AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0849700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849700 MtrunA17_Chr5g0424301 99.318 733 5 0 1 733 1 733 0.0 1510
Msa0849700 MtrunA17_Chr3g0115111 75.310 725 143 8 32 732 19 731 0.0 1097
Msa0849700 MtrunA17_Chr3g0131001 66.913 677 194 7 64 732 50 704 0.0 884
Msa0849700 MtrunA17_Chr8g0385201 62.267 697 206 8 51 732 12 666 0.0 868
Msa0849700 MtrunA17_Chr8g0353121 50.667 750 303 12 37 732 14 750 0.0 678
Msa0849700 MtrunA17_Chr1g0171491 48.816 760 276 14 64 732 56 793 0.0 654
Msa0849700 MtrunA17_Chr1g0180261 42.481 798 307 15 60 729 42 815 0.0 587
Msa0849700 MtrunA17_Chr8g0380791 40.078 766 342 17 65 727 9 760 1.32e-180 534
Msa0849700 MtrunA17_Chr3g0082501 62.830 417 137 7 320 732 358 760 2.52e-167 500
Msa0849700 MtrunA17_Chr3g0082501 58.580 169 70 0 64 232 59 227 1.80e-63 226
Msa0849700 MtrunA17_Chr3g0082501 32.258 124 84 0 70 193 134 257 3.30e-15 79.7
Msa0849700 MtrunA17_Chr3g0082501 44.318 88 49 0 69 156 156 243 6.72e-14 75.5
Msa0849700 MtrunA17_Chr7g0256301 57.882 425 156 7 311 732 387 791 4.40e-162 488
Msa0849700 MtrunA17_Chr7g0256301 60.714 168 66 0 65 232 67 234 5.47e-66 233
Msa0849700 MtrunA17_Chr7g0256301 45.570 79 43 0 70 148 164 242 3.60e-12 70.1
Msa0849700 MtrunA17_Chr7g0256301 35.354 99 64 0 70 168 141 239 1.03e-11 68.6
Msa0849700 MtrunA17_Chr7g0256301 34.343 99 56 1 136 234 69 158 2.44e-11 67.4
Msa0849700 MtrunA17_Chr8g0377671 39.205 176 107 0 57 232 8 183 3.07e-34 132
Msa0849700 MtrunA17_Chr8g0377671 34.591 159 104 0 69 227 112 270 8.29e-24 102
Msa0849700 MtrunA17_Chr8g0377671 37.681 138 86 0 68 205 134 271 1.32e-21 95.9
Msa0849700 MtrunA17_Chr4g0059911 37.288 177 108 1 56 232 46 219 1.98e-31 126
Msa0849700 MtrunA17_Chr4g0059911 30.000 200 133 3 59 253 94 291 1.39e-19 91.7
Msa0849700 MtrunA17_Chr4g0059911 27.200 250 150 5 94 318 11 253 3.39e-18 87.4
Msa0849700 MtrunA17_Chr8g0377191 36.842 171 108 0 62 232 5 175 3.53e-31 121
Msa0849700 MtrunA17_Chr8g0377211 39.216 153 92 1 53 205 4 155 4.33e-30 117
Msa0849700 MtrunA17_Chr8g0382971 37.500 168 105 0 65 232 21 188 4.50e-30 122
Msa0849700 MtrunA17_Chr8g0382971 34.940 166 108 0 67 232 69 234 9.38e-25 106
Msa0849700 MtrunA17_Chr8g0382971 34.286 175 111 2 59 231 109 281 2.70e-22 99.4
Msa0849700 MtrunA17_Chr2g0316611 35.678 199 102 2 49 224 19 214 9.34e-27 112
Msa0849700 MtrunA17_Chr2g0316611 35.714 182 94 1 67 225 172 353 2.33e-24 105
Msa0849700 MtrunA17_Chr2g0316611 41.935 124 72 0 69 192 243 366 3.84e-22 99.0
Msa0849700 MtrunA17_Chr2g0316611 30.526 190 118 1 65 240 147 336 5.96e-19 89.7
Msa0849700 MtrunA17_Chr2g0316611 31.915 141 96 0 92 232 36 176 2.16e-16 81.6
Msa0849700 MtrunA17_Chr2g0316631 30.645 248 120 3 49 250 19 260 2.98e-26 109
Msa0849700 MtrunA17_Chr2g0316631 32.258 217 115 3 41 227 72 286 5.63e-25 106
Msa0849700 MtrunA17_Chr2g0316631 32.432 148 100 0 67 214 149 296 2.88e-18 86.3
Msa0849700 MtrunA17_Chr2g0316631 50.000 58 29 0 67 124 241 298 2.51e-11 65.5
Msa0849700 MtrunA17_Chr5g0424111 38.650 163 100 0 70 232 198 360 8.52e-26 111
Msa0849700 MtrunA17_Chr5g0424111 38.889 126 77 0 71 196 245 370 1.21e-18 89.4
Msa0849700 MtrunA17_Chr6g0467061 32.143 224 121 3 69 268 88 304 2.04e-25 108
Msa0849700 MtrunA17_Chr6g0467061 35.135 185 97 1 66 227 16 200 2.98e-25 107
Msa0849700 MtrunA17_Chr6g0467061 30.986 213 119 2 40 224 123 335 2.05e-20 93.2
Msa0849700 MtrunA17_Chr6g0467061 31.325 166 114 0 67 232 63 228 2.63e-17 84.0
Msa0849700 MtrunA17_Chr7g0233351 35.928 167 107 0 66 232 189 355 2.68e-25 109
Msa0849700 MtrunA17_Chr7g0233351 40.625 128 76 0 71 198 240 367 3.47e-22 100
Msa0849700 MtrunA17_Chr7g0233351 36.449 107 68 0 70 176 262 368 1.48e-14 76.6
Msa0849700 MtrunA17_Chr3g0114791 33.684 190 124 1 45 232 159 348 4.17e-25 108
Msa0849700 MtrunA17_Chr4g0055371 35.928 167 107 0 66 232 169 335 4.77e-24 105
Msa0849700 MtrunA17_Chr4g0055371 36.719 128 81 0 71 198 220 347 2.09e-18 88.6
Msa0849700 MtrunA17_Chr4g0055371 33.019 106 71 0 71 176 243 348 1.59e-11 67.0
Msa0849700 MtrunA17_Chr8g0336161 34.444 180 115 1 56 232 181 360 2.24e-23 103
Msa0849700 MtrunA17_Chr8g0336161 39.844 128 77 0 71 198 245 372 6.51e-21 96.7
Msa0849700 MtrunA17_Chr8g0336161 35.849 106 68 0 71 176 268 373 1.06e-14 77.4
Msa0849700 MtrunA17_Chr5g0398011 41.379 116 68 0 68 183 34 149 1.47e-21 91.7
Msa0849700 MtrunA17_Chr5g0398011 31.579 114 78 0 93 206 36 149 7.24e-14 69.7
Msa0849700 MtrunA17_Chr8g0385241 33.831 201 100 4 65 232 6 206 1.24e-20 95.5
Msa0849700 MtrunA17_Chr8g0385241 30.500 200 105 2 67 232 54 253 4.41e-18 87.4
Msa0849700 MtrunA17_Chr8g0385241 29.545 176 113 2 68 232 124 299 1.21e-16 83.2
Msa0849700 MtrunA17_Chr8g0385241 36.301 146 92 1 90 234 8 153 5.62e-16 80.9
Msa0849700 MtrunA17_Chr8g0385241 31.293 147 100 1 71 216 183 329 9.45e-14 73.9
Msa0849700 MtrunA17_Chr8g0385241 30.137 146 100 1 38 183 199 342 2.69e-11 66.2
Msa0849700 MtrunA17_Chr5g0398021 40.000 100 60 0 69 168 13 112 4.57e-19 84.7
Msa0849700 MtrunA17_Chr5g0398021 32.673 101 68 0 92 192 13 113 3.86e-11 62.0
Msa0849700 MtrunA17_Chr5g0398021 33.673 98 65 0 117 214 15 112 5.73e-11 61.6
Msa0849700 MtrunA17_Chr8g0383331 31.973 147 100 0 69 215 4 150 1.21e-18 84.0
Msa0849700 MtrunA17_Chr8g0383331 36.667 120 76 0 91 210 3 122 3.15e-17 79.7
Msa0849700 MtrunA17_Chr8g0383331 32.231 121 82 0 112 232 1 121 1.85e-16 77.4
Msa0849700 MtrunA17_Chr8g0377221 35.616 146 79 2 66 196 71 216 3.21e-17 82.8
Msa0849700 MtrunA17_Chr8g0377221 29.744 195 99 2 67 223 3 197 8.76e-17 81.3
Msa0849700 MtrunA17_Chr8g0383551 27.706 231 115 7 53 232 10 239 1.71e-16 82.0
Msa0849700 MtrunA17_Chr8g0383551 26.415 159 82 3 91 214 109 267 4.74e-11 65.1
Msa0849700 MtrunA17_Chr1g0210831 29.381 194 105 4 28 220 579 741 1.65e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0849700 AT1G21980.1 74.861 720 147 8 31 732 48 751 0.0 1082
Msa0849700 AT1G77740.2 75.035 713 147 7 39 732 53 753 0.0 1075
Msa0849700 AT1G77740.1 75.035 713 147 7 39 732 53 753 0.0 1075
Msa0849700 AT2G26420.2 60.140 715 232 12 47 732 28 718 0.0 838
Msa0849700 AT2G26420.3 60.140 715 232 12 47 732 28 718 0.0 838
Msa0849700 AT2G26420.1 59.664 714 223 11 47 732 28 704 0.0 832
Msa0849700 AT3G07960.1 54.144 724 246 15 64 732 22 714 0.0 739
Msa0849700 AT2G41210.1 52.210 724 274 13 64 732 65 771 0.0 727
Msa0849700 AT3G56960.2 52.407 727 273 14 64 732 67 778 0.0 725
Msa0849700 AT3G56960.1 52.407 727 273 14 64 732 67 778 0.0 725
Msa0849700 AT3G07960.3 55.226 574 190 10 64 583 22 582 0.0 619
Msa0849700 AT3G07960.2 55.226 574 190 10 64 583 22 582 0.0 619
Msa0849700 AT3G07960.2 32.432 148 95 1 39 181 61 208 1.67e-16 84.0
Msa0849700 AT3G07960.4 55.226 574 190 10 64 583 22 582 0.0 619
Msa0849700 AT3G07960.4 32.432 148 95 1 39 181 61 208 1.67e-16 84.0
Msa0849700 AT3G09920.3 41.432 782 330 15 63 732 47 812 0.0 576
Msa0849700 AT3G09920.4 41.432 782 330 15 63 732 47 812 0.0 576
Msa0849700 AT3G09920.2 41.432 782 330 15 63 732 47 812 0.0 576
Msa0849700 AT3G09920.1 41.432 782 330 15 63 732 47 812 0.0 576
Msa0849700 AT1G10900.2 41.821 758 340 16 65 732 7 753 0.0 543
Msa0849700 AT1G10900.1 41.821 758 340 16 65 732 7 753 0.0 543
Msa0849700 AT1G10900.3 41.821 758 340 16 65 732 7 753 0.0 543
Msa0849700 AT1G60890.1 40.722 776 338 18 64 731 6 767 8.95e-180 533
Msa0849700 AT1G60890.2 40.722 776 338 18 64 731 18 779 9.35e-180 533
