AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154540 MtrunA17_Chr7g0245591 99.526 422 2 0 1 422 1 422 0.0 870
Msa1154540 MtrunA17_Chr8g0389111 67.120 368 107 3 55 422 65 418 0.0 517
Msa1154540 MtrunA17_Chr2g0297021 40.000 145 79 3 50 190 11 151 3.93e-28 112
Msa1154540 MtrunA17_Chr2g0297021 32.051 156 101 3 258 411 18 170 4.49e-17 81.3
Msa1154540 MtrunA17_Chr3g0120311 39.437 142 78 3 53 190 16 153 6.74e-26 106
Msa1154540 MtrunA17_Chr3g0120311 32.927 164 103 4 251 410 11 171 2.48e-17 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154540 AT2G38670.1 84.987 373 55 1 50 422 50 421 0.0 667
Msa1154540 AT2G32260.1 39.161 143 78 3 53 190 33 171 1.56e-27 112
Msa1154540 AT2G32260.1 34.969 163 99 4 250 408 28 187 3.80e-18 85.5
Msa1154540 AT2G32260.2 39.450 109 60 2 84 190 18 122 3.64e-18 84.7
Msa1154540 AT2G32260.2 32.800 125 81 2 284 408 17 138 1.56e-11 65.1

Find 136 sgRNAs with CRISPR-Local

Find 543 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAAGGACTATCTAAAATT+TGG 0.214901 7_4:+42002518 None:intergenic
AAAACCGATTCGTGTTTATA+TGG 0.236649 7_4:-42008164 Msa1154540:CDS
TGATGAAATTATTGCTAATA+AGG 0.259012 7_4:-42008047 Msa1154540:CDS
TATTCATCTTCTGGGCCATT+TGG 0.267914 7_4:-42008220 Msa1154540:CDS
AATTGAACCTTTCATGTAAA+GGG 0.279295 7_4:+42008011 None:intergenic
AACATCTCATTAGTTGTTCA+TGG 0.281650 7_4:-42002730 Msa1154540:CDS
TCATCGGTGAATGAACAAAA+TGG 0.285598 7_4:-42008329 Msa1154540:exon
ATAGATAAGATAGATAAATA+AGG 0.329188 7_4:+42000379 None:intergenic
TAACAACTACTACAATAATT+AGG 0.336813 7_4:-42002492 Msa1154540:CDS
TGCTTATGCTCATGCCAAAA+AGG 0.344791 7_4:-42006930 Msa1154540:CDS
CTTCTGGGCCATTTGGGTTG+TGG 0.345993 7_4:-42008213 Msa1154540:CDS
GTAATGGCATATGGAGCTTC+AGG 0.353572 7_4:+42007043 None:intergenic
ATCGTTGGTGTATCAGTATT+AGG 0.355171 7_4:-42008247 Msa1154540:CDS
TTGGAAGATGCCCAAGCTAA+TGG 0.360375 7_4:+42002537 None:intergenic
ATTCATCTTCTGGGCCATTT+GGG 0.367495 7_4:-42008219 Msa1154540:CDS
ACTGATTCATGTCTGTCATT+TGG 0.368297 7_4:-42000444 Msa1154540:exon
AAGCTAATGGGAACGGCATA+TGG 0.372204 7_4:+42002550 None:intergenic
CTTTCATGTAAAGGGGTAAC+AGG 0.373536 7_4:+42008019 None:intergenic
AATGGGGAGGAATAAGAAAA+AGG 0.380455 7_4:+42008443 None:intergenic
AATATAGATTACATTATTCA+TGG 0.380755 7_4:-42006986 Msa1154540:CDS
CTTGGTGATCAATTGATTGT+TGG 0.388238 7_4:-42008082 Msa1154540:CDS
GTGAAAAGAAGCAAAATATT+CGG 0.391402 7_4:+42008381 None:intergenic
TATAGATCCTGAGGCTTGCC+AGG 0.404602 7_4:-42003974 Msa1154540:intron
TTGGCTTTGCAGTGCAACTA+GGG 0.405701 7_4:-42003349 Msa1154540:intron
GTAGTAGTTGTTATATCTAA+AGG 0.412707 7_4:+42002502 None:intergenic
AAATTGAACCTTTCATGTAA+AGG 0.427115 7_4:+42008010 None:intergenic
ATGGGAAGTGTCCAAGGATA+TGG 0.427824 7_4:-42003238 Msa1154540:intron
TTGCGTCAAGCTCGTGCTCT+TGG 0.428384 7_4:-42008100 Msa1154540:CDS
CATCGGTGAATGAACAAAAT+GGG 0.428841 7_4:-42008328 Msa1154540:exon
GAGAGCAAGACTCACGTGTC+TGG 0.432624 7_4:-42000469 Msa1154540:CDS
GCACGGATTGTATATATAGA+TGG 0.433231 7_4:-42005119 Msa1154540:CDS
TTTGGCTTTGCAGTGCAACT+AGG 0.439120 7_4:-42003350 Msa1154540:intron
TGGAAGATGCCCAAGCTAAT+GGG 0.439923 7_4:+42002538 None:intergenic
AATTGAATTGAATTGATGAA+TGG 0.442664 7_4:+42008425 None:intergenic
ACGTTTGCAACCTGACTGTC+TGG 0.445139 7_4:+42003913 None:intergenic
CATTTGGAGACATAAACATT+GGG 0.446540 7_4:-42000428 Msa1154540:three_prime_UTR
TTCAGCCATGAGCACGAGTT+AGG 0.448347 7_4:-42000304 Msa1154540:three_prime_UTR
ATATATACAATCCGTGCATC+AGG 0.448842 7_4:+42005125 None:intergenic
CACGATCCCTGGCAAGCCTC+AGG 0.449144 7_4:+42003967 None:intergenic
CCGATTCGTGTTTATATGGA+TGG 0.449331 7_4:-42008160 Msa1154540:CDS
AAGAAAATCTCCACGATCCC+TGG 0.449604 7_4:+42003956 None:intergenic
TGCTTGCTGTTCCAGAGTCC+AGG 0.450621 7_4:-42005149 Msa1154540:intron
AATTCCTCAGTAATGGCATA+TGG 0.452121 7_4:+42007034 None:intergenic
CTTCATGAATTCCTCAGTAA+TGG 0.452344 7_4:+42007027 None:intergenic
GATGAAATTATTGCTAATAA+GGG 0.453969 7_4:-42008046 Msa1154540:CDS
TCAACAATAATAACCTGAAA+AGG 0.456418 7_4:-42008488 Msa1154540:five_prime_UTR
TATGTGGATGAGGTTATAAT+TGG 0.457136 7_4:-42003267 Msa1154540:CDS
AGAATTGTTCAGTTCTCAAA+CGG 0.463855 7_4:-42006482 Msa1154540:CDS
TTATGGTGAATGCTGTGAAA+TGG 0.466073 7_4:-42007081 Msa1154540:CDS
CACTTAGACTTCTTTCATGA+AGG 0.468250 7_4:+42003304 None:intergenic
ATTGAATTGAATTGATGAAT+GGG 0.473853 7_4:+42008426 None:intergenic
TATGCCGTTCCCATTAGCTT+GGG 0.479975 7_4:-42002547 Msa1154540:CDS
CTGTTACCCCTTTACATGAA+AGG 0.486145 7_4:-42008018 Msa1154540:intron
ACAATCCGTGCATCAGGTCC+TGG 0.490558 7_4:+42005131 None:intergenic
GTTTCCAGCACTGATATTGT+TGG 0.491631 7_4:-42006872 Msa1154540:intron
AACAACGATGTCTGTATCAA+TGG 0.491664 7_4:-42008534 Msa1154540:five_prime_UTR
TATGGTGAATGCTGTGAAAT+GGG 0.494368 7_4:-42007080 Msa1154540:CDS
TGCGCTTTATCTGTTTATAA+CGG 0.494682 7_4:+42006903 None:intergenic
AATTAGACTGACCATATCCT+TGG 0.497284 7_4:+42003227 None:intergenic
GCAGAAACGCAATGAGAAGA+AGG 0.498107 7_4:-42000515 Msa1154540:intron
TACACACGGACCAGACAGTC+AGG 0.503363 7_4:-42003923 Msa1154540:intron
TCTTTCATGAAGGCTCATGA+TGG 0.505520 7_4:+42003314 None:intergenic
ATATAGATTACATTATTCAT+GGG 0.507921 7_4:-42006985 Msa1154540:CDS
CCATCCATATAAACACGAAT+CGG 0.508010 7_4:+42008160 None:intergenic
TGCTTCTCTGTGTAAGAGAA+AGG 0.508525 7_4:-42006637 Msa1154540:CDS
TGTGTGTGACAGGTTGATTA+TGG 0.508667 7_4:-42007098 Msa1154540:intron
AAGACAGTTCAGCAATGGCC+GGG 0.509013 7_4:-42006579 Msa1154540:CDS
GAATTGTTCAGTTCTCAAAC+GGG 0.509341 7_4:-42006481 Msa1154540:CDS
ATATGCCGTTCCCATTAGCT+TGG 0.515291 7_4:-42002548 Msa1154540:CDS
TCATTTGGAGACATAAACAT+TGG 0.515865 7_4:-42000429 Msa1154540:three_prime_UTR
ATCAAATCACGAGGCATACC+AGG 0.519393 7_4:-42002461 Msa1154540:intron
CTTTCATGAAGGCTCATGAT+GGG 0.522971 7_4:+42003315 None:intergenic
AAAGACAGTTCAGCAATGGC+CGG 0.523971 7_4:-42006580 Msa1154540:CDS
CTGACCAACAATATCAGTGC+TGG 0.528820 7_4:+42006868 None:intergenic
GCATAAGCATCAGTTCCATC+AGG 0.530923 7_4:+42006944 None:intergenic
ACGTTTATTCCCTTCGAATG+AGG 0.532059 7_4:-42008360 Msa1154540:five_prime_UTR
ATAAGGAGTGTGTGAAATCC+TGG 0.533627 7_4:+42000396 None:intergenic
CTGAGGCTTGCCAGGGATCG+TGG 0.539877 7_4:-42003966 Msa1154540:CDS
TTTAATAAATTATAAATCAG+AGG 0.548322 7_4:+42000267 None:intergenic
CATACGATGGGCTGCCTGTG+TGG 0.550562 7_4:-42008569 None:intergenic
TGAACAATTCTACGAGATGT+AGG 0.551872 7_4:+42006494 None:intergenic
GGTTATAATTGGTGCACCAT+GGG 0.552103 7_4:-42003256 Msa1154540:CDS
AATCTAATGCGGCGGTGAAG+TGG 0.557630 7_4:-42008285 Msa1154540:CDS
GTGGTCGGAGTTATCATCGT+TGG 0.560954 7_4:-42008262 Msa1154540:CDS
CGAGGCCTAACTCGTGCTCA+TGG 0.561628 7_4:+42000299 None:intergenic
GCGGCGGTGAAGTGGGTGGT+CGG 0.566706 7_4:-42008277 Msa1154540:CDS
ATCTAATGCGGCGGTGAAGT+GGG 0.571718 7_4:-42008284 Msa1154540:CDS
ATCGGTGAATGAACAAAATG+GGG 0.578092 7_4:-42008327 Msa1154540:exon
TGCACCATGGGAAGTGTCCA+AGG 0.578093 7_4:-42003244 Msa1154540:CDS
TGCTGTGAAATGGGTTGATG+AGG 0.579715 7_4:-42007071 Msa1154540:CDS
AGGTTATAATTGGTGCACCA+TGG 0.581761 7_4:-42003257 Msa1154540:CDS
TTACAAAGACAGTTCAGCAA+TGG 0.583914 7_4:-42006584 Msa1154540:CDS
