTTTTGTAAGGAGGTC+TGG + chr5_2:43184500-43184519 Msa0771090:intron 40.0%
TTGTCGCTATTCGAATATCC+CGG + chr5_2:43184530-43184549 Msa0771090:intron 40.0%
!! CCAACTTTTAGGTGCTTCTT+CGG + chr5_2:43184647-43184666 Msa0771090:intron 40.0%
CATTGTGTGAAACCTATTGG+AGG + chr5_2:43184739-43184758 Msa0771090:CDS 40.0%
ACAATGAAAAGTCAGGCACA+GGG - chr5_2:43184826-43184845 None:intergenic 40.0%
AACAATGAAAAGTCAGGCAC+AGG - chr5_2:43184827-43184846 None:intergenic 40.0%
TCAGATCCGGTTTATTGTGA+TGG + chr5_2:43184856-43184875 Msa0771090:intron 40.0%
CAGATCCGGTTTATTGTGAT+GGG + chr5_2:43184857-43184876 Msa0771090:intron 40.0%
GATTGCCCATCACAATAAAC+CGG - chr5_2:43184865-43184884 None:intergenic 40.0%
GTTTCATCAATCTCATCCTC+AGG - chr5_2:43184962-43184981 None:intergenic 40.0%
GTTCAGATCAAGGTCTTTGA+GGG - chr5_2:43184990-43185009 None:intergenic 40.0%
AGTTCAGATCAAGGTCTTTG+AGG - chr5_2:43184991-43185010 None:intergenic 40.0%
TGTACAACGAAATTGGTACC+AGG + chr5_2:43185021-43185040 Msa0771090:CDS 40.0%
TGTGTTCCAGACAAATTGAG+CGG + chr5_2:43185149-43185168 Msa0771090:intron 40.0%
!! ATGGACTACAGTCTTTTGGT+TGG + chr5_2:43185202-43185221 Msa0771090:CDS 40.0%
ATACCAGTGCGTAGAAGAAA+AGG - chr5_2:43185274-43185293 None:intergenic 40.0%
! GCGATATTCTTTCCCCTTTT+AGG + chr5_2:43185352-43185371 Msa0771090:intron 40.0%
GAATCCTGATTGCCTAAAAG+GGG - chr5_2:43185367-43185386 None:intergenic 40.0%
GATAGGGATCGAGTTAAATC+TGG + chr5_2:43185442-43185461 Msa0771090:CDS 40.0%
TATATTAGGGCTTGTGCTGT+TGG + chr5_2:43185658-43185677 Msa0771090:intron 40.0%
CTTTGCGTTCATGTTCTTTC+TGG + chr5_2:43186006-43186025 Msa0771090:intron 40.0%
CGCTGCTATAAGGATTCAAA+TGG - chr5_2:43186317-43186336 None:intergenic 40.0%
TTTGAATCCTTATAGCAGCG+GGG + chr5_2:43186317-43186336 Msa0771090:CDS 40.0%
TTGAAACCCACTTGCAAAAG+AGG + chr5_2:43186633-43186652 Msa0771090:three_prime_UTR 40.0%
TGAAACCCACTTGCAAAAGA+GGG + chr5_2:43186634-43186653 Msa0771090:three_prime_UTR 40.0%
GATCCAGCAAATCATCATCA+TGG - chr5_2:43186757-43186776 None:intergenic 40.0%
!! TGATGATGATTTGCTGGATC+AGG + chr5_2:43186757-43186776 Msa0771090:three_prime_UTR 40.0%
!! GATGATGATTTGCTGGATCA+GGG + chr5_2:43186758-43186777 Msa0771090:three_prime_UTR 40.0%
AATATAGGAAGAGGGGTGAA+TGG + chr5_2:43186903-43186922 Msa0771090:three_prime_UTR 40.0%