Msa0849700 AT1G01460.1 37.825 423 214 8 355 732 4 422 7.05e-81 265
Msa0849700 AT4G01190.1 38.095 399 189 6 371 730 12 391 3.25e-78 256
Msa0849700 AT4G01190.3 38.095 399 189 6 371 730 22 401 3.52e-78 257
Msa0849700 AT4G01190.2 38.095 399 189 6 371 730 22 401 3.52e-78 257
Msa0849700 AT1G77660.1 37.126 167 105 0 66 232 175 341 8.77e-27 114
Msa0849700 AT1G77660.1 36.508 126 80 0 71 196 226 351 1.13e-16 83.6
Msa0849700 AT1G21920.2 37.423 163 102 0 70 232 175 337 5.12e-25 108
Msa0849700 AT1G21920.2 38.281 128 79 0 71 198 222 349 4.16e-18 87.4
Msa0849700 AT1G21920.1 37.423 163 102 0 70 232 175 337 7.45e-25 108
Msa0849700 AT1G21920.1 38.281 128 79 0 71 198 222 349 5.52e-18 87.4
Msa0849700 AT2G35170.1 35.404 161 104 0 72 232 229 389 4.19e-23 103
Msa0849700 AT2G35170.1 37.984 129 80 0 71 199 274 402 1.08e-21 99.8
Msa0849700 AT4G17080.1 34.969 163 106 0 70 232 258 420 1.63e-22 102
Msa0849700 AT4G17080.1 37.209 129 81 0 71 199 305 433 4.67e-21 97.8
Msa0849700 AT4G17080.1 32.867 143 94 1 90 232 234 374 6.18e-13 72.4
Msa0849700 AT1G34260.2 34.158 202 103 10 398 579 1192 1383 1.83e-14 78.2
Msa0849700 AT1G34260.1 34.158 202 103 10 398 579 1192 1383 1.83e-14 78.2
Msa0849700 AT1G34260.3 34.158 202 103 10 398 579 1192 1383 1.83e-14 78.2
Msa0849700 AT1G34260.4 34.158 202 103 10 398 579 952 1143 1.90e-14 78.2
Msa0849700 AT1G75010.1 30.469 128 87 2 94 220 604 730 1.49e-12 71.6

Find 232 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGCGTTCTATATTT+TGG 0.084583 5_4:+37338211 Msa0849700:CDS
CACCAGTGAATTCTCATATT+TGG 0.134783 5_4:-37336561 None:intergenic
TGGCGTAACGGCGTTATATC+TGG 0.180746 5_4:+37335116 Msa0849700:CDS
TGACAACACTTATGACAAAA+TGG 0.237609 5_4:+37337104 Msa0849700:CDS
ACATTTGAGGAAGCTGTTTC+AGG 0.245765 5_4:+37336015 Msa0849700:CDS
CTGGGAAGGGTTCGTTAGTT+TGG 0.245826 5_4:+37335135 Msa0849700:CDS
CACTGGTGACAAAATTCTTT+GGG 0.252892 5_4:+37336576 Msa0849700:CDS
TTAATTTGCAATTGGGGATT+AGG 0.273921 5_4:+37335549 Msa0849700:CDS
GCCAACCGTTCTGCTCTTGC+TGG 0.278983 5_4:-37338115 None:intergenic
ATCCAAAGCTATACTCAAAA+AGG 0.280883 5_4:+37338329 Msa0849700:CDS
TCTCCACCGGCGGTGATTGC+TGG 0.283531 5_4:+37334630 Msa0849700:CDS
CTTGGAAAACGAGAAAATTA+TGG 0.284377 5_4:+37337047 Msa0849700:CDS
TGTTTCGTGTACAACGAAAT+TGG 0.287459 5_4:+37336877 Msa0849700:CDS
TGAGCGGGATTGTGAGTTCT+TGG 0.304803 5_4:+37337029 Msa0849700:CDS
AAATCAAATCGTCTATGAAT+TGG 0.308050 5_4:-37336765 None:intergenic
TCACTGGTGACAAAATTCTT+TGG 0.313285 5_4:+37336575 Msa0849700:CDS
TTTGTGATCATCATGATTCA+TGG 0.316766 5_4:-37338452 None:intergenic
CCATCATATTCATATCCTAT+TGG 0.327679 5_4:-37338744 None:intergenic
TCTTCAGAAAATCATTAATC+AGG 0.329444 5_4:+37338077 Msa0849700:intron
TTCATAACACCTTGTCCTTT+CGG 0.334631 5_4:-37335200 None:intergenic
AATTATGGACTACAGTCTTT+TGG 0.340214 5_4:+37337062 Msa0849700:CDS
TTCTGCTCTTGCTGGCATAT+TGG 0.341644 5_4:-37338107 None:intergenic
TAAGCCTCCCCGCTGCTATA+AGG 0.344398 5_4:-37338190 None:intergenic
ATGAAGATTCAACATGGTTT+TGG 0.351168 5_4:+37335218 Msa0849700:CDS
TCGAAGCAGAGTTGCAAGAT+AGG 0.359055 5_4:+37337289 Msa0849700:CDS
TGGGAAGGGTTCGTTAGTTT+GGG 0.361513 5_4:+37335136 Msa0849700:CDS
TGGAAACGTGGAAAAGCTTC+GGG 0.366287 5_4:+37334840 Msa0849700:CDS
TTGATCCTAAGGAGAAGTTC+TGG 0.368369 5_4:+37335720 Msa0849700:CDS
ATGATTTGCTTTGCTGGATC+AGG 0.368847 5_4:+37338628 Msa0849700:three_prime_UTR
GGTTCGTTAGTTTGGGTTAA+CGG 0.369043 5_4:+37335143 Msa0849700:CDS
AATTTATTGTGGTTACCAAT+AGG 0.369864 5_4:+37338729 Msa0849700:three_prime_UTR
ATGATGATGATTTGCTTTGC+TGG 0.371043 5_4:+37338622 Msa0849700:three_prime_UTR
ATGGATCCGGGAAGTATCTA+TGG 0.372629 5_4:+37334790 Msa0849700:CDS
TTGAAACCCACTTGCAAAAG+AGG 0.384867 5_4:+37338499 Msa0849700:three_prime_UTR
GGACGTTACGTTTGGAAGAA+TGG 0.386687 5_4:+37335074 Msa0849700:CDS
GACAACACTTATGACAAAAT+GGG 0.387432 5_4:+37337105 Msa0849700:CDS
GAAGAATATTCATTGAAGAT+TGG 0.390671 5_4:+37338368 Msa0849700:CDS
TTTGATGCTTAATTTGCAAT+TGG 0.398155 5_4:+37335541 Msa0849700:CDS
TTCTACGCCGGAAGTTTCTC+CGG 0.400570 5_4:+37334756 Msa0849700:CDS
TAATCATGAATCTGTCATCT+TGG 0.402081 5_4:-37336132 None:intergenic
TCTGTTGATACTACTGTTAG+TGG 0.407554 5_4:+37335293 Msa0849700:CDS
CTGATGAACAGTAAACTCTA+AGG 0.407609 5_4:-37338524 None:intergenic
ATGGTCAAGGACGTTACGTT+TGG 0.409474 5_4:+37335066 Msa0849700:CDS
GTTTCATCAATCTCATCCTC+AGG 0.418360 5_4:-37336822 None:intergenic
GGATCCATTCGGTACGTTGC+CGG 0.418393 5_4:-37334775 None:intergenic
TTGATGAGGCGGGGTAATCT+TGG 0.419366 5_4:-37335765 None:intergenic
TTGGGTTAACGGAAACCGTT+TGG 0.419511 5_4:+37335154 Msa0849700:CDS
GATAGGGATCGAGTTAAATC+TGG 0.420387 5_4:+37337306 Msa0849700:CDS
GTCGGTCCATAGATACTTCC+CGG 0.423054 5_4:-37334796 None:intergenic
TTGATGCTTAATTTGCAATT+GGG 0.424572 5_4:+37335542 Msa0849700:CDS
GGCAACGTACCGAATGGATC+CGG 0.425374 5_4:+37334777 Msa0849700:CDS
TTTGATTCTTCAGACATTTG+AGG 0.429922 5_4:+37336002 Msa0849700:intron
TTGGAGGGTTTGTGGGAGAA+TGG 0.430235 5_4:+37335173 Msa0849700:CDS
TACGTTGCCGGAGAAACTTC+CGG 0.431856 5_4:-37334763 None:intergenic
CTTGTCCAGAACTTCTCCTT+AGG 0.442703 5_4:-37335725 None:intergenic
AACTCAAGTGAGATTCTTTG+AGG 0.444966 5_4:-37338563 None:intergenic
GACGTTACGTTTGGAAGAAT+GGG 0.445546 5_4:+37335075 Msa0849700:CDS
ATGGAAACGTGGAAAAGCTT+CGG 0.449727 5_4:+37334839 Msa0849700:CDS
CTGGTCAAACTATTTCTAAA+GGG 0.449919 5_4:+37335504 Msa0849700:CDS
CTTAGAGAACTTTCCTCTCC+CGG 0.455504 5_4:+37336082 Msa0849700:CDS
CATAGACGATTTGATTTGAA+AGG 0.457560 5_4:+37336771 Msa0849700:CDS
GGGACTTATTTAATTTATTG+TGG 0.462660 5_4:+37338718 Msa0849700:three_prime_UTR
GTTCAGATCAAGGTCTTTGA+GGG 0.462840 5_4:-37336850 None:intergenic
TCCTTGTTGTTTCTCTTCTG+AGG 0.466238 5_4:+37335472 Msa0849700:CDS
ATCAAACCGCGGAGTTTCGA+TGG 0.467094 5_4:+37335783 Msa0849700:CDS
CAAATGGCTGATTCCACCAT+TGG 0.468458 5_4:-37338164 None:intergenic
TCCGATAGAAAACACGGGTT+CGG 0.471872 5_4:+37334984 Msa0849700:CDS
AATCATGAATCTGTCATCTT+GGG 0.472481 5_4:-37336131 None:intergenic
GTACATTGTGTGAAACCTAT+TGG 0.473664 5_4:+37336599 Msa0849700:CDS
CCTGGTCAAACTATTTCTAA+AGG 0.477641 5_4:+37335503 Msa0849700:CDS
TCAGATCCGGTTTATTGTGA+TGG 0.478024 5_4:+37336719 Msa0849700:intron
GAAACCGTTTGGAGGGTTTG+TGG 0.478922 5_4:+37335165 Msa0849700:CDS
CCAATAGGATATGAATATGA+TGG 0.479090 5_4:+37338744 Msa0849700:three_prime_UTR
GAAGAGCAACATTCCTGAAC+CGG 0.481606 5_4:+37334590 Msa0849700:CDS
CCCTCGTAAGTCGCGCCTGA+AGG 0.482364 5_4:-37334882 None:intergenic
GGCGTAACGGCGTTATATCT+GGG 0.483135 5_4:+37335117 Msa0849700:CDS
GATTGCCCATCACAATAAAC+CGG 0.485074 5_4:-37336725 None:intergenic
AAACCGTTTGGAGGGTTTGT+GGG 0.486108 5_4:+37335166 Msa0849700:CDS
ATTTGAATCCTTATAGCAGC+GGG 0.489048 5_4:+37338182 Msa0849700:CDS
GTGGAAAAGCTTCGGGGAAA+GGG 0.490458 5_4:+37334847 Msa0849700:CDS
ATACCAGTGCGTAGAAGAAA+AGG 0.493562 5_4:-37337135 None:intergenic
TCGGGTCGAATGGAAGGATT+CGG 0.497771 5_4:+37334915 Msa0849700:CDS
GATACTACTGTTAGTGGTAG+AGG 0.499269 5_4:+37335299 Msa0849700:CDS
GATTATATGTTGGCTATATG+TGG 0.502251 5_4:+37336049 Msa0849700:CDS
AACTCCGCGGTTTGATGAGG+CGG 0.504312 5_4:-37335776 None:intergenic
AAATATAGGAAGAGGGGTGA+AGG 0.508339 5_4:+37338773 Msa0849700:three_prime_UTR
AGTTCAGATCAAGGTCTTTG+AGG 0.508946 5_4:-37336851 None:intergenic
GATTCCCAAATACAAATCCT+AGG 0.509645 5_4:-37335344 None:intergenic
CAGATCCGGTTTATTGTGAT+GGG 0.510029 5_4:+37336720 Msa0849700:intron