TGGCTTTGCAGTGCAACTAG+GGG 0.586130 7_4:-42003348 Msa1154540:intron
GATCCTTGTGTTCTACCTGA+TGG 0.587679 7_4:-42006959 Msa1154540:CDS
ATTGAACCTTTCATGTAAAG+GGG 0.588992 7_4:+42008012 None:intergenic
GACGGTGGTGTTGTTGCTAG+TGG 0.591924 7_4:-42006539 Msa1154540:CDS
GATGCCCAAGCTAATGGGAA+CGG 0.592555 7_4:+42002543 None:intergenic
CTTTCATGCTGGACATGTAG+AGG 0.593297 7_4:-42005084 Msa1154540:intron
AGACAGTTCAGCAATGGCCG+GGG 0.593488 7_4:-42006578 Msa1154540:CDS
AAACAGATAAAGCGCACGGA+AGG 0.598970 7_4:-42006896 Msa1154540:CDS
CAGAAACGCAATGAGAAGAA+GGG 0.603423 7_4:-42000514 Msa1154540:CDS
AGAAGAATGATTATGAGTGT+CGG 0.605267 7_4:+42006607 None:intergenic
TTGAATTGAATTGATGAATG+GGG 0.607933 7_4:+42008427 None:intergenic
TTGTTCAGTTCTCAAACGGG+AGG 0.609678 7_4:-42006478 Msa1154540:CDS
CAACTACTACAATAATTAGG+AGG 0.612150 7_4:-42002489 Msa1154540:CDS
ATATCCTTGGACACTTCCCA+TGG 0.613148 7_4:+42003240 None:intergenic
TATAGATTACATTATTCATG+GGG 0.619764 7_4:-42006984 Msa1154540:CDS
ATTTGGAGACATAAACATTG+GGG 0.620339 7_4:-42000427 Msa1154540:three_prime_UTR
AGCATGTCGCTATGTGGATG+AGG 0.623388 7_4:-42003277 Msa1154540:CDS
ATAGATCCTGAGGCTTGCCA+GGG 0.626208 7_4:-42003973 Msa1154540:intron
TCTTCTTGTTGGAATACACA+CGG 0.626308 7_4:-42003937 Msa1154540:CDS
AGAGTCCAGGACCTGATGCA+CGG 0.628567 7_4:-42005136 Msa1154540:CDS
TGTGCTAGCATGTCGCTATG+TGG 0.639131 7_4:-42003283 Msa1154540:CDS
TTGGAGACATAAACATTGGG+GGG 0.641280 7_4:-42000425 Msa1154540:three_prime_UTR
CTTCAAACTTCTGCTGACCC+CGG 0.641941 7_4:+42006561 None:intergenic
GTTCCATCAGGTAGAACACA+AGG 0.643125 7_4:+42006956 None:intergenic
TGTTCAGTTCTCAAACGGGA+GGG 0.645197 7_4:-42006477 Msa1154540:intron
AATTGAATTGATGAATGGGG+AGG 0.650249 7_4:+42008430 None:intergenic
GGTCAGCAGAAGTTTGAAGA+CGG 0.660781 7_4:-42006557 Msa1154540:CDS
CAGTGTTGAATCTAATGCGG+CGG 0.663209 7_4:-42008293 Msa1154540:CDS
GAATGAGGAAGAAAACTCAT+CGG 0.665554 7_4:-42008345 Msa1154540:five_prime_UTR
AGGCAGAAAATGAGATACAC+GGG 0.667471 7_4:+42006514 None:intergenic
TAGGCAGAAAATGAGATACA+CGG 0.668725 7_4:+42006513 None:intergenic
TAATGCGGCGGTGAAGTGGG+TGG 0.671113 7_4:-42008281 Msa1154540:CDS
TTATAAACAGATAAAGCGCA+CGG 0.674873 7_4:-42006900 Msa1154540:CDS
TTTGGAGACATAAACATTGG+GGG 0.675348 7_4:-42000426 Msa1154540:three_prime_UTR
CAGCAGAAGTTTGAAGACGG+TGG 0.675930 7_4:-42006554 Msa1154540:CDS
TGAGCACGAGTTAGGCCTCG+TGG 0.677216 7_4:-42000296 Msa1154540:three_prime_UTR
CGGTGAATGAACAAAATGGG+GGG 0.680827 7_4:-42008325 Msa1154540:exon
TCATGTAAAGGGGTAACAGG+AGG 0.682525 7_4:+42008022 None:intergenic
TCGGTGAATGAACAAAATGG+GGG 0.684672 7_4:-42008326 Msa1154540:exon
TAGCAGTGTTGAATCTAATG+CGG 0.691391 7_4:-42008296 Msa1154540:CDS
AGCTCCATATGCCATTACTG+AGG 0.698360 7_4:-42007038 Msa1154540:CDS
GAGGATTGTATCAAATCACG+AGG 0.725632 7_4:-42002470 Msa1154540:CDS
TTGAGACATACAGACCACAC+AGG 0.735120 7_4:+42008555 None:intergenic
AGGAGTGTGTGAAATCCTGG+TGG 0.795352 7_4:+42000399 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAACAAAAATATATTTTT+AGG + chr7_4:42003620-42003639 None:intergenic 10.0%
!! ATATTATATTTCAACATAAA+AGG + chr7_4:42004733-42004752 None:intergenic 10.0%
!! AATATTAATAATTAAAGCAA+AGG - chr7_4:42005493-42005512 Msa1154540:intron 10.0%
!! ATTCTAATTCTAATAAAAAT+AGG - chr7_4:42006458-42006477 Msa1154540:intron 10.0%
!!! CATAAAGATTTTAATTTAAA+TGG - chr7_4:42006712-42006731 Msa1154540:intron 10.0%
!!! ATGCTAATATATATTATTTT+TGG - chr7_4:42007084-42007103 Msa1154540:CDS 10.0%
!!! ATATATATTATTTTTGGATT+TGG - chr7_4:42007090-42007109 Msa1154540:intron 10.0%
!! TTTAATAAATTATAAATCAG+AGG + chr7_4:42008334-42008353 None:intergenic 10.0%
!! AAAAAACAATAATACTAATA+CGG + chr7_4:42008502-42008521 None:intergenic 10.0%
!!! ATTTTTTTTATTTCCTTTTC+AGG + chr7_4:42000126-42000145 None:intergenic 15.0%
!!! TATTTTTAATTTACCATTTC+TGG - chr7_4:42000638-42000657 Msa1154540:intron 15.0%
!! TTGTTTAAATGAATTTATGA+TGG - chr7_4:42000763-42000782 Msa1154540:intron 15.0%
!! AATATAGATTACATTATTCA+TGG - chr7_4:42001612-42001631 Msa1154540:intron 15.0%
!! ATATAGATTACATTATTCAT+GGG - chr7_4:42001613-42001632 Msa1154540:intron 15.0%
!!! TTACGTTTATTTTTTTTAAC+AGG - chr7_4:42002476-42002495 Msa1154540:CDS 15.0%
!! AAATACACATAATTCTAATT+TGG + chr7_4:42003394-42003413 None:intergenic 15.0%
!!! ATATATTTTTAGGTAATGAT+CGG + chr7_4:42003610-42003629 None:intergenic 15.0%
!! GAAATATAATATATTGTACT+TGG - chr7_4:42004741-42004760 Msa1154540:intron 15.0%
!!! TTTTTATTTTACATTAGAGT+TGG + chr7_4:42004941-42004960 None:intergenic 15.0%
!!! TTATTTGTTATGATATGTAA+TGG - chr7_4:42005469-42005488 Msa1154540:intron 15.0%
!! TAAAATAAAAACAAAACAGT+AGG + chr7_4:42007638-42007657 None:intergenic 15.0%
!! ATAGATAAGATAGATAAATA+AGG + chr7_4:42008222-42008241 None:intergenic 15.0%
!!! GTTTTTTATATTTTTGTTTG+TGG - chr7_4:42008254-42008273 Msa1154540:CDS 15.0%
!! TAAAAACTTACATATTCATA+AGG + chr7_4:42008367-42008386 None:intergenic 15.0%
!!! TTTTTATCAGATAAAAATTG+TGG - chr7_4:42008381-42008400 Msa1154540:five_prime_UTR 15.0%
!! AGAGTGAAAAAAAATAGAAA+TGG + chr7_4:42000091-42000110 None:intergenic 20.0%
!! ATTGAATTGAATTGATGAAT+GGG + chr7_4:42000175-42000194 None:intergenic 20.0%
!! AATTGAATTGAATTGATGAA+TGG + chr7_4:42000176-42000195 None:intergenic 20.0%
!! TGATGAAATTATTGCTAATA+AGG - chr7_4:42000551-42000570 Msa1154540:intron 20.0%
!! GATGAAATTATTGCTAATAA+GGG - chr7_4:42000552-42000571 Msa1154540:intron 20.0%
!! TTAAATTGATTGTACTTACA+TGG - chr7_4:42000728-42000747 Msa1154540:intron 20.0%
!!! AACTTATTTTATTCTAGTGT+TGG + chr7_4:42000946-42000965 None:intergenic 20.0%
!! CTAGAATAAAATAAGTTTAG+CGG - chr7_4:42000949-42000968 Msa1154540:intron 20.0%
!!! TCTTTCTTAATAGTTTTTCT+AGG + chr7_4:42001185-42001204 None:intergenic 20.0%
!! TTCTTTCATAAACCATATTT+AGG + chr7_4:42001229-42001248 None:intergenic 20.0%
!!! TTTATTTTGTGATTTTGATG+TGG - chr7_4:42001427-42001446 Msa1154540:intron 20.0%
!!! GTTATTTTGATTTGTTTGTT+TGG - chr7_4:42001449-42001468 Msa1154540:intron 20.0%
!!! TTTTTCTGAGATTTTGATTA+TGG - chr7_4:42001474-42001493 Msa1154540:intron 20.0%
!! TATAGATTACATTATTCATG+GGG - chr7_4:42001614-42001633 Msa1154540:intron 20.0%
!! TTTCATAAATTATTGCATAG+AGG - chr7_4:42001855-42001874 Msa1154540:intron 20.0%
!!! TTTATGAACTTGTTATTTAC+AGG - chr7_4:42002388-42002407 Msa1154540:intron 20.0%
!!! TTATGAACTTGTTATTTACA+GGG - chr7_4:42002389-42002408 Msa1154540:intron 20.0%
!!! CTAAATTTTTCTATTTCCTA+AGG + chr7_4:42002455-42002474 None:intergenic 20.0%
!!! CAATAGAAAATAAAGTGTTT+TGG - chr7_4:42003807-42003826 Msa1154540:intron 20.0%
!!! TGATCATTTTAATTCAAACA+CGG - chr7_4:42004034-42004053 Msa1154540:intron 20.0%
!!! ATAAATAATTGGGTCTTATT+TGG + chr7_4:42004390-42004409 None:intergenic 20.0%
!!! TAGAATAATTTGGAACTAAA+GGG + chr7_4:42004447-42004466 None:intergenic 20.0%
!!! ATAGAATAATTTGGAACTAA+AGG + chr7_4:42004448-42004467 None:intergenic 20.0%
!!! TTTTTCCTCATAGAATAATT+TGG + chr7_4:42004457-42004476 None:intergenic 20.0%
!!! AGAGTTTCTTTTAAAAGAAA+AGG + chr7_4:42004484-42004503 None:intergenic 20.0%
!! GTACAATAAGGAAAAATAAA+AGG + chr7_4:42004514-42004533 None:intergenic 20.0%