!! ACTGAGCATTGATTTCTCGC+CGG + chr5_2:43182626-43182645 Msa0771090:five_prime_UTR 45.0%
GGTGAACGATGAAGTTGTTG+AGG + chr5_2:43182680-43182699 Msa0771090:CDS 45.0%
GAAGAGCAACATTCCTGAAC+CGG + chr5_2:43182716-43182735 Msa0771090:CDS 45.0%
! TTGTTTTCCTTCTCCGGTTC+AGG - chr5_2:43182732-43182751 None:intergenic 45.0%
GGAAAACAAACCTTCTCCAC+CGG + chr5_2:43182743-43182762 Msa0771090:CDS 45.0%
CTCAACAACGGATCTACCAT+CGG - chr5_2:43182841-43182860 None:intergenic 45.0%
!! CGGAAGTACTCTCTCAACAA+CGG - chr5_2:43182853-43182872 None:intergenic 45.0%
!! GTTGAGAGAGTACTTCCGAA+CGG + chr5_2:43182855-43182874 Msa0771090:CDS 45.0%
AGATACTTCCCGGATCCATT+CGG - chr5_2:43182915-43182934 None:intergenic 45.0%
!! ATGGATCCGGGAAGTATCTA+TGG + chr5_2:43182916-43182935 Msa0771090:CDS 45.0%
GTTGCATGTACGAAGGTGAA+TGG + chr5_2:43182946-43182965 Msa0771090:CDS 45.0%
TACGAAGGTGAATGGAAACG+TGG + chr5_2:43182954-43182973 Msa0771090:CDS 45.0%
TGGAAACGTGGAAAAGCTTC+GGG + chr5_2:43182966-43182985 Msa0771090:CDS 45.0%
TTACGAGGGAGAGTTCAAGT+CGG + chr5_2:43183022-43183041 Msa0771090:CDS 45.0%
GAAGGATTCGGAACATTCGT+TGG + chr5_2:43183053-43183072 Msa0771090:CDS 45.0%
TGGAGCTCCGATAGAAAACA+CGG + chr5_2:43183104-43183123 Msa0771090:CDS 45.0%
TCCGATAGAAAACACGGGTT+CGG + chr5_2:43183110-43183129 Msa0771090:CDS 45.0%
! ACCGAACCCGTGTTTTCTAT+CGG - chr5_2:43183114-43183133 None:intergenic 45.0%
GCGAACGGTGATTTATACGA+AGG + chr5_2:43183146-43183165 Msa0771090:CDS 45.0%
ACGGTGATTTATACGAAGGG+TGG + chr5_2:43183150-43183169 Msa0771090:CDS 45.0%
GTGATTTATACGAAGGGTGG+TGG + chr5_2:43183153-43183172 Msa0771090:CDS 45.0%
! TGGAAGCGTAACGTTCAAGA+TGG + chr5_2:43183173-43183192 Msa0771090:CDS 45.0%
CGTAACGTTCAAGATGGTCA+AGG + chr5_2:43183179-43183198 Msa0771090:CDS 45.0%
ATGGTCAAGGACGTTACGTT+TGG + chr5_2:43183192-43183211 Msa0771090:CDS 45.0%
GGACGTTACGTTTGGAAGAA+TGG + chr5_2:43183200-43183219 Msa0771090:CDS 45.0%
TAACGGCGTTATATCTGGGA+AGG + chr5_2:43183247-43183266 Msa0771090:CDS 45.0%
AACGGCGTTATATCTGGGAA+GGG + chr5_2:43183248-43183267 Msa0771090:CDS 45.0%
! TGGGAAGGGTTCGTTAGTTT+GGG + chr5_2:43183262-43183281 Msa0771090:CDS 45.0%
TTGGGTTAACGGAAACCGTT+TGG + chr5_2:43183280-43183299 Msa0771090:CDS 45.0%
GTTAACGGAAACCGTTTGGA+GGG + chr5_2:43183284-43183303 Msa0771090:CDS 45.0%
