AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738110 MtrunA17_Chr5g0436341 98.693 306 4 0 1 306 1 306 0.0 610
Msa0738110 MtrunA17_Chr3g0112981 90.099 303 30 0 4 306 20 322 0.0 558
Msa0738110 MtrunA17_Chr4g0008071 72.368 304 84 0 1 304 5 308 5.22e-162 453
Msa0738110 MtrunA17_Chr8g0382081 73.490 298 77 2 8 304 11 307 1.12e-160 450
Msa0738110 MtrunA17_Chr4g0056661 67.119 295 97 0 12 306 56 350 7.33e-135 386
Msa0738110 MtrunA17_Chr3g0103641 83.019 159 27 0 148 306 3 161 6.17e-96 280
Msa0738110 MtrunA17_Chr3g0103631 75.316 158 39 0 4 161 5 162 4.33e-84 250
Msa0738110 MtrunA17_Chr3g0114581 33.010 309 199 2 1 303 1 307 1.14e-50 171
Msa0738110 MtrunA17_Chr1g0160071 33.677 291 191 1 13 303 18 306 6.51e-50 169
Msa0738110 MtrunA17_Chr2g0307091 32.770 296 189 4 11 302 16 305 7.61e-36 132
Msa0738110 MtrunA17_Chr3g0137921 30.201 298 194 5 11 302 20 309 4.62e-31 119
Msa0738110 MtrunA17_Chr7g0270591 31.488 289 186 5 22 305 28 309 9.32e-28 110
Msa0738110 MtrunA17_Chr4g0063601 30.233 301 162 8 11 302 16 277 8.85e-23 96.3
Msa0738110 MtrunA17_Chr4g0069261 30.104 289 190 5 22 305 24 305 1.67e-22 96.3
Msa0738110 MtrunA17_Chr2g0312911 24.830 294 203 5 22 306 24 308 3.97e-21 92.0
Msa0738110 MtrunA17_Chr4g0058971 26.441 295 201 7 16 303 92 377 1.12e-18 85.5
Msa0738110 MtrunA17_Chr8g0341861 24.422 303 213 7 9 299 169 467 1.31e-15 77.0
Msa0738110 MtrunA17_Chr3g0117501 28.384 229 161 3 81 306 178 406 1.83e-14 73.2
Msa0738110 MtrunA17_Chr4g0046561 28.013 307 192 13 16 306 106 399 2.82e-14 72.8
Msa0738110 MtrunA17_Chr6g0449891 27.575 301 201 5 12 303 116 408 3.73e-14 72.4
Msa0738110 MtrunA17_Chr5g0419001 27.723 303 193 12 16 304 111 401 6.51e-14 71.6
Msa0738110 MtrunA17_Chr3g0097931 22.549 306 225 7 3 303 103 401 3.53e-13 69.3
Msa0738110 MtrunA17_Chr2g0288011 22.403 308 227 7 2 304 96 396 1.23e-12 67.8
Msa0738110 MtrunA17_Chr2g0298931 26.909 275 171 9 21 283 67 323 1.75e-12 67.4
Msa0738110 MtrunA17_Chr2g0326791 25.392 319 210 8 1 305 1 305 5.96e-12 65.5
Msa0738110 MtrunA17_Chr6g0467391 25.084 299 200 6 18 305 20 305 1.28e-11 64.3
Msa0738110 MtrunA17_Chr6g0467371 25.084 299 200 6 18 305 20 305 1.28e-11 64.3
Msa0738110 MtrunA17_Chr4g0074541 22.449 294 217 6 14 303 106 392 2.32e-11 63.9
Msa0738110 MtrunA17_Chr4g0028931 25.633 316 211 8 1 304 1 304 6.43e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738110 AT3G11320.1 87.129 303 39 0 4 306 6 308 0.0 544
Msa0738110 AT5G05820.1 85.294 306 45 0 1 306 3 308 0.0 540
Msa0738110 AT5G04160.1 71.661 307 84 1 1 304 1 307 1.94e-160 449
Msa0738110 AT3G10290.1 72.054 297 83 0 8 304 57 353 5.79e-159 447
Msa0738110 AT1G12500.1 65.677 303 104 0 4 306 54 356 3.74e-139 397
Msa0738110 AT1G21870.1 35.836 293 182 4 13 303 19 307 7.38e-52 174
Msa0738110 AT1G77610.1 34.868 304 194 3 1 303 1 301 1.12e-51 173
Msa0738110 AT5G11230.1 31.773 299 190 5 13 305 22 312 2.58e-33 125
Msa0738110 AT5G25400.1 31.544 298 190 5 11 302 20 309 2.42e-32 123
Msa0738110 AT4G32390.1 31.544 298 190 5 11 302 20 309 1.98e-31 120
Msa0738110 AT2G25520.1 31.879 298 189 5 11 302 20 309 1.21e-30 118
Msa0738110 AT3G17430.2 30.796 289 188 5 22 305 25 306 1.49e-26 107
Msa0738110 AT3G17430.1 30.796 289 188 5 22 305 25 306 1.49e-26 107
Msa0738110 AT1G53660.1 26.042 288 202 5 22 305 30 310 9.27e-25 102
Msa0738110 AT1G53660.3 27.241 290 196 7 22 305 48 328 1.57e-24 102
Msa0738110 AT1G53660.4 25.735 272 193 4 36 305 12 276 2.80e-23 97.4
Msa0738110 AT1G48230.1 31.399 293 181 6 22 305 25 306 1.76e-22 96.7
Msa0738110 AT3G14410.1 26.480 321 212 6 1 306 1 312 2.28e-22 95.9
Msa0738110 AT1G53660.5 26.009 223 157 3 84 305 1 216 8.03e-19 84.0
Msa0738110 AT1G48230.2 30.638 235 145 5 78 305 10 233 5.92e-15 74.3
Msa0738110 AT5G17630.1 25.168 298 207 9 16 306 119 407 9.87e-15 74.7
Msa0738110 AT5G57100.1 25.260 289 203 7 21 306 76 354 2.23e-14 73.6
Msa0738110 AT3G01550.1 26.962 293 204 5 16 303 86 373 2.59e-14 73.2
Msa0738110 AT5G54800.1 23.607 305 221 7 3 302 90 387 4.77e-14 72.4
Msa0738110 AT1G06470.4 23.453 307 211 8 9 299 75 373 2.96e-13 70.1
Msa0738110 AT1G06470.2 23.453 307 211 8 9 299 75 373 2.96e-13 70.1
Msa0738110 AT1G06470.1 23.453 307 211 8 9 299 75 373 2.96e-13 70.1
Msa0738110 AT1G06470.3 23.453 307 211 8 9 299 75 373 2.96e-13 70.1