!! TATATTTCAACATAAAAGGT+AGG + chr7_4:42004729-42004748 None:intergenic 20.0%
!! AAGTTTGATATGGTAAAAAA+TGG + chr7_4:42004905-42004924 None:intergenic 20.0%
!!! TGACAATGTTCTATTTTTTT+TGG - chr7_4:42005230-42005249 Msa1154540:intron 20.0%
!! AATAATCTATCCAACTATTT+GGG + chr7_4:42005649-42005668 None:intergenic 20.0%
!! AAATTGTCACAAAATCTTAT+TGG + chr7_4:42005715-42005734 None:intergenic 20.0%
!! AATGTCAATAACAACTAATA+AGG + chr7_4:42006003-42006022 None:intergenic 20.0%
!! TAACAACTACTACAATAATT+AGG - chr7_4:42006106-42006125 Msa1154540:intron 20.0%
!! AAATAGACATGTATTTCATA+CGG - chr7_4:42006387-42006406 Msa1154540:intron 20.0%
!! TCAATTAAAAAAAGAAGAAG+CGG + chr7_4:42006552-42006571 None:intergenic 20.0%
!! TAATACAGTTTAGTTAACTA+CGG - chr7_4:42006849-42006868 Msa1154540:intron 20.0%
!! TATGAAGTCTTCATATTAAA+TGG - chr7_4:42007402-42007421 Msa1154540:intron 20.0%
!!! GTTTGACAGTTTTTAAATAA+AGG - chr7_4:42007733-42007752 Msa1154540:intron 20.0%
!!! AGATTCTTTTAAGAGAAAAT+GGG + chr7_4:42007823-42007842 None:intergenic 20.0%
!!! AAGATTCTTTTAAGAGAAAA+TGG + chr7_4:42007824-42007843 None:intergenic 20.0%
! TCAACAATAATAACCTGAAA+AGG - chr7_4:42000110-42000129 Msa1154540:three_prime_UTR 25.0%
! TTGAATTGAATTGATGAATG+GGG + chr7_4:42000174-42000193 None:intergenic 25.0%
! GTGAAAAGAAGCAAAATATT+CGG + chr7_4:42000220-42000239 None:intergenic 25.0%
!! TTAGGTTTTTATTCATCTTC+TGG - chr7_4:42000369-42000388 Msa1154540:three_prime_UTR 25.0%
!! TAGGTTTTTATTCATCTTCT+GGG - chr7_4:42000370-42000389 Msa1154540:three_prime_UTR 25.0%
!!! TGTTTTGATATGATGCATTA+TGG - chr7_4:42000462-42000481 Msa1154540:CDS 25.0%
! AATTGAACCTTTCATGTAAA+GGG + chr7_4:42000590-42000609 None:intergenic 25.0%
! AAATTGAACCTTTCATGTAA+AGG + chr7_4:42000591-42000610 None:intergenic 25.0%
! AACACCTATAGTAGAATATA+TGG - chr7_4:42001052-42001071 Msa1154540:intron 25.0%
!! TAGAATATATGGTGGAAAAT+AGG - chr7_4:42001063-42001082 Msa1154540:intron 25.0%
! TGAAGTGACATTTCTTTATT+TGG - chr7_4:42001790-42001809 Msa1154540:intron 25.0%
!! TATTTGGTATTTGTGCTATT+CGG - chr7_4:42001806-42001825 Msa1154540:intron 25.0%
! TATACAAAATATTCATGTGC+AGG - chr7_4:42001933-42001952 Msa1154540:intron 25.0%
! ATGCAAAGCAAACATAATTT+AGG + chr7_4:42002211-42002230 None:intergenic 25.0%
! GTCAATTGGAATGATTATTT+GGG - chr7_4:42002282-42002301 Msa1154540:intron 25.0%
! ATGAATTTCTCAATGGTAAT+TGG + chr7_4:42002314-42002333 None:intergenic 25.0%
! AGACATAATGAATTTCTCAA+TGG + chr7_4:42002321-42002340 None:intergenic 25.0%
!!! AAATGATAATAGGTGTTGAT+TGG - chr7_4:42002612-42002631 Msa1154540:intron 25.0%
!!! ATATTGTTGGTAGTAGTAAA+TGG - chr7_4:42002635-42002654 Msa1154540:intron 25.0%
! TGTAGTTAACTAATACAGTA+TGG - chr7_4:42002719-42002738 Msa1154540:CDS 25.0%
! GGAATCAGGTTATAAAAATT+TGG - chr7_4:42002740-42002759 Msa1154540:CDS 25.0%
!! CTAAGAAATGAATTTTCAGA+GGG + chr7_4:42002824-42002843 None:intergenic 25.0%
! TGCATCAGATTATTAGAATT+AGG - chr7_4:42003023-42003042 Msa1154540:intron 25.0%
! AATTAGGAAAACATCAGAAT+GGG - chr7_4:42003039-42003058 Msa1154540:intron 25.0%
!! TTAAGAAATGAATTTCTGGA+GGG + chr7_4:42003106-42003125 None:intergenic 25.0%
! ATGCTTAAGAAATGAATTTC+TGG + chr7_4:42003110-42003129 None:intergenic 25.0%
!! TCTTAAGCATATCTTTTGTT+TGG - chr7_4:42003120-42003139 Msa1154540:intron 25.0%
!!! CTTAAGCATATCTTTTGTTT+GGG - chr7_4:42003121-42003140 Msa1154540:intron 25.0%
! CAATATATTTGTGTATGCAA+TGG + chr7_4:42003335-42003354 None:intergenic 25.0%
! TACTATCATCATGTTAATGA+GGG + chr7_4:42003647-42003666 None:intergenic 25.0%
! TTACTATCATCATGTTAATG+AGG + chr7_4:42003648-42003667 None:intergenic 25.0%
! TTATTGAATAAGAACACGAT+CGG + chr7_4:42003755-42003774 None:intergenic 25.0%
!!! GATCATTTTAATTCAAACAC+GGG - chr7_4:42004035-42004054 Msa1154540:intron 25.0%
! AACACCAGCAATAAATAATT+GGG + chr7_4:42004400-42004419 None:intergenic 25.0%
! TAACACCAGCAATAAATAAT+TGG + chr7_4:42004401-42004420 None:intergenic 25.0%
! TAGTTCCAAATTATTCTATG+AGG - chr7_4:42004449-42004468 Msa1154540:intron 25.0%
!! TACCATCAGATTTGTTTAAA+TGG - chr7_4:42004567-42004586 Msa1154540:intron 25.0%
! ATCCATTTAAACAAATCTGA+TGG + chr7_4:42004572-42004591 None:intergenic 25.0%
!!! AATGAAGAACAGTTGATAAA+AGG + chr7_4:42004601-42004620 None:intergenic 25.0%
!! TTCATTTTATATAGATCCTG+AGG - chr7_4:42004615-42004634 Msa1154540:intron 25.0%
!! GATAACTTGTATCGTAATTA+TGG - chr7_4:42004972-42004991 Msa1154540:intron 25.0%
! ATAGATAGATGCTCATATTA+AGG + chr7_4:42005181-42005200 None:intergenic 25.0%
! TAATGTTTATATAGTGCACA+AGG - chr7_4:42005207-42005226 Msa1154540:intron 25.0%
! ATAATCTATCCAACTATTTG+GGG + chr7_4:42005648-42005667 None:intergenic 25.0%
! CAATAATCTATCCAACTATT+TGG + chr7_4:42005650-42005669 None:intergenic 25.0%
! ATTAATGAATTATTGAGTCG+TGG - chr7_4:42005791-42005810 Msa1154540:intron 25.0%
!! ATTGACATTAATTTTCGTAC+AGG - chr7_4:42006014-42006033 Msa1154540:intron 25.0%
!! CTAAAGGACTATCTAAAATT+TGG + chr7_4:42006083-42006102 None:intergenic 25.0%
! GTAGTAGTTGTTATATCTAA+AGG + chr7_4:42006099-42006118 None:intergenic 25.0%
! CTAACCAAACAAAAATGAAA+AGG + chr7_4:42006173-42006192 None:intergenic 25.0%
!! TTAGTTCATTTTCATACAGT+TGG - chr7_4:42006189-42006208 Msa1154540:intron 25.0%
! AATCATTTATTCTCTATCTC+CGG - chr7_4:42006350-42006369 Msa1154540:intron 25.0%
!! CATGTCTATTTAGTGTTTTT+GGG + chr7_4:42006378-42006397 None:intergenic 25.0%
!! ACATGTCTATTTAGTGTTTT+TGG + chr7_4:42006379-42006398 None:intergenic 25.0%
! AATATATATGATCCATCTAG+TGG - chr7_4:42006771-42006790 Msa1154540:intron 25.0%
! ATATATATGATCCATCTAGT+GGG - chr7_4:42006772-42006791 Msa1154540:intron 25.0%
! ACTGTATTAACACAATTTAG+CGG + chr7_4:42006838-42006857 None:intergenic 25.0%
! TAGAAAAGTCAGAAAATCAA+TGG - chr7_4:42007132-42007151 Msa1154540:intron 25.0%
!!! ATTATTGATTTCTTCATCGA+TGG - chr7_4:42007205-42007224 Msa1154540:intron 25.0%
! AAGTCTTCATATTAAATGGA+AGG - chr7_4:42007406-42007425 Msa1154540:intron 25.0%
!!! AAACAGTAGGTTTTGTAATT+AGG + chr7_4:42007625-42007644 None:intergenic 25.0%
!!! TGTATTATTGCTTTTTCGAA+AGG - chr7_4:42008550-42008569 Msa1154540:five_prime_UTR 25.0%
!!! ATATTCGGTTTTGTTTGGAT+TGG + chr7_4:42000205-42000224 None:intergenic 30.0%
!!! GCAAAATATTCGGTTTTGTT+TGG + chr7_4:42000210-42000229 None:intergenic 30.0%
!! AAAACCGATTCGTGTTTATA+TGG - chr7_4:42000434-42000453 Msa1154540:three_prime_UTR 30.0%
ATTGAACCTTTCATGTAAAG+GGG + chr7_4:42000589-42000608 None:intergenic 30.0%
! AACAGCTTTTTATCCAGAAA+TGG + chr7_4:42000654-42000673 None:intergenic 30.0%
TTGTACTTACATGGTATGTA+TGG - chr7_4:42000737-42000756 Msa1154540:intron 30.0%
ATCGTCAATCTTATAGTTGT+AGG + chr7_4:42000890-42000909 None:intergenic 30.0%
ATAAGATTGACGATGTTGTA+TGG - chr7_4:42000896-42000915 Msa1154540:intron 30.0%
AGATGTGATAGGATTAGAAA+TGG - chr7_4:42001007-42001026 Msa1154540:intron 30.0%
ACCTATAGTAGAATATATGG+TGG - chr7_4:42001055-42001074 Msa1154540:intron 30.0%
TCCACCATATATTCTACTAT+AGG + chr7_4:42001059-42001078 None:intergenic 30.0%
GATTTGTAGATTCTGTACTA+AGG - chr7_4:42001111-42001130 Msa1154540:intron 30.0%
TAATGAGCTGAACCTAAATA+TGG - chr7_4:42001214-42001233 Msa1154540:intron 30.0%