AAACCGTTTGGAGGGTTTGT+GGG + chr5_2:43183292-43183311 Msa0771090:CDS 45.0%
AATGGTGTTCCGAAAGGACA+AGG + chr5_2:43183317-43183336 Msa0771090:CDS 45.0%
!! ATTTTGCCCCTGTGTTGATG+AGG + chr5_2:43183387-43183406 Msa0771090:CDS 45.0%
ACGTTTCCTCATCAACACAG+GGG - chr5_2:43183396-43183415 None:intergenic 45.0%
GAACGTTTCCTCATCAACAC+AGG - chr5_2:43183398-43183417 None:intergenic 45.0%
!! TCTTCTGAGGTTAAGAGACC+TGG + chr5_2:43183611-43183630 Msa0771090:CDS 45.0%
CTTGTCCAGAACTTCTCCTT+AGG - chr5_2:43183866-43183885 None:intergenic 45.0%
!! CTAAGGAGAAGTTCTGGACA+AGG + chr5_2:43183864-43183883 Msa0771090:CDS 45.0%
ATCAAACCACGGAGTTTCGA+TGG + chr5_2:43183921-43183940 Msa0771090:CDS 45.0%
ATCTTTCCATCGAAACTCCG+TGG - chr5_2:43183930-43183949 None:intergenic 45.0%
CTTAGAGAACTTTCCTCTCC+CGG + chr5_2:43184220-43184239 Msa0771090:CDS 45.0%
TTAGAGAACTTTCCTCTCCC+GGG + chr5_2:43184221-43184240 Msa0771090:CDS 45.0%
!! AAAACACTTCCGCTTTTCCC+GGG - chr5_2:43184241-43184260 None:intergenic 45.0%
!! GAAAACACTTCCGCTTTTCC+CGG - chr5_2:43184242-43184261 None:intergenic 45.0%
!! CCGAAGAAGCACCTAAAAGT+TGG - chr5_2:43184650-43184669 None:intergenic 45.0%
GAAACCTATTGGAGGCCAAA+AGG + chr5_2:43184747-43184766 Msa0771090:CDS 45.0%
! CATACCTTTTGGCCTCCAAT+AGG - chr5_2:43184754-43184773 None:intergenic 45.0%
CTATTGGAGGCCAAAAGGTA+TGG + chr5_2:43184752-43184771 Msa0771090:intron 45.0%
TCGTGCAACAGATAAACCTG+AGG + chr5_2:43184943-43184962 Msa0771090:CDS 45.0%
GTGTTCCAGACAAATTGAGC+GGG + chr5_2:43185150-43185169 Msa0771090:intron 45.0%
ACAATCCCGCTCAATTTGTC+TGG - chr5_2:43185158-43185177 None:intergenic 45.0%
! TCACCTTTTCTTCTACGCAC+TGG + chr5_2:43185268-43185287 Msa0771090:CDS 45.0%
! CTTTCCCCTTTTAGGCAATC+AGG + chr5_2:43185360-43185379 Msa0771090:intron 45.0%
CATACTGAGAAGTTCATGCG+TGG + chr5_2:43185391-43185410 Msa0771090:CDS 45.0%
TCGAAGCAGAGTTGCAAGAT+AGG + chr5_2:43185425-43185444 Msa0771090:CDS 45.0%
CGAAGCAGAGTTGCAAGATA+GGG + chr5_2:43185426-43185445 Msa0771090:CDS 45.0%
GGGATCGAGTTAAATCTGGA+AGG + chr5_2:43185446-43185465 Msa0771090:CDS 45.0%
TTTAAGCCGGCATGTGTTAC+AGG - chr5_2:43185756-43185775 None:intergenic 45.0%
TTCTGCTCTTGCTGGCATAT+TGG - chr5_2:43186244-43186263 None:intergenic 45.0%
ATATGCCAGCAAGAGCAGAA+CGG + chr5_2:43186244-43186263 Msa0771090:CDS 45.0%
! CAAATGGCTGATTCCACCAT+TGG - chr5_2:43186301-43186320 None:intergenic 45.0%
