AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0730640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730640 MtrunA17_Chr5g0424301 99.454 733 4 0 1 733 1 733 0.0 1512
Msa0730640 MtrunA17_Chr3g0115111 75.310 725 143 8 32 732 19 731 0.0 1096
Msa0730640 MtrunA17_Chr3g0131001 67.109 678 191 7 64 732 50 704 0.0 884
Msa0730640 MtrunA17_Chr8g0385201 62.267 697 206 8 51 732 12 666 0.0 868
Msa0730640 MtrunA17_Chr8g0353121 50.667 750 303 12 37 732 14 750 0.0 678
Msa0730640 MtrunA17_Chr1g0171491 48.816 760 276 14 64 732 56 793 0.0 654
Msa0730640 MtrunA17_Chr1g0180261 42.481 798 307 15 60 729 42 815 0.0 586
Msa0730640 MtrunA17_Chr8g0380791 40.078 766 342 17 65 727 9 760 1.33e-180 534
Msa0730640 MtrunA17_Chr3g0082501 62.830 417 137 7 320 732 358 760 2.47e-167 500
Msa0730640 MtrunA17_Chr3g0082501 58.580 169 70 0 64 232 59 227 1.89e-63 226
Msa0730640 MtrunA17_Chr3g0082501 32.258 124 84 0 70 193 134 257 3.54e-15 79.7
Msa0730640 MtrunA17_Chr3g0082501 44.318 88 49 0 69 156 156 243 7.20e-14 75.5
Msa0730640 MtrunA17_Chr7g0256301 57.882 425 156 7 311 732 387 791 4.50e-162 488
Msa0730640 MtrunA17_Chr7g0256301 60.714 168 66 0 65 232 67 234 5.86e-66 233
Msa0730640 MtrunA17_Chr7g0256301 45.570 79 43 0 70 148 164 242 3.76e-12 70.1
Msa0730640 MtrunA17_Chr7g0256301 35.354 99 64 0 70 168 141 239 1.09e-11 68.6
Msa0730640 MtrunA17_Chr7g0256301 34.343 99 56 1 136 234 69 158 2.46e-11 67.4
Msa0730640 MtrunA17_Chr8g0377671 39.205 176 107 0 57 232 8 183 3.01e-34 132
Msa0730640 MtrunA17_Chr8g0377671 34.591 159 104 0 69 227 112 270 8.21e-24 102
Msa0730640 MtrunA17_Chr8g0377671 37.681 138 86 0 68 205 134 271 1.30e-21 95.9
Msa0730640 MtrunA17_Chr4g0059911 37.288 177 108 1 56 232 46 219 2.05e-31 126
Msa0730640 MtrunA17_Chr4g0059911 30.000 200 133 3 59 253 94 291 1.42e-19 91.3
Msa0730640 MtrunA17_Chr4g0059911 27.200 250 150 5 94 318 11 253 3.46e-18 87.4
Msa0730640 MtrunA17_Chr8g0377191 36.842 171 108 0 62 232 5 175 3.81e-31 120
Msa0730640 MtrunA17_Chr8g0377211 39.216 153 92 1 53 205 4 155 4.37e-30 117
Msa0730640 MtrunA17_Chr8g0382971 37.500 168 105 0 65 232 21 188 4.54e-30 122
Msa0730640 MtrunA17_Chr8g0382971 34.940 166 108 0 67 232 69 234 9.74e-25 106
Msa0730640 MtrunA17_Chr8g0382971 34.286 175 111 2 59 231 109 281 2.78e-22 99.4
Msa0730640 MtrunA17_Chr2g0316611 35.678 199 102 2 49 224 19 214 9.25e-27 112
Msa0730640 MtrunA17_Chr2g0316611 35.714 182 94 1 67 225 172 353 2.33e-24 105
Msa0730640 MtrunA17_Chr2g0316611 41.935 124 72 0 69 192 243 366 3.84e-22 99.0
Msa0730640 MtrunA17_Chr2g0316611 30.526 190 118 1 65 240 147 336 6.07e-19 89.4
Msa0730640 MtrunA17_Chr2g0316611 31.915 141 96 0 92 232 36 176 2.10e-16 81.6
Msa0730640 MtrunA17_Chr2g0316631 30.645 248 120 3 49 250 19 260 2.68e-26 110
Msa0730640 MtrunA17_Chr2g0316631 32.258 217 115 3 41 227 72 286 5.17e-25 106
Msa0730640 MtrunA17_Chr2g0316631 32.432 148 100 0 67 214 149 296 2.69e-18 86.3
Msa0730640 MtrunA17_Chr2g0316631 50.000 58 29 0 67 124 241 298 2.51e-11 65.5
Msa0730640 MtrunA17_Chr5g0424111 38.650 163 100 0 70 232 198 360 7.99e-26 111
Msa0730640 MtrunA17_Chr5g0424111 38.889 126 77 0 71 196 245 370 1.17e-18 89.4
Msa0730640 MtrunA17_Chr6g0467061 32.143 224 121 3 69 268 88 304 2.04e-25 108
Msa0730640 MtrunA17_Chr6g0467061 35.135 185 97 1 66 227 16 200 3.03e-25 107
Msa0730640 MtrunA17_Chr6g0467061 30.986 213 119 2 40 224 123 335 2.00e-20 93.2
Msa0730640 MtrunA17_Chr6g0467061 30.808 198 102 4 14 201 163 335 1.40e-17 84.7
Msa0730640 MtrunA17_Chr6g0467061 31.325 166 114 0 67 232 63 228 2.58e-17 84.0
Msa0730640 MtrunA17_Chr7g0233351 35.928 167 107 0 66 232 189 355 2.70e-25 109
Msa0730640 MtrunA17_Chr7g0233351 40.625 128 76 0 71 198 240 367 3.35e-22 100
Msa0730640 MtrunA17_Chr7g0233351 36.449 107 68 0 70 176 262 368 1.49e-14 76.6
Msa0730640 MtrunA17_Chr3g0114791 33.684 190 124 1 45 232 159 348 4.20e-25 108
Msa0730640 MtrunA17_Chr4g0055371 35.928 167 107 0 66 232 169 335 4.81e-24 105
Msa0730640 MtrunA17_Chr4g0055371 36.719 128 81 0 71 198 220 347 2.13e-18 88.6
Msa0730640 MtrunA17_Chr4g0055371 33.019 106 71 0 71 176 243 348 1.66e-11 67.0
Msa0730640 MtrunA17_Chr8g0336161 34.444 180 115 1 56 232 181 360 2.18e-23 103
Msa0730640 MtrunA17_Chr8g0336161 39.844 128 77 0 71 198 245 372 6.45e-21 96.7
Msa0730640 MtrunA17_Chr8g0336161 35.849 106 68 0 71 176 268 373 1.07e-14 77.4
Msa0730640 MtrunA17_Chr5g0398011 41.379 116 68 0 68 183 34 149 1.48e-21 91.7
Msa0730640 MtrunA17_Chr5g0398011 31.579 114 78 0 93 206 36 149 7.31e-14 69.7
Msa0730640 MtrunA17_Chr8g0385241 33.831 201 100 4 65 232 6 206 1.23e-20 95.5
Msa0730640 MtrunA17_Chr8g0385241 30.500 200 105 2 67 232 54 253 4.34e-18 87.4
Msa0730640 MtrunA17_Chr8g0385241 29.545 176 113 2 68 232 124 299 1.19e-16 83.2
Msa0730640 MtrunA17_Chr8g0385241 36.301 146 92 1 90 234 8 153 5.43e-16 81.3
Msa0730640 MtrunA17_Chr8g0385241 31.293 147 100 1 71 216 183 329 9.37e-14 74.3
Msa0730640 MtrunA17_Chr8g0385241 30.137 146 100 1 38 183 199 342 2.76e-11 66.2
Msa0730640 MtrunA17_Chr5g0398021 40.000 100 60 0 69 168 13 112 4.44e-19 84.7
Msa0730640 MtrunA17_Chr5g0398021 32.673 101 68 0 92 192 13 113 3.90e-11 62.0
Msa0730640 MtrunA17_Chr5g0398021 33.673 98 65 0 117 214 15 112 5.52e-11 61.6
Msa0730640 MtrunA17_Chr8g0383331 31.973 147 100 0 69 215 4 150 1.51e-18 83.6
Msa0730640 MtrunA17_Chr8g0383331 36.667 120 76 0 91 210 3 122 3.89e-17 79.7
Msa0730640 MtrunA17_Chr8g0383331 32.231 121 82 0 112 232 1 121 2.16e-16 77.4
Msa0730640 MtrunA17_Chr8g0377221 35.616 146 79 2 66 196 71 216 3.01e-17 82.8
Msa0730640 MtrunA17_Chr8g0377221 29.744 195 99 2 67 223 3 197 8.44e-17 81.3
Msa0730640 MtrunA17_Chr8g0383551 27.706 231 115 7 53 232 10 239 1.75e-16 82.0
Msa0730640 MtrunA17_Chr8g0383551 26.415 159 82 3 91 214 109 267 4.74e-11 65.1
Msa0730640 MtrunA17_Chr1g0210831 29.381 194 105 4 28 220 579 741 1.58e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730640 AT1G21980.1 74.861 720 147 8 31 732 48 751 0.0 1082
Msa0730640 AT1G77740.2 75.035 713 147 7 39 732 53 753 0.0 1075
Msa0730640 AT1G77740.1 75.035 713 147 7 39 732 53 753 0.0 1075
Msa0730640 AT2G26420.2 60.140 715 232 12 47 732 28 718 0.0 838
Msa0730640 AT2G26420.3 60.140 715 232 12 47 732 28 718 0.0 838
Msa0730640 AT2G26420.1 59.664 714 223 11 47 732 28 704 0.0 832
Msa0730640 AT3G07960.1 54.144 724 246 15 64 732 22 714 0.0 739
Msa0730640 AT2G41210.1 52.210 724 274 13 64 732 65 771 0.0 728
Msa0730640 AT3G56960.2 52.407 727 273 14 64 732 67 778 0.0 725
Msa0730640 AT3G56960.1 52.407 727 273 14 64 732 67 778 0.0 725
Msa0730640 AT3G07960.3 55.226 574 190 10 64 583 22 582 0.0 619
Msa0730640 AT3G07960.2 55.226 574 190 10 64 583 22 582 0.0 618
Msa0730640 AT3G07960.2 32.432 148 95 1 39 181 61 208 1.82e-16 84.0
Msa0730640 AT3G07960.4 55.226 574 190 10 64 583 22 582 0.0 618
Msa0730640 AT3G07960.4 32.432 148 95 1 39 181 61 208 1.82e-16 84.0
Msa0730640 AT3G09920.3 41.944 782 326 17 63 732 47 812 0.0 580
Msa0730640 AT3G09920.4 41.944 782 326 17 63 732 47 812 0.0 580
Msa0730640 AT3G09920.2 41.944 782 326 17 63 732 47 812 0.0 580
Msa0730640 AT3G09920.1 41.944 782 326 17 63 732 47 812 0.0 580
Msa0730640 AT1G10900.2 41.821 758 340 16 65 732 7 753 0.0 543
Msa0730640 AT1G10900.1 41.821 758 340 16 65 732 7 753 0.0 543
Msa0730640 AT1G10900.3 41.821 758 340 16 65 732 7 753 0.0 543
Msa0730640 AT1G60890.1 40.722 776 338 18 64 731 6 767 8.57e-180 533