TGGCTACATGAATCAAATTA+CGG + chr7_4:42001259-42001278 None:intergenic 30.0%
AGTTGAACTCATTTCTGATT+TGG - chr7_4:42001395-42001414 Msa1154540:intron 30.0%
TGCGCTTTATCTGTTTATAA+CGG + chr7_4:42001698-42001717 None:intergenic 30.0%
TTATAAACAGATAAAGCGCA+CGG - chr7_4:42001698-42001717 Msa1154540:intron 30.0%
AGAAGAATGATTATGAGTGT+CGG + chr7_4:42001994-42002013 None:intergenic 30.0%
AGAATTGTTCAGTTCTCAAA+CGG - chr7_4:42002116-42002135 Msa1154540:intron 30.0%
GGTCAATTGGAATGATTATT+TGG - chr7_4:42002281-42002300 Msa1154540:intron 30.0%
AACAAGTTCATAAAACAAGC+CGG + chr7_4:42002382-42002401 None:intergenic 30.0%
!! AGTTGGTAGCAAATGATAAT+AGG - chr7_4:42002602-42002621 Msa1154540:intron 30.0%
TTTCAAAACAAACTCTACCT+TGG + chr7_4:42002685-42002704 None:intergenic 30.0%
!!! AAGGTAGAGTTTGTTTTGAA+AGG - chr7_4:42002684-42002703 Msa1154540:intron 30.0%
AACTAATACAGTATGGAATC+AGG - chr7_4:42002726-42002745 Msa1154540:CDS 30.0%
AAATTTGGAAAACAGCAGAA+TGG - chr7_4:42002755-42002774 Msa1154540:intron 30.0%
! CCTAAGAAATGAATTTTCAG+AGG + chr7_4:42002825-42002844 None:intergenic 30.0%
! CCTCTGAAAATTCATTTCTT+AGG - chr7_4:42002822-42002841 Msa1154540:intron 30.0%
GCTCAAACATATATGCTATA+GGG - chr7_4:42002945-42002964 Msa1154540:intron 30.0%
AACATATATGCTATAGGGTT+TGG - chr7_4:42002950-42002969 Msa1154540:intron 30.0%
ACATATATGCTATAGGGTTT+GGG - chr7_4:42002951-42002970 Msa1154540:intron 30.0%
GAATTAGGAAAACATCAGAA+TGG - chr7_4:42003038-42003057 Msa1154540:intron 30.0%
ATTAGGAAAACATCAGAATG+GGG - chr7_4:42003040-42003059 Msa1154540:intron 30.0%
! CTTAAGAAATGAATTTCTGG+AGG + chr7_4:42003107-42003126 None:intergenic 30.0%
ACTGCTTTAACAATTACCAT+AGG + chr7_4:42003178-42003197 None:intergenic 30.0%
! CTACTGTGTAGTTCTTTTTA+CGG + chr7_4:42003216-42003235 None:intergenic 30.0%
CAATCACAGGTGTAAAAAAA+AGG + chr7_4:42003286-42003305 None:intergenic 30.0%
GGACAGAACAAAAATACTAT+AGG + chr7_4:42003589-42003608 None:intergenic 30.0%
TGATCAGAATCACAATTTCA+GGG + chr7_4:42004020-42004039 None:intergenic 30.0%
ATGATCAGAATCACAATTTC+AGG + chr7_4:42004021-42004040 None:intergenic 30.0%
ATAACCACTTTAAGCAACTT+TGG + chr7_4:42004070-42004089 None:intergenic 30.0%
! TTGCTTAAAGTGGTTATTTC+AGG - chr7_4:42004073-42004092 Msa1154540:intron 30.0%
! TTAAAGTGGTTATTTCAGGA+AGG - chr7_4:42004077-42004096 Msa1154540:intron 30.0%
TAAATTGGAAGGACACAAAT+AGG - chr7_4:42004123-42004142 Msa1154540:intron 30.0%
! ATAACGGAATTTGAACAAAC+TGG + chr7_4:42004200-42004219 None:intergenic 30.0%
GTTATAGCACTGTAGTATAA+CGG + chr7_4:42004216-42004235 None:intergenic 30.0%
ACAAATCGTTATTGTTCTGT+GGG + chr7_4:42004278-42004297 None:intergenic 30.0%
AACAAATCGTTATTGTTCTG+TGG + chr7_4:42004279-42004298 None:intergenic 30.0%
!! AATTGGGTCTTATTTGGATA+TGG + chr7_4:42004384-42004403 None:intergenic 30.0%
AAGACCCAATTATTTATTGC+TGG - chr7_4:42004393-42004412 Msa1154540:intron 30.0%
AATGACAGTCTAGTACAATA+AGG + chr7_4:42004526-42004545 None:intergenic 30.0%
TCGTTGTTATCAAAAGTGAA+TGG - chr7_4:42004766-42004785 Msa1154540:intron 30.0%
ATCTGCAATGGAATTATTGT+TGG - chr7_4:42004802-42004821 Msa1154540:intron 30.0%
! TCACTCTAAGAAGTTTGATA+TGG + chr7_4:42004915-42004934 None:intergenic 30.0%
! TATCGTAATTATGGAAGCAT+GGG - chr7_4:42004981-42005000 Msa1154540:intron 30.0%
TCACTCTTAATCCTATAAAC+TGG - chr7_4:42005009-42005028 Msa1154540:intron 30.0%
CACTCTTAATCCTATAAACT+GGG - chr7_4:42005010-42005029 Msa1154540:intron 30.0%
ACTCTTAATCCTATAAACTG+GGG - chr7_4:42005011-42005030 Msa1154540:intron 30.0%
GATGCTCATATTAAGGTAAA+TGG + chr7_4:42005174-42005193 None:intergenic 30.0%
TATGTGGATGAGGTTATAAT+TGG - chr7_4:42005331-42005350 Msa1154540:intron 30.0%
TTAAGAAATGTAGCGAAAAC+TGG - chr7_4:42005676-42005695 Msa1154540:intron 30.0%
! AAGATTTTGTGACAATTTGC+TGG - chr7_4:42005717-42005736 Msa1154540:intron 30.0%
!! AATTTGCTGGTTGATTCAAT+CGG - chr7_4:42005730-42005749 Msa1154540:intron 30.0%
AACATCTCATTAGTTGTTCA+TGG - chr7_4:42005868-42005887 Msa1154540:intron 30.0%
!!! AGAGAATACTGATTTTCAGA+AGG - chr7_4:42005900-42005919 Msa1154540:intron 30.0%
CAACTACTACAATAATTAGG+AGG - chr7_4:42006109-42006128 Msa1154540:intron 30.0%
!! CAGACCTTTTCATTTTTGTT+TGG - chr7_4:42006166-42006185 Msa1154540:intron 30.0%
! CACCATATTCAATACAGTTT+TGG - chr7_4:42006320-42006339 Msa1154540:intron 30.0%
AGCCAAAACTGTATTGAATA+TGG + chr7_4:42006325-42006344 None:intergenic 30.0%
ATCATTTATTCTCTATCTCC+GGG - chr7_4:42006351-42006370 Msa1154540:intron 30.0%
!! ATTATCAAGTTGAAGCAAGT+TGG + chr7_4:42006879-42006898 None:intergenic 30.0%
GTCATGATAATACAGAAAGT+GGG + chr7_4:42006995-42007014 None:intergenic 30.0%
AGTCATGATAATACAGAAAG+TGG + chr7_4:42006996-42007015 None:intergenic 30.0%
TGATTGTGGTAAGAATGTAT+AGG - chr7_4:42007032-42007051 Msa1154540:CDS 30.0%
! ACTTTTCTAACTATGCACTT+CGG + chr7_4:42007121-42007140 None:intergenic 30.0%
TCTTCATATTAAATGGAAGG+TGG - chr7_4:42007409-42007428 Msa1154540:intron 30.0%
! AGTGTGGTTTTCTTCTTTAT+TGG - chr7_4:42007485-42007504 Msa1154540:intron 30.0%
! GTGTGGTTTTCTTCTTTATT+GGG - chr7_4:42007486-42007505 Msa1154540:intron 30.0%
! AAGAAGTACAATGGTTGAAA+AGG + chr7_4:42007552-42007571 None:intergenic 30.0%
! TCTCAAGAAAAGAAGTACAA+TGG + chr7_4:42007561-42007580 None:intergenic 30.0%
! ACTTCTTTTCTTGAGAGATT+TGG - chr7_4:42007565-42007584 Msa1154540:intron 30.0%
! TTCTTGAGAGATTTGGTATA+CGG - chr7_4:42007572-42007591 Msa1154540:intron 30.0%
! ATCTTGCAAAAAGGTCTTTT+TGG + chr7_4:42007889-42007908 None:intergenic 30.0%
TCATTTGGAGACATAAACAT+TGG - chr7_4:42008169-42008188 Msa1154540:CDS 30.0%
CATTTGGAGACATAAACATT+GGG - chr7_4:42008170-42008189 Msa1154540:CDS 30.0%
ATTTGGAGACATAAACATTG+GGG - chr7_4:42008171-42008190 Msa1154540:CDS 30.0%
AACAACGATGTCTGTATCAA+TGG - chr7_4:42000064-42000083 Msa1154540:three_prime_UTR 35.0%
AATGGGGAGGAATAAGAAAA+AGG + chr7_4:42000158-42000177 None:intergenic 35.0%
AATTGAATTGATGAATGGGG+AGG + chr7_4:42000171-42000190 None:intergenic 35.0%
! AGTTTTCTTCCTCATTCGAA+GGG + chr7_4:42000250-42000269 None:intergenic 35.0%
GAATGAGGAAGAAAACTCAT+CGG - chr7_4:42000253-42000272 Msa1154540:three_prime_UTR 35.0%
TCATCGGTGAATGAACAAAA+TGG - chr7_4:42000269-42000288 Msa1154540:three_prime_UTR 35.0%
CATCGGTGAATGAACAAAAT+GGG - chr7_4:42000270-42000289 Msa1154540:three_prime_UTR 35.0%
ATCGGTGAATGAACAAAATG+GGG - chr7_4:42000271-42000290 Msa1154540:three_prime_UTR 35.0%
! TAGCAGTGTTGAATCTAATG+CGG - chr7_4:42000302-42000321 Msa1154540:three_prime_UTR 35.0%
ATCGTTGGTGTATCAGTATT+AGG - chr7_4:42000351-42000370 Msa1154540:three_prime_UTR 35.0%
! TTCTTTTTCCACAACCCAAA+TGG + chr7_4:42000396-42000415 None:intergenic 35.0%
!! TTTGGGTTGTGGAAAAAGAA+TGG - chr7_4:42000396-42000415 Msa1154540:three_prime_UTR 35.0%
GGAAAAAGAATGGTAGAAGA+AGG - chr7_4:42000406-42000425 Msa1154540:three_prime_UTR 35.0%
CCATCCATATAAACACGAAT+CGG + chr7_4:42000441-42000460 None:intergenic 35.0%
! CTTGGTGATCAATTGATTGT+TGG - chr7_4:42000516-42000535 Msa1154540:intron 35.0%
ATCATTGAATTCAAGCTCAG+TGG - chr7_4:42000810-42000829 Msa1154540:intron 35.0%
! TTGATATAGTGTTGGATGTG+TGG - chr7_4:42000977-42000996 Msa1154540:intron 35.0%