! AAGGTCCCTCTTTTGCAAGT+GGG - chr5_2:43186642-43186661 None:intergenic 45.0%
! TAAGGTCCCTCTTTTGCAAG+TGG - chr5_2:43186643-43186662 None:intergenic 45.0%
! CAGCCATGATGATGATTTGC+TGG + chr5_2:43186751-43186770 Msa0771090:three_prime_UTR 45.0%
CAACATTCCTGAACCGGAGA+AGG + chr5_2:43182722-43182741 Msa0771090:CDS 50.0%
AAACAAACCTTCTCCACCGG+CGG + chr5_2:43182746-43182765 Msa0771090:CDS 50.0%
GTCTACCACCTCCTTGTGAA+CGG - chr5_2:43182788-43182807 None:intergenic 50.0%
TTCTACGCCGGAAGTTTCTC+CGG + chr5_2:43182882-43182901 Msa0771090:CDS 50.0%
TACGTTGCCGGAGAAACTTC+CGG - chr5_2:43182892-43182911 None:intergenic 50.0%
GTCGGTCCATAGATACTTCC+CGG - chr5_2:43182925-43182944 None:intergenic 50.0%
!! GGGAAGTATCTATGGACCGA+CGG + chr5_2:43182924-43182943 Msa0771090:CDS 50.0%
ACCTTCGTACATGCAACCGT+CGG - chr5_2:43182943-43182962 None:intergenic 50.0%
GGAAACGTGGAAAAGCTTCG+GGG + chr5_2:43182967-43182986 Msa0771090:CDS 50.0%
GTGGAAAAGCTTCGGGGAAA+GGG + chr5_2:43182973-43182992 Msa0771090:CDS 50.0%
! CGGGGAAAGGGAAGTTTTCA+TGG + chr5_2:43182985-43183004 Msa0771090:CDS 50.0%
! GGGAAGTTTTCATGGCCTTC+AGG + chr5_2:43182993-43183012 Msa0771090:CDS 50.0%
TACGAGGGAGAGTTCAAGTC+GGG + chr5_2:43183023-43183042 Msa0771090:CDS 50.0%
AGAGTTCAAGTCGGGTCGAA+TGG + chr5_2:43183031-43183050 Msa0771090:CDS 50.0%
TTCAAGTCGGGTCGAATGGA+AGG + chr5_2:43183035-43183054 Msa0771090:CDS 50.0%
TCGGGTCGAATGGAAGGATT+CGG + chr5_2:43183041-43183060 Msa0771090:CDS 50.0%
GGAACATTCGTTGGATCCGA+CGG + chr5_2:43183062-43183081 Msa0771090:CDS 50.0%
TCCGACGGTGATACATATCG+CGG + chr5_2:43183077-43183096 Msa0771090:CDS 50.0%
GGAGCTCCGATAGAAAACAC+GGG + chr5_2:43183105-43183124 Msa0771090:CDS 50.0%
GGTCAGAAACGTTACGCGAA+CGG + chr5_2:43183131-43183150 Msa0771090:CDS 50.0%
TGGCGTAACGGCGTTATATC+TGG + chr5_2:43183242-43183261 Msa0771090:CDS 50.0%
GGCGTAACGGCGTTATATCT+GGG + chr5_2:43183243-43183262 Msa0771090:CDS 50.0%
CTGGGAAGGGTTCGTTAGTT+TGG + chr5_2:43183261-43183280 Msa0771090:CDS 50.0%
GGTTAACGGAAACCGTTTGG+AGG + chr5_2:43183283-43183302 Msa0771090:CDS 50.0%
GAAACCGTTTGGAGGGTTTG+TGG + chr5_2:43183291-43183310 Msa0771090:CDS 50.0%
TCTCCCACAAACCCTCCAAA+CGG - chr5_2:43183298-43183317 None:intergenic 50.0%
TTGGAGGGTTTGTGGGAGAA+TGG + chr5_2:43183299-43183318 Msa0771090:CDS 50.0%