GTTGCATGTACGAAGGTGAA+TGG 0.510431 5_4:+37334820 Msa0849700:CDS
GTGATACATATCGCGGGTCG+TGG 0.513239 5_4:+37334958 Msa0849700:CDS
CGTGGAAAAGCTTCGGGGAA+AGG 0.513650 5_4:+37334846 Msa0849700:CDS
ACTCCGCGGTTTGATGAGGC+GGG 0.514713 5_4:-37335775 None:intergenic
CGCTGCTATAAGGATTCAAA+TGG 0.515820 5_4:-37338180 None:intergenic
TAATTATTATATTATTCTTG+AGG 0.517028 5_4:+37338903 Msa0849700:three_prime_UTR
GAAACCTATTGGAGGCCAAA+AGG 0.519281 5_4:+37336610 Msa0849700:CDS
GAAGGATTCGGAACATTCGT+TGG 0.521458 5_4:+37334927 Msa0849700:CDS
TCTTCTGAGGTTAAGAGACC+TGG 0.521675 5_4:+37335485 Msa0849700:CDS
GCAATCACCGCCGGTGGAGA+AGG 0.522071 5_4:-37334627 None:intergenic
AAACTTACTTAATAAGATCC+TGG 0.522332 5_4:-37336902 None:intergenic
AGATACTTCCCGGATCCATT+CGG 0.526389 5_4:-37334786 None:intergenic
TTAGAGAACTTTCCTCTCCC+GGG 0.528049 5_4:+37336083 Msa0849700:CDS
CGAAGCAGAGTTGCAAGATA+GGG 0.528077 5_4:+37337290 Msa0849700:CDS
GTGATTTATACGAAGGGTGG+TGG 0.528555 5_4:+37335027 Msa0849700:CDS
CAACATTCCTGAACCGGAGA+AGG 0.528680 5_4:+37334596 Msa0849700:CDS
AGAGTTCAAGTCGGGTCGAA+TGG 0.530606 5_4:+37334905 Msa0849700:CDS
CCTTTAGAAATAGTTTGACC+AGG 0.531392 5_4:-37335503 None:intergenic
CAAGAGCAGAACGGTTGGCA+AGG 0.532403 5_4:+37338119 Msa0849700:CDS
ATGTACAGTTGTTATACAAA+GGG 0.533655 5_4:+37338856 Msa0849700:three_prime_UTR
TACGAGGGAGAGTTCAAGTC+GGG 0.538370 5_4:+37334897 Msa0849700:CDS
TGATGCTTAATTTGCAATTG+GGG 0.539251 5_4:+37335543 Msa0849700:CDS
TTCAAGTCGGGTCGAATGGA+AGG 0.541704 5_4:+37334909 Msa0849700:CDS
GGAACATTCGTTGGATCCGA+CGG 0.543679 5_4:+37334936 Msa0849700:CDS
TCAAAGAATCTCACTTGAGT+TGG 0.544059 5_4:+37338565 Msa0849700:three_prime_UTR
TGGACAAGGTTTCCGAGTGA+AGG 0.546695 5_4:+37335740 Msa0849700:CDS
CAGATCAAGGTCTTTGAGGG+TGG 0.547100 5_4:-37336847 None:intergenic
CTTTCCTCTCCCGGGAAAAG+CGG 0.547869 5_4:+37336091 Msa0849700:CDS
AATATAGGAAGAGGGGTGAA+GGG 0.550375 5_4:+37338774 Msa0849700:three_prime_UTR
AGCTTCACGGTGGTTTCCGA+TGG 0.550449 5_4:+37334696 Msa0849700:CDS
ATTATATGTTGGCTATATGT+GGG 0.552492 5_4:+37336050 Msa0849700:CDS
GCAACGTACCGAATGGATCC+GGG 0.560372 5_4:+37334778 Msa0849700:CDS
TCTCCCACAAACCCTCCAAA+CGG 0.561965 5_4:-37335169 None:intergenic
GTTGTTATACAAAGGGTGGA+TGG 0.563033 5_4:+37338863 Msa0849700:three_prime_UTR
TTCATCAGATCACTGTAAGT+GGG 0.563085 5_4:+37338539 Msa0849700:three_prime_UTR
AGCAAAGCAAATCATCATCA+TGG 0.563695 5_4:-37338620 None:intergenic
AATGTACAGTTGTTATACAA+AGG 0.563738 5_4:+37338855 Msa0849700:three_prime_UTR
ATTTGTATTTGGGAATCTGA+AGG 0.563741 5_4:+37335350 Msa0849700:CDS
GTCTACCACCTCCTTGTGAA+CGG 0.563775 5_4:-37334659 None:intergenic
TGTTGTCATCACGAAAATGA+AGG 0.564482 5_4:-37337089 None:intergenic
TTATGTGTAGATACACGGTT+GGG 0.565022 5_4:+37335657 Msa0849700:intron
TTTGATCAATACACCAATGG+TGG 0.566117 5_4:+37338151 Msa0849700:CDS
TGGGAATCTGAAGGTGAAGC+TGG 0.566561 5_4:+37335359 Msa0849700:CDS
AGAAAGCAAATAAAGAGAAG+AGG 0.567172 5_4:-37334374 None:intergenic
ATAGCCAACATATAATCAGC+AGG 0.569375 5_4:-37336043 None:intergenic
GAAACACATAGTTCAGATCA+AGG 0.569553 5_4:-37336860 None:intergenic
CTAAGGAGAAGTTCTGGACA+AGG 0.572481 5_4:+37335726 Msa0849700:CDS
TCCTTAGGATCAAAATCACT+AGG 0.573231 5_4:-37335710 None:intergenic
TGAAACCCACTTGCAAAAGA+GGG 0.573637 5_4:+37338500 Msa0849700:three_prime_UTR
GTTCATCAGATCACTGTAAG+TGG 0.573715 5_4:+37338538 Msa0849700:three_prime_UTR
GATAAAATATCTTCTCCTGA+AGG 0.573939 5_4:+37338420 Msa0849700:three_prime_UTR
GCCGCCGGCACGAATCTCGC+CGG 0.575511 5_4:+37334470 Msa0849700:five_prime_UTR
GCCAGCAAGAGCAGAACGGT+TGG 0.576008 5_4:+37338114 Msa0849700:CDS
AGTGAAGAAATCTGAAGTCA+AGG 0.576419 5_4:+37336159 Msa0849700:CDS
TTCTCCGGCAACGTACCGAA+TGG 0.579587 5_4:+37334771 Msa0849700:CDS
CGAGATTCGTGCCGGCGGCG+AGG 0.581051 5_4:-37334466 None:intergenic
CGAAACTCCGCGGTTTGATG+AGG 0.581720 5_4:-37335779 None:intergenic
TCGATGGAAAGATTACTGTC+CGG 0.582178 5_4:+37335799 Msa0849700:CDS
CCGGCGTAGAAATCTCCGTT+CGG 0.582234 5_4:-37334744 None:intergenic
TACAGTTGTTATACAAAGGG+TGG 0.584198 5_4:+37338859 Msa0849700:three_prime_UTR
TGATTTGCTTTGCTGGATCA+GGG 0.585509 5_4:+37338629 Msa0849700:three_prime_UTR
GCCTTCAGGCGCGACTTACG+AGG 0.585744 5_4:+37334881 Msa0849700:CDS
TGGGAGAATGGTGTTCCGAA+AGG 0.586485 5_4:+37335185 Msa0849700:CDS
GGTTAACGGAAACCGTTTGG+AGG 0.586593 5_4:+37335157 Msa0849700:CDS
AGTGACACCGACGAGCTTCA+CGG 0.588056 5_4:+37334683 Msa0849700:CDS
GTGTTCCAGACAAATTGAGC+GGG 0.588866 5_4:+37337014 Msa0849700:intron
AGAAAATCATTAATCAGGCT+AGG 0.589168 5_4:+37338082 Msa0849700:intron
TAACGGCGTTATATCTGGGA+AGG 0.589873 5_4:+37335121 Msa0849700:CDS
GTTATGTGTAGATACACGGT+TGG 0.590677 5_4:+37335656 Msa0849700:intron
GTCCAAATATGAGAATTCAC+TGG 0.592833 5_4:+37336559 Msa0849700:CDS
TCCGGCGAGATTCGTGCCGG+CGG 0.593401 5_4:-37334471 None:intergenic
CTCAACAACGGATCTACCAT+CGG 0.594963 5_4:-37334712 None:intergenic
TGACCAGTTAGTACAAAATG+AGG 0.601177 5_4:+37338398 Msa0849700:three_prime_UTR
TGATCCTGCTGATTATATGT+TGG 0.603422 5_4:+37336039 Msa0849700:CDS
GGAAAACAAACCTTCTCCAC+CGG 0.604991 5_4:+37334617 Msa0849700:CDS
AATGGTGTTCCGAAAGGACA+AGG 0.606673 5_4:+37335191 Msa0849700:CDS
GTTAACGGAAACCGTTTGGA+GGG 0.607741 5_4:+37335158 Msa0849700:CDS
GGAATGAGTATGTTGGTGAA+TGG 0.608130 5_4:+37335096 Msa0849700:CDS
AGAAGCCGTTCACAAGGAGG+TGG 0.608692 5_4:+37334654 Msa0849700:CDS
GTGTAGATACACGGTTGGGA+AGG 0.610224 5_4:+37335661 Msa0849700:intron
TATGTTGGTGAATGGCGTAA+CGG 0.613312 5_4:+37335104 Msa0849700:CDS
AAGAATGGGAATGAGTATGT+TGG 0.613469 5_4:+37335089 Msa0849700:CDS
ATACTACTGTTAGTGGTAGA+GGG 0.613626 5_4:+37335300 Msa0849700:CDS
GAGCAGAACGGTTGGCAAGG+AGG 0.613970 5_4:+37338122 Msa0849700:CDS
GGTCAGAAACGTTACGCGAA+CGG 0.615476 5_4:+37335005 Msa0849700:CDS
ACTGGTGACAAAATTCTTTG+GGG 0.617270 5_4:+37336577 Msa0849700:CDS
ACTGAGCATTGATTTCTCGC+CGG 0.619661 5_4:+37334500 Msa0849700:five_prime_UTR
TCATGTTATGTGTAGATACA+CGG 0.622165 5_4:+37335652 Msa0849700:intron
CTTCCAGCAATCACCGCCGG+TGG 0.622524 5_4:-37334633 None:intergenic
GTAATCTTGGATCCTTCACT+CGG 0.623506 5_4:-37335752 None:intergenic
CTTCTTCCAGCAATCACCGC+CGG 0.623571 5_4:-37334636 None:intergenic
CCGAACGGAGATTTCTACGC+CGG 0.624286 5_4:+37334744 Msa0849700:CDS
CTCCGCGGTTTGATGAGGCG+GGG 0.626199 5_4:-37335774 None:intergenic
ACAACACTTATGACAAAATG+GGG 0.628764 5_4:+37337106 Msa0849700:CDS
TGATATTGTTGATAATGTCG+AGG 0.629658 5_4:+37335394 Msa0849700:CDS
GCTGGAAGAAGCCGTTCACA+AGG 0.630714 5_4:+37334648 Msa0849700:CDS
TGGAAGCGTAACGTTCAAGA+TGG 0.631023 5_4:+37335047 Msa0849700:CDS
GAACGTTTCCTCATCAACAC+AGG 0.631655 5_4:-37335269 None:intergenic
GCGAACGGTGATTTATACGA+AGG 0.632599 5_4:+37335020 Msa0849700:CDS
GGGATCGAGTTAAATCTGGA+AGG 0.635478 5_4:+37337310 Msa0849700:CDS
GATTTGAAAGGATCTTCACA+TGG 0.636840 5_4:+37336783 Msa0849700:CDS
CCTTCAGGCGCGACTTACGA+GGG 0.638477 5_4:+37334882 Msa0849700:CDS
CATTTGAATCCTTATAGCAG+CGG 0.641163 5_4:+37338181 Msa0849700:CDS
CATTGTGTGAAACCTATTGG+AGG 0.647839 5_4:+37336602 Msa0849700:CDS
AACGGCGTTATATCTGGGAA+GGG 0.647935 5_4:+37335122 Msa0849700:CDS
AACGTTTCCTCATCAACACA+GGG 0.651828 5_4:-37335268 None:intergenic
TGGAGCTCCGATAGAAAACA+CGG 0.652318 5_4:+37334978 Msa0849700:CDS
TCATCAGATCACTGTAAGTG+GGG 0.653684 5_4:+37338540 Msa0849700:three_prime_UTR
GGTGAACGATGAAGTTGTTG+AGG 0.655019 5_4:+37334554 Msa0849700:CDS
GAAACCACCGTGAAGCTCGT+CGG 0.655705 5_4:-37334690 None:intergenic
CGTAACGTTCAAGATGGTCA+AGG 0.657499 5_4:+37335053 Msa0849700:CDS
ACGGTGATTTATACGAAGGG+TGG 0.664730 5_4:+37335024 Msa0849700:CDS
GTTGAGAGAGTACTTCCGAA+CGG 0.664758 5_4:+37334729 Msa0849700:CDS
AAGGGAAAATTGTTTCCCTG+AGG 0.665913 5_4:+37338792 Msa0849700:three_prime_UTR
TGTACAACGAAATTGGTACC+AGG 0.667243 5_4:+37336884 Msa0849700:CDS
CCGACGGTGATACATATCGC+GGG 0.668037 5_4:+37334952 Msa0849700:CDS
AAACAAACCTTCTCCACCGG+CGG 0.669189 5_4:+37334620 Msa0849700:CDS
GGGAAGTATCTATGGACCGA+CGG 0.669212 5_4:+37334798 Msa0849700:CDS
TTCGAAAATGAGTGATACAG+TGG 0.669503 5_4:+37334533 Msa0849700:exon
CGAACGGTGATTTATACGAA+GGG 0.671404 5_4:+37335021 Msa0849700:CDS
TGTGTTCCAGACAAATTGAG+CGG 0.672020 5_4:+37337013 Msa0849700:intron
GGAAGAAGCCGTTCACAAGG+AGG 0.676227 5_4:+37334651 Msa0849700:CDS
CATACTGAGAAGTTCATGCG+TGG 0.677957 5_4:+37337255 Msa0849700:CDS
GAATCCTTATAGCAGCGGGG+AGG 0.683149 5_4:+37338186 Msa0849700:CDS
TCCGACGGTGATACATATCG+CGG 0.684537 5_4:+37334951 Msa0849700:CDS
TTATATGTTGGCTATATGTG+GGG 0.684561 5_4:+37336051 Msa0849700:CDS
CCCGCGATATGTATCACCGT+CGG 0.686357 5_4:-37334952 None:intergenic
ACCTCAGAAGAGAAACAACA+AGG 0.687681 5_4:-37335473 None:intergenic
ATCTTTCCATCGAAACTCCG+CGG 0.690643 5_4:-37335789 None:intergenic
ACCTTCGTACATGCAACCGT+CGG 0.692042 5_4:-37334814 None:intergenic
ATATGCCAGCAAGAGCAGAA+CGG 0.698498 5_4:+37338110 Msa0849700:CDS
GGTGTTATGAAGATTCAACA+TGG 0.703414 5_4:+37335212 Msa0849700:CDS
CGGAAGTACTCTCTCAACAA+CGG 0.711881 5_4:-37334724 None:intergenic
TTACGAGGGAGAGTTCAAGT+CGG 0.724697 5_4:+37334896 Msa0849700:CDS
GGAAACGTGGAAAAGCTTCG+GGG 0.726865 5_4:+37334841 Msa0849700:CDS
TACGAAGGTGAATGGAAACG+TGG 0.729766 5_4:+37334828 Msa0849700:CDS
GGAGCTCCGATAGAAAACAC+GGG 0.730458 5_4:+37334979 Msa0849700:CDS
ACCGACGGTTGCATGTACGA+AGG 0.732846 5_4:+37334813 Msa0849700:CDS
TTTGAATCCTTATAGCAGCG+GGG 0.739961 5_4:+37338183 Msa0849700:CDS
TACCCCGCCTCATCAAACCG+CGG 0.741865 5_4:+37335772 Msa0849700:CDS
TCGTGCAACAGATAAACCTG+AGG 0.756825 5_4:+37336806 Msa0849700:CDS
GACACCGACGAGCTTCACGG+TGG 0.776234 5_4:+37334686 Msa0849700:CDS
ACGTTTCCTCATCAACACAG+GGG 0.812629 5_4:-37335267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGATTTAATTTATCAAA+TGG + chr5_4:37337378-37337397 Msa0849700:intron 10.0%
!!! TTTGATTTCTAATATATTTT+TGG + chr5_4:37337803-37337822 Msa0849700:intron 10.0%
!!! TTTTGTATTTTTTTTTGAAA+TGG + chr5_4:37338692-37338711 Msa0849700:three_prime_UTR 10.0%
!!! TTTGTATTTTTTTTTGAAAT+GGG + chr5_4:37338693-37338712 Msa0849700:three_prime_UTR 10.0%
!! TAATTATTATATTATTCTTG+AGG + chr5_4:37338903-37338922 Msa0849700:three_prime_UTR 10.0%
!!! ATTTTCGAATATATTTTTTC+CGG - chr5_4:37334522-37334541 None:intergenic 15.0%
!!! TATTTTTTTTCTTTCTTTCT+AGG + chr5_4:37336937-37336956 Msa0849700:intron 15.0%
!! CTTAAATTCAAATTCTTTAT+TGG + chr5_4:37337636-37337655 Msa0849700:intron 15.0%
!! AAACATGTATATGAAAAAAA+TGG + chr5_4:37338653-37338672 Msa0849700:three_prime_UTR 15.0%
!! AACATGTATATGAAAAAAAT+GGG + chr5_4:37338654-37338673 Msa0849700:three_prime_UTR 15.0%
!!! TTGTATTTTTTTTTGAAATG+GGG + chr5_4:37338694-37338713 Msa0849700:three_prime_UTR 15.0%
!!! TATGATGGAAAAAAAAATAT+AGG + chr5_4:37338759-37338778 Msa0849700:three_prime_UTR 15.0%
!! AACAATAACAAAAACAACAA+GGG - chr5_4:37335586-37335605 None:intergenic 20.0%
!! TAACAATAACAAAAACAACA+AGG - chr5_4:37335587-37335606 None:intergenic 20.0%
!!! TTGTTTTAATGTTGATGTTT+TGG + chr5_4:37335872-37335891 Msa0849700:intron 20.0%
!!! TAAATAATCATTTTTCCACA+TGG - chr5_4:37336283-37336302 None:intergenic 20.0%
!!! ATTTAATTTATCAAATGGCT+GGG + chr5_4:37337383-37337402 Msa0849700:intron 20.0%
!! TTGTAATCTTGAGATATATT+AGG + chr5_4:37337507-37337526 Msa0849700:intron 20.0%
!! TGTAATCTTGAGATATATTA+GGG + chr5_4:37337508-37337527 Msa0849700:intron 20.0%
!! TAAAGAATTTGAATTTAAGC+CGG - chr5_4:37337635-37337654 None:intergenic 20.0%
!! TTCTTTATTGGCATTAAAAT+TGG + chr5_4:37337648-37337667 Msa0849700:intron 20.0%
!! AAAAATCCAGGAAAAATATT+TGG + chr5_4:37338472-37338491 Msa0849700:three_prime_UTR 20.0%
!! GAAAAAAAAATATAGGAAGA+GGG + chr5_4:37338766-37338785 Msa0849700:three_prime_UTR 20.0%
!! AAAAAAAAATATAGGAAGAG+GGG + chr5_4:37338767-37338786 Msa0849700:three_prime_UTR 20.0%
!!! ATTTTTTTAATCTAACCTCA+GGG - chr5_4:37338810-37338829 None:intergenic 20.0%
!! AGACAAAAATTTCATTACAT+AGG - chr5_4:37338958-37338977 None:intergenic 20.0%
!!! TGTTACTTTTTTGAAGTGTT+TGG - chr5_4:37334421-37334440 None:intergenic 25.0%
!! ATTTTCCTAGGATTTGTATT+TGG + chr5_4:37335339-37335358 Msa0849700:CDS 25.0%
!! TTTTCCTAGGATTTGTATTT+GGG + chr5_4:37335340-37335359 Msa0849700:CDS 25.0%
!!! TTTGATGCTTAATTTGCAAT+TGG + chr5_4:37335541-37335560 Msa0849700:CDS 25.0%
!!! TTGATGCTTAATTTGCAATT+GGG + chr5_4:37335542-37335561 Msa0849700:CDS 25.0%
!! ATTATATGTTGGCTATATGT+GGG + chr5_4:37336050-37336069 Msa0849700:CDS 25.0%
! GATATATTATTGTAGCTGTA+TGG + chr5_4:37336645-37336664 Msa0849700:intron 25.0%
! AAATCAAATCGTCTATGAAT+TGG - chr5_4:37336768-37336787 None:intergenic 25.0%
! AAACTTACTTAATAAGATCC+TGG - chr5_4:37336905-37336924 None:intergenic 25.0%
!! GATTTAATTTATCAAATGGC+TGG + chr5_4:37337382-37337401 Msa0849700:intron 25.0%
!! TAAAAGATTTCAACTGATTC+AGG - chr5_4:37337461-37337480 None:intergenic 25.0%
! ATCTCTTGAAAATATCAGAA+AGG + chr5_4:37337583-37337602 Msa0849700:intron 25.0%
! ATTATGTTGGCAAATTAAGT+GGG + chr5_4:37337712-37337731 Msa0849700:intron 25.0%
! CAATCAATGAATTTATTGTC+AGG - chr5_4:37337829-37337848 None:intergenic 25.0%
! TCAACAATCTTTAACAGTTT+AGG - chr5_4:37337996-37338015 None:intergenic 25.0%
! TCTTCAGAAAATCATTAATC+AGG + chr5_4:37338077-37338096 Msa0849700:intron 25.0%
!! TATGATTGCGTTCTATATTT+TGG + chr5_4:37338211-37338230 Msa0849700:CDS 25.0%
!! ATGATTGCGTTCTATATTTT+GGG + chr5_4:37338212-37338231 Msa0849700:CDS 25.0%
! GAAGAATATTCATTGAAGAT+TGG + chr5_4:37338368-37338387 Msa0849700:CDS 25.0%
!! AAACTTCCAAATATTTTTCC+TGG - chr5_4:37338481-37338500 None:intergenic 25.0%
!!! TATTTTTTTTTGAAATGGGG+TGG + chr5_4:37338697-37338716 Msa0849700:three_prime_UTR 25.0%
!!! ATTTTTTTTTGAAATGGGGT+GGG + chr5_4:37338698-37338717 Msa0849700:three_prime_UTR 25.0%
!! GGGACTTATTTAATTTATTG+TGG + chr5_4:37338718-37338737 Msa0849700:three_prime_UTR 25.0%
! AATTTATTGTGGTTACCAAT+AGG + chr5_4:37338729-37338748 Msa0849700:three_prime_UTR 25.0%
! GGAAAAAAAAATATAGGAAG+AGG + chr5_4:37338765-37338784 Msa0849700:three_prime_UTR 25.0%
!!! CATTTTTTTAATCTAACCTC+AGG - chr5_4:37338811-37338830 None:intergenic 25.0%
! GGTTAGATTAAAAAAATGCT+TGG + chr5_4:37338813-37338832 Msa0849700:three_prime_UTR 25.0%
! AATGTACAGTTGTTATACAA+AGG + chr5_4:37338855-37338874 Msa0849700:three_prime_UTR 25.0%
! ATGTACAGTTGTTATACAAA+GGG + chr5_4:37338856-37338875 Msa0849700:three_prime_UTR 25.0%
AGAAAGCAAATAAAGAGAAG+AGG - chr5_4:37334377-37334396 None:intergenic 30.0%
! ATGAAGATTCAACATGGTTT+TGG + chr5_4:37335218-37335237 Msa0849700:CDS 30.0%
! TGAATGAGAAGAATTTTCCT+AGG + chr5_4:37335327-37335346 Msa0849700:CDS 30.0%
ATTTGTATTTGGGAATCTGA+AGG + chr5_4:37335350-37335369 Msa0849700:CDS 30.0%
!! TGATATTGTTGATAATGTCG+AGG + chr5_4:37335394-37335413 Msa0849700:CDS 30.0%
!! CTGGTCAAACTATTTCTAAA+GGG + chr5_4:37335504-37335523 Msa0849700:CDS 30.0%
!! TGATGCTTAATTTGCAATTG+GGG + chr5_4:37335543-37335562 Msa0849700:CDS 30.0%
!! TTAATTTGCAATTGGGGATT+AGG + chr5_4:37335549-37335568 Msa0849700:CDS 30.0%
TCATGTTATGTGTAGATACA+CGG + chr5_4:37335652-37335671 Msa0849700:intron 30.0%
GAGTTATACCTAAAAACAAC+CGG - chr5_4:37335821-37335840 None:intergenic 30.0%
!!! TTAATGTTGATGTTTTGGTG+AGG + chr5_4:37335877-37335896 Msa0849700:intron 30.0%
GACCTGTGTTGAAATTAATT+CGG + chr5_4:37335901-37335920 Msa0849700:intron 30.0%
ACCTGTGTTGAAATTAATTC+GGG + chr5_4:37335902-37335921 Msa0849700:intron 30.0%
! TGAAATTAATTCGGGTGTTT+TGG + chr5_4:37335910-37335929 Msa0849700:intron 30.0%
!! GTTTTGGATGATTTTTGGAT+TGG + chr5_4:37335926-37335945 Msa0849700:intron 30.0%
TTTGATTCTTCAGACATTTG+AGG + chr5_4:37336002-37336021 Msa0849700:intron 30.0%
! GATTATATGTTGGCTATATG+TGG + chr5_4:37336049-37336068 Msa0849700:CDS 30.0%
! TTATATGTTGGCTATATGTG+GGG + chr5_4:37336051-37336070 Msa0849700:CDS 30.0%
AATCATGAATCTGTCATCTT+GGG - chr5_4:37336134-37336153 None:intergenic 30.0%
TAATCATGAATCTGTCATCT+TGG - chr5_4:37336135-37336154 None:intergenic 30.0%
!! GTGTCTTGTTGAATTTTACA+CGG + chr5_4:37336219-37336238 Msa0849700:intron 30.0%
!! TGTCTTGTTGAATTTTACAC+GGG + chr5_4:37336220-37336239 Msa0849700:intron 30.0%
TAAGAACAAAACATACCATG+TGG + chr5_4:37336265-37336284 Msa0849700:intron 30.0%
! ATTTCTGACTTCCAACTTTT+AGG + chr5_4:37336499-37336518 Msa0849700:intron 30.0%
TCCAATAACAATGAAAAGTC+AGG - chr5_4:37336696-37336715 None:intergenic 30.0%
TGTTATTGGAAAATCAGATC+CGG + chr5_4:37336706-37336725 Msa0849700:intron 30.0%
!! CATAGACGATTTGATTTGAA+AGG + chr5_4:37336771-37336790 Msa0849700:CDS 30.0%
AATACGTATCTGACAAGTTA+TGG + chr5_4:37336987-37337006 Msa0849700:intron 30.0%
CTTGGAAAACGAGAAAATTA+TGG + chr5_4:37337047-37337066 Msa0849700:CDS 30.0%
!! AATTATGGACTACAGTCTTT+TGG + chr5_4:37337062-37337081 Msa0849700:CDS 30.0%
TGACAACACTTATGACAAAA+TGG + chr5_4:37337104-37337123 Msa0849700:CDS 30.0%
GACAACACTTATGACAAAAT+GGG + chr5_4:37337105-37337124 Msa0849700:CDS 30.0%
ACAACACTTATGACAAAATG+GGG + chr5_4:37337106-37337125 Msa0849700:CDS 30.0%
CTAGTTCAAATTAGTGTAGA+TGG + chr5_4:37337349-37337368 Msa0849700:intron 30.0%
!! AAGCTTTTCCAATTTAGCTT+TGG - chr5_4:37337427-37337446 None:intergenic 30.0%
ATCAGAAAGGAATAAGTTGT+AGG + chr5_4:37337596-37337615 Msa0849700:intron 30.0%
! GTAAGTAGTTTGCATTATGT+TGG + chr5_4:37337699-37337718 Msa0849700:intron 30.0%
CATTATGTTGGCAAATTAAG+TGG + chr5_4:37337711-37337730 Msa0849700:intron 30.0%
AAAGAACATGAATGCAAAGA+AGG - chr5_4:37337871-37337890 None:intergenic 30.0%
GTTGTCTGTATATGGTATAT+GGG - chr5_4:37337904-37337923 None:intergenic 30.0%
TGTTGTCTGTATATGGTATA+TGG - chr5_4:37337905-37337924 None:intergenic 30.0%
CTGAAATTGTTGTCTGTATA+TGG - chr5_4:37337912-37337931 None:intergenic 30.0%
CTTAATACATGTCACGAAAT+TGG - chr5_4:37338044-37338063 None:intergenic 30.0%
TTTCGTGACATGTATTAAGT+AGG + chr5_4:37338045-37338064 Msa0849700:intron 30.0%
AGAAAATCATTAATCAGGCT+AGG + chr5_4:37338082-37338101 Msa0849700:intron 30.0%
!! GATTTTGATCAATACACCAA+TGG + chr5_4:37338148-37338167 Msa0849700:CDS 30.0%
! TGATTGCGTTCTATATTTTG+GGG + chr5_4:37338213-37338232 Msa0849700:CDS 30.0%
ATCCAAAGCTATACTCAAAA+AGG + chr5_4:37338329-37338348 Msa0849700:CDS 30.0%
!!! AACCTTTTTGAGTATAGCTT+TGG - chr5_4:37338334-37338353 None:intergenic 30.0%
! AAAAGGTTTCGAGATTTTGT+TGG + chr5_4:37338346-37338365 Msa0849700:CDS 30.0%
! TATCCTCATTTTGTACTAAC+TGG - chr5_4:37338404-37338423 None:intergenic 30.0%
GATAAAATATCTTCTCCTGA+AGG + chr5_4:37338420-37338439 Msa0849700:three_prime_UTR 30.0%
TTTGTGATCATCATGATTCA+TGG - chr5_4:37338455-37338474 None:intergenic 30.0%
CCATCATATTCATATCCTAT+TGG - chr5_4:37338747-37338766 None:intergenic 30.0%
CCAATAGGATATGAATATGA+TGG + chr5_4:37338744-37338763 Msa0849700:three_prime_UTR 30.0%
TTCGAAAATGAGTGATACAG+TGG + chr5_4:37334533-37334552 Msa0849700:exon 35.0%
AAGAATGGGAATGAGTATGT+TGG + chr5_4:37335089-37335108 Msa0849700:CDS 35.0%
TTCATAACACCTTGTCCTTT+CGG - chr5_4:37335203-37335222 None:intergenic 35.0%
! GGTGTTATGAAGATTCAACA+TGG + chr5_4:37335212-37335231 Msa0849700:CDS 35.0%
!!! AAGATTCAACATGGTTTTGG+TGG + chr5_4:37335221-37335240 Msa0849700:CDS 35.0%
!!! AGATTCAACATGGTTTTGGT+GGG + chr5_4:37335222-37335241 Msa0849700:CDS 35.0%
TCTGTTGATACTACTGTTAG+TGG + chr5_4:37335293-37335312 Msa0849700:CDS 35.0%
ATACTACTGTTAGTGGTAGA+GGG + chr5_4:37335300-37335319 Msa0849700:CDS 35.0%
GATTCCCAAATACAAATCCT+AGG - chr5_4:37335347-37335366 None:intergenic 35.0%
! CCTTTAGAAATAGTTTGACC+AGG - chr5_4:37335506-37335525 None:intergenic 35.0%
!! CCTGGTCAAACTATTTCTAA+AGG + chr5_4:37335503-37335522 Msa0849700:CDS 35.0%
TTATGTGTAGATACACGGTT+GGG + chr5_4:37335657-37335676 Msa0849700:intron 35.0%
!! ACCTAGTGATTTTGATCCTA+AGG + chr5_4:37335709-37335728 Msa0849700:CDS 35.0%
TCCTTAGGATCAAAATCACT+AGG - chr5_4:37335713-37335732 None:intergenic 35.0%
!!! ATTACTGTCCGGTTGTTTTT+AGG + chr5_4:37335810-37335829 Msa0849700:CDS 35.0%
ACCCGAATTAATTTCAACAC+AGG - chr5_4:37335906-37335925 None:intergenic 35.0%
! TGATCCTGCTGATTATATGT+TGG + chr5_4:37336039-37336058 Msa0849700:CDS 35.0%
ATAGCCAACATATAATCAGC+AGG - chr5_4:37336046-37336065 None:intergenic 35.0%
! AGTGAAGAAATCTGAAGTCA+AGG + chr5_4:37336159-37336178 Msa0849700:CDS 35.0%
! TGTTGAATTTTACACGGGTT+TGG + chr5_4:37336225-37336244 Msa0849700:intron 35.0%
! GTTGAATTTTACACGGGTTT+GGG + chr5_4:37336226-37336245 Msa0849700:intron 35.0%
CTTACAAAACCTAAGTTGTC+TGG - chr5_4:37336356-37336375 None:intergenic 35.0%
!! CAGACAACTTAGGTTTTGTA+AGG + chr5_4:37336354-37336373 Msa0849700:intron 35.0%
!! ACAACTTAGGTTTTGTAAGG+AGG + chr5_4:37336357-37336376 Msa0849700:intron 35.0%
GTAAGAATCTACGTTTAACC+GGG - chr5_4:37336413-37336432 None:intergenic 35.0%
GGTAAGAATCTACGTTTAAC+CGG - chr5_4:37336414-37336433 None:intergenic 35.0%
! TGCGTAACTTGCGTTATAAA+AGG - chr5_4:37336435-37336454 None:intergenic 35.0%
GTTACGCAATTACAAGTCTT+TGG + chr5_4:37336447-37336466 Msa0849700:intron 35.0%
GTCCAAATATGAGAATTCAC+TGG + chr5_4:37336559-37336578 Msa0849700:CDS 35.0%
CACCAGTGAATTCTCATATT+TGG - chr5_4:37336564-37336583 None:intergenic 35.0%
TCACTGGTGACAAAATTCTT+TGG + chr5_4:37336575-37336594 Msa0849700:CDS 35.0%
CACTGGTGACAAAATTCTTT+GGG + chr5_4:37336576-37336595 Msa0849700:CDS 35.0%
ACTGGTGACAAAATTCTTTG+GGG + chr5_4:37336577-37336596 Msa0849700:CDS 35.0%
GTACATTGTGTGAAACCTAT+TGG + chr5_4:37336599-37336618 Msa0849700:CDS 35.0%
! ATCTATCGATCCATACCTTT+TGG - chr5_4:37336628-37336647 None:intergenic 35.0%
! GCCTGACTTTTCATTGTTAT+TGG + chr5_4:37336692-37336711 Msa0849700:intron 35.0%
GATTTGAAAGGATCTTCACA+TGG + chr5_4:37336783-37336802 Msa0849700:CDS 35.0%
GAAACACATAGTTCAGATCA+AGG - chr5_4:37336863-37336882 None:intergenic 35.0%
TGTTTCGTGTACAACGAAAT+TGG + chr5_4:37336877-37336896 Msa0849700:CDS 35.0%
CGTATTCTATAACGATTCAC+TGG - chr5_4:37336973-37336992 None:intergenic 35.0%
TGTTGTCATCACGAAAATGA+AGG - chr5_4:37337092-37337111 None:intergenic 35.0%
AACACTCACTATAGAGCATA+TGG + chr5_4:37337164-37337183 Msa0849700:intron 35.0%
CACTATAGAGCATATGGTTA+TGG + chr5_4:37337170-37337189 Msa0849700:intron 35.0%
AGAATCCTGATTGCCTAAAA+GGG - chr5_4:37337232-37337251 None:intergenic 35.0%
AAGAATCCTGATTGCCTAAA+AGG - chr5_4:37337233-37337252 None:intergenic 35.0%
ACTTGCAACCAAAGCTAAAT+TGG + chr5_4:37337416-37337435 Msa0849700:intron 35.0%
AGCTAAATTGGAAAAGCTTC+AGG + chr5_4:37337428-37337447 Msa0849700:intron 35.0%
GCTAAATTGGAAAAGCTTCA+GGG + chr5_4:37337429-37337448 Msa0849700:intron 35.0%
CTAAATTGGAAAAGCTTCAG+GGG + chr5_4:37337430-37337449 Msa0849700:intron 35.0%