Msa0738110 AT1G53660.2 28.333 180 122 4 22 196 48 225 3.41e-13 68.6
Msa0738110 AT5G33320.1 27.759 299 198 8 12 302 111 399 1.48e-12 68.2
Msa0738110 AT1G61800.1 21.498 307 229 7 2 303 89 388 2.21e-12 67.4
Msa0738110 AT5G46110.2 26.797 306 197 11 16 306 2 295 3.80e-12 66.2
Msa0738110 AT5G46110.1 26.230 305 200 9 16 306 115 408 6.61e-12 66.2
Msa0738110 AT1G61800.2 21.036 309 232 7 2 305 89 390 6.93e-12 65.9
Msa0738110 AT5G46110.4 26.490 302 198 9 16 304 115 405 8.50e-12 65.9
Msa0738110 AT3G01550.2 27.211 294 197 8 16 303 86 368 2.49e-11 64.3
Msa0738110 AT2G28315.1 23.920 301 211 6 6 299 5 294 2.79e-11 63.9
Msa0738110 AT2G28315.2 23.920 301 211 6 6 299 5 294 5.30e-11 62.8
Msa0738110 AT5G55950.4 26.408 284 192 7 21 299 9 280 6.54e-11 62.8
Msa0738110 AT5G57100.2 27.083 192 133 5 21 210 76 262 8.43e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGATTCTTTCATGGTTT+TGG 0.095645 5_1:-55809360 None:intergenic
GCTCTTGTTCCTGTTGTTAC+TGG 0.193329 5_1:+55809767 Msa0738110:CDS
TTGGTACCATGAGCTATTTC+TGG 0.216098 5_1:-55812878 None:intergenic
CTGGACAGTTGCTAATATAA+TGG 0.233512 5_1:-55812859 None:intergenic
GAACCAAGCTTCCATTTGTT+TGG 0.241327 5_1:+55811448 Msa0738110:CDS
ATCATTCCAGTGACTGAAAC+TGG 0.253281 5_1:-55812621 None:intergenic
TGACGAAAGAGTTGTATAAT+TGG 0.260273 5_1:+55812975 Msa0738110:three_prime_UTR
TGACACATGGTGAGGAAAAT+TGG 0.261872 5_1:-55809482 None:intergenic
TGCAATCGCTTGGTTCAAAA+TGG 0.276655 5_1:+55809535 Msa0738110:CDS
GGCTTTGCTTGATTCTTTCA+TGG 0.277463 5_1:-55809366 None:intergenic
TCAATAAGGCTTTCTATGTT+GGG 0.304144 5_1:-55812828 None:intergenic
AACCAAGCTTCCATTTGTTT+GGG 0.304562 5_1:+55811449 Msa0738110:CDS
TCTTCCTGCTACACTCTATA+TGG 0.309783 5_1:+55811706 Msa0738110:CDS
AGAGGAATGGGTTTGTTAGA+AGG 0.322214 5_1:-55809306 None:intergenic
ACTCTATATAAGAATTCTTT+TGG 0.325384 5_1:+55812804 Msa0738110:three_prime_UTR
TTGAAAGGAGATACTTGTTT+AGG 0.330177 5_1:-55809442 None:intergenic
TAATGGGAACCCTTTCAATA+AGG 0.331994 5_1:-55812842 None:intergenic
TTCAATAAGGCTTTCTATGT+TGG 0.335623 5_1:-55812829 None:intergenic
TACAGAGATCATTCACTTAC+TGG 0.336378 5_1:-55812904 None:intergenic
TGGACAGTTGCTAATATAAT+GGG 0.358432 5_1:-55812858 None:intergenic
GATTGCAACGTAGCTGAATA+AGG 0.384927 5_1:-55809519 None:intergenic
AGACAAAATTGTTCAGAATC+AGG 0.390592 5_1:+55812772 Msa0738110:three_prime_UTR
TACCAGTGCTCTCACCCTTC+AGG 0.394449 5_1:+55811853 Msa0738110:CDS
AAGAAGAAAGTGCAAGGAAA+TGG 0.405412 5_1:+55809158 Msa0738110:five_prime_UTR
GAGATGATGTGAAGATCATT+TGG 0.421654 5_1:+55811765 Msa0738110:CDS
ACGGGAACGCGTATACAAAC+GGG 0.425340 5_1:-55809201 None:intergenic
AGTTTGTTCATATAGGTACT+AGG 0.434717 5_1:+55812546 Msa0738110:intron
AGTTTCAGTCACTGGAATGA+TGG 0.435874 5_1:+55812623 Msa0738110:CDS
AACGGGAACGCGTATACAAA+CGG 0.445234 5_1:-55809202 None:intergenic
ATGAGTGAAGGAAAGGTAAA+CGG 0.447059 5_1:-55809220 None:intergenic
AGGTACTAGGGAATGCTAAA+GGG 0.448616 5_1:+55812559 Msa0738110:intron
GGTTATTCACTCACAGTCCT+TGG 0.450720 5_1:+55812645 Msa0738110:CDS
CATAGAAAGCCTTATTGAAA+GGG 0.456071 5_1:+55812833 Msa0738110:three_prime_UTR
AGAAACCCAGTTTCAGTCAC+TGG 0.462050 5_1:+55812615 Msa0738110:CDS
TGTTCAGAATCAGGATGTTA+CGG 0.465758 5_1:+55812781 Msa0738110:three_prime_UTR
TTGGAGCCATGTAAAGTAGA+AGG 0.468805 5_1:-55811667 None:intergenic
ATCATTCACTTACTGGAACT+TGG 0.472047 5_1:-55812897 None:intergenic
TATGAACCTTCTACTTTACA+TGG 0.472403 5_1:+55811661 Msa0738110:CDS
ATGGATCTGTGAAGAGGAAT+GGG 0.479710 5_1:-55809318 None:intergenic
ATATTATGAACCCAAACAAA+TGG 0.482955 5_1:-55811459 None:intergenic
TCTTCCATATAGAGTGTAGC+AGG 0.486739 5_1:-55811710 None:intergenic
TATATGGAAGAAAATGTGAT+TGG 0.486839 5_1:+55811722 Msa0738110:CDS
TAGGTACTAGGGAATGCTAA+AGG 0.489877 5_1:+55812558 Msa0738110:intron
AATGATCTTCACATCATCTC+TGG 0.491323 5_1:-55811762 None:intergenic
AACCCAAACAAATGGAAGCT+TGG 0.492671 5_1:-55811451 None:intergenic
CTGGTGTTGTCATTGCTAGT+GGG 0.500231 5_1:+55809786 Msa0738110:CDS
TCAGCTACGTTGCAATCGCT+TGG 0.501471 5_1:+55809525 Msa0738110:CDS
ACATAGAAAGCCTTATTGAA+AGG 0.510034 5_1:+55812832 Msa0738110:three_prime_UTR
CATTCCTCAGTATGCCAACA+TGG 0.511027 5_1:-55812933 None:intergenic
AAGTATCTCCTTTCAAACTA+CGG 0.511440 5_1:+55809449 Msa0738110:CDS
ATGACAACACCAGTAACAAC+AGG 0.514159 5_1:-55809776 None:intergenic