TGGGAGAATGGTGTTCCGAA+AGG + chr5_2:43183311-43183330 Msa0771090:CDS 50.0%
TGGGAATCTGAAGGTGAAGC+TGG + chr5_2:43183485-43183504 Msa0771090:CDS 50.0%
GTGTAGATACACGGTTGGGA+AGG + chr5_2:43183799-43183818 Msa0771090:intron 50.0%
TGGACAAGGTTTCCGAGTGA+AGG + chr5_2:43183878-43183897 Msa0771090:CDS 50.0%
TTGATGAGGCGGGGTAATCT+TGG - chr5_2:43183906-43183925 None:intergenic 50.0%
AACTCCGTGGTTTGATGAGG+CGG - chr5_2:43183917-43183936 None:intergenic 50.0%
CGAAACTCCGTGGTTTGATG+AGG - chr5_2:43183920-43183939 None:intergenic 50.0%
AGTCAGGCACAGGGAAACAT+GGG - chr5_2:43184817-43184836 None:intergenic 50.0%
AAGTCAGGCACAGGGAAACA+TGG - chr5_2:43184818-43184837 None:intergenic 50.0%
! CAGATCAAGGTCTTTGAGGG+TGG - chr5_2:43184987-43185006 None:intergenic 50.0%
TGAGCGGGATTGTGAGTTCT+TGG + chr5_2:43185165-43185184 Msa0771090:CDS 50.0%
TGTAGGCCTGTAACACATGC+CGG + chr5_2:43185747-43185766 Msa0771090:intron 50.0%
TGTGGGACATATGCAAGCTG+TGG + chr5_2:43185894-43185913 Msa0771090:intron 50.0%
! TTTTCCGGCGAGATTCGTGC+CGG - chr5_2:43182603-43182622 None:intergenic 55.0%
CTTCTTCCAGCAATCACCGC+CGG - chr5_2:43182765-43182784 None:intergenic 55.0%
GCTGGAAGAAGCCGTTCACA+AGG + chr5_2:43182774-43182793 Msa0771090:CDS 55.0%
GGAAGAAGCCGTTCACAAGG+AGG + chr5_2:43182777-43182796 Msa0771090:CDS 55.0%
AGAAGCCGTTCACAAGGAGG+TGG + chr5_2:43182780-43182799 Msa0771090:CDS 55.0%
AGTGACACCGACGAGCTTCA+CGG + chr5_2:43182809-43182828 Msa0771090:CDS 55.0%
GAAACCACCGTGAAGCTCGT+CGG - chr5_2:43182819-43182838 None:intergenic 55.0%
AGCTTCACGGTGGTTTCCGA+TGG + chr5_2:43182822-43182841 Msa0771090:CDS 55.0%
CCGGCGTAGAAATCTCCGTT+CGG - chr5_2:43182873-43182892 None:intergenic 55.0%
CCGAACGGAGATTTCTACGC+CGG + chr5_2:43182870-43182889 Msa0771090:CDS 55.0%
TTCTCCGGCAACGTACCGAA+TGG + chr5_2:43182897-43182916 Msa0771090:CDS 55.0%
GGATCCATTCGGTACGTTGC+CGG - chr5_2:43182904-43182923 None:intergenic 55.0%
GGCAACGTACCGAATGGATC+CGG + chr5_2:43182903-43182922 Msa0771090:CDS 55.0%
GCAACGTACCGAATGGATCC+GGG + chr5_2:43182904-43182923 Msa0771090:CDS 55.0%
ACCGACGGTTGCATGTACGA+AGG + chr5_2:43182939-43182958 Msa0771090:CDS 55.0%
CGTGGAAAAGCTTCGGGGAA+AGG + chr5_2:43182972-43182991 Msa0771090:CDS 55.0%
CCCGCGATATGTATCACCGT+CGG - chr5_2:43183081-43183100 None:intergenic 55.0%