Msa0730640 AT1G60890.2 40.722 776 338 18 64 731 18 779 9.35e-180 533
Msa0730640 AT1G01460.1 37.825 423 214 8 355 732 4 422 7.05e-81 265
Msa0730640 AT4G01190.1 38.095 399 189 6 371 730 12 391 2.87e-78 257
Msa0730640 AT4G01190.3 38.095 399 189 6 371 730 22 401 3.70e-78 257
Msa0730640 AT4G01190.2 38.095 399 189 6 371 730 22 401 3.70e-78 257
Msa0730640 AT1G77660.1 37.126 167 105 0 66 232 175 341 8.61e-27 114
Msa0730640 AT1G77660.1 36.508 126 80 0 71 196 226 351 1.12e-16 83.6
Msa0730640 AT1G21920.2 37.423 163 102 0 70 232 175 337 5.36e-25 107
Msa0730640 AT1G21920.2 38.281 128 79 0 71 198 222 349 4.32e-18 87.4
Msa0730640 AT1G21920.1 37.423 163 102 0 70 232 175 337 8.17e-25 108
Msa0730640 AT1G21920.1 38.281 128 79 0 71 198 222 349 5.62e-18 87.4
Msa0730640 AT2G35170.1 35.404 161 104 0 72 232 229 389 5.40e-23 103
Msa0730640 AT2G35170.1 37.984 129 80 0 71 199 274 402 1.38e-21 99.4
Msa0730640 AT4G17080.1 34.969 163 106 0 70 232 258 420 1.75e-22 102
Msa0730640 AT4G17080.1 37.209 129 81 0 71 199 305 433 4.93e-21 97.8
Msa0730640 AT4G17080.1 32.867 143 94 1 90 232 234 374 6.34e-13 72.4
Msa0730640 AT1G34260.2 34.158 202 103 10 398 579 1192 1383 1.78e-14 78.2
Msa0730640 AT1G34260.1 34.158 202 103 10 398 579 1192 1383 1.78e-14 78.2
Msa0730640 AT1G34260.3 34.158 202 103 10 398 579 1192 1383 1.78e-14 78.2
Msa0730640 AT1G34260.4 34.158 202 103 10 398 579 952 1143 1.93e-14 78.2
Msa0730640 AT1G75010.1 30.469 128 87 2 94 220 604 730 1.46e-12 71.6

Find 232 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGCGTTCTATATTT+TGG 0.084583 5_1:+40383861 Msa0730640:CDS
CACCAGTGAATTCTCATATT+TGG 0.134783 5_1:-40382210 None:intergenic
TGGCGTAACGGCGTTATATC+TGG 0.180746 5_1:+40380773 Msa0730640:CDS
TGACAACACTTATGACAAAA+TGG 0.237609 5_1:+40382753 Msa0730640:CDS
ACATTTGAGGAAGCTGTTTC+AGG 0.245765 5_1:+40381667 Msa0730640:CDS
CTGGGAAGGGTTCGTTAGTT+TGG 0.245826 5_1:+40380792 Msa0730640:CDS
CACTGGTGACAAAATTCTTT+GGG 0.252892 5_1:+40382225 Msa0730640:CDS
TTAATTTGCAATTGGGGATT+AGG 0.273921 5_1:+40381206 Msa0730640:CDS
GCCAACCGTTCTGCTCTTGC+TGG 0.278983 5_1:-40383765 None:intergenic
ATCCAAAGCTATACTCAAAA+AGG 0.280883 5_1:+40383979 Msa0730640:CDS
TCTCCACCGGCGGTGATTGC+TGG 0.283531 5_1:+40380287 Msa0730640:CDS
CTTGGAAAACGAGAAAATTA+TGG 0.284377 5_1:+40382696 Msa0730640:CDS
TGTTTCGTGTACAACGAAAT+TGG 0.287459 5_1:+40382526 Msa0730640:CDS
TGAGCGGGATTGTGAGTTCT+TGG 0.304803 5_1:+40382678 Msa0730640:CDS
AAATCAAATCGTCTATGAAT+TGG 0.308050 5_1:-40382414 None:intergenic
TCACTGGTGACAAAATTCTT+TGG 0.313285 5_1:+40382224 Msa0730640:CDS
TGGAAACGTGGAAAAGCTTC+AGG 0.316635 5_1:+40380497 Msa0730640:CDS
TTTGTGATCATCATGATTCA+TGG 0.316766 5_1:-40384102 None:intergenic
CCATCATATTCATATCCTAT+TGG 0.327679 5_1:-40384394 None:intergenic
TCTTCAGAAAATCATTAATC+AGG 0.329444 5_1:+40383727 Msa0730640:intron
TTCATAACACCTTGTCCTTT+CGG 0.334631 5_1:-40380857 None:intergenic
AATTATGGACTACAGTCTTT+TGG 0.340214 5_1:+40382711 Msa0730640:CDS
TTCTGCTCTTGCTGGCATAT+TGG 0.341644 5_1:-40383757 None:intergenic
TAAGCCTCCCCGCTGCTATA+AGG 0.344398 5_1:-40383840 None:intergenic
ATGAAGATTCAACATGGTTT+TGG 0.351168 5_1:+40380875 Msa0730640:CDS
TCGAAGCAGAGTTGCAAGAT+AGG 0.359055 5_1:+40382938 Msa0730640:CDS
TGGGAAGGGTTCGTTAGTTT+GGG 0.361513 5_1:+40380793 Msa0730640:CDS
TTGATCCTAAGGAGAAGTTC+TGG 0.368369 5_1:+40381372 Msa0730640:CDS
GGTTCGTTAGTTTGGGTTAA+CGG 0.369043 5_1:+40380800 Msa0730640:CDS
AATTTATTGTGGTTACCAAT+AGG 0.369864 5_1:+40384379 Msa0730640:three_prime_UTR
ATGGATCCGGGAAGTATCTA+TGG 0.372629 5_1:+40380447 Msa0730640:CDS
TTGAAACCCACTTGCAAAAG+AGG 0.384867 5_1:+40384149 Msa0730640:three_prime_UTR
GGACGTTACGTTTGGAAGAA+TGG 0.386687 5_1:+40380731 Msa0730640:CDS
GACAACACTTATGACAAAAT+GGG 0.387432 5_1:+40382754 Msa0730640:CDS
GAAGAATATTCATTGAAGAT+TGG 0.390671 5_1:+40384018 Msa0730640:CDS
TTTGATGCTTAATTTGCAAT+TGG 0.398155 5_1:+40381198 Msa0730640:CDS
TAATCATGAATCTGTCATCT+TGG 0.402081 5_1:-40381784 None:intergenic
TGATGATGATTTGCTGGATC+AGG 0.405005 5_1:+40384276 Msa0730640:three_prime_UTR
CCATGATGATGATGATTTGC+TGG 0.406506 5_1:+40384270 Msa0730640:three_prime_UTR
TCTGTTGATACTACTGTTAG+TGG 0.407554 5_1:+40380950 Msa0730640:CDS
CTGATGAACAGTAAACTCTA+AGG 0.407609 5_1:-40384174 None:intergenic
ATGGTCAAGGACGTTACGTT+TGG 0.409474 5_1:+40380723 Msa0730640:CDS
GTTTCATCAATCTCATCCTC+AGG 0.418360 5_1:-40382471 None:intergenic
GGATCCATTCGGTACGTTGC+CGG 0.418393 5_1:-40380432 None:intergenic
TTGATGAGGCGGGGTAATCT+TGG 0.419366 5_1:-40381417 None:intergenic
TTGGGTTAACGGAAACCGTT+TGG 0.419511 5_1:+40380811 Msa0730640:CDS
GATAGGGATCGAGTTAAATC+TGG 0.420387 5_1:+40382955 Msa0730640:CDS
GTCGGTCCATAGATACTTCC+CGG 0.423054 5_1:-40380453 None:intergenic
TTGATGCTTAATTTGCAATT+GGG 0.424572 5_1:+40381199 Msa0730640:CDS
GGCAACGTACCGAATGGATC+CGG 0.425374 5_1:+40380434 Msa0730640:CDS
TTTGATTCTTCAGACATTTG+AGG 0.429922 5_1:+40381654 Msa0730640:intron
TTGGAGGGTTTGTGGGAGAA+TGG 0.430235 5_1:+40380830 Msa0730640:CDS
TTCTATGCCGGAAGTTTCTC+CGG 0.430931 5_1:+40380413 Msa0730640:CDS
TACGTTGCCGGAGAAACTTC+CGG 0.431893 5_1:-40380420 None:intergenic
CTTGTCCAGAACTTCTCCTT+AGG 0.442703 5_1:-40381377 None:intergenic
AACTCAAGTGAGATTCTTTG+AGG 0.444966 5_1:-40384213 None:intergenic
GACGTTACGTTTGGAAGAAT+GGG 0.445546 5_1:+40380732 Msa0730640:CDS
CTGGTCAAACTATTTCTAAA+GGG 0.449919 5_1:+40381161 Msa0730640:CDS
CTTAGAGAACTTTCCTCTCC+CGG 0.455504 5_1:+40381734 Msa0730640:CDS
CATAGACGATTTGATTTGAA+AGG 0.457560 5_1:+40382420 Msa0730640:CDS
GGGACTTATTTAATTTATTG+TGG 0.462660 5_1:+40384368 Msa0730640:three_prime_UTR
GTTCAGATCAAGGTCTTTGA+GGG 0.462840 5_1:-40382499 None:intergenic
ATCAAACCGCGGAGTTTCGA+TGG 0.467094 5_1:+40381435 Msa0730640:CDS
CAAATGGCTGATTCCACCAT+TGG 0.468458 5_1:-40383814 None:intergenic
TCCTTGTTGTTTCTCTTCTG+AGG 0.469889 5_1:+40381129 Msa0730640:CDS
TCCGATAGAAAACACGGGTT+CGG 0.471872 5_1:+40380641 Msa0730640:CDS
AATCATGAATCTGTCATCTT+GGG 0.472481 5_1:-40381783 None:intergenic
GAAGAACAACATTCCTGAAC+CGG 0.472489 5_1:+40380247 Msa0730640:CDS
GTACATTGTGTGAAACCTAT+TGG 0.473664 5_1:+40382248 Msa0730640:CDS
GTGATACATATCGCGGGTCA+TGG 0.475326 5_1:+40380615 Msa0730640:CDS
CCTGGTCAAACTATTTCTAA+AGG 0.477641 5_1:+40381160 Msa0730640:CDS
TCAGATCCGGTTTATTGTGA+TGG 0.478024 5_1:+40382368 Msa0730640:intron
GAAACCGTTTGGAGGGTTTG+TGG 0.478922 5_1:+40380822 Msa0730640:CDS
CCAATAGGATATGAATATGA+TGG 0.479090 5_1:+40384394 Msa0730640:three_prime_UTR
GGCGTAACGGCGTTATATCT+GGG 0.483135 5_1:+40380774 Msa0730640:CDS
GATTGCCCATCACAATAAAC+CGG 0.485074 5_1:-40382374 None:intergenic
AAACCGTTTGGAGGGTTTGT+GGG 0.486108 5_1:+40380823 Msa0730640:CDS
ATTTGAATCCTTATAGCAGC+GGG 0.489048 5_1:+40383832 Msa0730640:CDS
GGATGCTTTCGAAACTCATC+AGG 0.490101 5_1:-40381109 None:intergenic
ATACCAGTGCGTAGAAGAAA+AGG 0.493562 5_1:-40382784 None:intergenic
TCGGGTCGAATGGAAGGATT+CGG 0.497771 5_1:+40380572 Msa0730640:CDS
GATACTACTGTTAGTGGTAG+AGG 0.499269 5_1:+40380956 Msa0730640:CDS
GATTATATGTTGGCTATATG+TGG 0.502251 5_1:+40381701 Msa0730640:CDS
AACTCCGCGGTTTGATGAGG+CGG 0.504312 5_1:-40381428 None:intergenic
AAATATAGGAAGAGGGGTGA+AGG 0.508339 5_1:+40384422 Msa0730640:three_prime_UTR
AGTTCAGATCAAGGTCTTTG+AGG 0.508946 5_1:-40382500 None:intergenic
GATTCCCAAATACAAATCCT+AGG 0.509645 5_1:-40381001 None:intergenic
CAGATCCGGTTTATTGTGAT+GGG 0.510029 5_1:+40382369 Msa0730640:intron