TATAGAGTGTAGCAGGAAGA+AGG 0.515468 5_1:-55811703 None:intergenic
GACACATGGTGAGGAAAATT+GGG 0.517372 5_1:-55809481 None:intergenic
AGAAGGAAAACAACAGCCAT+TGG 0.520144 5_1:-55811686 None:intergenic
TCTACTTTACATGGCTCCAA+TGG 0.521350 5_1:+55811670 Msa0738110:CDS
CAATAAGGCTTTCTATGTTG+GGG 0.521695 5_1:-55812827 None:intergenic
TACCTGAAGGGTGAGAGCAC+TGG 0.521847 5_1:-55811855 None:intergenic
GTTTCAGTCACTGGAATGAT+GGG 0.522262 5_1:+55812624 Msa0738110:CDS
ATTTGAAACCGTAGTTTGAA+AGG 0.524913 5_1:-55809457 None:intergenic
GGAGATACTTGTTTAGGAGT+AGG 0.527615 5_1:-55809436 None:intergenic
CGAGAACGCATGAATTGCAT+TGG 0.534806 5_1:-55809560 None:intergenic
GTTTGTTCATATAGGTACTA+GGG 0.538022 5_1:+55812547 Msa0738110:intron
TGAGTGAAGGAAAGGTAAAC+GGG 0.540228 5_1:-55809219 None:intergenic
ACTGGTGTTGTCATTGCTAG+TGG 0.546107 5_1:+55809785 Msa0738110:CDS
GTGTCGTTTAATCAAGCTAT+CGG 0.549847 5_1:+55809668 Msa0738110:CDS
CATGGATCTGTGAAGAGGAA+TGG 0.550027 5_1:-55809319 None:intergenic
TGACGTTGAAGAGAGAAGCT+TGG 0.560897 5_1:+55809732 Msa0738110:CDS
TAGGAGTAGGACTCCTATGT+TGG 0.563888 5_1:-55809423 None:intergenic
TCATTCCAGTGACTGAAACT+GGG 0.574484 5_1:-55812620 None:intergenic
TTGTTCATGGATCTGTGAAG+AGG 0.582601 5_1:-55809324 None:intergenic
CAAGTGCGGAATTGAACAGC+AGG 0.586756 5_1:-55811790 None:intergenic
AAAAGGGAGGCATACCTGAA+GGG 0.598277 5_1:-55811867 None:intergenic
AACTGTCCAGAAATAGCTCA+TGG 0.603467 5_1:+55812872 Msa0738110:three_prime_UTR
GGTACTAGGGAATGCTAAAG+GGG 0.604155 5_1:+55812560 Msa0738110:intron
GCATGGTACTCATCCAACAT+AGG 0.604171 5_1:+55809410 Msa0738110:CDS
TGAGATTAATGTTATTGTGA+AGG 0.605559 5_1:-55809387 None:intergenic
TCTCTGTAGTATACCCATGT+TGG 0.609260 5_1:+55812919 Msa0738110:three_prime_UTR
GTATTGTATGAGTGAAGGAA+AGG 0.609819 5_1:-55809227 None:intergenic
CACTATAAAGTACAACTCCA+AGG 0.624587 5_1:-55812662 None:intergenic
TATTGGTATTGTATGAGTGA+AGG 0.631202 5_1:-55809232 None:intergenic
ATTGACAAAATATGCAAGTG+CGG 0.636129 5_1:-55811804 None:intergenic
TGGTGTTGTCATTGCTAGTG+GGG 0.643361 5_1:+55809787 Msa0738110:CDS
AATATGTGTTGCAGCTACAG+CGG 0.656983 5_1:+55811477 Msa0738110:CDS
ATTCCTCAGTATGCCAACAT+GGG 0.659167 5_1:-55812932 None:intergenic
CAATAACATTAATCTCAGCA+TGG 0.659834 5_1:+55809393 Msa0738110:CDS
ATACCCATGTTGGCATACTG+AGG 0.677351 5_1:+55812929 Msa0738110:three_prime_UTR
AAATGTGATTGGCATCACGT+TGG 0.681454 5_1:+55811733 Msa0738110:CDS
ATAGCTTGATTAAACGACAC+AGG 0.688704 5_1:-55809665 None:intergenic
CGGGAACGCGTATACAAACG+GGG 0.713866 5_1:-55809200 None:intergenic
ACATGCTGTCATGTGACACA+TGG 0.739726 5_1:-55809495 None:intergenic
CTGTCATGTGACACATGGTG+AGG 0.745537 5_1:-55809490 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAATTTTTTATTGTT+GGG + chr5_1:55810018-55810037 Msa0738110:intron 10.0%
!!! AAATTTGAAATAAATAAGTT+TGG - chr5_1:55810122-55810141 None:intergenic 10.0%
!!! TTTTTTACTTATATTTAAGA+TGG + chr5_1:55810159-55810178 Msa0738110:intron 10.0%
!! TTATCAAGTTATATAATAAA+TGG + chr5_1:55811597-55811616 Msa0738110:intron 10.0%
!! TATCAAGTTATATAATAAAT+GGG + chr5_1:55811598-55811617 Msa0738110:intron 10.0%
!!! AAAATGTAAATATTTGTTTT+TGG + chr5_1:55812400-55812419 Msa0738110:intron 10.0%
!!! AAATGTAAATATTTGTTTTT+GGG + chr5_1:55812401-55812420 Msa0738110:intron 10.0%
!!! AAAGTTTATAAATTGCATTT+TGG + chr5_1:55809969-55809988 Msa0738110:intron 15.0%
!!! AAGTTTATAAATTGCATTTT+GGG + chr5_1:55809970-55809989 Msa0738110:intron 15.0%
!!! CTTTTGTAATTTTTTATTGT+TGG + chr5_1:55810017-55810036 Msa0738110:intron 15.0%
!!! AATATAATTTTCTTAAGCAA+GGG - chr5_1:55810049-55810068 None:intergenic 15.0%
!!! TAATATAATTTTCTTAAGCA+AGG - chr5_1:55810050-55810069 None:intergenic 15.0%
!!! AAAATAAGAAGTATAAAAGT+TGG + chr5_1:55810349-55810368 Msa0738110:intron 15.0%
!!! GATTTTTTTTAATTGAGAAA+TGG - chr5_1:55810608-55810627 None:intergenic 15.0%
!! TTTCTCAATTAAAAAAAATC+TGG + chr5_1:55810608-55810627 Msa0738110:intron 15.0%
!! AATCAAATTAAGCAAAATTA+TGG + chr5_1:55810951-55810970 Msa0738110:intron 15.0%
!! TATGAAAATAAGAATCTTTA+TGG + chr5_1:55811381-55811400 Msa0738110:intron 15.0%
!!! ATTTTTTTATTGTGGTATAT+AGG + chr5_1:55813055-55813074 Msa0738110:three_prime_UTR 15.0%
!!! AGTTTATAAATTGCATTTTG+GGG + chr5_1:55809971-55809990 Msa0738110:intron 20.0%
!!! TTTTGCTTACATTTTTTTAG+AGG - chr5_1:55810097-55810116 None:intergenic 20.0%
