Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810710 | AES95423.2 | 90.840 | 524 | 41 | 2 | 1 | 523 | 1 | 518 | 0.0 | 973 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810710 | sp|P52420|PUR2_ARATH | 72.211 | 511 | 130 | 3 | 19 | 521 | 22 | 528 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810710 | G7K3Z1 | 90.840 | 524 | 41 | 2 | 1 | 523 | 1 | 518 | 0.0 | 973 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723820 | Msa0810710 | 0.858920 | 5.914126e-63 | -8.615850e-47 |
| Msa0723830 | Msa0810710 | 0.844086 | 9.395770e-59 | -8.615850e-47 |
| Msa0764270 | Msa0810710 | 0.886161 | 4.351389e-72 | -8.615850e-47 |
| Msa0803670 | Msa0810710 | 0.849103 | 4.008960e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810710 | MtrunA17_Chr5g0407981 | 90.649 | 524 | 41 | 3 | 1 | 523 | 1 | 517 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810710 | AT1G09830.1 | 72.211 | 511 | 130 | 3 | 19 | 521 | 22 | 528 | 0.0 | 747 |
Find 166 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCGGGTCTGCTTCTTTC+TGG | 0.056888 | 5_3:-39454209 | None:intergenic |
| ATAAATGAGTAGAGGAATTT+TGG | 0.135958 | 5_3:-39454536 | None:intergenic |
| CATGAAAGAGATTGAGGTTT+TGG | 0.158790 | 5_3:-39454053 | None:intergenic |
| AAGTTCTGCTTGCTGCTTGC+AGG | 0.217650 | 5_3:+39456971 | Msa0810710:CDS |
| ATTAAAAGATTCATCAACTA+TGG | 0.265214 | 5_3:-39457448 | None:intergenic |
| ATGATGGTGAAGGGTGATTT+TGG | 0.268370 | 5_3:+39455999 | Msa0810710:CDS |
| ATGAATACGTGAACTGCTTA+TGG | 0.270074 | 5_3:-39454178 | None:intergenic |
| ATTATCATGCCAACAGTAAA+AGG | 0.276043 | 5_3:+39456239 | Msa0810710:CDS |
| CTAGTCCCACTCCCCATTTC+CGG | 0.278883 | 5_3:-39454969 | None:intergenic |
| GCACCCATGCCACCAGTATT+TGG | 0.280418 | 5_3:-39456161 | None:intergenic |
| TGGATTACCCTCACTTATAT+TGG | 0.283268 | 5_3:-39457428 | None:intergenic |
| TGAAGTTCCTCGGTTAAAAT+AGG | 0.288190 | 5_3:-39456197 | None:intergenic |
| CCTGAAGCCCCACTTGTTGC+AGG | 0.303334 | 5_3:+39455003 | Msa0810710:CDS |
| AGGATGGTTGTTCTGGTTAT+TGG | 0.303663 | 5_3:+39454784 | Msa0810710:CDS |
| GTATCACTGGACTGGTCTCC+TGG | 0.325942 | 5_3:+39457009 | Msa0810710:CDS |
| GAAGGAAGATTTATTGCAAC+TGG | 0.331396 | 5_3:+39457171 | Msa0810710:CDS |
| TAATAAATAGAAAGCGAAAA+AGG | 0.340827 | 5_3:-39454351 | None:intergenic |
| AAGTGTATATTGATAACTTT+GGG | 0.348606 | 5_3:-39454088 | None:intergenic |
| AGAAGAAAGGATGGTTGTTC+TGG | 0.350493 | 5_3:+39454777 | Msa0810710:intron |
| AACAATCAATAACAGTGAAT+TGG | 0.351831 | 5_3:+39457385 | Msa0810710:three_prime_UTR |
| GCATGGAATATCTTGATATC+TGG | 0.352212 | 5_3:-39457129 | None:intergenic |
| GGGTCTTTCTGCTCTTTAAT+AGG | 0.355953 | 5_3:-39457673 | None:intergenic |
| GAGCGGGTCTGCTTCTTTCT+GGG | 0.355978 | 5_3:-39454208 | None:intergenic |
| CACCATCACCAACTCTCTTA+TGG | 0.363196 | 5_3:-39456130 | None:intergenic |
| ATGAGTGAAGCTTAAATTCA+AGG | 0.372123 | 5_3:-39454565 | None:intergenic |
| GGATTCTATCGTCGGGATAT+TGG | 0.375330 | 5_3:+39457288 | Msa0810710:CDS |
| AAGGCTGGAATTCCGACTTT+TGG | 0.376671 | 5_3:+39455045 | Msa0810710:CDS |
| AAAGTGTATATTGATAACTT+TGG | 0.378155 | 5_3:-39454089 | None:intergenic |
| GCAGAGGCTGCTGCTCTAGA+AGG | 0.395754 | 5_3:+39455075 | Msa0810710:CDS |
| CCTGCAACAAGTGGGGCTTC+AGG | 0.395959 | 5_3:-39455003 | None:intergenic |
| CAACAAGCTCAGCTTCTTCA+AGG | 0.401913 | 5_3:-39457104 | None:intergenic |
| TGAATACGTGAACTGCTTAT+GGG | 0.404091 | 5_3:-39454177 | None:intergenic |
| TCTGCTTCTTTCTGGGTTTG+AGG | 0.409281 | 5_3:-39454201 | None:intergenic |
| AGTTCTGCTTGCTGCTTGCA+GGG | 0.410296 | 5_3:+39456972 | Msa0810710:CDS |
| CCATCGGCTTTGATAACAAT+TGG | 0.410397 | 5_3:-39455909 | None:intergenic |
| TCTTTCAAATTATTTAGTTA+AGG | 0.411140 | 5_3:+39455026 | Msa0810710:CDS |
| TCAAATTATTTAGTTAAGGC+TGG | 0.411335 | 5_3:+39455030 | Msa0810710:CDS |
| GTGCATATTCCTAAGAAGAA+AGG | 0.415827 | 5_3:+39454764 | Msa0810710:intron |
| AGAATGCTTACTTGAATTGT+TGG | 0.418543 | 5_3:-39454676 | None:intergenic |
| CATCAAGTTTCTAACCCGTC+TGG | 0.418627 | 5_3:+39454492 | Msa0810710:CDS |
| CAGACGGGTTAGAAACTTGA+TGG | 0.420090 | 5_3:-39454491 | None:intergenic |
| ATTGAGTATAATGTGCGATT+TGG | 0.421542 | 5_3:+39456344 | Msa0810710:CDS |
| TCCTGGATCGGCCATGGTTG+TGG | 0.425274 | 5_3:+39457026 | Msa0810710:CDS |
| CAAAACATTTGAAAACACTT+TGG | 0.426128 | 5_3:-39454611 | None:intergenic |
| GGTTCGGTTGGAGTCTGATT+TGG | 0.434602 | 5_3:+39456945 | Msa0810710:CDS |
| TTACACAGGTCTTGATGGTT+CGG | 0.436632 | 5_3:+39456929 | Msa0810710:intron |
| GATGGACTGGCTGCTGGAAA+AGG | 0.441425 | 5_3:+39455927 | Msa0810710:CDS |
| ATTATACATGAAAGAGATTG+AGG | 0.447726 | 5_3:-39454059 | None:intergenic |
| GCAGAAGGTCGTAAGTTTGT+TGG | 0.452921 | 5_3:+39456269 | Msa0810710:CDS |
| AGTTCCCTTCTCATATGATC+CGG | 0.457216 | 5_3:-39457070 | None:intergenic |
| CTCATATTGTTACTTCTGTA+CGG | 0.457872 | 5_3:-39457694 | None:intergenic |