CCGACGGTGATACATATCGC+GGG + chr5_2:43183078-43183097 Msa0771090:CDS 55.0%
GTGATACATATCGCGGGTCG+TGG + chr5_2:43183084-43183103 Msa0771090:CDS 55.0%
TACCCCGCCTCATCAAACCA+CGG + chr5_2:43183910-43183929 Msa0771090:CDS 55.0%
ACTCCGTGGTTTGATGAGGC+GGG - chr5_2:43183916-43183935 None:intergenic 55.0%
CTTTCCTCTCCCGGGAAAAG+CGG + chr5_2:43184229-43184248 Msa0771090:CDS 55.0%
CAAGAGCAGAACGGTTGGCA+AGG + chr5_2:43186253-43186272 Msa0771090:CDS 55.0%
GAATCCTTATAGCAGCGGGG+AGG + chr5_2:43186320-43186339 Msa0771090:CDS 55.0%
TAAGCCTCCCCGCTGCTATA+AGG - chr5_2:43186327-43186346 None:intergenic 55.0%
CCTTCAGGCGCGACTTACGA+GGG + chr5_2:43183008-43183027 Msa0771090:CDS 60.0%
CTCCGTGGTTTGATGAGGCG+GGG - chr5_2:43183915-43183934 None:intergenic 60.0%
!! ACTTCCGCTTTTCCCGGGAG+AGG - chr5_2:43184236-43184255 None:intergenic 60.0%
GCCAGCAAGAGCAGAACGGT+TGG + chr5_2:43186248-43186267 Msa0771090:CDS 60.0%
GCCAACCGTTCTGCTCTTGC+TGG - chr5_2:43186252-43186271 None:intergenic 60.0%
GAGCAGAACGGTTGGCAAGG+AGG + chr5_2:43186256-43186275 Msa0771090:CDS 60.0%
GCAATCACCGCCGGTGGAGA+AGG - chr5_2:43182756-43182775 None:intergenic 65.0%
TCTCCACCGGCGGTGATTGC+TGG + chr5_2:43182756-43182775 Msa0771090:CDS 65.0%
CTTCCAGCAATCACCGCCGG+TGG - chr5_2:43182762-43182781 None:intergenic 65.0%
GACACCGACGAGCTTCACGG+TGG + chr5_2:43182812-43182831 Msa0771090:CDS 65.0%
GCCTTCAGGCGCGACTTACG+AGG + chr5_2:43183007-43183026 Msa0771090:CDS 65.0%
CCCTCGTAAGTCGCGCCTGA+AGG - chr5_2:43183011-43183030 None:intergenic 65.0%
TCCGGCGAGATTCGTGCCGG+CGG - chr5_2:43182600-43182619 None:intergenic 70.0%
! CGAGATTCGTGCCGGCGGCG+AGG - chr5_2:43182595-43182614 None:intergenic 75.0%
GCCGCCGGCACGAATCTCGC+CGG + chr5_2:43182596-43182615 Msa0771090:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 43182478 43187109 43182478 ID=Msa0771090;Name=Msa0771090
chr5_2 mRNA 43182478 43187109 43182478 ID=Msa0771090-mRNA-1;Parent=Msa0771090;Name=Msa0771090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=188|1|1|1|1|1|8|582|733
chr5_2 exon 43182478 43183696 43182478 ID=Msa0771090-mRNA-1:exon:13319;Parent=Msa0771090-mRNA-1
chr5_2 exon 43183805 43183969 43183805 ID=Msa0771090-mRNA-1:exon:13320;Parent=Msa0771090-mRNA-1
chr5_2 exon 43184153 43184318 43184153 ID=Msa0771090-mRNA-1:exon:13321;Parent=Msa0771090-mRNA-1