!! ATTAATCACAACAAATGAAA+TGG + chr5_1:55810227-55810246 Msa0738110:intron 20.0%
!! AATTTAGTGTGATTATATGT+TGG + chr5_1:55810462-55810481 Msa0738110:intron 20.0%
!!! GATCATGTTATTTATGTTTT+CGG + chr5_1:55810707-55810726 Msa0738110:intron 20.0%
!!! ATCATGTTATTTATGTTTTC+GGG + chr5_1:55810708-55810727 Msa0738110:intron 20.0%
!! AAATTACCAATAGTTAGAAT+CGG - chr5_1:55811029-55811048 None:intergenic 20.0%
!! AATGATCAAATCTTTATCAT+AGG + chr5_1:55811273-55811292 Msa0738110:intron 20.0%
!!! AGATTCTTATTTTCATAGTT+TGG - chr5_1:55811378-55811397 None:intergenic 20.0%
!!! AAGAAACTTGTTTATAACAA+TGG - chr5_1:55811988-55812007 None:intergenic 20.0%
!!! ACAATTGTTTTAAACTTTGT+AGG + chr5_1:55812354-55812373 Msa0738110:intron 20.0%
!!! CAATTGTTTTAAACTTTGTA+GGG + chr5_1:55812355-55812374 Msa0738110:intron 20.0%
!!! ACTCTATATAAGAATTCTTT+TGG + chr5_1:55812804-55812823 Msa0738110:three_prime_UTR 20.0%
!!! AAGTTCGTATTTTTTTATTG+TGG + chr5_1:55813047-55813066 Msa0738110:three_prime_UTR 20.0%
!!! AAAAACGGTGTTATTGTTAT+TGG - chr5_1:55809252-55809271 None:intergenic 25.0%
! AAGCGTATAAAAGACAAAAA+CGG - chr5_1:55809267-55809286 None:intergenic 25.0%
! TGAGATTAATGTTATTGTGA+AGG - chr5_1:55809390-55809409 None:intergenic 25.0%
!!! TTTTTGGTAATGTTTCGTTA+CGG + chr5_1:55809636-55809655 Msa0738110:CDS 25.0%
! GTTATTCAATTTGTACGATT+TGG + chr5_1:55809898-55809917 Msa0738110:intron 25.0%
!!! AGTATATTCTAGAACAGTTT+TGG + chr5_1:55810187-55810206 Msa0738110:intron 25.0%
!!! TTTTTTTTTGTCTTGATCCT+AGG + chr5_1:55810256-55810275 Msa0738110:intron 25.0%
!!! TTTTTTTTGTCTTGATCCTA+GGG + chr5_1:55810257-55810276 Msa0738110:intron 25.0%
!!! CAATTGTTTCTGAATTACAA+GGG - chr5_1:55810285-55810304 None:intergenic 25.0%
!!! ACAATTGTTTCTGAATTACA+AGG - chr5_1:55810286-55810305 None:intergenic 25.0%
! TGATGTTCTCAAATTATTAG+CGG - chr5_1:55810439-55810458 None:intergenic 25.0%
!!! TATTTATGTTTTCGGGATTT+TGG + chr5_1:55810715-55810734 Msa0738110:intron 25.0%
!!! TTGGACTTTGTTTTTAAAAC+TGG + chr5_1:55810896-55810915 Msa0738110:intron 25.0%
!!! TGGACTTTGTTTTTAAAACT+GGG + chr5_1:55810897-55810916 Msa0738110:intron 25.0%
!! TACTAATGACTTTTGATAAG+TGG - chr5_1:55810983-55811002 None:intergenic 25.0%
!!! TCAATTGTTTTTATGAGCAA+TGG + chr5_1:55811069-55811088 Msa0738110:intron 25.0%
! ACTTAAATCAGATATTTCAC+TGG - chr5_1:55811158-55811177 None:intergenic 25.0%
!! ATCTGATTTAAGTTTGTCTT+AGG + chr5_1:55811165-55811184 Msa0738110:intron 25.0%
! ATATTATGAACCCAAACAAA+TGG - chr5_1:55811462-55811481 None:intergenic 25.0%
! CAGAAGAAAACAAATTAATG+AGG - chr5_1:55811577-55811596 None:intergenic 25.0%
! TATATGGAAGAAAATGTGAT+TGG + chr5_1:55811722-55811741 Msa0738110:CDS 25.0%
!! ATGTTTTGTGACCAAAAAAT+TGG - chr5_1:55811834-55811853 None:intergenic 25.0%
! GTTGTATGACTATATGAAAA+GGG - chr5_1:55811886-55811905 None:intergenic 25.0%
! AGTTGTATGACTATATGAAA+AGG - chr5_1:55811887-55811906 None:intergenic 25.0%
! TATAACAATGGAAAAAAGCT+AGG - chr5_1:55811976-55811995 None:intergenic 25.0%
! CATAATTATTTCAAACCTCT+TGG + chr5_1:55812044-55812063 Msa0738110:intron 25.0%
!!! AATGCTGCTTATATTTTCAT+TGG + chr5_1:55812082-55812101 Msa0738110:intron 25.0%
! TTCAGATCATTAGATTTCTT+TGG + chr5_1:55812279-55812298 Msa0738110:intron 25.0%
! AAAAAGAAGAAGAAAGTGCA+AGG + chr5_1:55809152-55809171 Msa0738110:five_prime_UTR 30.0%
TATTGGTATTGTATGAGTGA+AGG - chr5_1:55809235-55809254 None:intergenic 30.0%
!! TTGATTCTTTCATGGTTTTG+GGG - chr5_1:55809361-55809380 None:intergenic 30.0%
! CTTGATTCTTTCATGGTTTT+GGG - chr5_1:55809362-55809381 None:intergenic 30.0%
CAATAACATTAATCTCAGCA+TGG + chr5_1:55809393-55809412 Msa0738110:CDS 30.0%
TTGAAAGGAGATACTTGTTT+AGG - chr5_1:55809445-55809464 None:intergenic 30.0%
AAGTATCTCCTTTCAAACTA+CGG + chr5_1:55809449-55809468 Msa0738110:CDS 30.0%
! ATTTGAAACCGTAGTTTGAA+AGG - chr5_1:55809460-55809479 None:intergenic 30.0%
CGAAACATTACCAAAAACAA+CGG - chr5_1:55809633-55809652 None:intergenic 30.0%
!!! ATAAATTGCATTTTGGGGTA+TGG + chr5_1:55809976-55809995 Msa0738110:intron 30.0%
!!! TAAATTGCATTTTGGGGTAT+GGG + chr5_1:55809977-55809996 Msa0738110:intron 30.0%
!!! TTCTTATTTTTCTCTCTCCT+CGG - chr5_1:55810339-55810358 None:intergenic 30.0%
CTTCATAGTCTACATGTATA+CGG + chr5_1:55810556-55810575 Msa0738110:intron 30.0%
GAGAGTTCATTAACAACTTA+AGG + chr5_1:55810682-55810701 Msa0738110:intron 30.0%