!! TTAAGTGGGTATAGTTTTGC+AGG + chr5_4:37337726-37337745 Msa0849700:intron 35.0%
TTGCAGGAAATAGTTGTTTG+TGG + chr5_4:37337742-37337761 Msa0849700:intron 35.0%
TGCAGGAAATAGTTGTTTGT+GGG + chr5_4:37337743-37337762 Msa0849700:intron 35.0%
TTTGATCAATACACCAATGG+TGG + chr5_4:37338151-37338170 Msa0849700:CDS 35.0%
CATTTGAATCCTTATAGCAG+CGG + chr5_4:37338181-37338200 Msa0849700:CDS 35.0%
ATTTGAATCCTTATAGCAGC+GGG + chr5_4:37338182-37338201 Msa0849700:CDS 35.0%
! TGGGGTTATCGATATTTTAC+AGG + chr5_4:37338231-37338250 Msa0849700:CDS 35.0%
TGACCAGTTAGTACAAAATG+AGG + chr5_4:37338398-37338417 Msa0849700:three_prime_UTR 35.0%
! TCATGGCATTTTTAACCTTC+AGG - chr5_4:37338438-37338457 None:intergenic 35.0%
CATGATGATCACAAAAATCC+AGG + chr5_4:37338460-37338479 Msa0849700:three_prime_UTR 35.0%
CTGATGAACAGTAAACTCTA+AGG - chr5_4:37338527-37338546 None:intergenic 35.0%
TTCATCAGATCACTGTAAGT+GGG + chr5_4:37338539-37338558 Msa0849700:three_prime_UTR 35.0%
AACTCAAGTGAGATTCTTTG+AGG - chr5_4:37338566-37338585 None:intergenic 35.0%
TCAAAGAATCTCACTTGAGT+TGG + chr5_4:37338565-37338584 Msa0849700:three_prime_UTR 35.0%
!!! CTTGAGTTGGTGTTGTTTTT+TGG + chr5_4:37338578-37338597 Msa0849700:three_prime_UTR 35.0%
AGCAAAGCAAATCATCATCA+TGG - chr5_4:37338623-37338642 None:intergenic 35.0%
!! ATGATGATGATTTGCTTTGC+TGG + chr5_4:37338622-37338641 Msa0849700:three_prime_UTR 35.0%
TACAGTTGTTATACAAAGGG+TGG + chr5_4:37338859-37338878 Msa0849700:three_prime_UTR 35.0%
GTGTTTGGAGAAAAACGAGT+GGG - chr5_4:37334406-37334425 None:intergenic 40.0%
AGTGTTTGGAGAAAAACGAG+TGG - chr5_4:37334407-37334426 None:intergenic 40.0%
TAAAAAAAAAACCTCGCCGC+CGG + chr5_4:37334455-37334474 Msa0849700:five_prime_UTR 40.0%
! TCAATGCTCAGTGCATTTTC+CGG - chr5_4:37334492-37334511 None:intergenic 40.0%
!! GAAGGTTTGTTTTCCTTCTC+CGG - chr5_4:37334612-37334631 None:intergenic 40.0%
ATGGAAACGTGGAAAAGCTT+CGG + chr5_4:37334839-37334858 Msa0849700:CDS 40.0%
CGAACGGTGATTTATACGAA+GGG + chr5_4:37335021-37335040 Msa0849700:CDS 40.0%
GACGTTACGTTTGGAAGAAT+GGG + chr5_4:37335075-37335094 Msa0849700:CDS 40.0%
! GGAATGAGTATGTTGGTGAA+TGG + chr5_4:37335096-37335115 Msa0849700:CDS 40.0%
! TATGTTGGTGAATGGCGTAA+CGG + chr5_4:37335104-37335123 Msa0849700:CDS 40.0%
! GGTTCGTTAGTTTGGGTTAA+CGG + chr5_4:37335143-37335162 Msa0849700:CDS 40.0%
!!! ATGGTTTTGGTGGGTTTGTT+TGG + chr5_4:37335231-37335250 Msa0849700:CDS 40.0%
AACGTTTCCTCATCAACACA+GGG - chr5_4:37335271-37335290 None:intergenic 40.0%
GATACTACTGTTAGTGGTAG+AGG + chr5_4:37335299-37335318 Msa0849700:CDS 40.0%
! GGATGTTTTCGAAACTCATC+AGG - chr5_4:37335455-37335474 None:intergenic 40.0%
!! TCCTTGTTGTTTCTCTTCTG+AGG + chr5_4:37335472-37335491 Msa0849700:CDS 40.0%
ACCTCAGAAGAGAAACAACA+AGG - chr5_4:37335476-37335495 None:intergenic 40.0%
GTTATGTGTAGATACACGGT+TGG + chr5_4:37335656-37335675 Msa0849700:intron 40.0%
TTGATCCTAAGGAGAAGTTC+TGG + chr5_4:37335720-37335739 Msa0849700:CDS 40.0%
GTAATCTTGGATCCTTCACT+CGG - chr5_4:37335755-37335774 None:intergenic 40.0%
TCGATGGAAAGATTACTGTC+CGG + chr5_4:37335799-37335818 Msa0849700:CDS 40.0%
!! CGGGTGTTTTGGATGATTTT+TGG + chr5_4:37335921-37335940 Msa0849700:intron 40.0%
! ACATTTGAGGAAGCTGTTTC+AGG + chr5_4:37336015-37336034 Msa0849700:CDS 40.0%
CGATTTGACTAACAGTTGAC+TGG - chr5_4:37336325-37336344 None:intergenic 40.0%
GTTAGTAGACCAGACAACTT+AGG + chr5_4:37336344-37336363 Msa0849700:intron 40.0%
!! TTAGGTTTTGTAAGGAGGTC+TGG + chr5_4:37336362-37336381 Msa0849700:intron 40.0%
TTGTCGCTATTCGAATATCC+CGG + chr5_4:37336392-37336411 Msa0849700:intron 40.0%
!! CCAACTTTTAGGTGCTTCTT+CGG + chr5_4:37336510-37336529 Msa0849700:intron 40.0%
CATTGTGTGAAACCTATTGG+AGG + chr5_4:37336602-37336621 Msa0849700:CDS 40.0%
ACAATGAAAAGTCAGGCACA+GGG - chr5_4:37336689-37336708 None:intergenic 40.0%
AACAATGAAAAGTCAGGCAC+AGG - chr5_4:37336690-37336709 None:intergenic 40.0%
TCAGATCCGGTTTATTGTGA+TGG + chr5_4:37336719-37336738 Msa0849700:intron 40.0%
CAGATCCGGTTTATTGTGAT+GGG + chr5_4:37336720-37336739 Msa0849700:intron 40.0%
GATTGCCCATCACAATAAAC+CGG - chr5_4:37336728-37336747 None:intergenic 40.0%
GTTTCATCAATCTCATCCTC+AGG - chr5_4:37336825-37336844 None:intergenic 40.0%
GTTCAGATCAAGGTCTTTGA+GGG - chr5_4:37336853-37336872 None:intergenic 40.0%
AGTTCAGATCAAGGTCTTTG+AGG - chr5_4:37336854-37336873 None:intergenic 40.0%
TGTACAACGAAATTGGTACC+AGG + chr5_4:37336884-37336903 Msa0849700:CDS 40.0%
TGTGTTCCAGACAAATTGAG+CGG + chr5_4:37337013-37337032 Msa0849700:intron 40.0%
!! ATGGACTACAGTCTTTTGGT+TGG + chr5_4:37337066-37337085 Msa0849700:CDS 40.0%
ATACCAGTGCGTAGAAGAAA+AGG - chr5_4:37337138-37337157 None:intergenic 40.0%
! GCGATATTCTTTCCCCTTTT+AGG + chr5_4:37337216-37337235 Msa0849700:intron 40.0%
GAATCCTGATTGCCTAAAAG+GGG - chr5_4:37337231-37337250 None:intergenic 40.0%
GATAGGGATCGAGTTAAATC+TGG + chr5_4:37337306-37337325 Msa0849700:CDS 40.0%
TATATTAGGGCTTGTGCTGT+TGG + chr5_4:37337521-37337540 Msa0849700:intron 40.0%
TTTCTGTTACTCTGTGTGTG+TGG + chr5_4:37337933-37337952 Msa0849700:intron 40.0%
CGCTGCTATAAGGATTCAAA+TGG - chr5_4:37338183-37338202 None:intergenic 40.0%
TTTGAATCCTTATAGCAGCG+GGG + chr5_4:37338183-37338202 Msa0849700:CDS 40.0%
TTGAAACCCACTTGCAAAAG+AGG + chr5_4:37338499-37338518 Msa0849700:three_prime_UTR 40.0%
TGAAACCCACTTGCAAAAGA+GGG + chr5_4:37338500-37338519 Msa0849700:three_prime_UTR 40.0%
GTTCATCAGATCACTGTAAG+TGG + chr5_4:37338538-37338557 Msa0849700:three_prime_UTR 40.0%
TCATCAGATCACTGTAAGTG+GGG + chr5_4:37338540-37338559 Msa0849700:three_prime_UTR 40.0%
!! ATGATTTGCTTTGCTGGATC+AGG + chr5_4:37338628-37338647 Msa0849700:three_prime_UTR 40.0%
!! TGATTTGCTTTGCTGGATCA+GGG + chr5_4:37338629-37338648 Msa0849700:three_prime_UTR 40.0%
AAATATAGGAAGAGGGGTGA+AGG + chr5_4:37338773-37338792 Msa0849700:three_prime_UTR 40.0%
AATATAGGAAGAGGGGTGAA+GGG + chr5_4:37338774-37338793 Msa0849700:three_prime_UTR 40.0%
AAGGGAAAATTGTTTCCCTG+AGG + chr5_4:37338792-37338811 Msa0849700:three_prime_UTR 40.0%
GTTGTTATACAAAGGGTGGA+TGG + chr5_4:37338863-37338882 Msa0849700:three_prime_UTR 40.0%
!! ACTGAGCATTGATTTCTCGC+CGG + chr5_4:37334500-37334519 Msa0849700:five_prime_UTR 45.0%
GGTGAACGATGAAGTTGTTG+AGG + chr5_4:37334554-37334573 Msa0849700:CDS 45.0%
GAAGAGCAACATTCCTGAAC+CGG + chr5_4:37334590-37334609 Msa0849700:CDS 45.0%
! TTGTTTTCCTTCTCCGGTTC+AGG - chr5_4:37334606-37334625 None:intergenic 45.0%
GGAAAACAAACCTTCTCCAC+CGG + chr5_4:37334617-37334636 Msa0849700:CDS 45.0%
CTCAACAACGGATCTACCAT+CGG - chr5_4:37334715-37334734 None:intergenic 45.0%
!! CGGAAGTACTCTCTCAACAA+CGG - chr5_4:37334727-37334746 None:intergenic 45.0%
!! GTTGAGAGAGTACTTCCGAA+CGG + chr5_4:37334729-37334748 Msa0849700:CDS 45.0%
AGATACTTCCCGGATCCATT+CGG - chr5_4:37334789-37334808 None:intergenic 45.0%
!! ATGGATCCGGGAAGTATCTA+TGG + chr5_4:37334790-37334809 Msa0849700:CDS 45.0%
GTTGCATGTACGAAGGTGAA+TGG + chr5_4:37334820-37334839 Msa0849700:CDS 45.0%
TACGAAGGTGAATGGAAACG+TGG + chr5_4:37334828-37334847 Msa0849700:CDS 45.0%
TGGAAACGTGGAAAAGCTTC+GGG + chr5_4:37334840-37334859 Msa0849700:CDS 45.0%
TTACGAGGGAGAGTTCAAGT+CGG + chr5_4:37334896-37334915 Msa0849700:CDS 45.0%
GAAGGATTCGGAACATTCGT+TGG + chr5_4:37334927-37334946 Msa0849700:CDS 45.0%
TGGAGCTCCGATAGAAAACA+CGG + chr5_4:37334978-37334997 Msa0849700:CDS 45.0%
TCCGATAGAAAACACGGGTT+CGG + chr5_4:37334984-37335003 Msa0849700:CDS 45.0%