chr5_2 exon 43184658 43184768 43184658 ID=Msa0771090-mRNA-1:exon:13322;Parent=Msa0771090-mRNA-1
chr5_2 exon 43184860 43185053 43184860 ID=Msa0771090-mRNA-1:exon:13323;Parent=Msa0771090-mRNA-1
chr5_2 exon 43185159 43185289 43185159 ID=Msa0771090-mRNA-1:exon:13324;Parent=Msa0771090-mRNA-1
chr5_2 exon 43185374 43185467 43185374 ID=Msa0771090-mRNA-1:exon:13325;Parent=Msa0771090-mRNA-1
chr5_2 exon 43186218 43187109 43186218 ID=Msa0771090-mRNA-1:exon:13326;Parent=Msa0771090-mRNA-1
chr5_2 five_prime_UTR 43182478 43182665 43182478 ID=Msa0771090-mRNA-1:five_prime_utr;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43182666 43183696 43182666 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43183805 43183969 43183805 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43184153 43184318 43184153 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43184658 43184768 43184658 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43184860 43185053 43184860 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43185159 43185289 43185159 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43185374 43185467 43185374 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 CDS 43186218 43186527 43186218 ID=Msa0771090-mRNA-1:cds;Parent=Msa0771090-mRNA-1
chr5_2 three_prime_UTR 43186528 43187109 43186528 ID=Msa0771090-mRNA-1:three_prime_utr;Parent=Msa0771090-mRNA-1
Gene Sequence

>Msa0771090

ATGAGTGATACAGTGGTGAACGATGAAGTTGTTGAGGTTGTTAGTTCAACGAAGAGCAACATTCCTGAACCGGAGAAGGAAAACAAACCTTCTCCACCGGCGGTGATTGCTGGAAGAAGCCGTTCACAAGGAGGTGGTAGACGAGTGACACCGACGAGCTTCACGGTGGTTTCCGATGGTAGATCCGTTGTTGAGAGAGTACTTCCGAACGGAGATTTCTACGCCGGAAGTTTCTCCGGCAACGTACCGAATGGATCCGGGAAGTATCTATGGACCGACGGTTGCATGTACGAAGGTGAATGGAAACGTGGAAAAGCTTCGGGGAAAGGGAAGTTTTCATGGCCTTCAGGCGCGACTTACGAGGGAGAGTTCAAGTCGGGTCGAATGGAAGGATTCGGAACATTCGTTGGATCCGACGGTGATACATATCGCGGGTCGTGGAGCTCCGATAGAAAACACGGGTTCGGTCAGAAACGTTACGCGAACGGTGATTTATACGAAGGGTGGTGGAAGCGTAACGTTCAAGATGGTCAAGGACGTTACGTTTGGAAGAATGGGAATGAGTATGTTGGTGAATGGCGTAACGGCGTTATATCTGGGAAGGGTTCGTTAGTTTGGGTTAACGGAAACCGTTTGGAGGGTTTGTGGGAGAATGGTGTTCCGAAAGGACAAGGTGTTATGAAGATTCAACATGGTTTTGGTGGGTTTGTTTGGAATGACAATTTTGCCCCTGTGTTGATGAGGAAACGTTCTTCTGTTGATACTACTGTTAGTGGTAGAGGGAGTTTGAATGAGAAGAATTTTCCTAGGATTTGTATTTGGGAATCTGAAGGTGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTCGAGGCTTCTATGTTTTATCGCGATGGAACGTGTTCCGATCCTGATGAGTTTCGAAAACATCCTTGTTGTTTCTCTTCTGAGGTTAAGAGACCTGGTCAAACTATTTCTAAAGGGCATAAGAATTATGAGTTGATGCTTAATTTGCAATTGGGGATTAGATACACGGTTGGGAAGGAAGCGTCGAAGTTGCGAGAGCTTAAACCTAGTGATTTTGATCCTAAGGAGAAGTTCTGGACAAGGTTTCCGAGTGAAGGATCCAAGATTACCCCGCCTCATCAAACCACGGAGTTTCGATGGAAAGATTACTGTCCGGTTGTTTTTAGACATTTGAGGAAGCTGTTTCAGGTTGATCCTGCTGATTATATGTTGGCTATATGTGGGGATGATGCTCTTAGAGAACTTTCCTCTCCCGGGAAAAGCGGAAGTGTTTTCTACTTGACCCAAGATGACAGATTCATGATTAAGACAGTGAAGAAATCTGAAGTCAAGGTGCTTCTTCGGATGCTTCGAAGCTATTACAAACACGTGTCCAAATATGAGAATTCACTGGTGACAAAATTCTTTGGGGTACATTGTGTGAAACCTATTGGAGGCCAAAAGATCCGGTTTATTGTGATGGGCAATCTTTTCTGCTCTGAATATCCAATTCATAGACGATTTGATTTGAAAGGATCTTCACATGGTCGTGCAACAGATAAACCTGAGGATGAGATTGATGAAACAACCACCCTCAAAGACCTTGATCTGAACTATGTGTTTCGTGTACAACGAAATTGGTACCAGGATCTTATTAAACAAATTGAGCGGGATTGTGAGTTCTTGGAAAACGAGAAAATTATGGACTACAGTCTTTTGGTTGGCCTTCATTTTCGTGATGATAACACTTATGACAAAATGGGGTTGTCACCTTTTCTTCTACGCACTGGCAATCAGGATTCTTATCATACTGAGAAGTTCATGCGTGGTTATCGCTTTCTCGAAGCAGAGTTGCAAGATAGGGATCGAGTTAAATCTGGAAGAAAATCATTAATCAGGCTAGGAGCCAATATGCCAGCAAGAGCAGAACGGTTGGCAAGGAGGAGTGATTTTGATCAATACACCAATGGTGGAATCAGCCATTTGAATCCTTATAGCAGCGGGGAGGCTTATGATTGCGTTCTATATTTTGGGGTTATCGATATTTTACAGGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAGTCTTTGCAAGTTGACTCTACTTCAATTTCTGCTGTTGATCCAAAGCTATACTCAAAAAGGTTTCGAGATTTTGTTGGAAGAATATTCATTGAAGATTGGTAA
Protein sequence

>Msa0771090

MSDTVVNDEVVEVVSSTKSNIPEPEKENKPSPPAVIAGRSRSQGGGRRVTPTSFTVVSDGRSVVERVLPNGDFYAGSFSGNVPNGSGKYLWTDGCMYEGEWKRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFVGSDGDTYRGSWSSDRKHGFGQKRYANGDLYEGWWKRNVQDGQGRYVWKNGNEYVGEWRNGVISGKGSLVWVNGNRLEGLWENGVPKGQGVMKIQHGFGGFVWNDNFAPVLMRKRSSVDTTVSGRGSLNEKNFPRICIWESEGEAGDITCDIVDNVEASMFYRDGTCSDPDEFRKHPCCFSSEVKRPGQTISKGHKNYELMLNLQLGIRYTVGKEASKLRELKPSDFDPKEKFWTRFPSEGSKITPPHQTTEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSVFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYKHVSKYENSLVTKFFGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRATDKPEDEIDETTTLKDLDLNYVFRVQRNWYQDLIKQIERDCEFLENEKIMDYSLLVGLHFRDDNTYDKMGLSPFLLRTGNQDSYHTEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERLARRSDFDQYTNGGISHLNPYSSGEAYDCVLYFGVIDILQDYDISKKLEHAYKSLQVDSTSISAVDPKLYSKRFRDFVGRIFIEDW*