!! TAAAGTGTTTCCCTTTTAAC+AGG - chr5_1:55810932-55810951 None:intergenic 30.0%
ACAATTGAACTAGATCTGTA+TGG - chr5_1:55811057-55811076 None:intergenic 30.0%
AGAGATTCTTATGTACACAA+TGG - chr5_1:55811125-55811144 None:intergenic 30.0%
TTCACTTTGCAGTTACTAAT+AGG + chr5_1:55811243-55811262 Msa0738110:intron 30.0%
CTTGATATGTTCATATTGTG+TGG + chr5_1:55811298-55811317 Msa0738110:intron 30.0%
!!! CTTATTTGGTGTTTTGATGA+TGG + chr5_1:55811341-55811360 Msa0738110:intron 30.0%
! TCTTTTCTTTCTTTGCTTAC+AGG + chr5_1:55811423-55811442 Msa0738110:intron 30.0%
! CTTTTCTTTCTTTGCTTACA+GGG + chr5_1:55811424-55811443 Msa0738110:intron 30.0%
! GAATTTTGCTTTCATCTGAA+GGG + chr5_1:55811527-55811546 Msa0738110:CDS 30.0%
TATGAACCTTCTACTTTACA+TGG + chr5_1:55811661-55811680 Msa0738110:CDS 30.0%
ATTGACAAAATATGCAAGTG+CGG - chr5_1:55811807-55811826 None:intergenic 30.0%
!!! TGTCAATCTGACCAATTTTT+TGG + chr5_1:55811820-55811839 Msa0738110:CDS 30.0%
! AAATTGACATCCTTAGTTCT+AGG - chr5_1:55812169-55812188 None:intergenic 30.0%
!! AACTTTTCCTGATCTAGAAT+AGG - chr5_1:55812445-55812464 None:intergenic 30.0%
! ATCCAAGAGTTTGTTCATAT+AGG + chr5_1:55812539-55812558 Msa0738110:intron 30.0%
TACCTATATGAACAAACTCT+TGG - chr5_1:55812544-55812563 None:intergenic 30.0%
! AGTTTGTTCATATAGGTACT+AGG + chr5_1:55812546-55812565 Msa0738110:intron 30.0%
GTTTGTTCATATAGGTACTA+GGG + chr5_1:55812547-55812566 Msa0738110:intron 30.0%
AGACAAAATTGTTCAGAATC+AGG + chr5_1:55812772-55812791 Msa0738110:three_prime_UTR 30.0%
TCAATAAGGCTTTCTATGTT+GGG - chr5_1:55812831-55812850 None:intergenic 30.0%
TTCAATAAGGCTTTCTATGT+TGG - chr5_1:55812832-55812851 None:intergenic 30.0%
!! ACATAGAAAGCCTTATTGAA+AGG + chr5_1:55812832-55812851 Msa0738110:three_prime_UTR 30.0%
!! CATAGAAAGCCTTATTGAAA+GGG + chr5_1:55812833-55812852 Msa0738110:three_prime_UTR 30.0%
TGGACAGTTGCTAATATAAT+GGG - chr5_1:55812861-55812880 None:intergenic 30.0%
TGACGAAAGAGTTGTATAAT+TGG + chr5_1:55812975-55812994 Msa0738110:three_prime_UTR 30.0%
!! ATATAGGCAGTGTAGTTTTA+TGG + chr5_1:55813071-55813090 Msa0738110:three_prime_UTR 30.0%
!!! CAGCGTTTTTTAAGTGTTGA+AGG - chr5_1:55809113-55809132 None:intergenic 35.0%
! AAGAAGAAAGTGCAAGGAAA+TGG + chr5_1:55809158-55809177 Msa0738110:five_prime_UTR 35.0%
ATGAGTGAAGGAAAGGTAAA+CGG - chr5_1:55809223-55809242 None:intergenic 35.0%
GTATTGTATGAGTGAAGGAA+AGG - chr5_1:55809230-55809249 None:intergenic 35.0%
!!! TTCATGGTTTTGGGGATTAT+GGG - chr5_1:55809353-55809372 None:intergenic 35.0%
!!! TTTCATGGTTTTGGGGATTA+TGG - chr5_1:55809354-55809373 None:intergenic 35.0%
! GCTTGATTCTTTCATGGTTT+TGG - chr5_1:55809363-55809382 None:intergenic 35.0%
!! TTCTGTGTTTCCGTTGTTTT+TGG + chr5_1:55809620-55809639 Msa0738110:CDS 35.0%
ATAGCTTGATTAAACGACAC+AGG - chr5_1:55809668-55809687 None:intergenic 35.0%
!! GTGTCGTTTAATCAAGCTAT+CGG + chr5_1:55809668-55809687 Msa0738110:CDS 35.0%
GCAAAAACCGCAGTAAAAAA+CGG - chr5_1:55809704-55809723 None:intergenic 35.0%
CGTGTTTGATTGAAATGTGT+CGG + chr5_1:55809924-55809943 Msa0738110:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr5_1:55810433-55810452 None:intergenic 35.0%
TATGAAGCACAGACATTTCT+CGG - chr5_1:55810543-55810562 None:intergenic 35.0%
TTCCAGTATGTAACTGAACT+TGG + chr5_1:55810641-55810660 Msa0738110:intron 35.0%
TCCAGTATGTAACTGAACTT+GGG + chr5_1:55810642-55810661 Msa0738110:intron 35.0%
! TTTTTGTACCTCTGCAACTA+AGG - chr5_1:55810849-55810868 None:intergenic 35.0%
! ATGACTTTTGATAAGTGGCA+AGG - chr5_1:55810978-55810997 None:intergenic 35.0%
!! TGTTTTTATGAGCAATGGAG+TGG + chr5_1:55811074-55811093 Msa0738110:intron 35.0%
AGCGGACATCATATAAATCA+AGG - chr5_1:55811202-55811221 None:intergenic 35.0%
!! GAAAAGCGTTTCATTTCACA+TGG - chr5_1:55811226-55811245 None:intergenic 35.0%
!!! CTGTTTTTGGTGGACTTATT+TGG + chr5_1:55811327-55811346 Msa0738110:intron 35.0%
AACCAAGCTTCCATTTGTTT+GGG + chr5_1:55811449-55811468 Msa0738110:CDS 35.0%
!! GCTCTAAAAACAGTGTTACA+AGG + chr5_1:55811505-55811524 Msa0738110:CDS 35.0%
! GGAATTTTGCTTTCATCTGA+AGG + chr5_1:55811526-55811545 Msa0738110:CDS 35.0%
AATGATCTTCACATCATCTC+TGG - chr5_1:55811765-55811784 None:intergenic 35.0%
GAGATGATGTGAAGATCATT+TGG + chr5_1:55811765-55811784 Msa0738110:CDS 35.0%
GTATGACTATATGAAAAGGG+AGG - chr5_1:55811883-55811902 None:intergenic 35.0%