!! ATTGATTGTGATTTGCTGAC+AGG - chr7_4:42001338-42001357 Msa1154540:intron 35.0%
TTATGGTGAATGCTGTGAAA+TGG - chr7_4:42001517-42001536 Msa1154540:intron 35.0%
TATGGTGAATGCTGTGAAAT+GGG - chr7_4:42001518-42001537 Msa1154540:intron 35.0%
AATTCCTCAGTAATGGCATA+TGG + chr7_4:42001567-42001586 None:intergenic 35.0%
CTTCATGAATTCCTCAGTAA+TGG + chr7_4:42001574-42001593 None:intergenic 35.0%
! CTTTGTTTGTCGTTGTTGTA+TGG - chr7_4:42001829-42001848 Msa1154540:intron 35.0%
TTACAAAGACAGTTCAGCAA+TGG - chr7_4:42002014-42002033 Msa1154540:intron 35.0%
TAGGCAGAAAATGAGATACA+CGG + chr7_4:42002088-42002107 None:intergenic 35.0%
TGAACAATTCTACGAGATGT+AGG + chr7_4:42002107-42002126 None:intergenic 35.0%
GAATTGTTCAGTTCTCAAAC+GGG - chr7_4:42002117-42002136 Msa1154540:intron 35.0%
TCAAGCATCACAAAGATTCA+AGG + chr7_4:42002234-42002253 None:intergenic 35.0%
TATGTTTCACGTCGTGATAT+TGG - chr7_4:42002260-42002279 Msa1154540:intron 35.0%
TGTCTTATGTCCTTGTCAAT+TGG - chr7_4:42002336-42002355 Msa1154540:intron 35.0%
! TCACTTGAGAATTTTTCGTC+CGG - chr7_4:42002360-42002379 Msa1154540:intron 35.0%
!! ACTTGTTATTTACAGGGACT+TGG - chr7_4:42002395-42002414 Msa1154540:intron 35.0%
!! CTTGTTATTTACAGGGACTT+GGG - chr7_4:42002396-42002415 Msa1154540:intron 35.0%
! TTTTCTATTTCCTAAGGCCT+AGG + chr7_4:42002449-42002468 None:intergenic 35.0%
GGTTTAAGCTAAGGGTTAAA+AGG + chr7_4:42002520-42002539 None:intergenic 35.0%
TAGCAACATGGCTAAATATG+GGG + chr7_4:42002562-42002581 None:intergenic 35.0%
CTAGCAACATGGCTAAATAT+GGG + chr7_4:42002563-42002582 None:intergenic 35.0%
ATTGATGTGGGGAATTAAGT+TGG - chr7_4:42002585-42002604 Msa1154540:intron 35.0%
!! AGGTGTTGATTGGATATTGT+TGG - chr7_4:42002622-42002641 Msa1154540:intron 35.0%
GTAGTAAATGGAACGATTCA+AGG - chr7_4:42002647-42002666 Msa1154540:intron 35.0%
CTTAGGTATGTCTGTTTCAT+TGG - chr7_4:42002839-42002858 Msa1154540:intron 35.0%
!! CTAAGCTGCTGATTTGTAAT+AGG - chr7_4:42002862-42002881 Msa1154540:intron 35.0%
! ATTAAGCAACTTGCTTCTAC+TGG - chr7_4:42002885-42002904 Msa1154540:intron 35.0%
! TTAAGCAACTTGCTTCTACT+GGG - chr7_4:42002886-42002905 Msa1154540:intron 35.0%
CGCTCAAACATATATGCTAT+AGG - chr7_4:42002944-42002963 Msa1154540:intron 35.0%
!! CATTTCCTTTTAGTTGCCTA+TGG - chr7_4:42002996-42003015 Msa1154540:intron 35.0%
ATACACCATAGGCAACTAAA+AGG + chr7_4:42003004-42003023 None:intergenic 35.0%
TAATCTGATGCATACACCAT+AGG + chr7_4:42003015-42003034 None:intergenic 35.0%
TTAGGAAAACATCAGAATGG+GGG - chr7_4:42003041-42003060 Msa1154540:intron 35.0%
! AAATGAATTTCTGGAGGGTT+AGG + chr7_4:42003101-42003120 None:intergenic 35.0%
!! ATATCTTTTGTTTGGGTTCG+TGG - chr7_4:42003128-42003147 Msa1154540:intron 35.0%
!! TATCTTTTGTTTGGGTTCGT+GGG - chr7_4:42003129-42003148 Msa1154540:intron 35.0%
AGGTGTAAAAAAAAGGAGAC+TGG + chr7_4:42003279-42003298 None:intergenic 35.0%
AACCATGAAAGTTCAATCAC+AGG + chr7_4:42003299-42003318 None:intergenic 35.0%
! GATTTCTTGCTACTTAGAGA+TGG - chr7_4:42003354-42003373 Msa1154540:intron 35.0%
ATATATACAATCCGTGCATC+AGG + chr7_4:42003476-42003495 None:intergenic 35.0%
! GCACGGATTGTATATATAGA+TGG - chr7_4:42003479-42003498 Msa1154540:intron 35.0%
AGAGATAACAATCTGGCAAA+TGG + chr7_4:42003785-42003804 None:intergenic 35.0%
ATTTGCCAGATTGTTATCTC+TGG - chr7_4:42003784-42003803 Msa1154540:intron 35.0%
TATTGCCAGAGATAACAATC+TGG + chr7_4:42003792-42003811 None:intergenic 35.0%
GGTTATCAGATGAGTTTGTA+AGG - chr7_4:42003828-42003847 Msa1154540:intron 35.0%
TATCAGATGAGTTTGTAAGG+AGG - chr7_4:42003831-42003850 Msa1154540:intron 35.0%
ATCAGATGAGTTTGTAAGGA+GGG - chr7_4:42003832-42003851 Msa1154540:intron 35.0%
GAGGATAAGATGTTCACATT+AGG + chr7_4:42003907-42003926 None:intergenic 35.0%
ACTACCAAAGTTGCTTAAAG+TGG - chr7_4:42004063-42004082 Msa1154540:intron 35.0%
!! AATGGTGTCATGTGGTAAAT+TGG - chr7_4:42004108-42004127 Msa1154540:intron 35.0%
GACAAAGTGTAGTCAAATAG+CGG + chr7_4:42004240-42004259 None:intergenic 35.0%
! TATTGCTGGTGTTAACCTAT+AGG - chr7_4:42004407-42004426 Msa1154540:intron 35.0%
AAATCTGATGGTAACAAGCA+TGG + chr7_4:42004560-42004579 None:intergenic 35.0%
TCTTCTTGTTGGAATACACA+CGG - chr7_4:42004661-42004680 Msa1154540:intron 35.0%
GTATCGTAATTATGGAAGCA+TGG - chr7_4:42004980-42004999 Msa1154540:intron 35.0%
CTCTTAATCCTATAAACTGG+GGG - chr7_4:42005012-42005031 Msa1154540:intron 35.0%
TCTTAATCCTATAAACTGGG+GGG - chr7_4:42005013-42005032 Msa1154540:intron 35.0%
AAGTTTCTTGTCTATCACTC+TGG + chr7_4:42005132-42005151 None:intergenic 35.0%
CACTTAGACTTCTTTCATGA+AGG + chr7_4:42005297-42005316 None:intergenic 35.0%
AATTAGACTGACCATATCCT+TGG + chr7_4:42005374-42005393 None:intergenic 35.0%
!!! ACCACTCTTTTAAGTTGTTC+TGG - chr7_4:42005565-42005584 Msa1154540:intron 35.0%
ACCAGAACAACTTAAAAGAG+TGG + chr7_4:42005569-42005588 None:intergenic 35.0%
!!! TTAGTGCTTTTTCTTGCAAG+AGG - chr7_4:42005943-42005962 Msa1154540:intron 35.0%
!!! TAGTGCTTTTTCTTGCAAGA+GGG - chr7_4:42005944-42005963 Msa1154540:intron 35.0%
TGAAAAGGTCTGAATTTACC+TGG + chr7_4:42006158-42006177 None:intergenic 35.0%
!!! TATTTAGTGTTTTTGGGTCC+CGG + chr7_4:42006372-42006391 None:intergenic 35.0%
ACATGTATTTCATACGGTGT+TGG - chr7_4:42006393-42006412 Msa1154540:intron 35.0%
CTTTGAGTGAAAAAGAGTCT+TGG + chr7_4:42006500-42006519 None:intergenic 35.0%
!! CTTGCTTCAACTTGATAATG+AGG - chr7_4:42006880-42006899 Msa1154540:CDS 35.0%
! AATTTGCTTGGAGATGATGA+TGG - chr7_4:42006912-42006931 Msa1154540:CDS 35.0%
TATTATATGCTGCGTGATTG+TGG - chr7_4:42007018-42007037 Msa1154540:CDS 35.0%
! ATCGATGGTTGATACTTTAG+AGG - chr7_4:42007220-42007239 Msa1154540:intron 35.0%
! TGATTTGTGTGAAGTGTTAG+TGG - chr7_4:42007351-42007370 Msa1154540:intron 35.0%
! GATTTGTGTGAAGTGTTAGT+GGG - chr7_4:42007352-42007371 Msa1154540:intron 35.0%
GCAAATTGAAGAGTTGTGAT+TGG + chr7_4:42007705-42007724 None:intergenic 35.0%
AAATAAAGGCAGTTGTTGTG+TGG - chr7_4:42007747-42007766 Msa1154540:intron 35.0%
! AAAATTACACTGACTGTGCA+TGG - chr7_4:42007797-42007816 Msa1154540:intron 35.0%
!! TGCAAAAAGGTCTTTTTGGT+TGG + chr7_4:42007885-42007904 None:intergenic 35.0%
! AGACCTTTTTGCAAGATCTT+AGG - chr7_4:42007892-42007911 Msa1154540:intron 35.0%
! ACTGATTCATGTCTGTCATT+TGG - chr7_4:42008154-42008173 Msa1154540:CDS 35.0%
TTTGGAGACATAAACATTGG+GGG - chr7_4:42008172-42008191 Msa1154540:CDS 35.0%
ACGTTTATTCCCTTCGAATG+AGG - chr7_4:42000238-42000257 Msa1154540:three_prime_UTR 40.0%
! GAGTTTTCTTCCTCATTCGA+AGG + chr7_4:42000251-42000270 None:intergenic 40.0%
TCGGTGAATGAACAAAATGG+GGG - chr7_4:42000272-42000291 Msa1154540:three_prime_UTR 40.0%
TATTCATCTTCTGGGCCATT+TGG - chr7_4:42000378-42000397 Msa1154540:three_prime_UTR 40.0%
ATTCATCTTCTGGGCCATTT+GGG - chr7_4:42000379-42000398 Msa1154540:three_prime_UTR 40.0%
! CCGATTCGTGTTTATATGGA+TGG - chr7_4:42000438-42000457 Msa1154540:three_prime_UTR 40.0%
CTTTCATGTAAAGGGGTAAC+AGG + chr7_4:42000582-42000601 None:intergenic 40.0%
CTGTTACCCCTTTACATGAA+AGG - chr7_4:42000580-42000599 Msa1154540:intron 40.0%
AAGCTCAGTGGTTGAAACAT+AGG - chr7_4:42000822-42000841 Msa1154540:intron 40.0%
!! GAACAAAGTGTTGAACGATG+AGG - chr7_4:42000918-42000937 Msa1154540:intron 40.0%
CGGAGATCTTGATATAGTGT+TGG - chr7_4:42000969-42000988 Msa1154540:intron 40.0%