| ATTGTGACAAGGTCAGTAAT+AGG | 0.458217 | 5_3:+39457354 | Msa0810710:three_prime_UTR |
| TACTATAGATTGAAGTTCCT+CGG | 0.460702 | 5_3:-39456207 | None:intergenic |
| CTGGCGATTCCTGCATTACC+AGG | 0.467109 | 5_3:-39454880 | None:intergenic |
| TTGACACATGTTTCTGAGGA+AGG | 0.467112 | 5_3:-39457320 | None:intergenic |
| AAAGCCGATGGACTGGCTGC+TGG | 0.467487 | 5_3:+39455921 | Msa0810710:CDS |
| GAGCGGAAGGAAGGAGATGA+AGG | 0.469632 | 5_3:-39454255 | None:intergenic |
| TTCTGTGCTCCTGGTAATGC+AGG | 0.476738 | 5_3:+39454871 | Msa0810710:CDS |
| ATCGGCCATGGTTGTGGTAA+TGG | 0.478772 | 5_3:+39457032 | Msa0810710:CDS |
| GTTCTGGTTATTGGTGAAGA+AGG | 0.480331 | 5_3:+39454793 | Msa0810710:CDS |
| ACTTATATTGGAGATGCTCT+AGG | 0.482634 | 5_3:-39457416 | None:intergenic |
| ACAGGTCTTGATGGTTCGGT+TGG | 0.484956 | 5_3:+39456933 | Msa0810710:intron |
| ATTGTTGAGGAATTTCTAGA+AGG | 0.486684 | 5_3:+39456041 | Msa0810710:CDS |
| AGAGTTGAGTGGTGTATCAC+TGG | 0.488231 | 5_3:+39456996 | Msa0810710:CDS |
| CTGGTCTCCTGGATCGGCCA+TGG | 0.489094 | 5_3:+39457020 | Msa0810710:CDS |
| AAGACACGCGAGCGGAAGGA+AGG | 0.489163 | 5_3:-39454264 | None:intergenic |
| ACATTATACTCAATTAACTT+AGG | 0.490907 | 5_3:-39456335 | None:intergenic |
| GAGTGACTGCGCAAGATCAA+AGG | 0.495132 | 5_3:-39454150 | None:intergenic |
| TCTTGCACCACCTTCAATGT+TGG | 0.500411 | 5_3:+39454438 | Msa0810710:CDS |
| TGTTATCAAAGCCGATGGAC+TGG | 0.502419 | 5_3:+39455914 | Msa0810710:CDS |
| GTTCTTGGGGTTACAGCAAA+GGG | 0.503275 | 5_3:+39457201 | Msa0810710:CDS |
| GAAGAAGACACGCGAGCGGA+AGG | 0.504767 | 5_3:-39454268 | None:intergenic |
| GTTGAGAATGTGAACTGGCC+AGG | 0.508310 | 5_3:+39457264 | Msa0810710:CDS |
| ACCACAACCATGGCCGATCC+AGG | 0.508477 | 5_3:-39457027 | None:intergenic |
| AGGCAATATATTCAAGAAGA+AGG | 0.509444 | 5_3:+39455882 | Msa0810710:CDS |
| GAAAGAAGTTCCAACATTGA+AGG | 0.509915 | 5_3:-39454448 | None:intergenic |
| AGTGACTGCGCAAGATCAAA+GGG | 0.513803 | 5_3:-39454149 | None:intergenic |
| GGTGACACAGGGCCAAATAC+TGG | 0.517092 | 5_3:+39456149 | Msa0810710:CDS |
| TGACACATGTTTCTGAGGAA+GGG | 0.518633 | 5_3:-39457319 | None:intergenic |
| ATTTGGTGATCCAGAGTGCC+AGG | 0.519355 | 5_3:+39456361 | Msa0810710:CDS |
| TCATATTGTTACTTCTGTAC+GGG | 0.522406 | 5_3:-39457693 | None:intergenic |
| TATACGGATTAAGTAATTGA+CGG | 0.522416 | 5_3:+39457735 | Msa0810710:three_prime_UTR |
| AATGGAACGTGCGTGTGAGC+GGG | 0.522725 | 5_3:-39454224 | None:intergenic |
| AATGCAGGAATCGCCAGCTC+AGG | 0.523733 | 5_3:+39454886 | Msa0810710:CDS |
| GCAAGTCGCATTTCCTGAGC+TGG | 0.523866 | 5_3:-39454899 | None:intergenic |
| ATATATTGCCTTGCTGCGGA+TGG | 0.524592 | 5_3:-39455870 | None:intergenic |
| AGTTCAATGTCAACTTCTCT+AGG | 0.526075 | 5_3:-39457616 | None:intergenic |
| GTTCTGCTTGCTGCTTGCAG+GGG | 0.528528 | 5_3:+39456973 | Msa0810710:CDS |
| ATCAAGTTTCTAACCCGTCT+GGG | 0.530266 | 5_3:+39454493 | Msa0810710:CDS |
| AGGGCCAAATACTGGTGGCA+TGG | 0.531074 | 5_3:+39456157 | Msa0810710:CDS |
| ACTTAACTGACCTGGCACTC+TGG | 0.532548 | 5_3:-39456371 | None:intergenic |
| TCCTCGGTTAAAATAGGAGC+GGG | 0.532872 | 5_3:-39456191 | None:intergenic |
| AGTGATTTCTGAACCCAGAC+GGG | 0.536927 | 5_3:-39454506 | None:intergenic |
| GGAGTGGGACTAGTTGTTGT+GGG | 0.537068 | 5_3:+39454979 | Msa0810710:CDS |
| ATATGCTTCTTCAAGTGTCA+TGG | 0.538051 | 5_3:-39455961 | None:intergenic |
| TCTATCGTCGGGATATTGGT+TGG | 0.538281 | 5_3:+39457292 | Msa0810710:CDS |
| TATATTGCCTTGCTGCGGAT+GGG | 0.542430 | 5_3:-39455869 | None:intergenic |
| GGAACTTCAATCTATAGTAA+TGG | 0.543780 | 5_3:+39456211 | Msa0810710:CDS |
| AGAGTTGGTGATGGTGACAC+AGG | 0.544390 | 5_3:+39456137 | Msa0810710:CDS |
| TGTTCTTGGGGTTACAGCAA+AGG | 0.545679 | 5_3:+39457200 | Msa0810710:CDS |
| GGGCCAAATACTGGTGGCAT+GGG | 0.551071 | 5_3:+39456158 | Msa0810710:CDS |
| AGCACAGAATACAGTATCGC+AGG | 0.554069 | 5_3:-39454857 | None:intergenic |
| TTGAGAATGTGAACTGGCCA+GGG | 0.555410 | 5_3:+39457265 | Msa0810710:CDS |
| ACCTTTGACACATGTTTCTG+AGG | 0.555474 | 5_3:-39457324 | None:intergenic |
| TTCTTCAAGTGTCATGGCAA+CGG | 0.559738 | 5_3:-39455955 | None:intergenic |
| TCCTCAGAAACATGTGTCAA+AGG | 0.560954 | 5_3:+39457323 | Msa0810710:CDS |
| AGAGCAGCAGCCTCTGCAGA+TGG | 0.563220 | 5_3:-39455069 | None:intergenic |
| TGGTCCTGAGCTGATTCTAG+TGG | 0.566864 | 5_3:-39456110 | None:intergenic |
| AAGGAAGATTTATTGCAACT+GGG | 0.570074 | 5_3:+39457172 | Msa0810710:CDS |
| AAATGGAACGTGCGTGTGAG+CGG | 0.573129 | 5_3:-39454225 | None:intergenic |
| GTTCCCTTCTCATATGATCC+GGG | 0.573231 | 5_3:-39457069 | None:intergenic |
| TCAGACCTTGATGTTTGTGA+TGG | 0.577116 | 5_3:+39454925 | Msa0810710:CDS |
| ACTGGACTGGTCTCCTGGAT+CGG | 0.579914 | 5_3:+39457014 | Msa0810710:CDS |
| GTATGATATTCCAACTGCTA+AGG | 0.581971 | 5_3:+39455131 | Msa0810710:CDS |
| GATACTGTATTCTGTGCTCC+TGG | 0.581982 | 5_3:+39454862 | Msa0810710:CDS |
| ATGGCAAGTAAAGGATATCC+CGG | 0.582009 | 5_3:+39457051 | Msa0810710:CDS |
| GTTGTGGTAATGGCAAGTAA+AGG | 0.584088 | 5_3:+39457042 | Msa0810710:CDS |
| GATATCAAGATATTCCATGC+TGG | 0.584948 | 5_3:+39457132 | Msa0810710:CDS |
| GGGAGTGGGACTAGTTGTTG+TGG | 0.587947 | 5_3:+39454978 | Msa0810710:CDS |
| CACTTTGCTATGCGTTACAA+CGG | 0.589760 | 5_3:+39454827 | Msa0810710:CDS |
| AGAAGACAGACCTTAGCAGT+TGG | 0.591379 | 5_3:-39455141 | None:intergenic |
| GCTCAGGACCATAAGAGAGT+TGG | 0.593929 | 5_3:+39456122 | Msa0810710:CDS |
| GAAACTTGATGGTTAATGCA+TGG | 0.594873 | 5_3:-39454480 | None:intergenic |
| AGCATCTCCAATATAAGTGA+GGG | 0.596396 | 5_3:+39457421 | Msa0810710:three_prime_UTR |
| TTGAAAGACCTGCAACAAGT+GGG | 0.599268 | 5_3:-39455011 | None:intergenic |
| TTTGAAAGACCTGCAACAAG+TGG | 0.600759 | 5_3:-39455012 | None:intergenic |
| AAGCTGTTGAGAATGTGAAC+TGG | 0.600765 | 5_3:+39457259 | Msa0810710:CDS |
| CCAATTGTTATCAAAGCCGA+TGG | 0.603526 | 5_3:+39455909 | Msa0810710:CDS |
| TTTATTAGAAGATGAAGTAG+CGG | 0.606015 | 5_3:-39454384 | None:intergenic |
| ATATCCCGGATCATATGAGA+AGG | 0.606039 | 5_3:+39457065 | Msa0810710:CDS |
| GGAACTGCTTCAGATTCTGA+AGG | 0.606903 | 5_3:+39457153 | Msa0810710:CDS |
| ACTTGCCATTACCACAACCA+TGG | 0.611693 | 5_3:-39457037 | None:intergenic |
| AAGTGATTTCTGAACCCAGA+CGG | 0.612744 | 5_3:-39454507 | None:intergenic |
| TGAGTGGTGTATCACTGGAC+TGG | 0.613928 | 5_3:+39457001 | Msa0810710:CDS |
| AATTCCACTAGAATCAGCTC+AGG | 0.614376 | 5_3:+39456106 | Msa0810710:CDS |
| CTGCACCATCACAAACATCA+AGG | 0.618468 | 5_3:-39454930 | None:intergenic |
| GTAAAAGGAATGTCAGCAGA+AGG | 0.618962 | 5_3:+39456254 | Msa0810710:CDS |
| AATCTGAAGCAGTTCCAGCA+TGG | 0.624986 | 5_3:-39457146 | None:intergenic |
| TGAAAGACCTGCAACAAGTG+GGG | 0.625237 | 5_3:-39455010 | None:intergenic |
| TTGAATATATTGCCTTGCTG+CGG | 0.629155 | 5_3:-39455874 | None:intergenic |
| TGAAGCAGTTGATTCAATGA+TGG | 0.629647 | 5_3:+39455983 | Msa0810710:CDS |
| GAGCATCTCCAATATAAGTG+AGG | 0.634649 | 5_3:+39457420 | Msa0810710:three_prime_UTR |
| GCTTGCAGGGGAGAGTTGAG+TGG | 0.637437 | 5_3:+39456985 | Msa0810710:CDS |
| AGGAAGATTTATTGCAACTG+GGG | 0.637656 | 5_3:+39457173 | Msa0810710:CDS |
| TCTGCAGATGGACCAAAAGT+CGG | 0.638443 | 5_3:-39455057 | None:intergenic |
| AGTTGATTCAATGATGGTGA+AGG | 0.638741 | 5_3:+39455989 | Msa0810710:CDS |
| AGGTTGTCGTGTCATTGTTG+AGG | 0.640873 | 5_3:+39456028 | Msa0810710:CDS |
| GGAAGATTTATTGCAACTGG+GGG | 0.641822 | 5_3:+39457174 | Msa0810710:CDS |
| GAGTTGGTGATGGTGACACA+GGG | 0.642541 | 5_3:+39456138 | Msa0810710:CDS |
| AGAAGTTCCAACATTGAAGG+TGG | 0.645826 | 5_3:-39454445 | None:intergenic |
| GACCATAAGAGAGTTGGTGA+TGG | 0.648658 | 5_3:+39456128 | Msa0810710:CDS |
| CGGAAGGAAGGAGATGAAGG+CGG | 0.655353 | 5_3:-39454252 | None:intergenic |
| ATATTCCTAAGAAGAAAGGA+TGG | 0.668291 | 5_3:+39454768 | Msa0810710:intron |
| TATCCCGGATCATATGAGAA+GGG | 0.670919 | 5_3:+39457066 | Msa0810710:CDS |
| TTCCTCGGTTAAAATAGGAG+CGG | 0.674048 | 5_3:-39456192 | None:intergenic |
| GTTGATTCAATGATGGTGAA+GGG | 0.681410 | 5_3:+39455990 | Msa0810710:CDS |
| AGGTGTAAACTATTGTGACA+AGG | 0.681822 | 5_3:+39457343 | Msa0810710:exon |
| CAGAATACAGTATCGCAGGA+CGG | 0.684316 | 5_3:-39454853 | None:intergenic |
| AAAGGGAAATGATCTCGAAG+AGG | 0.685275 | 5_3:+39457218 | Msa0810710:CDS |
| GACACAGGGCCAAATACTGG+TGG | 0.686532 | 5_3:+39456152 | Msa0810710:CDS |
| TTACAGACCCATCCGCAGCA+AGG | 0.690175 | 5_3:+39455862 | Msa0810710:CDS |
| AGGGTTGGCATAGATAACCC+AGG | 0.694290 | 5_3:-39457574 | None:intergenic |
| TCTTGAAGAAGACACGCGAG+CGG | 0.710565 | 5_3:-39454272 | None:intergenic |
| TGAGAATGTGAACTGGCCAG+GGG | 0.720727 | 5_3:+39457266 | Msa0810710:CDS |
| CCAGGCATAAAAGATCACCT+AGG | 0.727326 | 5_3:-39457556 | None:intergenic |
| GAGAATGTGAACTGGCCAGG+GGG | 0.755542 | 5_3:+39457267 | Msa0810710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTTTTCATATTATA+CGG | + | chr5_3:39457719-39457738 | Msa0810710:three_prime_UTR | 10.0% |
| !! | TCTTTCAAATTATTTAGTTA+AGG | + | chr5_3:39455026-39455045 | Msa0810710:CDS | 15.0% |
| !!! | TCTTAATATTTTTATTAGTC+AGG | + | chr5_3:39455658-39455677 | Msa0810710:intron | 15.0% |
| !!! | ACATTTTTAAAAGAACAATA+GGG | - | chr5_3:39456591-39456610 | None:intergenic | 15.0% |
| !!! | AACATTTTTAAAAGAACAAT+AGG | - | chr5_3:39456592-39456611 | None:intergenic | 15.0% |
| !!! | TTGGTTTTATTAAAAACAAA+AGG | + | chr5_3:39456811-39456830 | Msa0810710:intron | 15.0% |
| !!! | TGGTTTTATTAAAAACAAAA+GGG | + | chr5_3:39456812-39456831 | Msa0810710:intron | 15.0% |
| !!! | TATCTTTTTGCTTTTTAATA+GGG | - | chr5_3:39457596-39457615 | None:intergenic | 15.0% |
| !!! | AAGTGTATATTGATAACTTT+GGG | - | chr5_3:39454091-39454110 | None:intergenic | 20.0% |
| !!! | AAAGTGTATATTGATAACTT+TGG | - | chr5_3:39454092-39454111 | None:intergenic | 20.0% |
| !! | TAATAAATAGAAAGCGAAAA+AGG | - | chr5_3:39454354-39454373 | None:intergenic | 20.0% |
| !! | ATATCATTCCAATAAAACAA+GGG | - | chr5_3:39455201-39455220 | None:intergenic | 20.0% |
| !! | AATATCATTCCAATAAAACA+AGG | - | chr5_3:39455202-39455221 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTAGTCAGGT+TGG | + | chr5_3:39455662-39455681 | Msa0810710:intron | 20.0% |
| !! | ACATTATACTCAATTAACTT+AGG | - | chr5_3:39456338-39456357 | None:intergenic | 20.0% |
| !!! | AGAATGTATTTCAATTTTCA+CGG | - | chr5_3:39456437-39456456 | None:intergenic | 20.0% |
| !! | ATATAGTTATCATATATGCA+TGG | + | chr5_3:39456506-39456525 | Msa0810710:intron | 20.0% |
| !!! | TTGTTAACTTTTCTTTGTTT+TGG | + | chr5_3:39456644-39456663 | Msa0810710:intron | 20.0% |
| !!! | GGTTTTATTAAAAACAAAAG+GGG | + | chr5_3:39456813-39456832 | Msa0810710:intron | 20.0% |
| !!! | GTTTTATTAAAAACAAAAGG+GGG | + | chr5_3:39456814-39456833 | Msa0810710:intron | 20.0% |
| !! | ATTAAAAGATTCATCAACTA+TGG | - | chr5_3:39457451-39457470 | None:intergenic | 20.0% |
| !!! | TTTTGTATAACAGAATTGAT+AGG | + | chr5_3:39457476-39457495 | Msa0810710:three_prime_UTR | 20.0% |
| !!! | GTATCTTTTTGCTTTTTAAT+AGG | - | chr5_3:39457597-39457616 | None:intergenic | 20.0% |
| ! | ATTATACATGAAAGAGATTG+AGG | - | chr5_3:39454062-39454081 | None:intergenic | 25.0% |
| ! | AAATCGAAAACTTACTTGAT+TGG | - | chr5_3:39454303-39454322 | None:intergenic | 25.0% |
| ! | TTTATTAGAAGATGAAGTAG+CGG | - | chr5_3:39454387-39454406 | None:intergenic | 25.0% |
| !!! | AAACTGTGTAATTTTGAAAC+AGG | + | chr5_3:39454405-39454424 | Msa0810710:five_prime_UTR | 25.0% |
| !! | ATAAATGAGTAGAGGAATTT+TGG | - | chr5_3:39454539-39454558 | None:intergenic | 25.0% |
| !! | GGTTTTTAATAAATGAGTAG+AGG | - | chr5_3:39454547-39454566 | None:intergenic | 25.0% |
| ! | CAAAACATTTGAAAACACTT+TGG | - | chr5_3:39454614-39454633 | None:intergenic | 25.0% |
| ! | TCAAATTATTTAGTTAAGGC+TGG | + | chr5_3:39455030-39455049 | Msa0810710:CDS | 25.0% |
| !! | TCTTAATTTTGTTCAGTACT+AGG | + | chr5_3:39455272-39455291 | Msa0810710:intron | 25.0% |
| ! | CTAAGTTGTTTATACAAACA+TGG | - | chr5_3:39455299-39455318 | None:intergenic | 25.0% |
| ! | TATATCGTAAGAGTTTATCA+TGG | + | chr5_3:39455328-39455347 | Msa0810710:intron | 25.0% |
| !!! | AGTTTTAATTGAACCTTGTA+GGG | - | chr5_3:39455574-39455593 | None:intergenic | 25.0% |
| ! | GGAATAAAGAGAACAAATAA+GGG | - | chr5_3:39455738-39455757 | None:intergenic | 25.0% |
| ! | TGGAATAAAGAGAACAAATA+AGG | - | chr5_3:39455739-39455758 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTCCATGTATA+TGG | + | chr5_3:39455745-39455764 | Msa0810710:intron | 25.0% |
| ! | TCCATTATAAGTAAACACTA+TGG | - | chr5_3:39455819-39455838 | None:intergenic | 25.0% |
| !! | CTTAAAGTCTAGAACTTATA+AGG | + | chr5_3:39456455-39456474 | Msa0810710:intron | 25.0% |
| ! | ATAAAACCAATGAGATTGTT+TGG | - | chr5_3:39456801-39456820 | None:intergenic | 25.0% |
| !!! | TTCCTTTTGAAATTTTACAC+AGG | + | chr5_3:39456915-39456934 | Msa0810710:intron | 25.0% |
| ! | AACAATCAATAACAGTGAAT+TGG | + | chr5_3:39457385-39457404 | Msa0810710:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTTTTTAATAGGGT+TGG | - | chr5_3:39457592-39457611 | None:intergenic | 25.0% |
| !! | TATACGGATTAAGTAATTGA+CGG | + | chr5_3:39457735-39457754 | Msa0810710:three_prime_UTR | 25.0% |
| ATAGAAAGCGAAAAAGGTTT+AGG | - | chr5_3:39454348-39454367 | None:intergenic | 30.0% | |
| ATGAGTGAAGCTTAAATTCA+AGG | - | chr5_3:39454568-39454587 | None:intergenic | 30.0% | |
| AGAATGCTTACTTGAATTGT+TGG | - | chr5_3:39454679-39454698 | None:intergenic | 30.0% | |
| ATATTCCTAAGAAGAAAGGA+TGG | + | chr5_3:39454768-39454787 | Msa0810710:intron | 30.0% | |
| AATCACTTGCAAGACTATTT+GGG | - | chr5_3:39455512-39455531 | None:intergenic | 30.0% | |
| TAATCACTTGCAAGACTATT+TGG | - | chr5_3:39455513-39455532 | None:intergenic | 30.0% | |
| !!! | CAGTTTTAATTGAACCTTGT+AGG | - | chr5_3:39455575-39455594 | None:intergenic | 30.0% |
| GCCATAGTGTTTACTTATAA+TGG | + | chr5_3:39455815-39455834 | Msa0810710:intron | 30.0% | |
| AGGCAATATATTCAAGAAGA+AGG | + | chr5_3:39455882-39455901 | Msa0810710:CDS | 30.0% | |
| ! | ATTGTTGAGGAATTTCTAGA+AGG | + | chr5_3:39456041-39456060 | Msa0810710:CDS | 30.0% |
| ATCAACCAATGCAAAAAATG+AGG | - | chr5_3:39456075-39456094 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTGCATTGGTTGA+TGG | + | chr5_3:39456074-39456093 | Msa0810710:CDS | 30.0% |
| TACTATAGATTGAAGTTCCT+CGG | - | chr5_3:39456210-39456229 | None:intergenic | 30.0% | |
| GGAACTTCAATCTATAGTAA+TGG | + | chr5_3:39456211-39456230 | Msa0810710:CDS | 30.0% | |
| ATTATCATGCCAACAGTAAA+AGG | + | chr5_3:39456239-39456258 | Msa0810710:CDS | 30.0% | |
| CTTATGATTGAGAAAAAGTC+TGG | + | chr5_3:39456308-39456327 | Msa0810710:CDS | 30.0% | |
| ATTGAGTATAATGTGCGATT+TGG | + | chr5_3:39456344-39456363 | Msa0810710:CDS | 30.0% | |
| AATTTATGACTTAACTGACC+TGG | - | chr5_3:39456382-39456401 | None:intergenic | 30.0% | |
| TCGATGACACAAATTGTATT+AGG | + | chr5_3:39456480-39456499 | Msa0810710:intron | 30.0% | |
| ATTCTTTGACATGCTTATCT+TGG | + | chr5_3:39456750-39456769 | Msa0810710:intron | 30.0% | |
| GACCTGTGTAAAATTTCAAA+AGG | - | chr5_3:39456920-39456939 | None:intergenic | 30.0% | |
| ! | AAATTTTACACAGGTCTTGA+TGG | + | chr5_3:39456924-39456943 | Msa0810710:intron | 30.0% |
| AAGGAAGATTTATTGCAACT+GGG | + | chr5_3:39457172-39457191 | Msa0810710:CDS | 30.0% | |
| ! | TCATATTGTTACTTCTGTAC+GGG | - | chr5_3:39457696-39457715 | None:intergenic | 30.0% |
| ! | CTCATATTGTTACTTCTGTA+CGG | - | chr5_3:39457697-39457716 | None:intergenic | 30.0% |
| TGAATACGTGAACTGCTTAT+GGG | - | chr5_3:39454180-39454199 | None:intergenic | 35.0% | |
| ATGAATACGTGAACTGCTTA+TGG | - | chr5_3:39454181-39454200 | None:intergenic | 35.0% | |
| GAAAGAAGTTCCAACATTGA+AGG | - | chr5_3:39454451-39454470 | None:intergenic | 35.0% | |
| ! | GAAACTTGATGGTTAATGCA+TGG | - | chr5_3:39454483-39454502 | None:intergenic | 35.0% |
| GTGCATATTCCTAAGAAGAA+AGG | + | chr5_3:39454764-39454783 | Msa0810710:intron | 35.0% | |
| AACAACCATCCTTTCTTCTT+AGG | - | chr5_3:39454776-39454795 | None:intergenic | 35.0% | |
| GTATGATATTCCAACTGCTA+AGG | + | chr5_3:39455131-39455150 | Msa0810710:CDS | 35.0% | |
| !!! | ACGATTGACCCTTGTTTTAT+TGG | + | chr5_3:39455190-39455209 | Msa0810710:intron | 35.0% |
| !! | GTTGTTTTCATAAGCCATCT+TGG | + | chr5_3:39455422-39455441 | Msa0810710:intron | 35.0% |
| TTGTCATAAACTCTCCAAGA+TGG | - | chr5_3:39455439-39455458 | None:intergenic | 35.0% | |
| CTGTCTAGTATTTGTAATGC+TGG | + | chr5_3:39455592-39455611 | Msa0810710:intron | 35.0% | |
| AGGAAAATAGACAAACAGGA+AGG | - | chr5_3:39455784-39455803 | None:intergenic | 35.0% | |
| AAACACTATGGCAAAAACCT+GGG | - | chr5_3:39455807-39455826 | None:intergenic | 35.0% | |
| TAAACACTATGGCAAAAACC+TGG | - | chr5_3:39455808-39455827 | None:intergenic | 35.0% | |
| TTGAATATATTGCCTTGCTG+CGG | - | chr5_3:39455877-39455896 | None:intergenic | 35.0% | |
| ATATGCTTCTTCAAGTGTCA+TGG | - | chr5_3:39455964-39455983 | None:intergenic | 35.0% | |
| ! | TGAAGCAGTTGATTCAATGA+TGG | + | chr5_3:39455983-39456002 | Msa0810710:CDS | 35.0% |
| ! | AGTTGATTCAATGATGGTGA+AGG | + | chr5_3:39455989-39456008 | Msa0810710:CDS | 35.0% |
| ! | GTTGATTCAATGATGGTGAA+GGG | + | chr5_3:39455990-39456009 | Msa0810710:CDS | 35.0% |
| !!! | AGAAGCCTCATTTTTTGCAT+TGG | + | chr5_3:39456067-39456086 | Msa0810710:CDS | 35.0% |
| TGAAGTTCCTCGGTTAAAAT+AGG | - | chr5_3:39456200-39456219 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGTTTTGTATGC+TGG | + | chr5_3:39456284-39456303 | Msa0810710:CDS | 35.0% |
| !! | TTGTTGGTGTTTTGTATGCT+GGG | + | chr5_3:39456285-39456304 | Msa0810710:CDS | 35.0% |
| AGTCGGTAGTTAAGATATGT+TGG | + | chr5_3:39456534-39456553 | Msa0810710:intron | 35.0% | |
| ! | GATGAAAGTTGTGAAAGTGT+CGG | - | chr5_3:39456726-39456745 | None:intergenic | 35.0% |
| ATGTGATCATCCGTTATCAA+AGG | - | chr5_3:39456847-39456866 | None:intergenic | 35.0% | |
| GCATGGAATATCTTGATATC+TGG | - | chr5_3:39457132-39457151 | None:intergenic | 35.0% | |
| GATATCAAGATATTCCATGC+TGG | + | chr5_3:39457132-39457151 | Msa0810710:CDS | 35.0% | |
| GAAGGAAGATTTATTGCAAC+TGG | + | chr5_3:39457171-39457190 | Msa0810710:CDS | 35.0% | |
| AGGAAGATTTATTGCAACTG+GGG | + | chr5_3:39457173-39457192 | Msa0810710:CDS | 35.0% | |
| AGGTGTAAACTATTGTGACA+AGG | + | chr5_3:39457343-39457362 | Msa0810710:exon | 35.0% | |
| ATTGTGACAAGGTCAGTAAT+AGG | + | chr5_3:39457354-39457373 | Msa0810710:three_prime_UTR | 35.0% | |
| ACTTATATTGGAGATGCTCT+AGG | - | chr5_3:39457419-39457438 | None:intergenic | 35.0% | |
| AGCATCTCCAATATAAGTGA+GGG | + | chr5_3:39457421-39457440 | Msa0810710:three_prime_UTR | 35.0% | |
| TGGATTACCCTCACTTATAT+TGG | - | chr5_3:39457431-39457450 | None:intergenic | 35.0% | |
| AAACAAAAACTGTCTCACCT+AGG | + | chr5_3:39457539-39457558 | Msa0810710:three_prime_UTR | 35.0% | |
| AGTTCAATGTCAACTTCTCT+AGG | - | chr5_3:39457619-39457638 | None:intergenic | 35.0% | |
| AGAAGTTCCAACATTGAAGG+TGG | - | chr5_3:39454448-39454467 | None:intergenic | 40.0% | |
| ATCAAGTTTCTAACCCGTCT+GGG | + | chr5_3:39454493-39454512 | Msa0810710:CDS | 40.0% | |
| AAGTGATTTCTGAACCCAGA+CGG | - | chr5_3:39454510-39454529 | None:intergenic | 40.0% | |
| AGAAGAAAGGATGGTTGTTC+TGG | + | chr5_3:39454777-39454796 | Msa0810710:intron | 40.0% | |
| ! | AGGATGGTTGTTCTGGTTAT+TGG | + | chr5_3:39454784-39454803 | Msa0810710:CDS | 40.0% |
| ! | GTTCTGGTTATTGGTGAAGA+AGG | + | chr5_3:39454793-39454812 | Msa0810710:CDS | 40.0% |
| ! | CACTTTGCTATGCGTTACAA+CGG | + | chr5_3:39454827-39454846 | Msa0810710:CDS | 40.0% |
| TCAGACCTTGATGTTTGTGA+TGG | + | chr5_3:39454925-39454944 | Msa0810710:CDS | 40.0% | |
| !! | TAGAGTCATTTTGCCGGAAA+TGG | + | chr5_3:39454956-39454975 | Msa0810710:CDS | 40.0% |
| !! | AGAGTCATTTTGCCGGAAAT+GGG | + | chr5_3:39454957-39454976 | Msa0810710:CDS | 40.0% |
| TTGAAAGACCTGCAACAAGT+GGG | - | chr5_3:39455014-39455033 | None:intergenic | 40.0% | |
| TTTGAAAGACCTGCAACAAG+TGG | - | chr5_3:39455015-39455034 | None:intergenic | 40.0% | |
| GGGTCAATCGTTGATATGTT+TGG | - | chr5_3:39455181-39455200 | None:intergenic | 40.0% | |
| TGTGATAAGTCGATCCAAAC+AGG | + | chr5_3:39455548-39455567 | Msa0810710:intron | 40.0% | |
| AGGGAAGAACACCATATACA+TGG | - | chr5_3:39455759-39455778 | None:intergenic | 40.0% | |
| ATAGACAAACAGGAAGGACA+GGG | - | chr5_3:39455778-39455797 | None:intergenic | 40.0% | |
| AATAGACAAACAGGAAGGAC+AGG | - | chr5_3:39455779-39455798 | None:intergenic | 40.0% | |
| TGGGAGGAAAATAGACAAAC+AGG | - | chr5_3:39455788-39455807 | None:intergenic | 40.0% | |
| ! | TGTTTGTCTATTTTCCTCCC+AGG | + | chr5_3:39455787-39455806 | Msa0810710:intron | 40.0% |
| !! | CCATCGGCTTTGATAACAAT+TGG | - | chr5_3:39455912-39455931 | None:intergenic | 40.0% |
| CCAATTGTTATCAAAGCCGA+TGG | + | chr5_3:39455909-39455928 | Msa0810710:CDS | 40.0% | |
| TTCTTCAAGTGTCATGGCAA+CGG | - | chr5_3:39455958-39455977 | None:intergenic | 40.0% | |
| !! | ATGATGGTGAAGGGTGATTT+TGG | + | chr5_3:39455999-39456018 | Msa0810710:CDS | 40.0% |
| AATTCCACTAGAATCAGCTC+AGG | + | chr5_3:39456106-39456125 | Msa0810710:CDS | 40.0% | |
| TTCCTCGGTTAAAATAGGAG+CGG | - | chr5_3:39456195-39456214 | None:intergenic | 40.0% | |
| ! | GCTGACATTCCTTTTACTGT+TGG | - | chr5_3:39456251-39456270 | None:intergenic | 40.0% |
| GTAAAAGGAATGTCAGCAGA+AGG | + | chr5_3:39456254-39456273 | Msa0810710:CDS | 40.0% | |
| ATATATGCATGGAGCACAGT+CGG | + | chr5_3:39456517-39456536 | Msa0810710:intron | 40.0% | |
| CAAGCACCAAACAATCTCAT+TGG | + | chr5_3:39456792-39456811 | Msa0810710:intron | 40.0% | |
| GGGTGTGTAACCTTTGATAA+CGG | + | chr5_3:39456834-39456853 | Msa0810710:intron | 40.0% | |
| ! | TTACACAGGTCTTGATGGTT+CGG | + | chr5_3:39456929-39456948 | Msa0810710:intron | 40.0% |
| !! | GTTGTGGTAATGGCAAGTAA+AGG | + | chr5_3:39457042-39457061 | Msa0810710:CDS | 40.0% |
| ATGGCAAGTAAAGGATATCC+CGG | + | chr5_3:39457051-39457070 | Msa0810710:CDS | 40.0% | |
| ATATCCCGGATCATATGAGA+AGG | + | chr5_3:39457065-39457084 | Msa0810710:CDS | 40.0% | |
| TATCCCGGATCATATGAGAA+GGG | + | chr5_3:39457066-39457085 | Msa0810710:CDS | 40.0% | |
| AGTTCCCTTCTCATATGATC+CGG | - | chr5_3:39457073-39457092 | None:intergenic | 40.0% | |
| GGAAGATTTATTGCAACTGG+GGG | + | chr5_3:39457174-39457193 | Msa0810710:CDS | 40.0% | |
| AAAGGGAAATGATCTCGAAG+AGG | + | chr5_3:39457218-39457237 | Msa0810710:CDS | 40.0% | |
| AAGCTGTTGAGAATGTGAAC+TGG | + | chr5_3:39457259-39457278 | Msa0810710:CDS | 40.0% | |
| ! | TGACACATGTTTCTGAGGAA+GGG | - | chr5_3:39457322-39457341 | None:intergenic | 40.0% |
| ! | TTGACACATGTTTCTGAGGA+AGG | - | chr5_3:39457323-39457342 | None:intergenic | 40.0% |
| TCCTCAGAAACATGTGTCAA+AGG | + | chr5_3:39457323-39457342 | Msa0810710:CDS | 40.0% | |
| ! | ACCTTTGACACATGTTTCTG+AGG | - | chr5_3:39457327-39457346 | None:intergenic | 40.0% |
| GAGCATCTCCAATATAAGTG+AGG | + | chr5_3:39457420-39457439 | Msa0810710:three_prime_UTR | 40.0% | |
| ! | CTAGGTGATCTTTTATGCCT+GGG | + | chr5_3:39457557-39457576 | Msa0810710:three_prime_UTR | 40.0% |
| GGGTCTTTCTGCTCTTTAAT+AGG | - | chr5_3:39457676-39457695 | None:intergenic | 40.0% | |
| AGTGACTGCGCAAGATCAAA+GGG | - | chr5_3:39454152-39454171 | None:intergenic | 45.0% | |
| TCTGCTTCTTTCTGGGTTTG+AGG | - | chr5_3:39454204-39454223 | None:intergenic | 45.0% | |
| ! | TCACACGCACGTTCCATTTT+TGG | + | chr5_3:39454229-39454248 | Msa0810710:five_prime_UTR | 45.0% |
| TCTTGCACCACCTTCAATGT+TGG | + | chr5_3:39454438-39454457 | Msa0810710:CDS | 45.0% | |
| !! | CAGACGGGTTAGAAACTTGA+TGG | - | chr5_3:39454494-39454513 | None:intergenic | 45.0% |
| CATCAAGTTTCTAACCCGTC+TGG | + | chr5_3:39454492-39454511 | Msa0810710:CDS | 45.0% | |
| AGTGATTTCTGAACCCAGAC+GGG | - | chr5_3:39454509-39454528 | None:intergenic | 45.0% | |
| CAGAATACAGTATCGCAGGA+CGG | - | chr5_3:39454856-39454875 | None:intergenic | 45.0% | |
| AGCACAGAATACAGTATCGC+AGG | - | chr5_3:39454860-39454879 | None:intergenic | 45.0% | |
| GATACTGTATTCTGTGCTCC+TGG | + | chr5_3:39454862-39454881 | Msa0810710:CDS | 45.0% | |
| CTGCACCATCACAAACATCA+AGG | - | chr5_3:39454933-39454952 | None:intergenic | 45.0% | |
| !! | CAGCTGTAGAGTCATTTTGC+CGG | + | chr5_3:39454950-39454969 | Msa0810710:CDS | 45.0% |
| !! | GAGTCATTTTGCCGGAAATG+GGG | + | chr5_3:39454958-39454977 | Msa0810710:CDS | 45.0% |
| TGAAAGACCTGCAACAAGTG+GGG | - | chr5_3:39455013-39455032 | None:intergenic | 45.0% | |
| ! | AAGGCTGGAATTCCGACTTT+TGG | + | chr5_3:39455045-39455064 | Msa0810710:CDS | 45.0% |
| TCTGCAGATGGACCAAAAGT+CGG | - | chr5_3:39455060-39455079 | None:intergenic | 45.0% | |
| AGAAGACAGACCTTAGCAGT+TGG | - | chr5_3:39455144-39455163 | None:intergenic | 45.0% | |
| TATATTGCCTTGCTGCGGAT+GGG | - | chr5_3:39455872-39455891 | None:intergenic | 45.0% | |
| ATATATTGCCTTGCTGCGGA+TGG | - | chr5_3:39455873-39455892 | None:intergenic | 45.0% | |
| TGTTATCAAAGCCGATGGAC+TGG | + | chr5_3:39455914-39455933 | Msa0810710:CDS | 45.0% | |
| !!! | AAGGGTGATTTTGGTTCTGC+AGG | + | chr5_3:39456008-39456027 | Msa0810710:CDS | 45.0% |
| ! | AGGTTGTCGTGTCATTGTTG+AGG | + | chr5_3:39456028-39456047 | Msa0810710:CDS | 45.0% |
| !! | GACCATAAGAGAGTTGGTGA+TGG | + | chr5_3:39456128-39456147 | Msa0810710:CDS | 45.0% |
| CACCATCACCAACTCTCTTA+TGG | - | chr5_3:39456133-39456152 | None:intergenic | 45.0% | |
| TCCTCGGTTAAAATAGGAGC+GGG | - | chr5_3:39456194-39456213 | None:intergenic | 45.0% | |
| GCAGAAGGTCGTAAGTTTGT+TGG | + | chr5_3:39456269-39456288 | Msa0810710:CDS | 45.0% | |
| AGAGTTGAGTGGTGTATCAC+TGG | + | chr5_3:39456996-39457015 | Msa0810710:CDS | 45.0% | |
| ACTTGCCATTACCACAACCA+TGG | - | chr5_3:39457040-39457059 | None:intergenic | 45.0% | |
| GTTCCCTTCTCATATGATCC+GGG | - | chr5_3:39457072-39457091 | None:intergenic | 45.0% | |
| CAACAAGCTCAGCTTCTTCA+AGG | - | chr5_3:39457107-39457126 | None:intergenic | 45.0% | |
| ! | AATCTGAAGCAGTTCCAGCA+TGG | - | chr5_3:39457149-39457168 | None:intergenic | 45.0% |
| GGAACTGCTTCAGATTCTGA+AGG | + | chr5_3:39457153-39457172 | Msa0810710:CDS | 45.0% | |
| TGTTCTTGGGGTTACAGCAA+AGG | + | chr5_3:39457200-39457219 | Msa0810710:CDS | 45.0% | |
| GTTCTTGGGGTTACAGCAAA+GGG | + | chr5_3:39457201-39457220 | Msa0810710:CDS | 45.0% | |
| TTGAGAATGTGAACTGGCCA+GGG | + | chr5_3:39457265-39457284 | Msa0810710:CDS | 45.0% | |
| GGATTCTATCGTCGGGATAT+TGG | + | chr5_3:39457288-39457307 | Msa0810710:CDS | 45.0% | |
| TCTATCGTCGGGATATTGGT+TGG | + | chr5_3:39457292-39457311 | Msa0810710:CDS | 45.0% | |
| CCAGGCATAAAAGATCACCT+AGG | - | chr5_3:39457559-39457578 | None:intergenic | 45.0% | |
| ! | CCTAGGTGATCTTTTATGCC+TGG | + | chr5_3:39457556-39457575 | Msa0810710:three_prime_UTR | 45.0% |
| GAGTGACTGCGCAAGATCAA+AGG | - | chr5_3:39454153-39454172 | None:intergenic | 50.0% | |
| AAATGGAACGTGCGTGTGAG+CGG | - | chr5_3:39454228-39454247 | None:intergenic | 50.0% | |
| GAGATGAAGGCGGCCAAAAA+TGG | - | chr5_3:39454245-39454264 | None:intergenic | 50.0% | |
| TCTTGAAGAAGACACGCGAG+CGG | - | chr5_3:39454275-39454294 | None:intergenic | 50.0% | |
| ! | TTCTGTGCTCCTGGTAATGC+AGG | + | chr5_3:39454871-39454890 | Msa0810710:CDS | 50.0% |
| ! | ATTTTGCCGGAAATGGGGAG+TGG | + | chr5_3:39454963-39454982 | Msa0810710:CDS | 50.0% |
| ! | TTTTGCCGGAAATGGGGAGT+GGG | + | chr5_3:39454964-39454983 | Msa0810710:CDS | 50.0% |
| !! | GGAGTGGGACTAGTTGTTGT+GGG | + | chr5_3:39454979-39454998 | Msa0810710:CDS | 50.0% |
| ! | GACTTTTGGTCCATCTGCAG+AGG | + | chr5_3:39455059-39455078 | Msa0810710:CDS | 50.0% |
| TGAACCTTGTAGGGCCTGTT+TGG | - | chr5_3:39455565-39455584 | None:intergenic | 50.0% | |
| CACTATGGCAAAAACCTGGG+AGG | - | chr5_3:39455804-39455823 | None:intergenic | 50.0% | |
| ! | TTTTCCAGCAGCCAGTCCAT+CGG | - | chr5_3:39455928-39455947 | None:intergenic | 50.0% |
| ! | TGGTCCTGAGCTGATTCTAG+TGG | - | chr5_3:39456113-39456132 | None:intergenic | 50.0% |
| GCTCAGGACCATAAGAGAGT+TGG | + | chr5_3:39456122-39456141 | Msa0810710:CDS | 50.0% | |
| !! | AGAGTTGGTGATGGTGACAC+AGG | + | chr5_3:39456137-39456156 | Msa0810710:CDS | 50.0% |
| !! | GAGTTGGTGATGGTGACACA+GGG | + | chr5_3:39456138-39456157 | Msa0810710:CDS | 50.0% |
| !!! | TCCCGCTCCTATTTTAACCG+AGG | + | chr5_3:39456190-39456209 | Msa0810710:CDS | 50.0% |
| ! | ATTTGGTGATCCAGAGTGCC+AGG | + | chr5_3:39456361-39456380 | Msa0810710:CDS | 50.0% |
| ACTTAACTGACCTGGCACTC+TGG | - | chr5_3:39456374-39456393 | None:intergenic | 50.0% | |
| !! | ACAGGTCTTGATGGTTCGGT+TGG | + | chr5_3:39456933-39456952 | Msa0810710:intron | 50.0% |
| ! | GGTTCGGTTGGAGTCTGATT+TGG | + | chr5_3:39456945-39456964 | Msa0810710:CDS | 50.0% |
| ! | AAGTTCTGCTTGCTGCTTGC+AGG | + | chr5_3:39456971-39456990 | Msa0810710:CDS | 50.0% |
| ! | AGTTCTGCTTGCTGCTTGCA+GGG | + | chr5_3:39456972-39456991 | Msa0810710:CDS | 50.0% |
| TGAGTGGTGTATCACTGGAC+TGG | + | chr5_3:39457001-39457020 | Msa0810710:CDS | 50.0% | |
| ATCGGCCATGGTTGTGGTAA+TGG | + | chr5_3:39457032-39457051 | Msa0810710:CDS | 50.0% | |
| GTTGAGAATGTGAACTGGCC+AGG | + | chr5_3:39457264-39457283 | Msa0810710:CDS | 50.0% | |
| TGAGAATGTGAACTGGCCAG+GGG | + | chr5_3:39457266-39457285 | Msa0810710:CDS | 50.0% | |
| ! | AGGGTTGGCATAGATAACCC+AGG | - | chr5_3:39457577-39457596 | None:intergenic | 50.0% |
| GAGCGGGTCTGCTTCTTTCT+GGG | - | chr5_3:39454211-39454230 | None:intergenic | 55.0% | |
| TGAGCGGGTCTGCTTCTTTC+TGG | - | chr5_3:39454212-39454231 | None:intergenic | 55.0% | |
| AATGGAACGTGCGTGTGAGC+GGG | - | chr5_3:39454227-39454246 | None:intergenic | 55.0% | |
| CGGAAGGAAGGAGATGAAGG+CGG | - | chr5_3:39454255-39454274 | None:intergenic | 55.0% | |