ACAATGGAAAAAAGCTAGGT+TGG - chr5_1:55811972-55811991 None:intergenic 35.0%
TTTCAAACCTCTTGGAAAAG+AGG + chr5_1:55812052-55812071 Msa0738110:intron 35.0%
ATCACAAGAACCTAGAACTA+AGG + chr5_1:55812156-55812175 Msa0738110:intron 35.0%
! TCTTTGTTCCATGTCATTTC+AGG + chr5_1:55812247-55812266 Msa0738110:intron 35.0%
CAGTAAAACCTGAAATGACA+TGG - chr5_1:55812258-55812277 None:intergenic 35.0%
ACAAAAAAAATTGCAGCAGC+CGG - chr5_1:55812312-55812331 None:intergenic 35.0%
TCATACACCTATTCTAGATC+AGG + chr5_1:55812435-55812454 Msa0738110:intron 35.0%
CACTATAAAGTACAACTCCA+AGG - chr5_1:55812665-55812684 None:intergenic 35.0%
! GAATCACTTGCTTCTCTTTT+TGG - chr5_1:55812691-55812710 None:intergenic 35.0%
TGTTCAGAATCAGGATGTTA+CGG + chr5_1:55812781-55812800 Msa0738110:three_prime_UTR 35.0%
CAATAAGGCTTTCTATGTTG+GGG - chr5_1:55812830-55812849 None:intergenic 35.0%
TAATGGGAACCCTTTCAATA+AGG - chr5_1:55812845-55812864 None:intergenic 35.0%
CTGGACAGTTGCTAATATAA+TGG - chr5_1:55812862-55812881 None:intergenic 35.0%
ATCATTCACTTACTGGAACT+TGG - chr5_1:55812900-55812919 None:intergenic 35.0%
TACAGAGATCATTCACTTAC+TGG - chr5_1:55812907-55812926 None:intergenic 35.0%
!!! GCAGTGTAGTTTTATGGTTT+GGG + chr5_1:55813077-55813096 Msa0738110:three_prime_UTR 35.0%
!!! CAGTGTAGTTTTATGGTTTG+GGG + chr5_1:55813078-55813097 Msa0738110:three_prime_UTR 35.0%
TGAGTGAAGGAAAGGTAAAC+GGG - chr5_1:55809222-55809241 None:intergenic 40.0%
!! AGAGGAATGGGTTTGTTAGA+AGG - chr5_1:55809309-55809328 None:intergenic 40.0%
ATGGATCTGTGAAGAGGAAT+GGG - chr5_1:55809321-55809340 None:intergenic 40.0%
TTGTTCATGGATCTGTGAAG+AGG - chr5_1:55809327-55809346 None:intergenic 40.0%
!!! GGATTATGGGGTTTTGTTCA+TGG - chr5_1:55809340-55809359 None:intergenic 40.0%
!!! TCATGGTTTTGGGGATTATG+GGG - chr5_1:55809352-55809371 None:intergenic 40.0%
GGCTTTGCTTGATTCTTTCA+TGG - chr5_1:55809369-55809388 None:intergenic 40.0%
GGAGATACTTGTTTAGGAGT+AGG - chr5_1:55809439-55809458 None:intergenic 40.0%
GACACATGGTGAGGAAAATT+GGG - chr5_1:55809484-55809503 None:intergenic 40.0%
TGACACATGGTGAGGAAAAT+TGG - chr5_1:55809485-55809504 None:intergenic 40.0%
GATTGCAACGTAGCTGAATA+AGG - chr5_1:55809522-55809541 None:intergenic 40.0%
TGCAATCGCTTGGTTCAAAA+TGG + chr5_1:55809535-55809554 Msa0738110:CDS 40.0%
!!! TACTACGCCGTTTTTTACTG+CGG + chr5_1:55809694-55809713 Msa0738110:CDS 40.0%
ATGACAACACCAGTAACAAC+AGG - chr5_1:55809779-55809798 None:intergenic 40.0%
TGTCGGTGATCACATATTGT+CGG + chr5_1:55809941-55809960 Msa0738110:intron 40.0%
! TGGGGTATGGGAAATGTTTT+TGG + chr5_1:55809989-55810008 Msa0738110:intron 40.0%
TCTAAGCACAGATACAGACA+CGG + chr5_1:55810378-55810397 Msa0738110:intron 40.0%
CCAGTATGTAACTGAACTTG+GGG + chr5_1:55810643-55810662 Msa0738110:intron 40.0%
!! TCGGGATTTTGGTATTCAGA+AGG + chr5_1:55810726-55810745 Msa0738110:intron 40.0%
GGTATTCAGAAGGTAGATCA+AGG + chr5_1:55810736-55810755 Msa0738110:intron 40.0%
ACCTCTGCAACTAAGGTTAA+GGG - chr5_1:55810842-55810861 None:intergenic 40.0%
TACCTCTGCAACTAAGGTTA+AGG - chr5_1:55810843-55810862 None:intergenic 40.0%
AAAGTCCAAGACCGCAATTT+GGG - chr5_1:55810885-55810904 None:intergenic 40.0%
GAGCTAGACTCCTGTTAAAA+GGG + chr5_1:55810919-55810938 Msa0738110:intron 40.0%
!! CTTGTGCCGATTCTAACTAT+TGG + chr5_1:55811020-55811039 Msa0738110:intron 40.0%
! TGTGTGGTGTTCTCTGTTTT+TGG + chr5_1:55811314-55811333 Msa0738110:intron 40.0%
GAACCAAGCTTCCATTTGTT+TGG + chr5_1:55811448-55811467 Msa0738110:CDS 40.0%
AACCCAAACAAATGGAAGCT+TGG - chr5_1:55811454-55811473 None:intergenic 40.0%
AATATGTGTTGCAGCTACAG+CGG + chr5_1:55811477-55811496 Msa0738110:CDS 40.0%
! TGACATCCTTGTTGTGTCTT+AGG + chr5_1:55811624-55811643 Msa0738110:intron 40.0%
! GACATCCTTGTTGTGTCTTA+GGG + chr5_1:55811625-55811644 Msa0738110:intron 40.0%
TTGGAGCCATGTAAAGTAGA+AGG - chr5_1:55811670-55811689 None:intergenic 40.0%
TCTACTTTACATGGCTCCAA+TGG + chr5_1:55811670-55811689 Msa0738110:CDS 40.0%
AGAAGGAAAACAACAGCCAT+TGG - chr5_1:55811689-55811708 None:intergenic 40.0%
TATAGAGTGTAGCAGGAAGA+AGG - chr5_1:55811706-55811725 None:intergenic 40.0%
TCTTCCTGCTACACTCTATA+TGG + chr5_1:55811706-55811725 Msa0738110:CDS 40.0%
TCTTCCATATAGAGTGTAGC+AGG - chr5_1:55811713-55811732 None:intergenic 40.0%
AAATGTGATTGGCATCACGT+TGG + chr5_1:55811733-55811752 Msa0738110:CDS 40.0%
TGAATATACTGCCCTACTAC+AGG - chr5_1:55812117-55812136 None:intergenic 40.0%