GTGGTAAGACTAGATGTGAT+AGG - chr7_4:42000996-42001015 Msa1154540:intron 40.0%
GGCAATATTAGAGAGAGTTG+AGG - chr7_4:42001028-42001047 Msa1154540:intron 40.0%
! ATATGGTGGAAAATAGGCTC+AGG - chr7_4:42001069-42001088 Msa1154540:intron 40.0%
ACTAAGGAGAGTAGATCAGA+TGG - chr7_4:42001127-42001146 Msa1154540:intron 40.0%
TAGATCAGATGGAGTTTAGC+CGG - chr7_4:42001138-42001157 Msa1154540:intron 40.0%
TTCCTCTATCTCTAGTGATC+CGG + chr7_4:42001160-42001179 None:intergenic 40.0%
CTTCGATACACTCACTATCA+GGG + chr7_4:42001377-42001396 None:intergenic 40.0%
ACTTCGATACACTCACTATC+AGG + chr7_4:42001378-42001397 None:intergenic 40.0%
! ATTATGGTGATGTGTGTGAC+AGG - chr7_4:42001490-42001509 Msa1154540:intron 40.0%
!! TGTGTGTGACAGGTTGATTA+TGG - chr7_4:42001500-42001519 Msa1154540:intron 40.0%
TGCTTATGCTCATGCCAAAA+AGG - chr7_4:42001668-42001687 Msa1154540:intron 40.0%
! TTTATAACGGCCAGCCTTTT+TGG + chr7_4:42001685-42001704 None:intergenic 40.0%
!! GTTTCCAGCACTGATATTGT+TGG - chr7_4:42001726-42001745 Msa1154540:intron 40.0%
TGCTTCTCTGTGTAAGAGAA+AGG - chr7_4:42001961-42001980 Msa1154540:intron 40.0%
AGGCAGAAAATGAGATACAC+GGG + chr7_4:42002087-42002106 None:intergenic 40.0%
ACGTCGTGATATTGGTCAAT+TGG - chr7_4:42002268-42002287 Msa1154540:intron 40.0%
CTCAAGTGATCCAATTGACA+AGG + chr7_4:42002349-42002368 None:intergenic 40.0%
! GCTCAACTGGTTTAAGCTAA+GGG + chr7_4:42002528-42002547 None:intergenic 40.0%
! AGCTCAACTGGTTTAAGCTA+AGG + chr7_4:42002529-42002548 None:intergenic 40.0%
AACATGGCTAAATATGGGGA+GGG + chr7_4:42002558-42002577 None:intergenic 40.0%
CCTAGCAACATGGCTAAATA+TGG + chr7_4:42002564-42002583 None:intergenic 40.0%
CCATATTTAGCCATGTTGCT+AGG - chr7_4:42002561-42002580 Msa1154540:CDS 40.0%
!! ATGTTGCTAGGCATTGATGT+GGG - chr7_4:42002573-42002592 Msa1154540:intron 40.0%
TTTCGAAATCTCTTGTGCCT+TGG + chr7_4:42002913-42002932 None:intergenic 40.0%
AAGGCACAAGAGATTTCGAA+AGG - chr7_4:42002912-42002931 Msa1154540:intron 40.0%
AGGCACAAGAGATTTCGAAA+GGG - chr7_4:42002913-42002932 Msa1154540:intron 40.0%
GAACATGTTGTGATCACCTA+TGG - chr7_4:42003159-42003178 Msa1154540:intron 40.0%
CACCTGTGATTGAACTTTCA+TGG - chr7_4:42003294-42003313 Msa1154540:CDS 40.0%
! GCTTTTGATCTCTTTCATGC+TGG - chr7_4:42003503-42003522 Msa1154540:intron 40.0%
! CACCTTGTTTCTCAAATGCT+AGG - chr7_4:42003703-42003722 Msa1154540:intron 40.0%
GACCTAGCATTTGAGAAACA+AGG + chr7_4:42003708-42003727 None:intergenic 40.0%
TCTCTAGACCATACATTGCT+GGG - chr7_4:42003925-42003944 Msa1154540:CDS 40.0%
AAAGGACAGCCCATTAATTG+AGG + chr7_4:42003953-42003972 None:intergenic 40.0%
! GTGGTTATTTCAGGAAGGAA+TGG - chr7_4:42004082-42004101 Msa1154540:intron 40.0%
TTCAGGAAGGAATGGAAGAA+TGG - chr7_4:42004090-42004109 Msa1154540:intron 40.0%
!! AATGGAAGAATGGTGTCATG+TGG - chr7_4:42004100-42004119 Msa1154540:intron 40.0%
GTGTCATGTGGTAAATTGGA+AGG - chr7_4:42004112-42004131 Msa1154540:intron 40.0%
TTGGAAGGACACAAATAGGA+AGG - chr7_4:42004127-42004146 Msa1154540:intron 40.0%
GAAGGCAGTATTGTCAATCA+CGG - chr7_4:42004161-42004180 Msa1154540:intron 40.0%
! GTATTGTCAATCACGGATTG+TGG - chr7_4:42004168-42004187 Msa1154540:intron 40.0%
TACAACACTATAGCCACTGT+TGG - chr7_4:42004314-42004333 Msa1154540:intron 40.0%
!! GGTCTTATTTGGATATGGTC+AGG + chr7_4:42004379-42004398 None:intergenic 40.0%
! GCTCTAAGTCAAAGACCTAT+AGG + chr7_4:42004425-42004444 None:intergenic 40.0%
! CGTGGAGATTTTCTTCTTGT+TGG - chr7_4:42004650-42004669 Msa1154540:intron 40.0%
ATTGTTGGACAGTGTTGTAC+TGG - chr7_4:42004817-42004836 Msa1154540:intron 40.0%
CTTTCATGAAGGCTCATGAT+GGG + chr7_4:42005286-42005305 None:intergenic 40.0%
TCTTTCATGAAGGCTCATGA+TGG + chr7_4:42005287-42005306 None:intergenic 40.0%
AGGTTATAATTGGTGCACCA+TGG - chr7_4:42005341-42005360 Msa1154540:intron 40.0%
GGTTATAATTGGTGCACCAT+GGG - chr7_4:42005342-42005361 Msa1154540:intron 40.0%
ATAGCAGAATTCAAAGCAGC+TGG + chr7_4:42005773-42005792 None:intergenic 40.0%
GAGGATTGTATCAAATCACG+AGG - chr7_4:42006128-42006147 Msa1154540:intron 40.0%
AGTGAAAAAGAGTCTTGGCT+TGG + chr7_4:42006495-42006514 None:intergenic 40.0%
!! TTGCTCACTTTTCTCACACA+AGG + chr7_4:42006590-42006609 None:intergenic 40.0%
GAGAAAAGTGAGCAAGATGT+TGG - chr7_4:42006595-42006614 Msa1154540:CDS 40.0%
AGTGATCGAGTAGGATTGTA+AGG - chr7_4:42006648-42006667 Msa1154540:intron 40.0%
AGTAGGATTGTAAGGAGTGA+TGG - chr7_4:42006656-42006675 Msa1154540:intron 40.0%
ATGATCCATCTAGTGGGATA+AGG - chr7_4:42006778-42006797 Msa1154540:intron 40.0%
TCAAACCTTATCCCACTAGA+TGG + chr7_4:42006786-42006805 None:intergenic 40.0%
!! CAACTTGATAATGAGGCAGT+TGG - chr7_4:42006887-42006906 Msa1154540:CDS 40.0%
GATTAAGAGATCGTTGTGAC+TGG - chr7_4:42006942-42006961 Msa1154540:CDS 40.0%
TGTGGTAAGAATGTATAGGC+TGG - chr7_4:42007036-42007055 Msa1154540:CDS 40.0%
AGGCTGGAAACTAAACAAGA+AGG - chr7_4:42007052-42007071 Msa1154540:CDS 40.0%
TACATGAAACCAGCAACACA+CGG + chr7_4:42007305-42007324 None:intergenic 40.0%
AAGAAAACCACACTCCACAA+GGG + chr7_4:42007479-42007498 None:intergenic 40.0%
TGTTATGTCCTCACTTTCCT+TGG - chr7_4:42007511-42007530 Msa1154540:intron 40.0%
GGAAAACATAATGTGTGCCA+AGG + chr7_4:42007531-42007550 None:intergenic 40.0%
GAGCCTAAGATCTTGCAAAA+AGG + chr7_4:42007898-42007917 None:intergenic 40.0%
ATTTCCAAGCTTCATGCACA+TGG + chr7_4:42007953-42007972 None:intergenic 40.0%
CAGAAACGCAATGAGAAGAA+GGG - chr7_4:42008084-42008103 Msa1154540:CDS 40.0%
TTGGAGACATAAACATTGGG+GGG - chr7_4:42008173-42008192 Msa1154540:CDS 40.0%
! ATAAGGAGTGTGTGAAATCC+TGG + chr7_4:42008205-42008224 None:intergenic 40.0%
CGGTGAATGAACAAAATGGG+GGG - chr7_4:42000273-42000292 Msa1154540:three_prime_UTR 45.0%
! CAGTGTTGAATCTAATGCGG+CGG - chr7_4:42000305-42000324 Msa1154540:three_prime_UTR 45.0%
TCATGTAAAGGGGTAACAGG+AGG + chr7_4:42000579-42000598 None:intergenic 45.0%
CGTATCGCATAAAACACACG+AGG + chr7_4:42000852-42000871 None:intergenic 45.0%
ATGTAGCCATTCCCACTTAG+CGG - chr7_4:42001270-42001289 Msa1154540:intron 45.0%
!! TGCTGTGAAATGGGTTGATG+AGG - chr7_4:42001527-42001546 Msa1154540:intron 45.0%
GTAATGGCATATGGAGCTTC+AGG + chr7_4:42001558-42001577 None:intergenic 45.0%
AGCTCCATATGCCATTACTG+AGG - chr7_4:42001560-42001579 Msa1154540:intron 45.0%
GATCCTTGTGTTCTACCTGA+TGG - chr7_4:42001639-42001658 Msa1154540:intron 45.0%
GTTCCATCAGGTAGAACACA+AGG + chr7_4:42001645-42001664 None:intergenic 45.0%
GCATAAGCATCAGTTCCATC+AGG + chr7_4:42001657-42001676 None:intergenic 45.0%
TATGCTCATGCCAAAAAGGC+TGG - chr7_4:42001672-42001691 Msa1154540:intron 45.0%
AAACAGATAAAGCGCACGGA+AGG - chr7_4:42001702-42001721 Msa1154540:intron 45.0%
CTGACCAACAATATCAGTGC+TGG + chr7_4:42001733-42001752 None:intergenic 45.0%
AAAGACAGTTCAGCAATGGC+CGG - chr7_4:42002018-42002037 Msa1154540:intron 45.0%
GGTCAGCAGAAGTTTGAAGA+CGG - chr7_4:42002041-42002060 Msa1154540:intron 45.0%
TTGTTCAGTTCTCAAACGGG+AGG - chr7_4:42002120-42002139 Msa1154540:intron 45.0%
TGTTCAGTTCTCAAACGGGA+GGG - chr7_4:42002121-42002140 Msa1154540:intron 45.0%
ATTTACAGGGACTTGGGTCA+TGG - chr7_4:42002402-42002421 Msa1154540:intron 45.0%
TCATGGAGCAGTAAACTGAC+CGG - chr7_4:42002419-42002438 Msa1154540:intron 45.0%
CAACATGGCTAAATATGGGG+AGG + chr7_4:42002559-42002578 None:intergenic 45.0%
CACATCAATGCCTAGCAACA+TGG + chr7_4:42002574-42002593 None:intergenic 45.0%
!! CATGTTGCTAGGCATTGATG+TGG - chr7_4:42002572-42002591 Msa1154540:intron 45.0%
!! TGTTGCTAGGCATTGATGTG+GGG - chr7_4:42002574-42002593 Msa1154540:intron 45.0%
CAAGGTTTAACCAAGTGCCA+AGG - chr7_4:42002665-42002684 Msa1154540:intron 45.0%
ACAAACTCTACCTTGGCACT+TGG + chr7_4:42002678-42002697 None:intergenic 45.0%
GGCACAAGAGATTTCGAAAG+GGG - chr7_4:42002914-42002933 Msa1154540:intron 45.0%
GTCTCAAAGCAAGCATGTCT+TGG + chr7_4:42003239-42003258 None:intergenic 45.0%
CTTTCATGCTGGACATGTAG+AGG - chr7_4:42003514-42003533 Msa1154540:intron 45.0%
GATGAGTTTGTAAGGAGGGT+AGG - chr7_4:42003836-42003855 Msa1154540:intron 45.0%
CAGCAATGTATGGTCTAGAG+AGG + chr7_4:42003926-42003945 None:intergenic 45.0%
CTCTCTAGACCATACATTGC+TGG - chr7_4:42003924-42003943 Msa1154540:CDS 45.0%
TTGCTGGGAGCCTCAATTAA+TGG - chr7_4:42003940-42003959 Msa1154540:CDS 45.0%
TGCTGGGAGCCTCAATTAAT+GGG - chr7_4:42003941-42003960 Msa1154540:CDS 45.0%
! ATGGGCTGTCCTTTGATAGA+TGG - chr7_4:42003959-42003978 Msa1154540:CDS 45.0%
TGGGCTGTCCTTTGATAGAT+GGG - chr7_4:42003960-42003979 Msa1154540:CDS 45.0%
CCAAGAACCCCATCTATCAA+AGG + chr7_4:42003971-42003990 None:intergenic 45.0%
CCTTTGATAGATGGGGTTCT+TGG - chr7_4:42003968-42003987 Msa1154540:CDS 45.0%
!! GGTTCTTGGTAATGCCTTCA+GGG - chr7_4:42003982-42004001 Msa1154540:intron 45.0%
! CACAAATAGGAAGGAGTGCA+TGG - chr7_4:42004136-42004155 Msa1154540:intron 45.0%
! CTGTGGGCAATGCACTATTT+TGG + chr7_4:42004262-42004281 None:intergenic 45.0%
TTTCCATTCCTCTCCAACAG+TGG + chr7_4:42004330-42004349 None:intergenic 45.0%
TCTGATGGTAACAAGCATGG+AGG + chr7_4:42004557-42004576 None:intergenic 45.0%
AAGAAAATCTCCACGATCCC+TGG + chr7_4:42004645-42004664 None:intergenic 45.0%
AGCACGTCGAAAATCTGCAA+TGG - chr7_4:42004790-42004809 Msa1154540:intron 45.0%
ACTATTGCCCCCCAGTTTAT+AGG + chr7_4:42005023-42005042 None:intergenic 45.0%
!! TTTGGCTTTGCAGTGCAACT+AGG - chr7_4:42005248-42005267 Msa1154540:intron 45.0%
!! TTGGCTTTGCAGTGCAACTA+GGG - chr7_4:42005249-42005268 Msa1154540:intron 45.0%
ATATCCTTGGACACTTCCCA+TGG + chr7_4:42005361-42005380 None:intergenic 45.0%
!! ATGGGAAGTGTCCAAGGATA+TGG - chr7_4:42005360-42005379 Msa1154540:intron 45.0%
TGTACCTGACCCCAAATAGT+TGG - chr7_4:42005636-42005655 Msa1154540:intron 45.0%
! CTATCCAACTATTTGGGGTC+AGG + chr7_4:42005643-42005662 None:intergenic 45.0%
!! TTCAAAGCAGCTGGTTTGAG+AGG + chr7_4:42005764-42005783 None:intergenic 45.0%
!! CTTGCAAGAGGGTGTTAAGT+TGG - chr7_4:42005955-42005974 Msa1154540:intron 45.0%
AAGCTAATGGGAACGGCATA+TGG + chr7_4:42006051-42006070 None:intergenic 45.0%
ATATGCCGTTCCCATTAGCT+TGG - chr7_4:42006050-42006069 Msa1154540:intron 45.0%
! TATGCCGTTCCCATTAGCTT+GGG - chr7_4:42006051-42006070 Msa1154540:intron 45.0%
TGGAAGATGCCCAAGCTAAT+GGG + chr7_4:42006063-42006082 None:intergenic 45.0%
TTGGAAGATGCCCAAGCTAA+TGG + chr7_4:42006064-42006083 None:intergenic 45.0%
ATCAAATCACGAGGCATACC+AGG - chr7_4:42006137-42006156 Msa1154540:intron 45.0%
AAGTGAGCAAGATGTTGGAG+TGG - chr7_4:42006600-42006619 Msa1154540:CDS 45.0%
AGTGGCACTTATTGAAGCGT+TGG - chr7_4:42006618-42006637 Msa1154540:CDS 45.0%
GGTGAGAAAAGTGATCGAGT+AGG - chr7_4:42006639-42006658 Msa1154540:CDS 45.0%
!! AGGCAGTTGGCTAATTTGCT+TGG - chr7_4:42006900-42006919 Msa1154540:CDS 45.0%
! GGTTGATACTTTAGAGGAGC+TGG - chr7_4:42007226-42007245 Msa1154540:intron 45.0%
ACATGAAACCAGCAACACAC+GGG + chr7_4:42007304-42007323 None:intergenic 45.0%
CAAGGGAAAACTCTTGGTCT+TGG + chr7_4:42007462-42007481 None:intergenic 45.0%
! AGACCAAGAGTTTTCCCTTG+TGG - chr7_4:42007462-42007481 Msa1154540:intron 45.0%
ACTCCACAAGGGAAAACTCT+TGG + chr7_4:42007468-42007487 None:intergenic 45.0%
GAAGAAAACCACACTCCACA+AGG + chr7_4:42007480-42007499 None:intergenic 45.0%
AATGTGTGCCAAGGAAAGTG+AGG + chr7_4:42007522-42007541 None:intergenic 45.0%
TAGGCTCATTACTCCCCATT+AGG - chr7_4:42007911-42007930 Msa1154540:intron 45.0%
! AAAGGAGGTGCAACCTAATG+GGG + chr7_4:42007927-42007946 None:intergenic 45.0%
! CAAAGGAGGTGCAACCTAAT+GGG + chr7_4:42007928-42007947 None:intergenic 45.0%
GCAGAAACGCAATGAGAAGA+AGG - chr7_4:42008083-42008102 Msa1154540:CDS 45.0%
AATCTAATGCGGCGGTGAAG+TGG - chr7_4:42000313-42000332 Msa1154540:three_prime_UTR 50.0%
ATCTAATGCGGCGGTGAAGT+GGG - chr7_4:42000314-42000333 Msa1154540:three_prime_UTR 50.0%
GTGGTCGGAGTTATCATCGT+TGG - chr7_4:42000336-42000355 Msa1154540:three_prime_UTR 50.0%
TGGTGGAAAATAGGCTCAGG+TGG - chr7_4:42001072-42001091 Msa1154540:intron 50.0%
AGCCGGATCACTAGAGATAG+AGG - chr7_4:42001155-42001174 Msa1154540:intron 50.0%
TGTAGCCATTCCCACTTAGC+GGG - chr7_4:42001271-42001290 Msa1154540:intron 50.0%
CTAAGCCTTTCCCGCTAAGT+GGG + chr7_4:42001284-42001303 None:intergenic 50.0%
ACTAAGCCTTTCCCGCTAAG+TGG + chr7_4:42001285-42001304 None:intergenic 50.0%
AAGACAGTTCAGCAATGGCC+GGG - chr7_4:42002019-42002038 Msa1154540:intron 50.0%
CTTCAAACTTCTGCTGACCC+CGG + chr7_4:42002040-42002059 None:intergenic 50.0%
CAGCAGAAGTTTGAAGACGG+TGG - chr7_4:42002044-42002063 Msa1154540:intron 50.0%
CATGGAGCAGTAAACTGACC+GGG - chr7_4:42002420-42002439 Msa1154540:intron 50.0%
AGTAAGCTGCATTCATCGCG+AGG + chr7_4:42002798-42002817 None:intergenic 50.0%
ACTTGCTTCTACTGGGTCCA+AGG - chr7_4:42002893-42002912 Msa1154540:intron 50.0%
ACATCAGAATGGGGGATGTG+CGG - chr7_4:42003049-42003068 Msa1154540:intron 50.0%
CTGGAACAGCAAGCATGAGT+AGG + chr7_4:42003444-42003463 None:intergenic 50.0%
TGAGAAACAAGGTGCGTGCT+TGG + chr7_4:42003697-42003716 None:intergenic 50.0%
AGCAACCTCCAGTTGCATCT+TGG + chr7_4:42003862-42003881 None:intergenic 50.0%
TTGAGGCTCCCAGCAATGTA+TGG + chr7_4:42003936-42003955 None:intergenic 50.0%
GGGCTGTCCTTTGATAGATG+GGG - chr7_4:42003961-42003980 Msa1154540:CDS 50.0%
!! GGGTTCTTGGTAATGCCTTC+AGG - chr7_4:42003981-42004000 Msa1154540:intron 50.0%
GGATGCTTGAGTAACCCTGA+AGG + chr7_4:42003999-42004018 None:intergenic 50.0%
! AGGAAGGAGTGCATGGTTGA+AGG - chr7_4:42004143-42004162 Msa1154540:intron 50.0%
CACTATAGCCACTGTTGGAG+AGG - chr7_4:42004319-42004338 Msa1154540:intron 50.0%
TAGCCACTGTTGGAGAGGAA+TGG - chr7_4:42004324-42004343 Msa1154540:intron 50.0%
TATGGTCAGGCAGACTCAAG+AGG + chr7_4:42004366-42004385 None:intergenic 50.0%
TATAGATCCTGAGGCTTGCC+AGG - chr7_4:42004624-42004643 Msa1154540:intron 50.0%
ATAGATCCTGAGGCTTGCCA+GGG - chr7_4:42004625-42004644 Msa1154540:intron 50.0%
ACGTTTGCAACCTGACTGTC+TGG + chr7_4:42004688-42004707 None:intergenic 50.0%
! TGGCTTTGCAGTGCAACTAG+GGG - chr7_4:42005250-42005269 Msa1154540:intron 50.0%
TGTGCTAGCATGTCGCTATG+TGG - chr7_4:42005315-42005334 Msa1154540:intron 50.0%
AGCATGTCGCTATGTGGATG+AGG - chr7_4:42005321-42005340 Msa1154540:intron 50.0%
GATGCCCAAGCTAATGGGAA+CGG + chr7_4:42006058-42006077 None:intergenic 50.0%
!! CGGTGTTGGCTATACAGTGT+CGG - chr7_4:42006407-42006426 Msa1154540:intron 50.0%
!! AGAGTCTTGGCTTGGTACAC+AGG + chr7_4:42006487-42006506 None:intergenic 50.0%
GAGATCGTTGTGACTGGAGT+TGG - chr7_4:42006948-42006967 Msa1154540:CDS 50.0%
ACGGGAACAAGCAGGAAAGA+GGG + chr7_4:42007286-42007305 None:intergenic 50.0%
! GAGTTTTCCCTTGTGGAGTG+TGG - chr7_4:42007469-42007488 Msa1154540:intron 50.0%
GTTGTGTGGCAAGCTGTGAT+TGG - chr7_4:42007761-42007780 Msa1154540:intron 50.0%
! GGCAAGCTGTGATTGGTTGT+CGG - chr7_4:42007768-42007787 Msa1154540:intron 50.0%
! GCAAAGGAGGTGCAACCTAA+TGG + chr7_4:42007929-42007948 None:intergenic 50.0%
TCATGCACATGGTGCAAAGG+AGG + chr7_4:42007942-42007961 None:intergenic 50.0%
GCTTCATGCACATGGTGCAA+AGG + chr7_4:42007945-42007964 None:intergenic 50.0%
TGCACCATGTGCATGAAGCT+TGG - chr7_4:42007946-42007965 Msa1154540:intron 50.0%
! AGGAGTGTGTGAAATCCTGG+TGG + chr7_4:42008202-42008221 None:intergenic 50.0%
TTCAGCCATGAGCACGAGTT+AGG - chr7_4:42008294-42008313 Msa1154540:CDS 50.0%
!! CTTCTGGGCCATTTGGGTTG+TGG - chr7_4:42000385-42000404 Msa1154540:three_prime_UTR 55.0%
TTGCGTCAAGCTCGTGCTCT+TGG - chr7_4:42000498-42000517 Msa1154540:CDS 55.0%
CCTTTCCCGCTAAGTGGGAA+TGG + chr7_4:42001279-42001298 None:intergenic 55.0%
CCATTCCCACTTAGCGGGAA+AGG - chr7_4:42001276-42001295 Msa1154540:intron 55.0%
AGACAGTTCAGCAATGGCCG+GGG - chr7_4:42002020-42002039 Msa1154540:intron 55.0%
!! GACGGTGGTGTTGTTGCTAG+TGG - chr7_4:42002059-42002078 Msa1154540:intron 55.0%
GTAAACTGACCGGGAAGCCT+AGG - chr7_4:42002429-42002448 Msa1154540:intron 55.0%
TTCCTAAGGCCTAGGCTTCC+CGG + chr7_4:42002441-42002460 None:intergenic 55.0%
GGAGGGTTGAGTAGCTCAAC+TGG + chr7_4:42002541-42002560 None:intergenic 55.0%
!! TGCTTGCTGTTCCAGAGTCC+AGG - chr7_4:42003449-42003468 Msa1154540:intron 55.0%
AGAGTCCAGGACCTGATGCA+CGG - chr7_4:42003462-42003481 Msa1154540:intron 55.0%
ACAATCCGTGCATCAGGTCC+TGG + chr7_4:42003470-42003489 None:intergenic 55.0%
AGGGTAGGCCAAGATGCAAC+TGG - chr7_4:42003851-42003870 Msa1154540:intron 55.0%
GTAGGCCAAGATGCAACTGG+AGG - chr7_4:42003854-42003873 Msa1154540:intron 55.0%
TACACACGGACCAGACAGTC+AGG - chr7_4:42004675-42004694 Msa1154540:intron 55.0%
!! TGCACCATGGGAAGTGTCCA+AGG - chr7_4:42005354-42005373 Msa1154540:intron 55.0%
CACGGGAACAAGCAGGAAAG+AGG + chr7_4:42007287-42007306 None:intergenic 55.0%
AGCAACACACGGGAACAAGC+AGG + chr7_4:42007294-42007313 None:intergenic 55.0%
TGCTTGTTCCCGTGTGTTGC+TGG - chr7_4:42007293-42007312 Msa1154540:intron 55.0%
GAGAGCAAGACTCACGTGTC+TGG - chr7_4:42008129-42008148 Msa1154540:CDS 55.0%
TAATGCGGCGGTGAAGTGGG+TGG - chr7_4:42000317-42000336 Msa1154540:three_prime_UTR 60.0%
GTGCATCAGGTCCTGGACTC+TGG + chr7_4:42003463-42003482 None:intergenic 60.0%
AACATTGGGGGGTCACCACC+AGG - chr7_4:42008184-42008203 Msa1154540:CDS 60.0%
CGAGGCCTAACTCGTGCTCA+TGG + chr7_4:42008302-42008321 None:intergenic 60.0%
TGAGCACGAGTTAGGCCTCG+TGG - chr7_4:42008302-42008321 Msa1154540:CDS 60.0%
! AATCAGAGGCGCGAACCACG+AGG + chr7_4:42008320-42008339 None:intergenic 60.0%
GACCGGGAAGCCTAGGCCTT+AGG - chr7_4:42002436-42002455 Msa1154540:intron 65.0%
CACGATCCCTGGCAAGCCTC+AGG + chr7_4:42004634-42004653 None:intergenic 65.0%
CTGAGGCTTGCCAGGGATCG+TGG - chr7_4:42004632-42004651 Msa1154540:intron 65.0%
GCGGCGGTGAAGTGGGTGGT+CGG - chr7_4:42000321-42000340 Msa1154540:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 42000044 42008576 42000044 ID=Msa1154540;Name=Msa1154540
chr7_4 mRNA 42000044 42008576 42000044 ID=Msa1154540-mRNA-1;Parent=Msa1154540;Name=Msa1154540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=235|1|1|1|1|1|9|418|422
chr7_4 exon 42000044 42000533 42000044 ID=Msa1154540-mRNA-1:exon:10298;Parent=Msa1154540-mRNA-1
chr7_4 exon 42002462 42002584 42002462 ID=Msa1154540-mRNA-1:exon:10297;Parent=Msa1154540-mRNA-1
chr7_4 exon 42002699 42002764 42002699 ID=Msa1154540-mRNA-1:exon:10296;Parent=Msa1154540-mRNA-1
chr7_4 exon 42003239 42003359 42003239 ID=Msa1154540-mRNA-1:exon:10295;Parent=Msa1154540-mRNA-1
chr7_4 exon 42003924 42003991 42003924 ID=Msa1154540-mRNA-1:exon:10294;Parent=Msa1154540-mRNA-1
chr7_4 exon 42005085 42005156 42005085 ID=Msa1154540-mRNA-1:exon:10293;Parent=Msa1154540-mRNA-1
chr7_4 exon 42006478 42006665 42006478 ID=Msa1154540-mRNA-1:exon:10292;Parent=Msa1154540-mRNA-1
chr7_4 exon 42006873 42007108 42006873 ID=Msa1154540-mRNA-1:exon:10291;Parent=Msa1154540-mRNA-1
chr7_4 exon 42008019 42008576 42008019 ID=Msa1154540-mRNA-1:exon:10290;Parent=Msa1154540-mRNA-1
chr7_4 five_prime_UTR 42008342 42008576 42008342 ID=Msa1154540-mRNA-1:five_prime_utr;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42008019 42008341 42008019 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42006873 42007108 42006873 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42006478 42006665 42006478 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42005085 42005156 42005085 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42003924 42003991 42003924 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42003239 42003359 42003239 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42002699 42002764 42002699 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42002462 42002584 42002462 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 CDS 42000462 42000533 42000462 ID=Msa1154540-mRNA-1:cds;Parent=Msa1154540-mRNA-1
chr7_4 three_prime_UTR 42000044 42000461 42000044 ID=Msa1154540-mRNA-1:three_prime_utr;Parent=Msa1154540-mRNA-1
Gene Sequence

>Msa1154540

ATGAACAAAATGGGGGGTATCACTAGCAGTGTTGAATCTAATGCGGCGGTGAAGTGGGTGGTCGGAGTTATCATCGTTGGTGTATCAGTATTAGGTTTTTATTCATCTTCTGGGCCATTTGGGTTGTGGAAAAAGAATGGTAGAAGAAGGAATAAAAAACCGATTCGTGTTTATATGGATGGTTGTTTTGATATGATGCATTATGGTCATTGTAATGCTTTGCGTCAAGCTCGTGCTCTTGGTGATCAATTGATTGTTGGTGTTGTTAGTGATGATGAAATTATTGCTAATAAGGGTCCTCCTGTTACCCCTTTACATGAAAGGTTGATTATGGTGAATGCTGTGAAATGGGTTGATGAGGTTATTCCTGAAGCTCCATATGCCATTACTGAGGAATTCATGAAGAAGCTTTTCGATGAGTATAATATAGATTACATTATTCATGGGGATGATCCTTGTGTTCTACCTGATGGAACTGATGCTTATGCTCATGCCAAAAAGGCTGGCCGTTATAAACAGATAAAGCGCACGGAAGGAGTTTCCAGCACTGATATTGTTGGTCGAATGCTTCTCTGTGTAAGAGAAAGGAATATTGCCGACACTCATAATCATTCTTCTTTACAAAGACAGTTCAGCAATGGCCGGGGTCAGCAGAAGTTTGAAGACGGTGGTGTTGTTGCTAGTGGAACCCGTGTATCTCATTTTCTGCCTACATCTCGTAGAATTGTTCAGTTCTCAAACGGGAGGAGTCCAGGACCTGATGCACGGATTGTATATATAGATGGCGCTTTTGATCTCTTTCATGCTGGACATGTAGAGATCCTGAGGCTTGCCAGGGATCGTGGAGATTTTCTTCTTGTTGGAATACACACGGACCAGACAGTCAGTGCAACTAGGGGATTGCATCGTCCCATCATGAGCCTTCATGAAAGAAGTCTAAGTGTGCTAGCATGTCGCTATGTGGATGAGGTTATAATTGGTGCACCATGGGAAGTGTCCAAGGATATGATCACAACATTTAACATCTCATTAGTTGTTCATGGAACAACTGCAGAGAATACTGATTTTCAGAAGGAACAATCAAATCCATATGCCGTTCCCATTAGCTTGGGCATCTTCCAAATTTTAGATAGTCCTTTAGATATAACAACTACTACAATAATTAGGAGGATTGTATCAAATCACGAGGCATACCAGAAACGCAATGAGAAGAAGGGTGAAAGTGAGAAAAAATACTATGAGAGCAAGACTCACGTGTCTGGAGACTGA
Protein sequence

>Msa1154540

MNKMGGITSSVESNAAVKWVVGVIIVGVSVLGFYSSSGPFGLWKKNGRRRNKKPIRVYMDGCFDMMHYGHCNALRQARALGDQLIVGVVSDDEIIANKGPPVTPLHERLIMVNAVKWVDEVIPEAPYAITEEFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYAHAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERNIADTHNHSSLQRQFSNGRGQQKFEDGGVVASGTRVSHFLPTSRRIVQFSNGRSPGPDARIVYIDGAFDLFHAGHVEILRLARDRGDFLLVGIHTDQTVSATRGLHRPIMSLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTTAENTDFQKEQSNPYAVPISLGIFQILDSPLDITTTTIIRRIVSNHEAYQKRNEKKGESEKKYYESKTHVSGD*