| GAGCGGAAGGAAGGAGATGA+AGG | - | chr5_3:39454258-39454277 | None:intergenic | 55.0% | |
| CTGGCGATTCCTGCATTACC+AGG | - | chr5_3:39454883-39454902 | None:intergenic | 55.0% | |
| AATGCAGGAATCGCCAGCTC+AGG | + | chr5_3:39454886-39454905 | Msa0810710:CDS | 55.0% | |
| GCAAGTCGCATTTCCTGAGC+TGG | - | chr5_3:39454902-39454921 | None:intergenic | 55.0% | |
| CTAGTCCCACTCCCCATTTC+CGG | - | chr5_3:39454972-39454991 | None:intergenic | 55.0% | |
| !! | GGGAGTGGGACTAGTTGTTG+TGG | + | chr5_3:39454978-39454997 | Msa0810710:CDS | 55.0% |
| CGATCCAAACAGGCCCTACA+AGG | + | chr5_3:39455558-39455577 | Msa0810710:intron | 55.0% | |
| TTACAGACCCATCCGCAGCA+AGG | + | chr5_3:39455862-39455881 | Msa0810710:CDS | 55.0% | |
| !! | GATGGACTGGCTGCTGGAAA+AGG | + | chr5_3:39455927-39455946 | Msa0810710:CDS | 55.0% |
| GGTGACACAGGGCCAAATAC+TGG | + | chr5_3:39456149-39456168 | Msa0810710:CDS | 55.0% | |
| GACACAGGGCCAAATACTGG+TGG | + | chr5_3:39456152-39456171 | Msa0810710:CDS | 55.0% | |
| AGGGCCAAATACTGGTGGCA+TGG | + | chr5_3:39456157-39456176 | Msa0810710:CDS | 55.0% | |
| GGGCCAAATACTGGTGGCAT+GGG | + | chr5_3:39456158-39456177 | Msa0810710:CDS | 55.0% | |
| GCACCCATGCCACCAGTATT+TGG | - | chr5_3:39456164-39456183 | None:intergenic | 55.0% | |
| ! | GTTCTGCTTGCTGCTTGCAG+GGG | + | chr5_3:39456973-39456992 | Msa0810710:CDS | 55.0% |
| !! | GTATCACTGGACTGGTCTCC+TGG | + | chr5_3:39457009-39457028 | Msa0810710:CDS | 55.0% |
| !! | ACTGGACTGGTCTCCTGGAT+CGG | + | chr5_3:39457014-39457033 | Msa0810710:CDS | 55.0% |
| CAACTGGGGGTCGTGTTCTT+GGG | + | chr5_3:39457187-39457206 | Msa0810710:CDS | 55.0% | |
| AACTGGGGGTCGTGTTCTTG+GGG | + | chr5_3:39457188-39457207 | Msa0810710:CDS | 55.0% | |
| GAGAATGTGAACTGGCCAGG+GGG | + | chr5_3:39457267-39457286 | Msa0810710:CDS | 55.0% | |
| AAGACACGCGAGCGGAAGGA+AGG | - | chr5_3:39454267-39454286 | None:intergenic | 60.0% | |
| GAAGAAGACACGCGAGCGGA+AGG | - | chr5_3:39454271-39454290 | None:intergenic | 60.0% | |
| CCTGCAACAAGTGGGGCTTC+AGG | - | chr5_3:39455006-39455025 | None:intergenic | 60.0% | |
| ! | CCTGAAGCCCCACTTGTTGC+AGG | + | chr5_3:39455003-39455022 | Msa0810710:CDS | 60.0% |
| AGAGCAGCAGCCTCTGCAGA+TGG | - | chr5_3:39455072-39455091 | None:intergenic | 60.0% | |
| ! | GCAGAGGCTGCTGCTCTAGA+AGG | + | chr5_3:39455075-39455094 | Msa0810710:CDS | 60.0% |
| !! | AAAGCCGATGGACTGGCTGC+TGG | + | chr5_3:39455921-39455940 | Msa0810710:CDS | 60.0% |
| GCTTGCAGGGGAGAGTTGAG+TGG | + | chr5_3:39456985-39457004 | Msa0810710:CDS | 60.0% | |
| TCCTGGATCGGCCATGGTTG+TGG | + | chr5_3:39457026-39457045 | Msa0810710:CDS | 60.0% | |
| ACCACAACCATGGCCGATCC+AGG | - | chr5_3:39457030-39457049 | None:intergenic | 60.0% | |
| GCAACTGGGGGTCGTGTTCT+TGG | + | chr5_3:39457186-39457205 | Msa0810710:CDS | 60.0% | |
| GGCCAGGGGGATTCTATCGT+CGG | + | chr5_3:39457280-39457299 | Msa0810710:CDS | 60.0% | |
| GCCAGGGGGATTCTATCGTC+GGG | + | chr5_3:39457281-39457300 | Msa0810710:CDS | 60.0% | |
| TCCCGACGATAGAATCCCCC+TGG | - | chr5_3:39457285-39457304 | None:intergenic | 60.0% | |
| CTGGTCTCCTGGATCGGCCA+TGG | + | chr5_3:39457020-39457039 | Msa0810710:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 39454055 | 39457770 | 39454055 | ID=Msa0810710;Name=Msa0810710 |
| chr5_3 | mRNA | 39454055 | 39457770 | 39454055 | ID=Msa0810710-mRNA-1;Parent=Msa0810710;Name=Msa0810710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=347|0.75|0.8|1|0.75|0.6|5|420|523 |
| chr5_3 | exon | 39454055 | 39454279 | 39454055 | ID=Msa0810710-mRNA-1:exon:11947;Parent=Msa0810710-mRNA-1 |
| chr5_3 | exon | 39454313 | 39454687 | 39454313 | ID=Msa0810710-mRNA-1:exon:11948;Parent=Msa0810710-mRNA-1 |
| chr5_3 | exon | 39454779 | 39455152 | 39454779 | ID=Msa0810710-mRNA-1:exon:11949;Parent=Msa0810710-mRNA-1 |
| chr5_3 | exon | 39455852 | 39456382 | 39455852 | ID=Msa0810710-mRNA-1:exon:11950;Parent=Msa0810710-mRNA-1 |
| chr5_3 | exon | 39456937 | 39457770 | 39456937 | ID=Msa0810710-mRNA-1:exon:11951;Parent=Msa0810710-mRNA-1 |
| chr5_3 | five_prime_UTR | 39454055 | 39454279 | 39454055 | ID=Msa0810710-mRNA-1:five_prime_utr;Parent=Msa0810710-mRNA-1 |
| chr5_3 | five_prime_UTR | 39454313 | 39454434 | 39454313 | ID=Msa0810710-mRNA-1:five_prime_utr;Parent=Msa0810710-mRNA-1 |
| chr5_3 | CDS | 39454435 | 39454687 | 39454435 | ID=Msa0810710-mRNA-1:cds;Parent=Msa0810710-mRNA-1 |
| chr5_3 | CDS | 39454779 | 39455152 | 39454779 | ID=Msa0810710-mRNA-1:cds;Parent=Msa0810710-mRNA-1 |
| chr5_3 | CDS | 39455852 | 39456382 | 39455852 | ID=Msa0810710-mRNA-1:cds;Parent=Msa0810710-mRNA-1 |
| chr5_3 | CDS | 39456937 | 39457350 | 39456937 | ID=Msa0810710-mRNA-1:cds;Parent=Msa0810710-mRNA-1 |
| chr5_3 | three_prime_UTR | 39457351 | 39457770 | 39457351 | ID=Msa0810710-mRNA-1:three_prime_utr;Parent=Msa0810710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