TACTGATAGCAACTCTACGT+CGG - chr5_1:55812226-55812245 None:intergenic 40.0%
AGATTTCTTTGGCCAAAAGC+CGG + chr5_1:55812290-55812309 Msa0738110:intron 40.0%
TAGGTACTAGGGAATGCTAA+AGG + chr5_1:55812558-55812577 Msa0738110:intron 40.0%
AGGTACTAGGGAATGCTAAA+GGG + chr5_1:55812559-55812578 Msa0738110:intron 40.0%
TCATTCCAGTGACTGAAACT+GGG - chr5_1:55812623-55812642 None:intergenic 40.0%
ATCATTCCAGTGACTGAAAC+TGG - chr5_1:55812624-55812643 None:intergenic 40.0%
AGTTTCAGTCACTGGAATGA+TGG + chr5_1:55812623-55812642 Msa0738110:CDS 40.0%
GTTTCAGTCACTGGAATGAT+GGG + chr5_1:55812624-55812643 Msa0738110:CDS 40.0%
AACTGTCCAGAAATAGCTCA+TGG + chr5_1:55812872-55812891 Msa0738110:three_prime_UTR 40.0%
! TTGGTACCATGAGCTATTTC+TGG - chr5_1:55812881-55812900 None:intergenic 40.0%
TCTCTGTAGTATACCCATGT+TGG + chr5_1:55812919-55812938 Msa0738110:three_prime_UTR 40.0%
ATTCCTCAGTATGCCAACAT+GGG - chr5_1:55812935-55812954 None:intergenic 40.0%
!!! GGCAGTGTAGTTTTATGGTT+TGG + chr5_1:55813076-55813095 Msa0738110:three_prime_UTR 40.0%
AACGGGAACGCGTATACAAA+CGG - chr5_1:55809205-55809224 None:intergenic 45.0%
CATGGATCTGTGAAGAGGAA+TGG - chr5_1:55809322-55809341 None:intergenic 45.0%
GCATGGTACTCATCCAACAT+AGG + chr5_1:55809410-55809429 Msa0738110:CDS 45.0%
TAGGAGTAGGACTCCTATGT+TGG - chr5_1:55809426-55809445 None:intergenic 45.0%
ACATGCTGTCATGTGACACA+TGG - chr5_1:55809498-55809517 None:intergenic 45.0%
CGAGAACGCATGAATTGCAT+TGG - chr5_1:55809563-55809582 None:intergenic 45.0%
TGACGTTGAAGAGAGAAGCT+TGG + chr5_1:55809732-55809751 Msa0738110:CDS 45.0%
GCTCTTGTTCCTGTTGTTAC+TGG + chr5_1:55809767-55809786 Msa0738110:CDS 45.0%
!! ACTGGTGTTGTCATTGCTAG+TGG + chr5_1:55809785-55809804 Msa0738110:CDS 45.0%
!! CTGGTGTTGTCATTGCTAGT+GGG + chr5_1:55809786-55809805 Msa0738110:CDS 45.0%
!! TGGTGTTGTCATTGCTAGTG+GGG + chr5_1:55809787-55809806 Msa0738110:CDS 45.0%
! GATCTGAGGTTCACACACAT+TGG - chr5_1:55810317-55810336 None:intergenic 45.0%
!! TGGTGTTGTCGTGTCAGTAT+CGG + chr5_1:55810482-55810501 Msa0738110:intron 45.0%
GCACAGACATTTCTCGGATT+AGG - chr5_1:55810537-55810556 None:intergenic 45.0%
!! CATGTATACGGTGTTGACGT+TGG + chr5_1:55810568-55810587 Msa0738110:intron 45.0%
CCCCAAGTTCAGTTACATAC+TGG - chr5_1:55810646-55810665 None:intergenic 45.0%
CGTCATGATCCTTCAAAGTG+CGG + chr5_1:55810788-55810807 Msa0738110:intron 45.0%
TCGATGTTGTGCCCAAATTG+CGG + chr5_1:55810871-55810890 Msa0738110:intron 45.0%
CAAAGTCCAAGACCGCAATT+TGG - chr5_1:55810886-55810905 None:intergenic 45.0%
GGAGCTAGACTCCTGTTAAA+AGG + chr5_1:55810918-55810937 Msa0738110:intron 45.0%
CGTTTCATTTCACATGGCAG+CGG - chr5_1:55811220-55811239 None:intergenic 45.0%
!!! GTGGTGTTCTCTGTTTTTGG+TGG + chr5_1:55811317-55811336 Msa0738110:intron 45.0%
! GAAGGGTATGTATGAGTAGC+AGG + chr5_1:55811544-55811563 Msa0738110:intron 45.0%
CTTCTCCCTAAGACACAACA+AGG - chr5_1:55811633-55811652 None:intergenic 45.0%
! AAAAGGGAGGCATACCTGAA+GGG - chr5_1:55811870-55811889 None:intergenic 45.0%
CAACTAAAAAGACAGCAGGC+AGG - chr5_1:55811947-55811966 None:intergenic 45.0%
!! CTGCCTGCTGTCTTTTTAGT+TGG + chr5_1:55811945-55811964 Msa0738110:intron 45.0%
GGACCAACTAAAAAGACAGC+AGG - chr5_1:55811951-55811970 None:intergenic 45.0%
ACCTCTTGGAAAAGAGGTTC+AGG + chr5_1:55812058-55812077 Msa0738110:intron 45.0%
CCTCTTGGAAAAGAGGTTCA+GGG + chr5_1:55812059-55812078 Msa0738110:intron 45.0%
GGTACTAGGGAATGCTAAAG+GGG + chr5_1:55812560-55812579 Msa0738110:intron 45.0%
AGAAACCCAGTTTCAGTCAC+TGG + chr5_1:55812615-55812634 Msa0738110:CDS 45.0%
GGTTATTCACTCACAGTCCT+TGG + chr5_1:55812645-55812664 Msa0738110:CDS 45.0%
ATACCCATGTTGGCATACTG+AGG + chr5_1:55812929-55812948 Msa0738110:three_prime_UTR 45.0%
CATTCCTCAGTATGCCAACA+TGG - chr5_1:55812936-55812955 None:intergenic 45.0%
ACGGGAACGCGTATACAAAC+GGG - chr5_1:55809204-55809223 None:intergenic 50.0%
CTGTCATGTGACACATGGTG+AGG - chr5_1:55809493-55809512 None:intergenic 50.0%
TCAGCTACGTTGCAATCGCT+TGG + chr5_1:55809525-55809544 Msa0738110:CDS 50.0%
CGGTGATCACATATTGTCGG+TGG + chr5_1:55809944-55809963 Msa0738110:intron 50.0%
CTGAATTACAAGGGCTCCCT+AGG - chr5_1:55810276-55810295 None:intergenic 50.0%
TTTCTCTCTCCTCGGATCTG+AGG - chr5_1:55810331-55810350 None:intergenic 50.0%
ACAGATACAGACACGGACAC+TGG + chr5_1:55810385-55810404 Msa0738110:intron 50.0%