! ACCGAACCCGTGTTTTCTAT+CGG - chr5_4:37334988-37335007 None:intergenic 45.0%
GCGAACGGTGATTTATACGA+AGG + chr5_4:37335020-37335039 Msa0849700:CDS 45.0%
ACGGTGATTTATACGAAGGG+TGG + chr5_4:37335024-37335043 Msa0849700:CDS 45.0%
GTGATTTATACGAAGGGTGG+TGG + chr5_4:37335027-37335046 Msa0849700:CDS 45.0%
! TGGAAGCGTAACGTTCAAGA+TGG + chr5_4:37335047-37335066 Msa0849700:CDS 45.0%
CGTAACGTTCAAGATGGTCA+AGG + chr5_4:37335053-37335072 Msa0849700:CDS 45.0%
ATGGTCAAGGACGTTACGTT+TGG + chr5_4:37335066-37335085 Msa0849700:CDS 45.0%
GGACGTTACGTTTGGAAGAA+TGG + chr5_4:37335074-37335093 Msa0849700:CDS 45.0%
TAACGGCGTTATATCTGGGA+AGG + chr5_4:37335121-37335140 Msa0849700:CDS 45.0%
AACGGCGTTATATCTGGGAA+GGG + chr5_4:37335122-37335141 Msa0849700:CDS 45.0%
! TGGGAAGGGTTCGTTAGTTT+GGG + chr5_4:37335136-37335155 Msa0849700:CDS 45.0%
TTGGGTTAACGGAAACCGTT+TGG + chr5_4:37335154-37335173 Msa0849700:CDS 45.0%
GTTAACGGAAACCGTTTGGA+GGG + chr5_4:37335158-37335177 Msa0849700:CDS 45.0%
AAACCGTTTGGAGGGTTTGT+GGG + chr5_4:37335166-37335185 Msa0849700:CDS 45.0%
AATGGTGTTCCGAAAGGACA+AGG + chr5_4:37335191-37335210 Msa0849700:CDS 45.0%
!! ATTTTGCCCCTGTGTTGATG+AGG + chr5_4:37335261-37335280 Msa0849700:CDS 45.0%
ACGTTTCCTCATCAACACAG+GGG - chr5_4:37335270-37335289 None:intergenic 45.0%
GAACGTTTCCTCATCAACAC+AGG - chr5_4:37335272-37335291 None:intergenic 45.0%
! GCTTCGATGTTTTATCGCGA+TGG + chr5_4:37335416-37335435 Msa0849700:CDS 45.0%
!! TCTTCTGAGGTTAAGAGACC+TGG + chr5_4:37335485-37335504 Msa0849700:CDS 45.0%
CTTGTCCAGAACTTCTCCTT+AGG - chr5_4:37335728-37335747 None:intergenic 45.0%
!! CTAAGGAGAAGTTCTGGACA+AGG + chr5_4:37335726-37335745 Msa0849700:CDS 45.0%
ATCTTTCCATCGAAACTCCG+CGG - chr5_4:37335792-37335811 None:intergenic 45.0%
CTTAGAGAACTTTCCTCTCC+CGG + chr5_4:37336082-37336101 Msa0849700:CDS 45.0%
TTAGAGAACTTTCCTCTCCC+GGG + chr5_4:37336083-37336102 Msa0849700:CDS 45.0%
!! AAAACACTTCCGCTTTTCCC+GGG - chr5_4:37336103-37336122 None:intergenic 45.0%
!! GAAAACACTTCCGCTTTTCC+CGG - chr5_4:37336104-37336123 None:intergenic 45.0%
!! CCGAAGAAGCACCTAAAAGT+TGG - chr5_4:37336513-37336532 None:intergenic 45.0%
GAAACCTATTGGAGGCCAAA+AGG + chr5_4:37336610-37336629 Msa0849700:CDS 45.0%
! CATACCTTTTGGCCTCCAAT+AGG - chr5_4:37336617-37336636 None:intergenic 45.0%
CTATTGGAGGCCAAAAGGTA+TGG + chr5_4:37336615-37336634 Msa0849700:intron 45.0%
TCGTGCAACAGATAAACCTG+AGG + chr5_4:37336806-37336825 Msa0849700:CDS 45.0%
GTGTTCCAGACAAATTGAGC+GGG + chr5_4:37337014-37337033 Msa0849700:intron 45.0%
ACAATCCCGCTCAATTTGTC+TGG - chr5_4:37337022-37337041 None:intergenic 45.0%
! TCACCTTTTCTTCTACGCAC+TGG + chr5_4:37337132-37337151 Msa0849700:CDS 45.0%
! CTTTCCCCTTTTAGGCAATC+AGG + chr5_4:37337224-37337243 Msa0849700:intron 45.0%
CATACTGAGAAGTTCATGCG+TGG + chr5_4:37337255-37337274 Msa0849700:CDS 45.0%
TCGAAGCAGAGTTGCAAGAT+AGG + chr5_4:37337289-37337308 Msa0849700:CDS 45.0%
CGAAGCAGAGTTGCAAGATA+GGG + chr5_4:37337290-37337309 Msa0849700:CDS 45.0%
GGGATCGAGTTAAATCTGGA+AGG + chr5_4:37337310-37337329 Msa0849700:CDS 45.0%
TTTAAGCCGGCATGTGTTAC+AGG - chr5_4:37337622-37337641 None:intergenic 45.0%
TTCTGCTCTTGCTGGCATAT+TGG - chr5_4:37338110-37338129 None:intergenic 45.0%
ATATGCCAGCAAGAGCAGAA+CGG + chr5_4:37338110-37338129 Msa0849700:CDS 45.0%
! CAAATGGCTGATTCCACCAT+TGG - chr5_4:37338167-37338186 None:intergenic 45.0%
! AAGGTCCCTCTTTTGCAAGT+GGG - chr5_4:37338508-37338527 None:intergenic 45.0%
! TAAGGTCCCTCTTTTGCAAG+TGG - chr5_4:37338509-37338528 None:intergenic 45.0%
CAACATTCCTGAACCGGAGA+AGG + chr5_4:37334596-37334615 Msa0849700:CDS 50.0%
AAACAAACCTTCTCCACCGG+CGG + chr5_4:37334620-37334639 Msa0849700:CDS 50.0%
GTCTACCACCTCCTTGTGAA+CGG - chr5_4:37334662-37334681 None:intergenic 50.0%
TTCTACGCCGGAAGTTTCTC+CGG + chr5_4:37334756-37334775 Msa0849700:CDS 50.0%
TACGTTGCCGGAGAAACTTC+CGG - chr5_4:37334766-37334785 None:intergenic 50.0%
GTCGGTCCATAGATACTTCC+CGG - chr5_4:37334799-37334818 None:intergenic 50.0%
!! GGGAAGTATCTATGGACCGA+CGG + chr5_4:37334798-37334817 Msa0849700:CDS 50.0%
ACCTTCGTACATGCAACCGT+CGG - chr5_4:37334817-37334836 None:intergenic 50.0%
GGAAACGTGGAAAAGCTTCG+GGG + chr5_4:37334841-37334860 Msa0849700:CDS 50.0%
GTGGAAAAGCTTCGGGGAAA+GGG + chr5_4:37334847-37334866 Msa0849700:CDS 50.0%
! CGGGGAAAGGGAAGTTTTCA+TGG + chr5_4:37334859-37334878 Msa0849700:CDS 50.0%
! GGGAAGTTTTCATGGCCTTC+AGG + chr5_4:37334867-37334886 Msa0849700:CDS 50.0%
TACGAGGGAGAGTTCAAGTC+GGG + chr5_4:37334897-37334916 Msa0849700:CDS 50.0%
AGAGTTCAAGTCGGGTCGAA+TGG + chr5_4:37334905-37334924 Msa0849700:CDS 50.0%
TTCAAGTCGGGTCGAATGGA+AGG + chr5_4:37334909-37334928 Msa0849700:CDS 50.0%
TCGGGTCGAATGGAAGGATT+CGG + chr5_4:37334915-37334934 Msa0849700:CDS 50.0%
GGAACATTCGTTGGATCCGA+CGG + chr5_4:37334936-37334955 Msa0849700:CDS 50.0%
TCCGACGGTGATACATATCG+CGG + chr5_4:37334951-37334970 Msa0849700:CDS 50.0%
GGAGCTCCGATAGAAAACAC+GGG + chr5_4:37334979-37334998 Msa0849700:CDS 50.0%
GGTCAGAAACGTTACGCGAA+CGG + chr5_4:37335005-37335024 Msa0849700:CDS 50.0%
TGGCGTAACGGCGTTATATC+TGG + chr5_4:37335116-37335135 Msa0849700:CDS 50.0%
GGCGTAACGGCGTTATATCT+GGG + chr5_4:37335117-37335136 Msa0849700:CDS 50.0%
CTGGGAAGGGTTCGTTAGTT+TGG + chr5_4:37335135-37335154 Msa0849700:CDS 50.0%
GGTTAACGGAAACCGTTTGG+AGG + chr5_4:37335157-37335176 Msa0849700:CDS 50.0%
GAAACCGTTTGGAGGGTTTG+TGG + chr5_4:37335165-37335184 Msa0849700:CDS 50.0%
TCTCCCACAAACCCTCCAAA+CGG - chr5_4:37335172-37335191 None:intergenic 50.0%
TTGGAGGGTTTGTGGGAGAA+TGG + chr5_4:37335173-37335192 Msa0849700:CDS 50.0%
TGGGAGAATGGTGTTCCGAA+AGG + chr5_4:37335185-37335204 Msa0849700:CDS 50.0%
TGGGAATCTGAAGGTGAAGC+TGG + chr5_4:37335359-37335378 Msa0849700:CDS 50.0%
GTGTAGATACACGGTTGGGA+AGG + chr5_4:37335661-37335680 Msa0849700:intron 50.0%
TGGACAAGGTTTCCGAGTGA+AGG + chr5_4:37335740-37335759 Msa0849700:CDS 50.0%
TTGATGAGGCGGGGTAATCT+TGG - chr5_4:37335768-37335787 None:intergenic 50.0%
ATCAAACCGCGGAGTTTCGA+TGG + chr5_4:37335783-37335802 Msa0849700:CDS 50.0%
AGTCAGGCACAGGGAAACAT+GGG - chr5_4:37336680-37336699 None:intergenic 50.0%
AAGTCAGGCACAGGGAAACA+TGG - chr5_4:37336681-37336700 None:intergenic 50.0%
! CAGATCAAGGTCTTTGAGGG+TGG - chr5_4:37336850-37336869 None:intergenic 50.0%
TGAGCGGGATTGTGAGTTCT+TGG + chr5_4:37337029-37337048 Msa0849700:CDS 50.0%
TGTAGGCCTGTAACACATGC+CGG + chr5_4:37337613-37337632 Msa0849700:intron 50.0%
TGTGGGACATATGCAAGCTG+TGG + chr5_4:37337760-37337779 Msa0849700:intron 50.0%
! TTTTCCGGCGAGATTCGTGC+CGG - chr5_4:37334477-37334496 None:intergenic 55.0%
CTTCTTCCAGCAATCACCGC+CGG - chr5_4:37334639-37334658 None:intergenic 55.0%
GCTGGAAGAAGCCGTTCACA+AGG + chr5_4:37334648-37334667 Msa0849700:CDS 55.0%
GGAAGAAGCCGTTCACAAGG+AGG + chr5_4:37334651-37334670 Msa0849700:CDS 55.0%
AGAAGCCGTTCACAAGGAGG+TGG + chr5_4:37334654-37334673 Msa0849700:CDS 55.0%
AGTGACACCGACGAGCTTCA+CGG + chr5_4:37334683-37334702 Msa0849700:CDS 55.0%
GAAACCACCGTGAAGCTCGT+CGG - chr5_4:37334693-37334712 None:intergenic 55.0%
AGCTTCACGGTGGTTTCCGA+TGG + chr5_4:37334696-37334715 Msa0849700:CDS 55.0%
CCGGCGTAGAAATCTCCGTT+CGG - chr5_4:37334747-37334766 None:intergenic 55.0%
CCGAACGGAGATTTCTACGC+CGG + chr5_4:37334744-37334763 Msa0849700:CDS 55.0%
TTCTCCGGCAACGTACCGAA+TGG + chr5_4:37334771-37334790 Msa0849700:CDS 55.0%
GGATCCATTCGGTACGTTGC+CGG - chr5_4:37334778-37334797 None:intergenic 55.0%
GGCAACGTACCGAATGGATC+CGG + chr5_4:37334777-37334796 Msa0849700:CDS 55.0%
GCAACGTACCGAATGGATCC+GGG + chr5_4:37334778-37334797 Msa0849700:CDS 55.0%
ACCGACGGTTGCATGTACGA+AGG + chr5_4:37334813-37334832 Msa0849700:CDS 55.0%
CGTGGAAAAGCTTCGGGGAA+AGG + chr5_4:37334846-37334865 Msa0849700:CDS 55.0%
CCCGCGATATGTATCACCGT+CGG - chr5_4:37334955-37334974 None:intergenic 55.0%
CCGACGGTGATACATATCGC+GGG + chr5_4:37334952-37334971 Msa0849700:CDS 55.0%
GTGATACATATCGCGGGTCG+TGG + chr5_4:37334958-37334977 Msa0849700:CDS 55.0%
AACTCCGCGGTTTGATGAGG+CGG - chr5_4:37335779-37335798 None:intergenic 55.0%
CGAAACTCCGCGGTTTGATG+AGG - chr5_4:37335782-37335801 None:intergenic 55.0%
CTTTCCTCTCCCGGGAAAAG+CGG + chr5_4:37336091-37336110 Msa0849700:CDS 55.0%
CAAGAGCAGAACGGTTGGCA+AGG + chr5_4:37338119-37338138 Msa0849700:CDS 55.0%
GAATCCTTATAGCAGCGGGG+AGG + chr5_4:37338186-37338205 Msa0849700:CDS 55.0%
TAAGCCTCCCCGCTGCTATA+AGG - chr5_4:37338193-37338212 None:intergenic 55.0%
CCTTCAGGCGCGACTTACGA+GGG + chr5_4:37334882-37334901 Msa0849700:CDS 60.0%
TACCCCGCCTCATCAAACCG+CGG + chr5_4:37335772-37335791 Msa0849700:CDS 60.0%
ACTCCGCGGTTTGATGAGGC+GGG - chr5_4:37335778-37335797 None:intergenic 60.0%
!! ACTTCCGCTTTTCCCGGGAG+AGG - chr5_4:37336098-37336117 None:intergenic 60.0%
GCCAGCAAGAGCAGAACGGT+TGG + chr5_4:37338114-37338133 Msa0849700:CDS 60.0%
GCCAACCGTTCTGCTCTTGC+TGG - chr5_4:37338118-37338137 None:intergenic 60.0%
GAGCAGAACGGTTGGCAAGG+AGG + chr5_4:37338122-37338141 Msa0849700:CDS 60.0%
GCAATCACCGCCGGTGGAGA+AGG - chr5_4:37334630-37334649 None:intergenic 65.0%
TCTCCACCGGCGGTGATTGC+TGG + chr5_4:37334630-37334649 Msa0849700:CDS 65.0%
CTTCCAGCAATCACCGCCGG+TGG - chr5_4:37334636-37334655 None:intergenic 65.0%
GACACCGACGAGCTTCACGG+TGG + chr5_4:37334686-37334705 Msa0849700:CDS 65.0%
GCCTTCAGGCGCGACTTACG+AGG + chr5_4:37334881-37334900 Msa0849700:CDS 65.0%
CCCTCGTAAGTCGCGCCTGA+AGG - chr5_4:37334885-37334904 None:intergenic 65.0%
CTCCGCGGTTTGATGAGGCG+GGG - chr5_4:37335777-37335796 None:intergenic 65.0%
TCCGGCGAGATTCGTGCCGG+CGG - chr5_4:37334474-37334493 None:intergenic 70.0%
! CGAGATTCGTGCCGGCGGCG+AGG - chr5_4:37334469-37334488 None:intergenic 75.0%
GCCGCCGGCACGAATCTCGC+CGG + chr5_4:37334470-37334489 Msa0849700:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 37334352 37338980 37334352 ID=Msa0849700;Name=Msa0849700
chr5_4 mRNA 37334352 37338980 37334352 ID=Msa0849700-mRNA-1;Parent=Msa0849700;Name=Msa0849700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=188|1|1|1|1|1|8|587|733
chr5_4 exon 37334352 37335570 37334352 ID=Msa0849700-mRNA-1:exon:12145;Parent=Msa0849700-mRNA-1
chr5_4 exon 37335667 37335831 37335667 ID=Msa0849700-mRNA-1:exon:12146;Parent=Msa0849700-mRNA-1
chr5_4 exon 37336015 37336180 37336015 ID=Msa0849700-mRNA-1:exon:12147;Parent=Msa0849700-mRNA-1
chr5_4 exon 37336521 37336631 37336521 ID=Msa0849700-mRNA-1:exon:12148;Parent=Msa0849700-mRNA-1
chr5_4 exon 37336723 37336916 37336723 ID=Msa0849700-mRNA-1:exon:12149;Parent=Msa0849700-mRNA-1
chr5_4 exon 37337023 37337153 37337023 ID=Msa0849700-mRNA-1:exon:12150;Parent=Msa0849700-mRNA-1
chr5_4 exon 37337238 37337331 37337238 ID=Msa0849700-mRNA-1:exon:12151;Parent=Msa0849700-mRNA-1
chr5_4 exon 37338084 37338980 37338084 ID=Msa0849700-mRNA-1:exon:12152;Parent=Msa0849700-mRNA-1
chr5_4 five_prime_UTR 37334352 37334539 37334352 ID=Msa0849700-mRNA-1:five_prime_utr;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37334540 37335570 37334540 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37335667 37335831 37335667 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37336015 37336180 37336015 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37336521 37336631 37336521 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37336723 37336916 37336723 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37337023 37337153 37337023 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37337238 37337331 37337238 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 CDS 37338084 37338393 37338084 ID=Msa0849700-mRNA-1:cds;Parent=Msa0849700-mRNA-1
chr5_4 three_prime_UTR 37338394 37338980 37338394 ID=Msa0849700-mRNA-1:three_prime_utr;Parent=Msa0849700-mRNA-1
Gene Sequence

>Msa0849700

ATGAGTGATACAGTGGTGAACGATGAAGTTGTTGAGGTTGTTAGTTCAACGAAGAGCAACATTCCTGAACCGGAGAAGGAAAACAAACCTTCTCCACCGGCGGTGATTGCTGGAAGAAGCCGTTCACAAGGAGGTGGTAGACGAGTGACACCGACGAGCTTCACGGTGGTTTCCGATGGTAGATCCGTTGTTGAGAGAGTACTTCCGAACGGAGATTTCTACGCCGGAAGTTTCTCCGGCAACGTACCGAATGGATCCGGGAAGTATCTATGGACCGACGGTTGCATGTACGAAGGTGAATGGAAACGTGGAAAAGCTTCGGGGAAAGGGAAGTTTTCATGGCCTTCAGGCGCGACTTACGAGGGAGAGTTCAAGTCGGGTCGAATGGAAGGATTCGGAACATTCGTTGGATCCGACGGTGATACATATCGCGGGTCGTGGAGCTCCGATAGAAAACACGGGTTCGGTCAGAAACGTTACGCGAACGGTGATTTATACGAAGGGTGGTGGAAGCGTAACGTTCAAGATGGTCAAGGACGTTACGTTTGGAAGAATGGGAATGAGTATGTTGGTGAATGGCGTAACGGCGTTATATCTGGGAAGGGTTCGTTAGTTTGGGTTAACGGAAACCGTTTGGAGGGTTTGTGGGAGAATGGTGTTCCGAAAGGACAAGGTGTTATGAAGATTCAACATGGTTTTGGTGGGTTTGTTTGGAATGACAATTTTGCCCCTGTGTTGATGAGGAAACGTTCTTCTGTTGATACTACTGTTAGTGGTAGAGGGAGTTTGAATGAGAAGAATTTTCCTAGGATTTGTATTTGGGAATCTGAAGGTGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTCGAGGCTTCGATGTTTTATCGCGATGGAACGTGTTCTGATCCTGATGAGTTTCGAAAACATCCTTGTTGTTTCTCTTCTGAGGTTAAGAGACCTGGTCAAACTATTTCTAAAGGGCATAAGAATTATGATTTGATGCTTAATTTGCAATTGGGGATTAGATACACGGTTGGGAAGGAAGCGTCGAAGTTACGAGAGCTTAAACCTAGTGATTTTGATCCTAAGGAGAAGTTCTGGACAAGGTTTCCGAGTGAAGGATCCAAGATTACCCCGCCTCATCAAACCGCGGAGTTTCGATGGAAAGATTACTGTCCGGTTGTTTTTAGACATTTGAGGAAGCTGTTTCAGGTTGATCCTGCTGATTATATGTTGGCTATATGTGGGGATGATGCTCTTAGAGAACTTTCCTCTCCCGGGAAAAGCGGAAGTGTTTTCTACTTGACCCAAGATGACAGATTCATGATTAAGACAGTGAAGAAATCTGAAGTCAAGGTGCTTCTTCGGATGCTTCGAAGCTATTACAAACACGTGTCCAAATATGAGAATTCACTGGTGACAAAATTCTTTGGGGTACATTGTGTGAAACCTATTGGAGGCCAAAAGATCCGGTTTATTGTGATGGGCAATCTTTTCTGCTCTGAATATCCAATTCATAGACGATTTGATTTGAAAGGATCTTCACATGGTCGTGCAACAGATAAACCTGAGGATGAGATTGATGAAACAACCACCCTCAAAGACCTTGATCTGAACTATGTGTTTCGTGTACAACGAAATTGGTACCAGGATCTTATTAAACAAATTGAGCGGGATTGTGAGTTCTTGGAAAACGAGAAAATTATGGACTACAGTCTTTTGGTTGGCCTTCATTTTCGTGATGACAACACTTATGACAAAATGGGGTTGTCACCTTTTCTTCTACGCACTGGCAATCAGGATTCTTATCATACTGAGAAGTTCATGCGTGGTTATCGCTTTCTCGAAGCAGAGTTGCAAGATAGGGATCGAGTTAAATCTGGAAGAAAATCATTAATCAGGCTAGGAGCCAATATGCCAGCAAGAGCAGAACGGTTGGCAAGGAGGAGTGATTTTGATCAATACACCAATGGTGGAATCAGCCATTTGAATCCTTATAGCAGCGGGGAGGCTTATGATTGCGTTCTATATTTTGGGGTTATCGATATTTTACAGGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAGTCTTTGCAAGTTGACTCTACTTCAATTTCTGCTGTTGATCCAAAGCTATACTCAAAAAGGTTTCGAGATTTTGTTGGAAGAATATTCATTGAAGATTGGTAA
Protein sequence

>Msa0849700

MSDTVVNDEVVEVVSSTKSNIPEPEKENKPSPPAVIAGRSRSQGGGRRVTPTSFTVVSDGRSVVERVLPNGDFYAGSFSGNVPNGSGKYLWTDGCMYEGEWKRGKASGKGKFSWPSGATYEGEFKSGRMEGFGTFVGSDGDTYRGSWSSDRKHGFGQKRYANGDLYEGWWKRNVQDGQGRYVWKNGNEYVGEWRNGVISGKGSLVWVNGNRLEGLWENGVPKGQGVMKIQHGFGGFVWNDNFAPVLMRKRSSVDTTVSGRGSLNEKNFPRICIWESEGEAGDITCDIVDNVEASMFYRDGTCSDPDEFRKHPCCFSSEVKRPGQTISKGHKNYDLMLNLQLGIRYTVGKEASKLRELKPSDFDPKEKFWTRFPSEGSKITPPHQTAEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSVFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYKHVSKYENSLVTKFFGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRATDKPEDEIDETTTLKDLDLNYVFRVQRNWYQDLIKQIERDCEFLENEKIMDYSLLVGLHFRDDNTYDKMGLSPFLLRTGNQDSYHTEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERLARRSDFDQYTNGGISHLNPYSSGEAYDCVLYFGVIDILQDYDISKKLEHAYKSLQVDSTSISAVDPKLYSKRFRDFVGRIFIEDW*