GTTGCATGTACGAAGGTGAA+TGG 0.510431 5_1:+40380477 Msa0730640:CDS
GTGGAAAAGCTTCAGGGAAA+GGG 0.511451 5_1:+40380504 Msa0730640:CDS
ACTCCGCGGTTTGATGAGGC+GGG 0.514713 5_1:-40381427 None:intergenic
CGCTGCTATAAGGATTCAAA+TGG 0.515820 5_1:-40383830 None:intergenic
TAATTATTATATTATTCTTG+AGG 0.517028 5_1:+40384552 Msa0730640:three_prime_UTR
GAAACCTATTGGAGGCCAAA+AGG 0.519281 5_1:+40382259 Msa0730640:CDS
GAAGGATTCGGAACATTCGT+TGG 0.521458 5_1:+40380584 Msa0730640:CDS
TCTTCTGAGGTTAAGAGACC+TGG 0.521675 5_1:+40381142 Msa0730640:CDS
GCAATCACCGCCGGTGGAGA+AGG 0.522071 5_1:-40380284 None:intergenic
AAACTTACTTAATAAGATCC+TGG 0.522332 5_1:-40382551 None:intergenic
CGTGGAAAAGCTTCAGGGAA+AGG 0.523548 5_1:+40380503 Msa0730640:CDS
AGATACTTCCCGGATCCATT+CGG 0.526389 5_1:-40380443 None:intergenic
TTAGAGAACTTTCCTCTCCC+GGG 0.528049 5_1:+40381735 Msa0730640:CDS
CGAAGCAGAGTTGCAAGATA+GGG 0.528077 5_1:+40382939 Msa0730640:CDS
CCGAACGGAGATTTCTATGC+CGG 0.528423 5_1:+40380401 Msa0730640:CDS
GTGATTTATACGAAGGGTGG+TGG 0.528555 5_1:+40380684 Msa0730640:CDS
AGAGTTCAAGTCGGGTCGAA+TGG 0.530606 5_1:+40380562 Msa0730640:CDS
CCTTTAGAAATAGTTTGACC+AGG 0.531392 5_1:-40381160 None:intergenic
CAAGAGCAGAACGGTTGGCA+AGG 0.532403 5_1:+40383769 Msa0730640:CDS
ATGTACAGTTGTTATACAAA+GGG 0.533655 5_1:+40384505 Msa0730640:three_prime_UTR
TACGAGGGAGAGTTCAAGTC+GGG 0.538370 5_1:+40380554 Msa0730640:CDS
TGATGCTTAATTTGCAATTG+GGG 0.539251 5_1:+40381200 Msa0730640:CDS
TTCAAGTCGGGTCGAATGGA+AGG 0.541704 5_1:+40380566 Msa0730640:CDS
GGAACATTCGTTGGATCCGA+CGG 0.543679 5_1:+40380593 Msa0730640:CDS
TCAAAGAATCTCACTTGAGT+TGG 0.544059 5_1:+40384215 Msa0730640:three_prime_UTR
TGGACAAGGTTTCCGAGTGA+AGG 0.546695 5_1:+40381392 Msa0730640:CDS
CAGATCAAGGTCTTTGAGGG+TGG 0.547100 5_1:-40382496 None:intergenic
CTTTCCTCTCCCGGGAAAAG+CGG 0.547869 5_1:+40381743 Msa0730640:CDS
AATATAGGAAGAGGGGTGAA+GGG 0.550375 5_1:+40384423 Msa0730640:three_prime_UTR
AGCTTCACGGTGGTTTCCGA+TGG 0.550449 5_1:+40380353 Msa0730640:CDS
TTCTACCTCCGCCTTGTGAA+CGG 0.551236 5_1:-40380316 None:intergenic
CAACATTCCTGAACCGGAGA+AGG 0.551643 5_1:+40380253 Msa0730640:CDS
ATTATATGTTGGCTATATGT+GGG 0.552492 5_1:+40381702 Msa0730640:CDS
GCAACGTACCGAATGGATCC+GGG 0.560372 5_1:+40380435 Msa0730640:CDS
TAGAAAGCAAAGAAGAGAAG+AGG 0.560817 5_1:-40380035 None:intergenic
GGAAACGTGGAAAAGCTTCA+GGG 0.560933 5_1:+40380498 Msa0730640:CDS
TCTCCCACAAACCCTCCAAA+CGG 0.561965 5_1:-40380826 None:intergenic
CCCTCGTAAGTCGCTCCTGA+AGG 0.562155 5_1:-40380539 None:intergenic
GTTGTTATACAAAGGGTGGA+TGG 0.563033 5_1:+40384512 Msa0730640:three_prime_UTR
TTCATCAGATCACTGTAAGT+GGG 0.563085 5_1:+40384189 Msa0730640:three_prime_UTR
AATGTACAGTTGTTATACAA+AGG 0.563738 5_1:+40384504 Msa0730640:three_prime_UTR
ATTTGTATTTGGGAATCTGA+AGG 0.563741 5_1:+40381007 Msa0730640:CDS
TGTTGTCATCACGAAAATGA+AGG 0.564482 5_1:-40382738 None:intergenic
TTATGTGTAGATACACGGTT+GGG 0.565022 5_1:+40381309 Msa0730640:intron
TTTGATCAATACACCAATGG+TGG 0.566117 5_1:+40383801 Msa0730640:CDS
TGGGAATCTGAAGGTGAAGC+TGG 0.566561 5_1:+40381016 Msa0730640:CDS
CCAGCAAATCATCATCATCA+TGG 0.566567 5_1:-40384270 None:intergenic
ATAGCCAACATATAATCAGC+AGG 0.569375 5_1:-40381695 None:intergenic
GAAACACATAGTTCAGATCA+AGG 0.569553 5_1:-40382509 None:intergenic
CTAAGGAGAAGTTCTGGACA+AGG 0.572481 5_1:+40381378 Msa0730640:CDS
TCCTTAGGATCAAAATCACT+AGG 0.573231 5_1:-40381362 None:intergenic
TGAAACCCACTTGCAAAAGA+GGG 0.573637 5_1:+40384150 Msa0730640:three_prime_UTR
GTTCATCAGATCACTGTAAG+TGG 0.573715 5_1:+40384188 Msa0730640:three_prime_UTR
GATAAAATATCTTCTCCTGA+AGG 0.573939 5_1:+40384070 Msa0730640:three_prime_UTR
GCCGCCGGCACGAATCTCGC+CGG 0.575511 5_1:+40380129 Msa0730640:five_prime_UTR
GCCAGCAAGAGCAGAACGGT+TGG 0.576008 5_1:+40383764 Msa0730640:CDS
AGTGAAGAAATCTGAAGTCA+AGG 0.576419 5_1:+40381811 Msa0730640:CDS
AGTGACACCGACGAGCTTCA+CGG 0.578015 5_1:+40380340 Msa0730640:CDS
TTCTCCGGCAACGTACCGAA+TGG 0.579587 5_1:+40380428 Msa0730640:CDS
CGAAACTCCGCGGTTTGATG+AGG 0.581720 5_1:-40381431 None:intergenic
TCGATGGAAAGATTACTGTC+CGG 0.582178 5_1:+40381451 Msa0730640:CDS
CCGGCATAGAAATCTCCGTT+CGG 0.582234 5_1:-40380401 None:intergenic
TACAGTTGTTATACAAAGGG+TGG 0.584198 5_1:+40384508 Msa0730640:three_prime_UTR
CGAGATTCGTGCCGGCGGCG+AGG 0.585078 5_1:-40380125 None:intergenic
TGGGAGAATGGTGTTCCGAA+AGG 0.586485 5_1:+40380842 Msa0730640:CDS
GGTTAACGGAAACCGTTTGG+AGG 0.586593 5_1:+40380814 Msa0730640:CDS
GTGTTCCAGACAAATTGAGC+GGG 0.588866 5_1:+40382663 Msa0730640:intron
AGAAAATCATTAATCAGGCT+AGG 0.589168 5_1:+40383732 Msa0730640:intron
TAACGGCGTTATATCTGGGA+AGG 0.589873 5_1:+40380778 Msa0730640:CDS
GTTATGTGTAGATACACGGT+TGG 0.590677 5_1:+40381308 Msa0730640:intron
GTCCAAATATGAGAATTCAC+TGG 0.592833 5_1:+40382208 Msa0730640:CDS
TCCGGCGAGATTCGTGCCGG+CGG 0.593401 5_1:-40380130 None:intergenic
CTCAACAACGGATCTACCAT+CGG 0.594963 5_1:-40380369 None:intergenic
TGACCAGTTAGTACAAAATG+AGG 0.601177 5_1:+40384048 Msa0730640:three_prime_UTR
TGATCCTGCTGATTATATGT+TGG 0.603422 5_1:+40381691 Msa0730640:CDS
GGAAAACAAACCTTCTCCAC+CGG 0.604991 5_1:+40380274 Msa0730640:CDS
AATGGTGTTCCGAAAGGACA+AGG 0.606673 5_1:+40380848 Msa0730640:CDS
GATGATGATTTGCTGGATCA+GGG 0.606983 5_1:+40384277 Msa0730640:three_prime_UTR
GTTAACGGAAACCGTTTGGA+GGG 0.607741 5_1:+40380815 Msa0730640:CDS
GGAATGAGTATGTTGGTGAA+TGG 0.608130 5_1:+40380753 Msa0730640:CDS
GTGTAGATACACGGTTGGGA+AGG 0.610224 5_1:+40381313 Msa0730640:intron
AGAAGCCGTTCACAAGGCGG+AGG 0.613179 5_1:+40380311 Msa0730640:CDS
TATGTTGGTGAATGGCGTAA+CGG 0.613312 5_1:+40380761 Msa0730640:CDS
AAGAATGGGAATGAGTATGT+TGG 0.613469 5_1:+40380746 Msa0730640:CDS
ATACTACTGTTAGTGGTAGA+GGG 0.613626 5_1:+40380957 Msa0730640:CDS
GAGCAGAACGGTTGGCAAGG+AGG 0.613970 5_1:+40383772 Msa0730640:CDS
GGTCAGAAACGTTACGCGAA+CGG 0.615476 5_1:+40380662 Msa0730640:CDS
ACTGGTGACAAAATTCTTTG+GGG 0.617270 5_1:+40382226 Msa0730640:CDS
CTTCCAGCAATCACCGCCGG+TGG 0.622524 5_1:-40380290 None:intergenic
GTAATCTTGGATCCTTCACT+CGG 0.623506 5_1:-40381404 None:intergenic
CTTCTTCCAGCAATCACCGC+CGG 0.623571 5_1:-40380293 None:intergenic
CTCCGCGGTTTGATGAGGCG+GGG 0.626199 5_1:-40381426 None:intergenic
ACAACACTTATGACAAAATG+GGG 0.628764 5_1:+40382755 Msa0730640:CDS
TGATATTGTTGATAATGTCG+AGG 0.629658 5_1:+40381051 Msa0730640:CDS
GCTGGAAGAAGCCGTTCACA+AGG 0.630714 5_1:+40380305 Msa0730640:CDS
TGGAAGCGTAACGTTCAAGA+TGG 0.631023 5_1:+40380704 Msa0730640:CDS
GAACGTTTCCTCATCAACAC+AGG 0.631655 5_1:-40380926 None:intergenic
GCGAACGGTGATTTATACGA+AGG 0.632599 5_1:+40380677 Msa0730640:CDS
GGGATCGAGTTAAATCTGGA+AGG 0.635478 5_1:+40382959 Msa0730640:CDS
GATTTGAAAGGATCTTCACA+TGG 0.636840 5_1:+40382432 Msa0730640:CDS
TGGAGCTCCGATAGAAAACA+CGG 0.638988 5_1:+40380635 Msa0730640:CDS
ACTGAGCATTGATTCCTCGC+CGG 0.640149 5_1:+40380159 Msa0730640:five_prime_UTR
CATTTGAATCCTTATAGCAG+CGG 0.641163 5_1:+40383831 Msa0730640:CDS
CATTGTGTGAAACCTATTGG+AGG 0.647839 5_1:+40382251 Msa0730640:CDS
AACGGCGTTATATCTGGGAA+GGG 0.647935 5_1:+40380779 Msa0730640:CDS
AACGTTTCCTCATCAACACA+GGG 0.651828 5_1:-40380925 None:intergenic
TCATGTTATGTGTAGATACA+CGG 0.652727 5_1:+40381304 Msa0730640:intron
TCATCAGATCACTGTAAGTG+GGG 0.653684 5_1:+40384190 Msa0730640:three_prime_UTR
GGTGAACGATGAAGTTGTTG+AGG 0.655019 5_1:+40380211 Msa0730640:CDS
GAAACCACCGTGAAGCTCGT+CGG 0.655705 5_1:-40380347 None:intergenic
CGTAACGTTCAAGATGGTCA+AGG 0.657499 5_1:+40380710 Msa0730640:CDS
GCCTTCAGGAGCGACTTACG+AGG 0.658455 5_1:+40380538 Msa0730640:CDS
TTCGAAAATGAGTGATACAG+TGG 0.660445 5_1:+40380190 Msa0730640:exon
ACGGTGATTTATACGAAGGG+TGG 0.664730 5_1:+40380681 Msa0730640:CDS
GTTGAGAGAGTACTTCCGAA+CGG 0.664758 5_1:+40380386 Msa0730640:CDS
AAGGGAAAATTGTTTCCCTG+AGG 0.665913 5_1:+40384441 Msa0730640:three_prime_UTR
TGTACAACGAAATTGGTACC+AGG 0.667243 5_1:+40382533 Msa0730640:CDS
AAACAAACCTTCTCCACCGG+CGG 0.669189 5_1:+40380277 Msa0730640:CDS
GGGAAGTATCTATGGACCGA+CGG 0.669212 5_1:+40380455 Msa0730640:CDS
CCGACGGTGATACATATCGC+GGG 0.670057 5_1:+40380609 Msa0730640:CDS
CGAACGGTGATTTATACGAA+GGG 0.671404 5_1:+40380678 Msa0730640:CDS
TGTGTTCCAGACAAATTGAG+CGG 0.672020 5_1:+40382662 Msa0730640:intron
CCCGCGATATGTATCACCGT+CGG 0.676716 5_1:-40380609 None:intergenic
CATACTGAGAAGTTCATGCG+TGG 0.677957 5_1:+40382904 Msa0730640:CDS
CCTTCAGGAGCGACTTACGA+GGG 0.680840 5_1:+40380539 Msa0730640:CDS
GAATCCTTATAGCAGCGGGG+AGG 0.683149 5_1:+40383836 Msa0730640:CDS
GGAAGAAGCCGTTCACAAGG+CGG 0.683363 5_1:+40380308 Msa0730640:CDS
TCCGACGGTGATACATATCG+CGG 0.684537 5_1:+40380608 Msa0730640:CDS
TTATATGTTGGCTATATGTG+GGG 0.684561 5_1:+40381703 Msa0730640:CDS
ACCTCAGAAGAGAAACAACA+AGG 0.687681 5_1:-40381130 None:intergenic
ATCTTTCCATCGAAACTCCG+CGG 0.690643 5_1:-40381441 None:intergenic
ACCTTCGTACATGCAACCGT+CGG 0.692042 5_1:-40380471 None:intergenic
ATATGCCAGCAAGAGCAGAA+CGG 0.698498 5_1:+40383760 Msa0730640:CDS
GGTGTTATGAAGATTCAACA+TGG 0.703414 5_1:+40380869 Msa0730640:CDS
CGGAAGTACTCTCTCAACAA+CGG 0.711881 5_1:-40380381 None:intergenic
TTACGAGGGAGAGTTCAAGT+CGG 0.724697 5_1:+40380553 Msa0730640:CDS
TACGAAGGTGAATGGAAACG+TGG 0.729766 5_1:+40380485 Msa0730640:CDS
GGAGCTCCGATAGAAAACAC+GGG 0.731752 5_1:+40380636 Msa0730640:CDS
ACCGACGGTTGCATGTACGA+AGG 0.732846 5_1:+40380470 Msa0730640:CDS
TTTGAATCCTTATAGCAGCG+GGG 0.739961 5_1:+40383833 Msa0730640:CDS
TACCCCGCCTCATCAAACCG+CGG 0.741865 5_1:+40381424 Msa0730640:CDS
TCGTGCAACAGATAAACCTG+AGG 0.756825 5_1:+40382455 Msa0730640:CDS
GACACCGACGAGCTTCACGG+TGG 0.776234 5_1:+40380343 Msa0730640:CDS
ACGTTTCCTCATCAACACAG+GGG 0.812629 5_1:-40380924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGATTTAATTTATCAAA+TGG + chr5_1:40383031-40383050 Msa0730640:intron 10.0%
!!! TTTGATTTCTAATATATTTT+TGG + chr5_1:40383453-40383472 Msa0730640:intron 10.0%
!!! TTGTATTTTTTTTTTTGAAA+TGG + chr5_1:40384342-40384361 Msa0730640:three_prime_UTR 10.0%
!!! TGTATTTTTTTTTTTGAAAT+GGG + chr5_1:40384343-40384362 Msa0730640:three_prime_UTR 10.0%
!! TAATTATTATATTATTCTTG+AGG + chr5_1:40384552-40384571 Msa0730640:three_prime_UTR 10.0%
!! CTTAAATTCAAATTCTTTAT+TGG + chr5_1:40383286-40383305 Msa0730640:intron 15.0%
!! AAACATGTATATGAAAAAAA+TGG + chr5_1:40384301-40384320 Msa0730640:three_prime_UTR 15.0%
!! AACATGTATATGAAAAAAAT+GGG + chr5_1:40384302-40384321 Msa0730640:three_prime_UTR 15.0%
!!! GTATTTTTTTTTTTGAAATG+GGG + chr5_1:40384344-40384363 Msa0730640:three_prime_UTR 15.0%
!!! ATATGATGGAAAAAAAATAT+AGG + chr5_1:40384408-40384427 Msa0730640:three_prime_UTR 15.0%
!! CAATAACAATAACAAAACAA+GGG - chr5_1:40381243-40381262 None:intergenic 20.0%
!! ACAATAACAATAACAAAACA+AGG - chr5_1:40381244-40381263 None:intergenic 20.0%
!!! TTGTTTTAATGTTGATGTTT+TGG + chr5_1:40381524-40381543 Msa0730640:intron 20.0%
!!! TAAATAATCATTTTTCCACA+TGG - chr5_1:40381935-40381954 None:intergenic 20.0%
!!! ATTTAATTTATCAAATGGCT+GGG + chr5_1:40383036-40383055 Msa0730640:intron 20.0%
!! TTGTAATCTTGAGATATATT+AGG + chr5_1:40383160-40383179 Msa0730640:intron 20.0%
!! TGTAATCTTGAGATATATTA+GGG + chr5_1:40383161-40383180 Msa0730640:intron 20.0%
!! TAAAGAATTTGAATTTAAGC+CGG - chr5_1:40383285-40383304 None:intergenic 20.0%
!! TTCTTTATTGGCATTAAAAT+TGG + chr5_1:40383298-40383317 Msa0730640:intron 20.0%
!! AAAAATCCAGGAAAAATATT+TGG + chr5_1:40384122-40384141 Msa0730640:three_prime_UTR 20.0%
!!! ATTTTTTTAATCTAACCTCA+GGG - chr5_1:40384459-40384478 None:intergenic 20.0%
!! AAGACAAAAATTTCATTACA+TGG - chr5_1:40384607-40384626 None:intergenic 20.0%
!!! TGTTACTTTTTTGAAGTGTT+TGG - chr5_1:40380081-40380100 None:intergenic 25.0%
!! TCATTTTCGAATATTTTCTC+CGG - chr5_1:40380181-40380200 None:intergenic 25.0%
!! ATTTTCCTAGGATTTGTATT+TGG + chr5_1:40380996-40381015 Msa0730640:CDS 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG + chr5_1:40380997-40381016 Msa0730640:CDS 25.0%
!!! TTTGATGCTTAATTTGCAAT+TGG + chr5_1:40381198-40381217 Msa0730640:CDS 25.0%
!!! TTGATGCTTAATTTGCAATT+GGG + chr5_1:40381199-40381218 Msa0730640:CDS 25.0%
!! ATTATATGTTGGCTATATGT+GGG + chr5_1:40381702-40381721 Msa0730640:CDS 25.0%
! GATATATTATTGTAGCTGTA+TGG + chr5_1:40382294-40382313 Msa0730640:intron 25.0%
! AAATCAAATCGTCTATGAAT+TGG - chr5_1:40382417-40382436 None:intergenic 25.0%
! AAACTTACTTAATAAGATCC+TGG - chr5_1:40382554-40382573 None:intergenic 25.0%
! TTCCTTAAAATTAGTGTAGA+TGG + chr5_1:40383002-40383021 Msa0730640:intron 25.0%
!! ATCCATCTACACTAATTTTA+AGG - chr5_1:40383007-40383026 None:intergenic 25.0%
!! GATTTAATTTATCAAATGGC+TGG + chr5_1:40383035-40383054 Msa0730640:intron 25.0%
!! TAAAAGATTTCAACTGATTC+AGG - chr5_1:40383114-40383133 None:intergenic 25.0%
! ATCTCTTGAAAATATCAGAA+AGG + chr5_1:40383233-40383252 Msa0730640:intron 25.0%
! ATTATGTTGGCAAATTAAGT+GGG + chr5_1:40383362-40383381 Msa0730640:intron 25.0%
! CAATCAATGAATTTATTGTC+AGG - chr5_1:40383479-40383498 None:intergenic 25.0%
! TCAACAATCTTTAACAGTTT+AGG - chr5_1:40383646-40383665 None:intergenic 25.0%
! TCTTCAGAAAATCATTAATC+AGG + chr5_1:40383727-40383746 Msa0730640:intron 25.0%
!! TATGATTGCGTTCTATATTT+TGG + chr5_1:40383861-40383880 Msa0730640:CDS 25.0%
!! ATGATTGCGTTCTATATTTT+GGG + chr5_1:40383862-40383881 Msa0730640:CDS 25.0%
! GAAGAATATTCATTGAAGAT+TGG + chr5_1:40384018-40384037 Msa0730640:CDS 25.0%
!! AAACTTCCAAATATTTTTCC+TGG - chr5_1:40384131-40384150 None:intergenic 25.0%
!!! TTTTTTTTTTTGAAATGGGG+TGG + chr5_1:40384347-40384366 Msa0730640:three_prime_UTR 25.0%
!!! TTTTTTTTTTGAAATGGGGT+GGG + chr5_1:40384348-40384367 Msa0730640:three_prime_UTR 25.0%
!! GGGACTTATTTAATTTATTG+TGG + chr5_1:40384368-40384387 Msa0730640:three_prime_UTR 25.0%
! AATTTATTGTGGTTACCAAT+AGG + chr5_1:40384379-40384398 Msa0730640:three_prime_UTR 25.0%
! TGGAAAAAAAATATAGGAAG+AGG + chr5_1:40384414-40384433 Msa0730640:three_prime_UTR 25.0%
! GGAAAAAAAATATAGGAAGA+GGG + chr5_1:40384415-40384434 Msa0730640:three_prime_UTR 25.0%
! GAAAAAAAATATAGGAAGAG+GGG + chr5_1:40384416-40384435 Msa0730640:three_prime_UTR 25.0%
!!! CATTTTTTTAATCTAACCTC+AGG - chr5_1:40384460-40384479 None:intergenic 25.0%
! GGTTAGATTAAAAAAATGCT+TGG + chr5_1:40384462-40384481 Msa0730640:three_prime_UTR 25.0%
! AATGTACAGTTGTTATACAA+AGG + chr5_1:40384504-40384523 Msa0730640:three_prime_UTR 25.0%
! ATGTACAGTTGTTATACAAA+GGG + chr5_1:40384505-40384524 Msa0730640:three_prime_UTR 25.0%
! ATGAAGATTCAACATGGTTT+TGG + chr5_1:40380875-40380894 Msa0730640:CDS 30.0%
! TGAATGAGAAGAATTTTCCT+AGG + chr5_1:40380984-40381003 Msa0730640:CDS 30.0%
ATTTGTATTTGGGAATCTGA+AGG + chr5_1:40381007-40381026 Msa0730640:CDS 30.0%
!! TGATATTGTTGATAATGTCG+AGG + chr5_1:40381051-40381070 Msa0730640:CDS 30.0%
!! CTGGTCAAACTATTTCTAAA+GGG + chr5_1:40381161-40381180 Msa0730640:CDS 30.0%
!! TGATGCTTAATTTGCAATTG+GGG + chr5_1:40381200-40381219 Msa0730640:CDS 30.0%
!! TTAATTTGCAATTGGGGATT+AGG + chr5_1:40381206-40381225 Msa0730640:CDS 30.0%
TCATGTTATGTGTAGATACA+CGG + chr5_1:40381304-40381323 Msa0730640:intron 30.0%
GAGTTATACCTAAAAACAAC+CGG - chr5_1:40381473-40381492 None:intergenic 30.0%
!!! TTAATGTTGATGTTTTGGTG+AGG + chr5_1:40381529-40381548 Msa0730640:intron 30.0%
GACCTGTGTTGAAATTAATT+CGG + chr5_1:40381553-40381572 Msa0730640:intron 30.0%
ACCTGTGTTGAAATTAATTC+GGG + chr5_1:40381554-40381573 Msa0730640:intron 30.0%
! TGAAATTAATTCGGGTGTTT+TGG + chr5_1:40381562-40381581 Msa0730640:intron 30.0%
!! GTTTTGGATGATTTTTGGAT+TGG + chr5_1:40381578-40381597 Msa0730640:intron 30.0%
TTTGATTCTTCAGACATTTG+AGG + chr5_1:40381654-40381673 Msa0730640:intron 30.0%
! GATTATATGTTGGCTATATG+TGG + chr5_1:40381701-40381720 Msa0730640:CDS 30.0%
! TTATATGTTGGCTATATGTG+GGG + chr5_1:40381703-40381722 Msa0730640:CDS 30.0%
AATCATGAATCTGTCATCTT+GGG - chr5_1:40381786-40381805 None:intergenic 30.0%
TAATCATGAATCTGTCATCT+TGG - chr5_1:40381787-40381806 None:intergenic 30.0%
!! GTGTCTTGTTGAATTTTACA+CGG + chr5_1:40381871-40381890 Msa0730640:intron 30.0%
!! TGTCTTGTTGAATTTTACAC+GGG + chr5_1:40381872-40381891 Msa0730640:intron 30.0%
TAAGAACAAAACATACCATG+TGG + chr5_1:40381917-40381936 Msa0730640:intron 30.0%
! ATTTCTGACTTCCAACTTTT+AGG + chr5_1:40382148-40382167 Msa0730640:intron 30.0%
TCCAATAACAATGAAAAGTC+AGG - chr5_1:40382345-40382364 None:intergenic 30.0%
TGTTATTGGAAAATCAGATC+CGG + chr5_1:40382355-40382374 Msa0730640:intron 30.0%
!! CATAGACGATTTGATTTGAA+AGG + chr5_1:40382420-40382439 Msa0730640:CDS 30.0%
AATACGTATCTGACAAGTTA+TGG + chr5_1:40382636-40382655 Msa0730640:intron 30.0%
CTTGGAAAACGAGAAAATTA+TGG + chr5_1:40382696-40382715 Msa0730640:CDS 30.0%
!! AATTATGGACTACAGTCTTT+TGG + chr5_1:40382711-40382730 Msa0730640:CDS 30.0%
TGACAACACTTATGACAAAA+TGG + chr5_1:40382753-40382772 Msa0730640:CDS 30.0%
GACAACACTTATGACAAAAT+GGG + chr5_1:40382754-40382773 Msa0730640:CDS 30.0%
ACAACACTTATGACAAAATG+GGG + chr5_1:40382755-40382774 Msa0730640:CDS 30.0%
!! AAGCTTTTCCAATTTAGCTT+TGG - chr5_1:40383080-40383099 None:intergenic 30.0%
ATCAGAAAGGAATAAGTTGT+AGG + chr5_1:40383246-40383265 Msa0730640:intron 30.0%
! GTAAGTAGTTTGCATTATGT+TGG + chr5_1:40383349-40383368 Msa0730640:intron 30.0%
CATTATGTTGGCAAATTAAG+TGG + chr5_1:40383361-40383380 Msa0730640:intron 30.0%
AAAGAACATGAATGCAAAGA+AGG - chr5_1:40383521-40383540 None:intergenic 30.0%
TTGTCTGTATATGGTATATG+GGG - chr5_1:40383553-40383572 None:intergenic 30.0%
GTTGTCTGTATATGGTATAT+GGG - chr5_1:40383554-40383573 None:intergenic 30.0%
TGTTGTCTGTATATGGTATA+TGG - chr5_1:40383555-40383574 None:intergenic 30.0%
CTGAAATTGTTGTCTGTATA+TGG - chr5_1:40383562-40383581 None:intergenic 30.0%
CTTAATACATGTCACGAAAT+TGG - chr5_1:40383694-40383713 None:intergenic 30.0%
TTTCGTGACATGTATTAAGT+AGG + chr5_1:40383695-40383714 Msa0730640:intron 30.0%
AGAAAATCATTAATCAGGCT+AGG + chr5_1:40383732-40383751 Msa0730640:intron 30.0%
!! GATTTTGATCAATACACCAA+TGG + chr5_1:40383798-40383817 Msa0730640:CDS 30.0%
! TGATTGCGTTCTATATTTTG+GGG + chr5_1:40383863-40383882 Msa0730640:CDS 30.0%
ATCCAAAGCTATACTCAAAA+AGG + chr5_1:40383979-40383998 Msa0730640:CDS 30.0%
!!! AACCTTTTTGAGTATAGCTT+TGG - chr5_1:40383984-40384003 None:intergenic 30.0%
! AAAAGGTTTCGAGATTTTGT+TGG + chr5_1:40383996-40384015 Msa0730640:CDS 30.0%
! TATCCTCATTTTGTACTAAC+TGG - chr5_1:40384054-40384073 None:intergenic 30.0%
GATAAAATATCTTCTCCTGA+AGG + chr5_1:40384070-40384089 Msa0730640:three_prime_UTR 30.0%
TTTGTGATCATCATGATTCA+TGG - chr5_1:40384105-40384124 None:intergenic 30.0%
CCATCATATTCATATCCTAT+TGG - chr5_1:40384397-40384416 None:intergenic 30.0%
CCAATAGGATATGAATATGA+TGG + chr5_1:40384394-40384413 Msa0730640:three_prime_UTR 30.0%
TAGAAAGCAAAGAAGAGAAG+AGG - chr5_1:40380038-40380057 None:intergenic 35.0%
TTCGAAAATGAGTGATACAG+TGG + chr5_1:40380190-40380209 Msa0730640:exon 35.0%
AAGAATGGGAATGAGTATGT+TGG + chr5_1:40380746-40380765 Msa0730640:CDS 35.0%
TTCATAACACCTTGTCCTTT+CGG - chr5_1:40380860-40380879 None:intergenic 35.0%
! GGTGTTATGAAGATTCAACA+TGG + chr5_1:40380869-40380888 Msa0730640:CDS 35.0%
!!! AAGATTCAACATGGTTTTGG+TGG + chr5_1:40380878-40380897 Msa0730640:CDS 35.0%
!!! AGATTCAACATGGTTTTGGT+GGG + chr5_1:40380879-40380898 Msa0730640:CDS 35.0%
TCTGTTGATACTACTGTTAG+TGG + chr5_1:40380950-40380969 Msa0730640:CDS 35.0%
ATACTACTGTTAGTGGTAGA+GGG + chr5_1:40380957-40380976 Msa0730640:CDS 35.0%
GATTCCCAAATACAAATCCT+AGG - chr5_1:40381004-40381023 None:intergenic 35.0%
! CCTTTAGAAATAGTTTGACC+AGG - chr5_1:40381163-40381182 None:intergenic 35.0%
!! CCTGGTCAAACTATTTCTAA+AGG + chr5_1:40381160-40381179 Msa0730640:CDS 35.0%
TTATGTGTAGATACACGGTT+GGG + chr5_1:40381309-40381328 Msa0730640:intron 35.0%
!! ACCTAGTGATTTTGATCCTA+AGG + chr5_1:40381361-40381380 Msa0730640:CDS 35.0%
TCCTTAGGATCAAAATCACT+AGG - chr5_1:40381365-40381384 None:intergenic 35.0%
!!! ATTACTGTCCGGTTGTTTTT+AGG + chr5_1:40381462-40381481 Msa0730640:CDS 35.0%
ACCCGAATTAATTTCAACAC+AGG - chr5_1:40381558-40381577 None:intergenic 35.0%
! TGATCCTGCTGATTATATGT+TGG + chr5_1:40381691-40381710 Msa0730640:CDS 35.0%
ATAGCCAACATATAATCAGC+AGG - chr5_1:40381698-40381717 None:intergenic 35.0%
! AGTGAAGAAATCTGAAGTCA+AGG + chr5_1:40381811-40381830 Msa0730640:CDS 35.0%
! TGTTGAATTTTACACGGGTT+TGG + chr5_1:40381877-40381896 Msa0730640:intron 35.0%
! GTTGAATTTTACACGGGTTT+GGG + chr5_1:40381878-40381897 Msa0730640:intron 35.0%
CTTACAAAACCTAAGTTGTC+TGG - chr5_1:40382008-40382027 None:intergenic 35.0%
!! CAGACAACTTAGGTTTTGTA+AGG + chr5_1:40382006-40382025 Msa0730640:intron 35.0%
!! AACTTAGGTTTTGTAAGGTC+TGG + chr5_1:40382011-40382030 Msa0730640:intron 35.0%
GTAAGAATCTACGTTTAACC+GGG - chr5_1:40382062-40382081 None:intergenic 35.0%
GGTAAGAATCTACGTTTAAC+CGG - chr5_1:40382063-40382082 None:intergenic 35.0%
! TGCGTAACTTGCGTTATAAA+AGG - chr5_1:40382084-40382103 None:intergenic 35.0%
GTTACGCAATTACAAGTCTT+TGG + chr5_1:40382096-40382115 Msa0730640:intron 35.0%
GTCCAAATATGAGAATTCAC+TGG + chr5_1:40382208-40382227 Msa0730640:CDS 35.0%
CACCAGTGAATTCTCATATT+TGG - chr5_1:40382213-40382232 None:intergenic 35.0%
TCACTGGTGACAAAATTCTT+TGG + chr5_1:40382224-40382243 Msa0730640:CDS 35.0%
CACTGGTGACAAAATTCTTT+GGG + chr5_1:40382225-40382244 Msa0730640:CDS 35.0%
ACTGGTGACAAAATTCTTTG+GGG + chr5_1:40382226-40382245 Msa0730640:CDS 35.0%
GTACATTGTGTGAAACCTAT+TGG + chr5_1:40382248-40382267 Msa0730640:CDS 35.0%
! ATCTATCGATCCATACCTTT+TGG - chr5_1:40382277-40382296 None:intergenic 35.0%
! GCCTGACTTTTCATTGTTAT+TGG + chr5_1:40382341-40382360 Msa0730640:intron 35.0%
GATTTGAAAGGATCTTCACA+TGG + chr5_1:40382432-40382451 Msa0730640:CDS 35.0%
GAAACACATAGTTCAGATCA+AGG - chr5_1:40382512-40382531 None:intergenic 35.0%
TGTTTCGTGTACAACGAAAT+TGG + chr5_1:40382526-40382545 Msa0730640:CDS 35.0%
CGTATTCTATAACGATTCAC+TGG - chr5_1:40382622-40382641 None:intergenic 35.0%
TGTTGTCATCACGAAAATGA+AGG - chr5_1:40382741-40382760 None:intergenic 35.0%
AACACTCACTATAGAGCATA+TGG + chr5_1:40382813-40382832 Msa0730640:intron 35.0%
CACTATAGAGCATATGGTTA+TGG + chr5_1:40382819-40382838 Msa0730640:intron 35.0%
AGAATCCTGATTGCCTAAAA+GGG - chr5_1:40382881-40382900 None:intergenic 35.0%
AAGAATCCTGATTGCCTAAA+AGG - chr5_1:40382882-40382901 None:intergenic 35.0%
ACTTGCAACCAAAGCTAAAT+TGG + chr5_1:40383069-40383088 Msa0730640:intron 35.0%
AGCTAAATTGGAAAAGCTTC+AGG + chr5_1:40383081-40383100 Msa0730640:intron 35.0%
GCTAAATTGGAAAAGCTTCA+GGG + chr5_1:40383082-40383101 Msa0730640:intron 35.0%
CTAAATTGGAAAAGCTTCAG+GGG + chr5_1:40383083-40383102 Msa0730640:intron 35.0%
!! TTAAGTGGGTATAGTTTTGC+AGG + chr5_1:40383376-40383395 Msa0730640:intron 35.0%
TTGCAGGAAATAGTTGTTTG+TGG + chr5_1:40383392-40383411 Msa0730640:intron 35.0%
TGCAGGAAATAGTTGTTTGT+GGG + chr5_1:40383393-40383412 Msa0730640:intron 35.0%
TTTGATCAATACACCAATGG+TGG + chr5_1:40383801-40383820 Msa0730640:CDS 35.0%
CATTTGAATCCTTATAGCAG+CGG + chr5_1:40383831-40383850 Msa0730640:CDS 35.0%
ATTTGAATCCTTATAGCAGC+GGG + chr5_1:40383832-40383851 Msa0730640:CDS 35.0%
! TGGGGTTATCGATATTTTAC+AGG + chr5_1:40383881-40383900 Msa0730640:CDS 35.0%
TGACCAGTTAGTACAAAATG+AGG + chr5_1:40384048-40384067 Msa0730640:three_prime_UTR 35.0%
! TCATGGCATTTTTAACCTTC+AGG - chr5_1:40384088-40384107 None:intergenic 35.0%
CATGATGATCACAAAAATCC+AGG + chr5_1:40384110-40384129 Msa0730640:three_prime_UTR 35.0%
CTGATGAACAGTAAACTCTA+AGG - chr5_1:40384177-40384196 None:intergenic 35.0%
TTCATCAGATCACTGTAAGT+GGG + chr5_1:40384189-40384208 Msa0730640:three_prime_UTR 35.0%
AACTCAAGTGAGATTCTTTG+AGG - chr5_1:40384216-40384235 None:intergenic 35.0%
TCAAAGAATCTCACTTGAGT+TGG + chr5_1:40384215-40384234 Msa0730640:three_prime_UTR 35.0%
!!! CTTGAGTTGGTGTTGTTTTT+TGG + chr5_1:40384228-40384247 Msa0730640:three_prime_UTR 35.0%
TACAGTTGTTATACAAAGGG+TGG + chr5_1:40384508-40384527 Msa0730640:three_prime_UTR 35.0%
GTGTTTGGAGAAAAACGAGT+GGG - chr5_1:40380066-40380085 None:intergenic 40.0%
AGTGTTTGGAGAAAAACGAG+TGG - chr5_1:40380067-40380086 None:intergenic 40.0%
! TCAATGCTCAGTGCATTTTC+CGG - chr5_1:40380151-40380170 None:intergenic 40.0%
GAAGAACAACATTCCTGAAC+CGG + chr5_1:40380247-40380266 Msa0730640:CDS 40.0%
!! GAAGGTTTGTTTTCCTTCTC+CGG - chr5_1:40380269-40380288 None:intergenic 40.0%
! CAGGGAAAGGGAAATTTTCA+TGG + chr5_1:40380516-40380535 Msa0730640:CDS 40.0%
CGAACGGTGATTTATACGAA+GGG + chr5_1:40380678-40380697 Msa0730640:CDS 40.0%
GACGTTACGTTTGGAAGAAT+GGG + chr5_1:40380732-40380751 Msa0730640:CDS 40.0%
! GGAATGAGTATGTTGGTGAA+TGG + chr5_1:40380753-40380772 Msa0730640:CDS 40.0%
! TATGTTGGTGAATGGCGTAA+CGG + chr5_1:40380761-40380780 Msa0730640:CDS 40.0%
! GGTTCGTTAGTTTGGGTTAA+CGG + chr5_1:40380800-40380819 Msa0730640:CDS 40.0%
!!! ATGGTTTTGGTGGGTTTGTT+TGG + chr5_1:40380888-40380907 Msa0730640:CDS 40.0%
AACGTTTCCTCATCAACACA+GGG - chr5_1:40380928-40380947 None:intergenic 40.0%
GATACTACTGTTAGTGGTAG+AGG + chr5_1:40380956-40380975 Msa0730640:CDS 40.0%
!! TCCTTGTTGTTTCTCTTCTG+AGG + chr5_1:40381129-40381148 Msa0730640:CDS 40.0%
ACCTCAGAAGAGAAACAACA+AGG - chr5_1:40381133-40381152 None:intergenic 40.0%
GTTATGTGTAGATACACGGT+TGG + chr5_1:40381308-40381327 Msa0730640:intron 40.0%
TTGATCCTAAGGAGAAGTTC+TGG + chr5_1:40381372-40381391 Msa0730640:CDS 40.0%
GTAATCTTGGATCCTTCACT+CGG - chr5_1:40381407-40381426 None:intergenic 40.0%
TCGATGGAAAGATTACTGTC+CGG + chr5_1:40381451-40381470 Msa0730640:CDS 40.0%
!! CGGGTGTTTTGGATGATTTT+TGG + chr5_1:40381573-40381592 Msa0730640:intron 40.0%
! ACATTTGAGGAAGCTGTTTC+AGG + chr5_1:40381667-40381686 Msa0730640:CDS 40.0%
CGATTTGACTAACAGTTGAC+TGG - chr5_1:40381977-40381996 None:intergenic 40.0%
GTTAGTAGACCAGACAACTT+AGG + chr5_1:40381996-40382015 Msa0730640:intron 40.0%
TTGTCGCTATTCGAATATCC+CGG + chr5_1:40382041-40382060 Msa0730640:intron 40.0%
!! CCAACTTTTAGGTGCTTCTT+CGG + chr5_1:40382159-40382178 Msa0730640:intron 40.0%
CATTGTGTGAAACCTATTGG+AGG + chr5_1:40382251-40382270 Msa0730640:CDS 40.0%
ACAATGAAAAGTCAGGCACA+GGG - chr5_1:40382338-40382357 None:intergenic 40.0%
AACAATGAAAAGTCAGGCAC+AGG - chr5_1:40382339-40382358 None:intergenic 40.0%
TCAGATCCGGTTTATTGTGA+TGG + chr5_1:40382368-40382387 Msa0730640:intron 40.0%
CAGATCCGGTTTATTGTGAT+GGG + chr5_1:40382369-40382388 Msa0730640:intron 40.0%
GATTGCCCATCACAATAAAC+CGG - chr5_1:40382377-40382396 None:intergenic 40.0%
GTTTCATCAATCTCATCCTC+AGG - chr5_1:40382474-40382493 None:intergenic 40.0%
GTTCAGATCAAGGTCTTTGA+GGG - chr5_1:40382502-40382521 None:intergenic 40.0%
AGTTCAGATCAAGGTCTTTG+AGG - chr5_1:40382503-40382522 None:intergenic 40.0%
TGTACAACGAAATTGGTACC+AGG + chr5_1:40382533-40382552 Msa0730640:CDS 40.0%
TGTGTTCCAGACAAATTGAG+CGG + chr5_1:40382662-40382681 Msa0730640:intron 40.0%
!! ATGGACTACAGTCTTTTGGT+TGG + chr5_1:40382715-40382734 Msa0730640:CDS 40.0%
ATACCAGTGCGTAGAAGAAA+AGG - chr5_1:40382787-40382806 None:intergenic 40.0%
! GCGATATTCTTTCCCCTTTT+AGG + chr5_1:40382865-40382884 Msa0730640:intron 40.0%
GAATCCTGATTGCCTAAAAG+GGG - chr5_1:40382880-40382899 None:intergenic 40.0%
GATAGGGATCGAGTTAAATC+TGG + chr5_1:40382955-40382974 Msa0730640:CDS 40.0%
TATATTAGGGCTTGTGCTGT+TGG + chr5_1:40383174-40383193 Msa0730640:intron 40.0%
CGCTGCTATAAGGATTCAAA+TGG - chr5_1:40383833-40383852 None:intergenic 40.0%
TTTGAATCCTTATAGCAGCG+GGG + chr5_1:40383833-40383852 Msa0730640:CDS 40.0%
TTGAAACCCACTTGCAAAAG+AGG + chr5_1:40384149-40384168 Msa0730640:three_prime_UTR 40.0%
TGAAACCCACTTGCAAAAGA+GGG + chr5_1:40384150-40384169 Msa0730640:three_prime_UTR 40.0%
GTTCATCAGATCACTGTAAG+TGG + chr5_1:40384188-40384207 Msa0730640:three_prime_UTR 40.0%
TCATCAGATCACTGTAAGTG+GGG + chr5_1:40384190-40384209 Msa0730640:three_prime_UTR 40.0%
CCAGCAAATCATCATCATCA+TGG - chr5_1:40384273-40384292 None:intergenic 40.0%
! CCATGATGATGATGATTTGC+TGG + chr5_1:40384270-40384289 Msa0730640:three_prime_UTR 40.0%
!! TGATGATGATTTGCTGGATC+AGG + chr5_1:40384276-40384295 Msa0730640:three_prime_UTR 40.0%
!! GATGATGATTTGCTGGATCA+GGG + chr5_1:40384277-40384296 Msa0730640:three_prime_UTR 40.0%
AAATATAGGAAGAGGGGTGA+AGG + chr5_1:40384422-40384441 Msa0730640:three_prime_UTR 40.0%
AATATAGGAAGAGGGGTGAA+GGG + chr5_1:40384423-40384442 Msa0730640:three_prime_UTR 40.0%
AAGGGAAAATTGTTTCCCTG+AGG + chr5_1:40384441-40384460 Msa0730640:three_prime_UTR 40.0%
GTTGTTATACAAAGGGTGGA+TGG + chr5_1:40384512-40384531 Msa0730640:three_prime_UTR 40.0%
AATAAAAACAACCTCGCCGC+CGG + chr5_1:40380114-40380133 Msa0730640:five_prime_UTR 45.0%
! TTCGAATATTTTCTCCGGCG+AGG - chr5_1:40380176-40380195 None:intergenic 45.0%
GGTGAACGATGAAGTTGTTG+AGG + chr5_1:40380211-40380230 Msa0730640:CDS 45.0%
! TTGTTTTCCTTCTCCGGTTC+AGG - chr5_1:40380263-40380282 None:intergenic 45.0%
GGAAAACAAACCTTCTCCAC+CGG + chr5_1:40380274-40380293 Msa0730640:CDS 45.0%
CTCAACAACGGATCTACCAT+CGG - chr5_1:40380372-40380391 None:intergenic 45.0%
!! CGGAAGTACTCTCTCAACAA+CGG - chr5_1:40380384-40380403 None:intergenic 45.0%
!! GTTGAGAGAGTACTTCCGAA+CGG + chr5_1:40380386-40380405 Msa0730640:CDS 45.0%
TTCTATGCCGGAAGTTTCTC+CGG + chr5_1:40380413-40380432 Msa0730640:CDS 45.0%
AGATACTTCCCGGATCCATT+CGG - chr5_1:40380446-40380465 None:intergenic 45.0%
!! ATGGATCCGGGAAGTATCTA+TGG + chr5_1:40380447-40380466 Msa0730640:CDS 45.0%
GTTGCATGTACGAAGGTGAA+TGG + chr5_1:40380477-40380496 Msa0730640:CDS 45.0%
TACGAAGGTGAATGGAAACG+TGG + chr5_1:40380485-40380504 Msa0730640:CDS 45.0%
TGGAAACGTGGAAAAGCTTC+AGG + chr5_1:40380497-40380516 Msa0730640:CDS 45.0%
GGAAACGTGGAAAAGCTTCA+GGG + chr5_1:40380498-40380517 Msa0730640:CDS 45.0%
GTGGAAAAGCTTCAGGGAAA+GGG + chr5_1:40380504-40380523 Msa0730640:CDS 45.0%
! GGGAAATTTTCATGGCCTTC+AGG + chr5_1:40380524-40380543 Msa0730640:CDS 45.0%
TTACGAGGGAGAGTTCAAGT+CGG + chr5_1:40380553-40380572 Msa0730640:CDS 45.0%
GAAGGATTCGGAACATTCGT+TGG + chr5_1:40380584-40380603 Msa0730640:CDS 45.0%
TGGAGCTCCGATAGAAAACA+CGG + chr5_1:40380635-40380654 Msa0730640:CDS 45.0%
TCCGATAGAAAACACGGGTT+CGG + chr5_1:40380641-40380660 Msa0730640:CDS 45.0%
! ACCGAACCCGTGTTTTCTAT+CGG - chr5_1:40380645-40380664 None:intergenic 45.0%
GCGAACGGTGATTTATACGA+AGG + chr5_1:40380677-40380696 Msa0730640:CDS 45.0%
ACGGTGATTTATACGAAGGG+TGG + chr5_1:40380681-40380700 Msa0730640:CDS 45.0%
GTGATTTATACGAAGGGTGG+TGG + chr5_1:40380684-40380703 Msa0730640:CDS 45.0%
! TGGAAGCGTAACGTTCAAGA+TGG + chr5_1:40380704-40380723 Msa0730640:CDS 45.0%
CGTAACGTTCAAGATGGTCA+AGG + chr5_1:40380710-40380729 Msa0730640:CDS 45.0%
ATGGTCAAGGACGTTACGTT+TGG + chr5_1:40380723-40380742 Msa0730640:CDS 45.0%
GGACGTTACGTTTGGAAGAA+TGG + chr5_1:40380731-40380750 Msa0730640:CDS 45.0%
TAACGGCGTTATATCTGGGA+AGG + chr5_1:40380778-40380797 Msa0730640:CDS 45.0%
AACGGCGTTATATCTGGGAA+GGG + chr5_1:40380779-40380798 Msa0730640:CDS 45.0%
! TGGGAAGGGTTCGTTAGTTT+GGG + chr5_1:40380793-40380812 Msa0730640:CDS 45.0%
TTGGGTTAACGGAAACCGTT+TGG + chr5_1:40380811-40380830 Msa0730640:CDS 45.0%
GTTAACGGAAACCGTTTGGA+GGG + chr5_1:40380815-40380834 Msa0730640:CDS 45.0%
AAACCGTTTGGAGGGTTTGT+GGG + chr5_1:40380823-40380842 Msa0730640:CDS 45.0%
AATGGTGTTCCGAAAGGACA+AGG + chr5_1:40380848-40380867 Msa0730640:CDS 45.0%
!! ATTTTGCCCCTGTGTTGATG+AGG + chr5_1:40380918-40380937 Msa0730640:CDS 45.0%
ACGTTTCCTCATCAACACAG+GGG - chr5_1:40380927-40380946 None:intergenic 45.0%
GAACGTTTCCTCATCAACAC+AGG - chr5_1:40380929-40380948 None:intergenic 45.0%
! GCTTCGATGTTTTATCGCGA+TGG + chr5_1:40381073-40381092 Msa0730640:CDS 45.0%
GGATGCTTTCGAAACTCATC+AGG - chr5_1:40381112-40381131 None:intergenic 45.0%
!! TCTTCTGAGGTTAAGAGACC+TGG + chr5_1:40381142-40381161 Msa0730640:CDS 45.0%
CTTGTCCAGAACTTCTCCTT+AGG - chr5_1:40381380-40381399 None:intergenic 45.0%
!! CTAAGGAGAAGTTCTGGACA+AGG + chr5_1:40381378-40381397 Msa0730640:CDS 45.0%
ATCTTTCCATCGAAACTCCG+CGG - chr5_1:40381444-40381463 None:intergenic 45.0%
CTTAGAGAACTTTCCTCTCC+CGG + chr5_1:40381734-40381753 Msa0730640:CDS 45.0%
TTAGAGAACTTTCCTCTCCC+GGG + chr5_1:40381735-40381754 Msa0730640:CDS 45.0%
!! AAAACACTTCCGCTTTTCCC+GGG - chr5_1:40381755-40381774 None:intergenic 45.0%
!! GAAAACACTTCCGCTTTTCC+CGG - chr5_1:40381756-40381775 None:intergenic 45.0%
!! CCGAAGAAGCACCTAAAAGT+TGG - chr5_1:40382162-40382181 None:intergenic 45.0%
GAAACCTATTGGAGGCCAAA+AGG + chr5_1:40382259-40382278 Msa0730640:CDS 45.0%
! CATACCTTTTGGCCTCCAAT+AGG - chr5_1:40382266-40382285 None:intergenic 45.0%
CTATTGGAGGCCAAAAGGTA+TGG + chr5_1:40382264-40382283 Msa0730640:intron 45.0%
TCGTGCAACAGATAAACCTG+AGG + chr5_1:40382455-40382474 Msa0730640:CDS 45.0%
GTGTTCCAGACAAATTGAGC+GGG + chr5_1:40382663-40382682 Msa0730640:intron 45.0%
ACAATCCCGCTCAATTTGTC+TGG - chr5_1:40382671-40382690 None:intergenic 45.0%
! TCACCTTTTCTTCTACGCAC+TGG + chr5_1:40382781-40382800 Msa0730640:CDS 45.0%
! CTTTCCCCTTTTAGGCAATC+AGG + chr5_1:40382873-40382892 Msa0730640:intron 45.0%
CATACTGAGAAGTTCATGCG+TGG + chr5_1:40382904-40382923 Msa0730640:CDS 45.0%
TCGAAGCAGAGTTGCAAGAT+AGG + chr5_1:40382938-40382957 Msa0730640:CDS 45.0%
CGAAGCAGAGTTGCAAGATA+GGG + chr5_1:40382939-40382958 Msa0730640:CDS 45.0%
GGGATCGAGTTAAATCTGGA+AGG + chr5_1:40382959-40382978 Msa0730640:CDS 45.0%
TTTAAGCCGGCATGTGTTAC+AGG - chr5_1:40383272-40383291 None:intergenic 45.0%
TTTCTGTTACGCTGTGTGTG+TGG + chr5_1:40383583-40383602 Msa0730640:intron 45.0%
TTCTGCTCTTGCTGGCATAT+TGG - chr5_1:40383760-40383779 None:intergenic 45.0%
ATATGCCAGCAAGAGCAGAA+CGG + chr5_1:40383760-40383779 Msa0730640:CDS 45.0%
! CAAATGGCTGATTCCACCAT+TGG - chr5_1:40383817-40383836 None:intergenic 45.0%
! AAGGTCCCTCTTTTGCAAGT+GGG - chr5_1:40384158-40384177 None:intergenic 45.0%
! TAAGGTCCCTCTTTTGCAAG+TGG - chr5_1:40384159-40384178 None:intergenic 45.0%
!! ACTGAGCATTGATTCCTCGC+CGG + chr5_1:40380159-40380178 Msa0730640:five_prime_UTR 50.0%
CAACATTCCTGAACCGGAGA+AGG + chr5_1:40380253-40380272 Msa0730640:CDS 50.0%
AAACAAACCTTCTCCACCGG+CGG + chr5_1:40380277-40380296 Msa0730640:CDS 50.0%
TTCTACCTCCGCCTTGTGAA+CGG - chr5_1:40380319-40380338 None:intergenic 50.0%
CCGGCATAGAAATCTCCGTT+CGG - chr5_1:40380404-40380423 None:intergenic 50.0%
CCGAACGGAGATTTCTATGC+CGG + chr5_1:40380401-40380420 Msa0730640:CDS 50.0%
TACGTTGCCGGAGAAACTTC+CGG - chr5_1:40380423-40380442 None:intergenic 50.0%
GTCGGTCCATAGATACTTCC+CGG - chr5_1:40380456-40380475 None:intergenic 50.0%
!! GGGAAGTATCTATGGACCGA+CGG + chr5_1:40380455-40380474 Msa0730640:CDS 50.0%
ACCTTCGTACATGCAACCGT+CGG - chr5_1:40380474-40380493 None:intergenic 50.0%
CGTGGAAAAGCTTCAGGGAA+AGG + chr5_1:40380503-40380522 Msa0730640:CDS 50.0%
TACGAGGGAGAGTTCAAGTC+GGG + chr5_1:40380554-40380573 Msa0730640:CDS 50.0%
AGAGTTCAAGTCGGGTCGAA+TGG + chr5_1:40380562-40380581 Msa0730640:CDS 50.0%
TTCAAGTCGGGTCGAATGGA+AGG + chr5_1:40380566-40380585 Msa0730640:CDS 50.0%
TCGGGTCGAATGGAAGGATT+CGG + chr5_1:40380572-40380591 Msa0730640:CDS 50.0%
GGAACATTCGTTGGATCCGA+CGG + chr5_1:40380593-40380612 Msa0730640:CDS 50.0%
TCCGACGGTGATACATATCG+CGG + chr5_1:40380608-40380627 Msa0730640:CDS 50.0%
GTGATACATATCGCGGGTCA+TGG + chr5_1:40380615-40380634 Msa0730640:CDS 50.0%
GGAGCTCCGATAGAAAACAC+GGG + chr5_1:40380636-40380655 Msa0730640:CDS 50.0%
GGTCAGAAACGTTACGCGAA+CGG + chr5_1:40380662-40380681 Msa0730640:CDS 50.0%
TGGCGTAACGGCGTTATATC+TGG + chr5_1:40380773-40380792 Msa0730640:CDS 50.0%
GGCGTAACGGCGTTATATCT+GGG + chr5_1:40380774-40380793 Msa0730640:CDS 50.0%
CTGGGAAGGGTTCGTTAGTT+TGG + chr5_1:40380792-40380811 Msa0730640:CDS 50.0%
GGTTAACGGAAACCGTTTGG+AGG + chr5_1:40380814-40380833 Msa0730640:CDS 50.0%
GAAACCGTTTGGAGGGTTTG+TGG + chr5_1:40380822-40380841 Msa0730640:CDS 50.0%
TCTCCCACAAACCCTCCAAA+CGG - chr5_1:40380829-40380848 None:intergenic 50.0%
TTGGAGGGTTTGTGGGAGAA+TGG + chr5_1:40380830-40380849 Msa0730640:CDS 50.0%
TGGGAGAATGGTGTTCCGAA+AGG + chr5_1:40380842-40380861 Msa0730640:CDS 50.0%
TGGGAATCTGAAGGTGAAGC+TGG + chr5_1:40381016-40381035 Msa0730640:CDS 50.0%
GTGTAGATACACGGTTGGGA+AGG + chr5_1:40381313-40381332 Msa0730640:intron 50.0%
TGGACAAGGTTTCCGAGTGA+AGG + chr5_1:40381392-40381411 Msa0730640:CDS 50.0%
TTGATGAGGCGGGGTAATCT+TGG - chr5_1:40381420-40381439 None:intergenic 50.0%
ATCAAACCGCGGAGTTTCGA+TGG + chr5_1:40381435-40381454 Msa0730640:CDS 50.0%
AGTCAGGCACAGGGAAACAT+GGG - chr5_1:40382329-40382348 None:intergenic 50.0%
AAGTCAGGCACAGGGAAACA+TGG - chr5_1:40382330-40382349 None:intergenic 50.0%
! CAGATCAAGGTCTTTGAGGG+TGG - chr5_1:40382499-40382518 None:intergenic 50.0%
TGAGCGGGATTGTGAGTTCT+TGG + chr5_1:40382678-40382697 Msa0730640:CDS 50.0%
TGTAGGCCTGTAACACATGC+CGG + chr5_1:40383263-40383282 Msa0730640:intron 50.0%
TGTGGGACATATGCAAGCTG+TGG + chr5_1:40383410-40383429 Msa0730640:intron 50.0%
! TTTTCCGGCGAGATTCGTGC+CGG - chr5_1:40380136-40380155 None:intergenic 55.0%
CTTCTTCCAGCAATCACCGC+CGG - chr5_1:40380296-40380315 None:intergenic 55.0%
GCTGGAAGAAGCCGTTCACA+AGG + chr5_1:40380305-40380324 Msa0730640:CDS 55.0%
GGAAGAAGCCGTTCACAAGG+CGG + chr5_1:40380308-40380327 Msa0730640:CDS 55.0%
AGTGACACCGACGAGCTTCA+CGG + chr5_1:40380340-40380359 Msa0730640:CDS 55.0%
GAAACCACCGTGAAGCTCGT+CGG - chr5_1:40380350-40380369 None:intergenic 55.0%
AGCTTCACGGTGGTTTCCGA+TGG + chr5_1:40380353-40380372 Msa0730640:CDS 55.0%
TTCTCCGGCAACGTACCGAA+TGG + chr5_1:40380428-40380447 Msa0730640:CDS 55.0%
GGATCCATTCGGTACGTTGC+CGG - chr5_1:40380435-40380454 None:intergenic 55.0%
GGCAACGTACCGAATGGATC+CGG + chr5_1:40380434-40380453 Msa0730640:CDS 55.0%
GCAACGTACCGAATGGATCC+GGG + chr5_1:40380435-40380454 Msa0730640:CDS 55.0%
ACCGACGGTTGCATGTACGA+AGG + chr5_1:40380470-40380489 Msa0730640:CDS 55.0%
CCTTCAGGAGCGACTTACGA+GGG + chr5_1:40380539-40380558 Msa0730640:CDS 55.0%
CCCGCGATATGTATCACCGT+CGG - chr5_1:40380612-40380631 None:intergenic 55.0%
CCGACGGTGATACATATCGC+GGG + chr5_1:40380609-40380628 Msa0730640:CDS 55.0%
AACTCCGCGGTTTGATGAGG+CGG - chr5_1:40381431-40381450 None:intergenic 55.0%
CGAAACTCCGCGGTTTGATG+AGG - chr5_1:40381434-40381453 None:intergenic 55.0%
CTTTCCTCTCCCGGGAAAAG+CGG + chr5_1:40381743-40381762 Msa0730640:CDS 55.0%
CAAGAGCAGAACGGTTGGCA+AGG + chr5_1:40383769-40383788 Msa0730640:CDS 55.0%
GAATCCTTATAGCAGCGGGG+AGG + chr5_1:40383836-40383855 Msa0730640:CDS 55.0%
TAAGCCTCCCCGCTGCTATA+AGG - chr5_1:40383843-40383862 None:intergenic 55.0%
AGAAGCCGTTCACAAGGCGG+AGG + chr5_1:40380311-40380330 Msa0730640:CDS 60.0%
GCCTTCAGGAGCGACTTACG+AGG + chr5_1:40380538-40380557 Msa0730640:CDS 60.0%
CCCTCGTAAGTCGCTCCTGA+AGG - chr5_1:40380542-40380561 None:intergenic 60.0%
TACCCCGCCTCATCAAACCG+CGG + chr5_1:40381424-40381443 Msa0730640:CDS 60.0%
ACTCCGCGGTTTGATGAGGC+GGG - chr5_1:40381430-40381449 None:intergenic 60.0%
!! ACTTCCGCTTTTCCCGGGAG+AGG - chr5_1:40381750-40381769 None:intergenic 60.0%
GCCAGCAAGAGCAGAACGGT+TGG + chr5_1:40383764-40383783 Msa0730640:CDS 60.0%
GCCAACCGTTCTGCTCTTGC+TGG - chr5_1:40383768-40383787 None:intergenic 60.0%
GAGCAGAACGGTTGGCAAGG+AGG + chr5_1:40383772-40383791 Msa0730640:CDS 60.0%
GCAATCACCGCCGGTGGAGA+AGG - chr5_1:40380287-40380306 None:intergenic 65.0%
TCTCCACCGGCGGTGATTGC+TGG + chr5_1:40380287-40380306 Msa0730640:CDS 65.0%
CTTCCAGCAATCACCGCCGG+TGG - chr5_1:40380293-40380312 None:intergenic 65.0%
GACACCGACGAGCTTCACGG+TGG + chr5_1:40380343-40380362 Msa0730640:CDS 65.0%
CTCCGCGGTTTGATGAGGCG+GGG - chr5_1:40381429-40381448 None:intergenic 65.0%
TCCGGCGAGATTCGTGCCGG+CGG - chr5_1:40380133-40380152 None:intergenic 70.0%
! CGAGATTCGTGCCGGCGGCG+AGG - chr5_1:40380128-40380147 None:intergenic 75.0%
GCCGCCGGCACGAATCTCGC+CGG + chr5_1:40380129-40380148 Msa0730640:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 40380010 40384628 40380010 ID=Msa0730640;Name=Msa0730640
chr5_1 mRNA 40380010 40384628 40380010 ID=Msa0730640-mRNA-1;Parent=Msa0730640;Name=Msa0730640-mRNA-1;_AED=0.10;_eAED=0.10;_QI=187|1|1|1|1|1|8|585|733
chr5_1 exon 40380010 40381227 40380010 ID=Msa0730640-mRNA-1:exon:11761;Parent=Msa0730640-mRNA-1
chr5_1 exon 40381319 40381483 40381319 ID=Msa0730640-mRNA-1:exon:11762;Parent=Msa0730640-mRNA-1
chr5_1 exon 40381667 40381832 40381667 ID=Msa0730640-mRNA-1:exon:11763;Parent=Msa0730640-mRNA-1
chr5_1 exon 40382170 40382280 40382170 ID=Msa0730640-mRNA-1:exon:11764;Parent=Msa0730640-mRNA-1
chr5_1 exon 40382372 40382565 40382372 ID=Msa0730640-mRNA-1:exon:11765;Parent=Msa0730640-mRNA-1
chr5_1 exon 40382672 40382802 40382672 ID=Msa0730640-mRNA-1:exon:11766;Parent=Msa0730640-mRNA-1
chr5_1 exon 40382887 40382980 40382887 ID=Msa0730640-mRNA-1:exon:11767;Parent=Msa0730640-mRNA-1
chr5_1 exon 40383734 40384628 40383734 ID=Msa0730640-mRNA-1:exon:11768;Parent=Msa0730640-mRNA-1
chr5_1 five_prime_UTR 40380010 40380196 40380010 ID=Msa0730640-mRNA-1:five_prime_utr;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40380197 40381227 40380197 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40381319 40381483 40381319 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40381667 40381832 40381667 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40382170 40382280 40382170 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40382372 40382565 40382372 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40382672 40382802 40382672 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40382887 40382980 40382887 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 CDS 40383734 40384043 40383734 ID=Msa0730640-mRNA-1:cds;Parent=Msa0730640-mRNA-1
chr5_1 three_prime_UTR 40384044 40384628 40384044 ID=Msa0730640-mRNA-1:three_prime_utr;Parent=Msa0730640-mRNA-1
Gene Sequence

>Msa0730640

ATGAGTGATACAGTGGTGAACGATGAAGTTGTTGAGGTTGTTAGTTCAACGAAGAACAACATTCCTGAACCGGAGAAGGAAAACAAACCTTCTCCACCGGCGGTGATTGCTGGAAGAAGCCGTTCACAAGGCGGAGGTAGAAGAGTGACACCGACGAGCTTCACGGTGGTTTCCGATGGTAGATCCGTTGTTGAGAGAGTACTTCCGAACGGAGATTTCTATGCCGGAAGTTTCTCCGGCAACGTACCGAATGGATCCGGGAAGTATCTATGGACCGACGGTTGCATGTACGAAGGTGAATGGAAACGTGGAAAAGCTTCAGGGAAAGGGAAATTTTCATGGCCTTCAGGAGCGACTTACGAGGGAGAGTTCAAGTCGGGTCGAATGGAAGGATTCGGAACATTCGTTGGATCCGACGGTGATACATATCGCGGGTCATGGAGCTCCGATAGAAAACACGGGTTCGGTCAGAAACGTTACGCGAACGGTGATTTATACGAAGGGTGGTGGAAGCGTAACGTTCAAGATGGTCAAGGACGTTACGTTTGGAAGAATGGGAATGAGTATGTTGGTGAATGGCGTAACGGCGTTATATCTGGGAAGGGTTCGTTAGTTTGGGTTAACGGAAACCGTTTGGAGGGTTTGTGGGAGAATGGTGTTCCGAAAGGACAAGGTGTTATGAAGATTCAACATGGTTTTGGTGGGTTTGTTTGGAATGACAATTTTGCCCCTGTGTTGATGAGGAAACGTTCTTCTGTTGATACTACTGTTAGTGGTAGAGGGAGTTTGAATGAGAAGAATTTTCCTAGGATTTGTATTTGGGAATCTGAAGGTGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTCGAGGCTTCGATGTTTTATCGCGATGGAACGTGTTCTGATCCTGATGAGTTTCGAAAGCATCCTTGTTGTTTCTCTTCTGAGGTTAAGAGACCTGGTCAAACTATTTCTAAAGGGCATAAGAATTATGATTTGATGCTTAATTTGCAATTGGGGATTAGATACACGGTTGGGAAGGAAGCATCGAAGTTGCGAGAGCTTAAACCTAGTGATTTTGATCCTAAGGAGAAGTTCTGGACAAGGTTTCCGAGTGAAGGATCCAAGATTACCCCGCCTCATCAAACCGCGGAGTTTCGATGGAAAGATTACTGTCCGGTTGTTTTTAGACATTTGAGGAAGCTGTTTCAGGTTGATCCTGCTGATTATATGTTGGCTATATGTGGGGATGATGCTCTTAGAGAACTTTCCTCTCCCGGGAAAAGCGGAAGTGTTTTCTACTTGACCCAAGATGACAGATTCATGATTAAGACAGTGAAGAAATCTGAAGTCAAGGTGCTTCTTCGGATGCTTCGAAGCTATTACAAACACGTGTCCAAATATGAGAATTCACTGGTGACAAAATTCTTTGGGGTACATTGTGTGAAACCTATTGGAGGCCAAAAGATCCGGTTTATTGTGATGGGCAATCTTTTCTGCTCTGAATATCCAATTCATAGACGATTTGATTTGAAAGGATCTTCACATGGTCGTGCAACAGATAAACCTGAGGATGAGATTGATGAAACAACCACCCTCAAAGACCTTGATCTGAACTATGTGTTTCGTGTACAACGAAATTGGTACCAGGATCTTATTAAACAAATTGAGCGGGATTGTGAGTTCTTGGAAAACGAGAAAATTATGGACTACAGTCTTTTGGTTGGCCTTCATTTTCGTGATGACAACACTTATGACAAAATGGGGTTGTCACCTTTTCTTCTACGCACTGGCAATCAGGATTCTTATCATACTGAGAAGTTCATGCGTGGTTATCGCTTTCTCGAAGCAGAGTTGCAAGATAGGGATCGAGTTAAATCTGGAAGAAAATCATTAATCAGGCTAGGAGCCAATATGCCAGCAAGAGCAGAACGGTTGGCAAGGAGGAGTGATTTTGATCAATACACCAATGGTGGAATCAGCCATTTGAATCCTTATAGCAGCGGGGAGGCTTATGATTGCGTTCTATATTTTGGGGTTATCGATATTTTACAGGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAGTCTTTGCAAGTTGACTCTACTTCAATTTCTGCTGTTGATCCAAAGCTATACTCAAAAAGGTTTCGAGATTTTGTTGGAAGAATATTCATTGAAGATTGGTAA
Protein sequence

>Msa0730640

MSDTVVNDEVVEVVSSTKNNIPEPEKENKPSPPAVIAGRSRSQGGGRRVTPTSFTVVSDGRSVVERVLPNGDFYAGSFSGNVPNGSGKYLWTDGCMYEGEWKRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFVGSDGDTYRGSWSSDRKHGFGQKRYANGDLYEGWWKRNVQDGQGRYVWKNGNEYVGEWRNGVISGKGSLVWVNGNRLEGLWENGVPKGQGVMKIQHGFGGFVWNDNFAPVLMRKRSSVDTTVSGRGSLNEKNFPRICIWESEGEAGDITCDIVDNVEASMFYRDGTCSDPDEFRKHPCCFSSEVKRPGQTISKGHKNYDLMLNLQLGIRYTVGKEASKLRELKPSDFDPKEKFWTRFPSEGSKITPPHQTAEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSVFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYKHVSKYENSLVTKFFGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRATDKPEDEIDETTTLKDLDLNYVFRVQRNWYQDLIKQIERDCEFLENEKIMDYSLLVGLHFRDDNTYDKMGLSPFLLRTGNQDSYHTEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERLARRSDFDQYTNGGISHLNPYSSGEAYDCVLYFGVIDILQDYDISKKLEHAYKSLQVDSTSISAVDPKLYSKRFRDFVGRIFIEDW*