! GGTGTTGTCGTGTCAGTATC+GGG + chr5_1:55810483-55810502 Msa0738110:intron 50.0%
! TTCTCGGATTAGGCGTGTTC+CGG - chr5_1:55810527-55810546 None:intergenic 50.0%
TGCAGTTCTCCGCACTTTGA+AGG - chr5_1:55810800-55810819 None:intergenic 50.0%
GCCCTTAACCTTAGTTGCAG+AGG + chr5_1:55810838-55810857 Msa0738110:intron 50.0%
GCAATTTGGGCACAACATCG+AGG - chr5_1:55810872-55810891 None:intergenic 50.0%
TTGTGCCCAAATTGCGGTCT+TGG + chr5_1:55810877-55810896 Msa0738110:intron 50.0%
CAAGTGCGGAATTGAACAGC+AGG - chr5_1:55811793-55811812 None:intergenic 50.0%
! GAAAAGGGAGGCATACCTGA+AGG - chr5_1:55811871-55811890 None:intergenic 50.0%
! CCCTGAACCTCTTTTCCAAG+AGG - chr5_1:55812062-55812081 None:intergenic 50.0%
TGGATCCCTAAGCCTGTAGT+AGG + chr5_1:55812102-55812121 Msa0738110:intron 50.0%
GGATCCCTAAGCCTGTAGTA+GGG + chr5_1:55812103-55812122 Msa0738110:intron 50.0%
ACTGCCCTACTACAGGCTTA+GGG - chr5_1:55812110-55812129 None:intergenic 50.0%
TACTGCCCTACTACAGGCTT+AGG - chr5_1:55812111-55812130 None:intergenic 50.0%
!! AAATTGCAGCAGCCGGCTTT+TGG - chr5_1:55812305-55812324 None:intergenic 50.0%
CGGGAACGCGTATACAAACG+GGG - chr5_1:55809203-55809222 None:intergenic 55.0%
GTGTGTGAACCTCAGATCCG+AGG + chr5_1:55810319-55810338 Msa0738110:intron 55.0%
ACAGACACGGACACTGGACA+CGG + chr5_1:55810391-55810410 Msa0738110:intron 55.0%
GATTAGGCGTGTTCCGGTGT+CGG - chr5_1:55810521-55810540 None:intergenic 55.0%
TACCAGTGCTCTCACCCTTC+AGG + chr5_1:55811853-55811872 Msa0738110:CDS 55.0%
! TACCTGAAGGGTGAGAGCAC+TGG - chr5_1:55811858-55811877 None:intergenic 55.0%
CACGGACACTGGACACGGCA+TGG + chr5_1:55810396-55810415 Msa0738110:intron 65.0%
GCGCGACACGTGTCCGACAC+CGG + chr5_1:55810505-55810524 Msa0738110:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 55809090 55813151 55809090 ID=Msa0738110;Name=Msa0738110
chr5_1 mRNA 55809090 55813151 55809090 ID=Msa0738110-mRNA-1;Parent=Msa0738110;Name=Msa0738110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=278|1|1|1|1|1|4|444|306
chr5_1 exon 55809090 55809808 55809090 ID=Msa0738110-mRNA-1:exon:15746;Parent=Msa0738110-mRNA-1
chr5_1 exon 55811445 55811548 55811445 ID=Msa0738110-mRNA-1:exon:15747;Parent=Msa0738110-mRNA-1
chr5_1 exon 55811646 55811874 55811646 ID=Msa0738110-mRNA-1:exon:15748;Parent=Msa0738110-mRNA-1
chr5_1 exon 55812561 55813151 55812561 ID=Msa0738110-mRNA-1:exon:15749;Parent=Msa0738110-mRNA-1
chr5_1 five_prime_UTR 55809090 55809367 55809090 ID=Msa0738110-mRNA-1:five_prime_utr;Parent=Msa0738110-mRNA-1
chr5_1 CDS 55809368 55809808 55809368 ID=Msa0738110-mRNA-1:cds;Parent=Msa0738110-mRNA-1
chr5_1 CDS 55811445 55811548 55811445 ID=Msa0738110-mRNA-1:cds;Parent=Msa0738110-mRNA-1
chr5_1 CDS 55811646 55811874 55811646 ID=Msa0738110-mRNA-1:cds;Parent=Msa0738110-mRNA-1
chr5_1 CDS 55812561 55812707 55812561 ID=Msa0738110-mRNA-1:cds;Parent=Msa0738110-mRNA-1
chr5_1 three_prime_UTR 55812708 55813151 55812708 ID=Msa0738110-mRNA-1:three_prime_utr;Parent=Msa0738110-mRNA-1
Gene Sequence

>Msa0738110

ATGAAAGAATCAAGCAAAGCCTTCACAATAACATTAATCTCAGCATGGTACTCATCCAACATAGGAGTCCTACTCCTAAACAAGTATCTCCTTTCAAACTACGGTTTCAAATACCCAATTTTCCTCACCATGTGTCACATGACAGCATGTTCCTTATTCAGCTACGTTGCAATCGCTTGGTTCAAAATGGTTCCAATGCAATTCATGCGTTCTCGTCTTCAATTCTTTAAGATCGCTACTCTAAGTTTTATTTTCTGTGTTTCCGTTGTTTTTGGTAATGTTTCGTTACGGTATCTTCCTGTGTCGTTTAATCAAGCTATCGGTGCTACTACGCCGTTTTTTACTGCGGTTTTTGCTTATGCTATGACGTTGAAGAGAGAAGCTTGGCTTACTTATCTTGCTCTTGTTCCTGTTGTTACTGGTGTTGTCATTGCTAGTGGGGGTGAACCAAGCTTCCATTTGTTTGGGTTCATAATATGTGTTGCAGCTACAGCGGCACGAGCTCTAAAAACAGTGTTACAAGGAATTTTGCTTTCATCTGAAGGGGAGAAGCTGAATTCTATGAACCTTCTACTTTACATGGCTCCAATGGCTGTTGTTTTCCTTCTTCCTGCTACACTCTATATGGAAGAAAATGTGATTGGCATCACGTTGGCTCTTGCCAGAGATGATGTGAAGATCATTTGGTACCTGCTGTTCAATTCCGCACTTGCATATTTTGTCAATCTGACCAATTTTTTGGTCACAAAACATACCAGTGCTCTCACCCTTCAGGTACTAGGGAATGCTAAAGGGGCTGTAGCAGTTGTCGTTTCAATTCTAATATTTAGAAACCCAGTTTCAGTCACTGGAATGATGGGTTATTCACTCACAGTCCTTGGAGTTGTACTTTATAGTGAAGCCAAAAAGAGAAGCAAGTGA
Protein sequence

>Msa0738110

MKESSKAFTITLISAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYVAIAWFKMVPMQFMRSRLQFFKIATLSFIFCVSVVFGNVSLRYLPVSFNQAIGATTPFFTAVFAYAMTLKREAWLTYLALVPVVTGVVIASGGEPSFHLFGFIICVAATAARALKTVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLYMEENVIGITLALARDDVKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYSLTVLGVVLYSEAKKRSK*