Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803670 | AES95423.2 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803670 | sp|P52420|PUR2_ARATH | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803670 | G7K3Z1 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061080 | Msa0803670 | 0.820414 | 6.945196e-53 | -8.615850e-47 |
| Msa0101700 | Msa0803670 | 0.813748 | 2.187371e-51 | -8.615850e-47 |
| Msa0610430 | Msa0803670 | 0.812785 | 3.559619e-51 | -8.615850e-47 |
| Msa0615710 | Msa0803670 | 0.839923 | 1.185207e-57 | -8.615850e-47 |
| Msa0663920 | Msa0803670 | 0.811195 | 7.904555e-51 | -8.615850e-47 |
| Msa0689260 | Msa0803670 | 0.806180 | 9.321654e-50 | -8.615850e-47 |
| Msa0692830 | Msa0803670 | 0.810718 | 1.002739e-50 | -8.615850e-47 |
| Msa0692950 | Msa0803670 | 0.825005 | 5.932800e-54 | -8.615850e-47 |
| Msa0711780 | Msa0803670 | 0.810100 | 1.363553e-50 | -8.615850e-47 |
| Msa0715700 | Msa0803670 | 0.817161 | 3.806529e-52 | -8.615850e-47 |
| Msa0723820 | Msa0803670 | 0.961677 | 5.573597e-120 | -8.615850e-47 |
| Msa0723830 | Msa0803670 | 0.992478 | 1.559617e-193 | -8.615850e-47 |
| Msa0743720 | Msa0803670 | 0.807272 | 5.481591e-50 | -8.615850e-47 |
| Msa0764270 | Msa0803670 | 0.817804 | 2.726766e-52 | -8.615850e-47 |
| Msa0765910 | Msa0803670 | 0.802564 | 5.285096e-49 | -8.615850e-47 |
| Msa0803670 | Msa0808080 | 0.833807 | 4.313971e-56 | -8.615850e-47 |
| Msa0803670 | Msa0810710 | 0.849103 | 4.008960e-60 | -8.615850e-47 |
| Msa0803670 | Msa0849030 | 0.832912 | 7.210656e-56 | -8.615850e-47 |
| Msa0803670 | Msa0938220 | 0.806451 | 8.173124e-50 | -8.615850e-47 |
| Msa0803670 | Msa0999970 | 0.802304 | 5.978755e-49 | -8.615850e-47 |
| Msa0803670 | Msa1003620 | 0.811421 | 7.060320e-51 | -8.615850e-47 |
| Msa0803670 | Msa1014540 | 0.802261 | 6.101733e-49 | -8.615850e-47 |
| Msa0803670 | Msa1030970 | 0.806767 | 7.011173e-50 | -8.615850e-47 |
| Msa0803670 | Msa1051200 | 0.816173 | 6.339656e-52 | -8.615850e-47 |
| Msa0803670 | Msa1100050 | 0.806303 | 8.782542e-50 | -8.615850e-47 |
| Msa0803670 | Msa1106700 | 0.800497 | 1.402019e-48 | -8.615850e-47 |
| Msa0803670 | Msa1124960 | 0.805589 | 1.241091e-49 | -8.615850e-47 |
| Msa0803670 | Msa1137700 | 0.804338 | 2.266697e-49 | -8.615850e-47 |
| Msa0803670 | Msa1138880 | 0.816946 | 4.255096e-52 | -8.615850e-47 |
| Msa0803670 | Msa1167340 | 0.809553 | 1.787957e-50 | -8.615850e-47 |
| Msa0803670 | Msa1174040 | 0.824316 | 8.622984e-54 | -8.615850e-47 |
| Msa0803670 | Msa1181250 | 0.812068 | 5.106992e-51 | -8.615850e-47 |
| Msa0803670 | Msa1181330 | 0.809828 | 1.560323e-50 | -8.615850e-47 |
| Msa0803670 | Msa1253020 | 0.808846 | 2.533397e-50 | -8.615850e-47 |
| Msa0803670 | Msa1274520 | 0.801235 | 9.907258e-49 | -8.615850e-47 |
| Msa0803670 | Msa1277660 | 0.813271 | 2.785003e-51 | -8.615850e-47 |
| Msa0803670 | Msa1284680 | 0.801775 | 7.678897e-49 | -8.615850e-47 |
| Msa0803670 | Msa1287460 | 0.811875 | 5.625696e-51 | -8.615850e-47 |
| Msa0803670 | Msa1358250 | 0.803218 | 3.871232e-49 | -8.615850e-47 |
| Msa0803670 | Msa1392780 | 0.803625 | 3.188733e-49 | -8.615850e-47 |
| Msa0803670 | Msa1427230 | 0.811682 | 6.196312e-51 | -8.615850e-47 |
| Msa0803670 | Msa1454480 | 0.813429 | 2.571379e-51 | -8.615850e-47 |
| Msa0803670 | Msa1460830 | 0.812691 | 3.732289e-51 | -8.615850e-47 |
| Msa0803670 | Msa1466540 | 0.805085 | 1.582253e-49 | -8.615850e-47 |
| Msa0127050 | Msa0803670 | 0.801757 | 7.744907e-49 | -8.615850e-47 |
| Msa0160550 | Msa0803670 | 0.811707 | 6.119356e-51 | -8.615850e-47 |
| Msa0180500 | Msa0803670 | 0.808031 | 3.781298e-50 | -8.615850e-47 |
| Msa0197660 | Msa0803670 | 0.804843 | 1.778086e-49 | -8.615850e-47 |
| Msa0205510 | Msa0803670 | 0.803331 | 3.668437e-49 | -8.615850e-47 |
| Msa0402790 | Msa0803670 | 0.802629 | 5.122994e-49 | -8.615850e-47 |
| Msa0407930 | Msa0803670 | 0.816601 | 5.083593e-52 | -8.615850e-47 |
| Msa0467380 | Msa0803670 | 0.805626 | 1.219253e-49 | -8.615850e-47 |
| Msa0239800 | Msa0803670 | 0.802567 | 5.276054e-49 | -8.615850e-47 |
| Msa0262050 | Msa0803670 | 0.801180 | 1.016989e-48 | -8.615850e-47 |
| Msa0280090 | Msa0803670 | 0.801539 | 8.586784e-49 | -8.615850e-47 |
| Msa0299870 | Msa0803670 | 0.801470 | 8.869861e-49 | -8.615850e-47 |
| Msa0317510 | Msa0803670 | 0.803558 | 3.291909e-49 | -8.615850e-47 |
| Msa0319170 | Msa0803670 | 0.801711 | 7.915204e-49 | -8.615850e-47 |
| Msa0339620 | Msa0803670 | 0.800281 | 1.550968e-48 | -8.615850e-47 |
| Msa0507440 | Msa0803670 | 0.812078 | 5.080958e-51 | -8.615850e-47 |
| Msa0512750 | Msa0803670 | 0.803274 | 3.770476e-49 | -8.615850e-47 |
| Msa0523940 | Msa0803670 | 0.810605 | 1.060722e-50 | -8.615850e-47 |
| Msa0578860 | Msa0803670 | 0.803276 | 3.765233e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803670 | MtrunA17_Chr5g0407981 | 90.458 | 524 | 43 | 2 | 1 | 524 | 1 | 517 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803670 | AT1G09830.1 | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
Find 159 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATGGGCAGAGGAATTT+TGG | 0.171331 | 5_3:-18958546 | None:intergenic |
| AAGTTCTGCTTGCTGCTTGC+AGG | 0.217650 | 5_3:+18960985 | Msa0803670:CDS |
| TAAGGTTCTTGAATGGAAAA+TGG | 0.236765 | 5_3:-18958319 | None:intergenic |
| ATTAAAAGATTCATCAACTA+TGG | 0.265214 | 5_3:-18961465 | None:intergenic |
| ATGATGGTGAAGGGTGATTT+TGG | 0.268370 | 5_3:+18960014 | Msa0803670:CDS |
| ATGAATACGTGAACTGCTTA+TGG | 0.270074 | 5_3:-18958237 | None:intergenic |
| ATTATCATGCCAACAGTAAA+AGG | 0.276043 | 5_3:+18960254 | Msa0803670:CDS |
| CTAGTCCCACTCCCCATTTC+CGG | 0.278883 | 5_3:-18958979 | None:intergenic |
| GCACCCATGCCACCAGTATT+TGG | 0.280418 | 5_3:-18960176 | None:intergenic |
| TGGATTACCCTCACTTATAT+TGG | 0.283268 | 5_3:-18961445 | None:intergenic |
| TGAAGTTCCTCGGTTAAAAT+AGG | 0.288190 | 5_3:-18960212 | None:intergenic |
| ATCAAATTTCTAACCCCTTT+GGG | 0.289790 | 5_3:+18958503 | Msa0803670:CDS |
| CCTGAAGCCCCACTTGTTGC+AGG | 0.303334 | 5_3:+18959013 | Msa0803670:CDS |
| AGGATGGTTGTTCTGGTTAT+TGG | 0.303663 | 5_3:+18958794 | Msa0803670:CDS |
| GTATCACTGGACTGGTCTCC+TGG | 0.325942 | 5_3:+18961023 | Msa0803670:CDS |
| GAAGGAAGATTTATTGCAAC+TGG | 0.331396 | 5_3:+18961185 | Msa0803670:CDS |
| TAATAAATAGAAAGCGAAAA+AGG | 0.331948 | 5_3:-18958344 | None:intergenic |
| CATCAAATTTCTAACCCCTT+TGG | 0.331950 | 5_3:+18958502 | Msa0803670:CDS |
| CAAAGGGGTTAGAAATTTGA+TGG | 0.343767 | 5_3:-18958501 | None:intergenic |
| AGAAGAAAGGATGGTTGTTC+TGG | 0.350493 | 5_3:+18958787 | Msa0803670:intron |
| AACAATCAATAACAGTGAAT+TGG | 0.351831 | 5_3:+18961402 | Msa0803670:three_prime_UTR |
| GCATGGAATATCTTGATATC+TGG | 0.352212 | 5_3:-18961143 | None:intergenic |
| GGGTCTTTCTGCTCTTTAAT+AGG | 0.355953 | 5_3:-18961690 | None:intergenic |
| CACCATCACCAACTCTCTTA+TGG | 0.363196 | 5_3:-18960145 | None:intergenic |
| ATGAGTGAAGCTTAAATTCA+AGG | 0.372123 | 5_3:-18958575 | None:intergenic |
| GGATTCTATCGTCGGGATAT+TGG | 0.375330 | 5_3:+18961302 | Msa0803670:CDS |
| AAGGCTGGAATTCCGACTTT+TGG | 0.376671 | 5_3:+18959055 | Msa0803670:CDS |
| GCAGAGGCTGCTGCTCTAGA+AGG | 0.395754 | 5_3:+18959085 | Msa0803670:CDS |
| CCTGCAACAAGTGGGGCTTC+AGG | 0.395959 | 5_3:-18959013 | None:intergenic |
| CAACAAGCTCAGCTTCTTCA+AGG | 0.401913 | 5_3:-18961118 | None:intergenic |
| GATGCTTCTTTCTGGGTTTG+AGG | 0.401959 | 5_3:-18958260 | None:intergenic |
| TGAATACGTGAACTGCTTAT+GGG | 0.404091 | 5_3:-18958236 | None:intergenic |
| AGTTCTGCTTGCTGCTTGCA+GGG | 0.410296 | 5_3:+18960986 | Msa0803670:CDS |
| CCATCGGCTTTGATAACAAT+TGG | 0.410397 | 5_3:-18959924 | None:intergenic |
| TCTTTCAAATTATTTAGTTA+AGG | 0.411140 | 5_3:+18959036 | Msa0803670:CDS |
| TCAAATTATTTAGTTAAGGC+TGG | 0.411335 | 5_3:+18959040 | Msa0803670:CDS |
| CTGGCGATTCCTGCATTGCC+AGG | 0.411607 | 5_3:-18958890 | None:intergenic |
| GTGCATATTCCTAAGAAGAA+AGG | 0.415827 | 5_3:+18958774 | Msa0803670:intron |
| ATTGAGTATAATGTGCGATT+TGG | 0.421542 | 5_3:+18960359 | Msa0803670:CDS |
| TCCTGGATCGGCCATGGTTG+TGG | 0.425274 | 5_3:+18961040 | Msa0803670:CDS |
| CAAAACATTTGAAAACACTT+TGG | 0.426128 | 5_3:-18958621 | None:intergenic |
| AATGGCAAGTAAAGGATATC+CGG | 0.429568 | 5_3:+18961064 | Msa0803670:CDS |
| GGTTCGGTTGGAGTCTGATT+TGG | 0.434602 | 5_3:+18960959 | Msa0803670:CDS |
| TTACACAGGTCTTGATGGTT+CGG | 0.436632 | 5_3:+18960943 | Msa0803670:intron |
| AGTGACTGCGCAAGATGAAA+AGG | 0.439796 | 5_3:-18958179 | None:intergenic |
| AGTGACTGCGCAAGATGAAA+AGG | 0.439796 | 5_3:-18958208 | None:intergenic |
| GATGGACTGGCTGCTGGAAA+AGG | 0.441425 | 5_3:+18959942 | Msa0803670:CDS |
| GCAGAAGGTCGTAAGTTTGT+TGG | 0.452921 | 5_3:+18960284 | Msa0803670:CDS |
| TTCTGTGCTCCTGGCAATGC+AGG | 0.456673 | 5_3:+18958881 | Msa0803670:CDS |
| CTCATATTGTTACTTCTGTA+CGG | 0.457872 | 5_3:-18961711 | None:intergenic |
| ATTGTGACAAGGTCAGTAAT+AGG | 0.458217 | 5_3:+18961371 | Msa0803670:three_prime_UTR |
| TACTATAGATTGAAGTTCCT+CGG | 0.460702 | 5_3:-18960222 | None:intergenic |
| AAAGGATTAAGGTTCTTGAA+TGG | 0.464719 | 5_3:-18958326 | None:intergenic |
| AAAGCCGATGGACTGGCTGC+TGG | 0.467487 | 5_3:+18959936 | Msa0803670:CDS |
| CACATGTTGTTTCTGAGGAA+GGG | 0.474074 | 5_3:-18961333 | None:intergenic |
| ATCGGCCATGGTTGTGGTAA+TGG | 0.478772 | 5_3:+18961046 | Msa0803670:CDS |
| GTTCTGGTTATTGGTGAAGA+AGG | 0.480331 | 5_3:+18958803 | Msa0803670:CDS |
| ACTTATATTGGAGATGCTCT+AGG | 0.482634 | 5_3:-18961433 | None:intergenic |
| ACAGGTCTTGATGGTTCGGT+TGG | 0.484956 | 5_3:+18960947 | Msa0803670:intron |
| ATTGTTGAGGAATTTCTAGA+AGG | 0.486684 | 5_3:+18960056 | Msa0803670:CDS |
| AAGTGGTTTCTGAACCCAAA+GGG | 0.488153 | 5_3:-18958517 | None:intergenic |
| AGAGTTGAGTGGTGTATCAC+TGG | 0.488231 | 5_3:+18961010 | Msa0803670:CDS |
| CTGGTCTCCTGGATCGGCCA+TGG | 0.489094 | 5_3:+18961034 | Msa0803670:CDS |
| ACATTATACTCAATTAACTT+AGG | 0.490907 | 5_3:-18960350 | None:intergenic |
| ATGGGGAGTGGGACTAGTTG+TGG | 0.494753 | 5_3:+18958985 | Msa0803670:CDS |
| ACACATGTTGTTTCTGAGGA+AGG | 0.495014 | 5_3:-18961334 | None:intergenic |
| TCTTGCACCACCTTCAATGT+TGG | 0.500411 | 5_3:+18958448 | Msa0803670:CDS |
| TGTTATCAAAGCCGATGGAC+TGG | 0.502419 | 5_3:+18959929 | Msa0803670:CDS |
| GTTCTTGGGGTTACAGCAAA+GGG | 0.503275 | 5_3:+18961215 | Msa0803670:CDS |
| GTTGAGAATGTGAACTGGCC+AGG | 0.508310 | 5_3:+18961278 | Msa0803670:CDS |
| ACCACAACCATGGCCGATCC+AGG | 0.508477 | 5_3:-18961041 | None:intergenic |
| AGGCAATATATTCAAGAAGA+AGG | 0.509444 | 5_3:+18959897 | Msa0803670:CDS |
| GAAAGAAGTTCCAACATTGA+AGG | 0.509915 | 5_3:-18958458 | None:intergenic |
| GGTGACACAGGGCCAAATAC+TGG | 0.517092 | 5_3:+18960164 | Msa0803670:CDS |
| AATGCAGGAATCGCCAGCTC+AGG | 0.518585 | 5_3:+18958896 | Msa0803670:CDS |
| ATTTGGTGATCCAGAGTGCC+AGG | 0.519355 | 5_3:+18960376 | Msa0803670:CDS |
| TCATATTGTTACTTCTGTAC+GGG | 0.522406 | 5_3:-18961710 | None:intergenic |
| TATACGGATTAAGTAATTGA+CGG | 0.522416 | 5_3:+18961752 | Msa0803670:three_prime_UTR |
| GCAAGTCGCATTTCCTGAGC+TGG | 0.523866 | 5_3:-18958909 | None:intergenic |
| ATATATTGCCTTGCTGCGGA+TGG | 0.524592 | 5_3:-18959885 | None:intergenic |
| AGTTCAATGTCAACTTCTCT+AGG | 0.526075 | 5_3:-18961633 | None:intergenic |
| GTTCTGCTTGCTGCTTGCAG+GGG | 0.528528 | 5_3:+18960987 | Msa0803670:CDS |
| AGGGCCAAATACTGGTGGCA+TGG | 0.531074 | 5_3:+18960172 | Msa0803670:CDS |
| ACTTAACTGACCTGGCACTC+TGG | 0.532548 | 5_3:-18960386 | None:intergenic |
| TCCTCGGTTAAAATAGGAGC+GGG | 0.532872 | 5_3:-18960206 | None:intergenic |
| ATATGCTTCTTCAAGTGTCA+TGG | 0.538051 | 5_3:-18959976 | None:intergenic |
| TCTATCGTCGGGATATTGGT+TGG | 0.538281 | 5_3:+18961306 | Msa0803670:CDS |
| TATATTGCCTTGCTGCGGAT+GGG | 0.542430 | 5_3:-18959884 | None:intergenic |
| GTGACTGCGCAAGATGAAAA+GGG | 0.542547 | 5_3:-18958178 | None:intergenic |
| GTGACTGCGCAAGATGAAAA+GGG | 0.542547 | 5_3:-18958207 | None:intergenic |
| GGAACTTCAATCTATAGTAA+TGG | 0.543780 | 5_3:+18960226 | Msa0803670:CDS |
| AGAGTTGGTGATGGTGACAC+AGG | 0.544390 | 5_3:+18960152 | Msa0803670:CDS |
| TGTTCTTGGGGTTACAGCAA+AGG | 0.545679 | 5_3:+18961214 | Msa0803670:CDS |
| GGGCCAAATACTGGTGGCAT+GGG | 0.551071 | 5_3:+18960173 | Msa0803670:CDS |
| AGCACAGAATACAGTATCGC+AGG | 0.554069 | 5_3:-18958867 | None:intergenic |
| TTGAGAATGTGAACTGGCCA+GGG | 0.555410 | 5_3:+18961279 | Msa0803670:CDS |
| GAAATTTGATGGTTAATGCA+TGG | 0.555985 | 5_3:-18958490 | None:intergenic |
| TTCTTCAAGTGTCATGGCAA+CGG | 0.559738 | 5_3:-18959970 | None:intergenic |
| AGAGCAGCAGCCTCTGCAGA+TGG | 0.563220 | 5_3:-18959079 | None:intergenic |
| TTTATTAGAAGATGAAGTAG+CGG | 0.565641 | 5_3:-18958394 | None:intergenic |
| TGGTCCTGAGCTGATTCTAG+TGG | 0.566864 | 5_3:-18960125 | None:intergenic |
| TTTGACACATGTTGTTTCTG+AGG | 0.567828 | 5_3:-18961338 | None:intergenic |
| AAGGAAGATTTATTGCAACT+GGG | 0.569664 | 5_3:+18961186 | Msa0803670:CDS |
| ATGGCAAGTAAAGGATATCC+GGG | 0.575678 | 5_3:+18961065 | Msa0803670:CDS |
| TCAGACCTTGATGTTTGTGA+TGG | 0.577116 | 5_3:+18958935 | Msa0803670:CDS |
| GATACTGTATTCTGTGCTCC+TGG | 0.577249 | 5_3:+18958872 | Msa0803670:CDS |
| GTTCCCTTCTCATATGATCC+CGG | 0.579563 | 5_3:-18961083 | None:intergenic |
| ACTGGACTGGTCTCCTGGAT+CGG | 0.579914 | 5_3:+18961028 | Msa0803670:CDS |
| TCAGAAACAACATGTGTCAA+AGG | 0.580030 | 5_3:+18961340 | Msa0803670:CDS |
| GTATGATATTCCAACTGCTA+AGG | 0.581971 | 5_3:+18959141 | Msa0803670:CDS |
| GTTGTGGTAATGGCAAGTAA+AGG | 0.584088 | 5_3:+18961056 | Msa0803670:CDS |
| GATATCAAGATATTCCATGC+TGG | 0.584948 | 5_3:+18961146 | Msa0803670:CDS |
| CACTTTGCTATGCGTTACAA+CGG | 0.589760 | 5_3:+18958837 | Msa0803670:CDS |
| AGAAGACAGACCTTAGCAGT+TGG | 0.591379 | 5_3:-18959151 | None:intergenic |
| GCTCAGGACCATAAGAGAGT+TGG | 0.593929 | 5_3:+18960137 | Msa0803670:CDS |
| AGCATCTCCAATATAAGTGA+GGG | 0.596396 | 5_3:+18961438 | Msa0803670:three_prime_UTR |
| TTGAAAGACCTGCAACAAGT+GGG | 0.599268 | 5_3:-18959021 | None:intergenic |
| TTTGAAAGACCTGCAACAAG+TGG | 0.600759 | 5_3:-18959022 | None:intergenic |
| AAGCTGTTGAGAATGTGAAC+TGG | 0.600765 | 5_3:+18961273 | Msa0803670:CDS |
| CCAATTGTTATCAAAGCCGA+TGG | 0.603526 | 5_3:+18959924 | Msa0803670:CDS |
| GGAACTGCTTCAGATTCTGA+AGG | 0.606903 | 5_3:+18961167 | Msa0803670:CDS |
| GGAAGATTTATTGCAACTGG+GGG | 0.611220 | 5_3:+18961188 | Msa0803670:CDS |
| ACTTGCCATTACCACAACCA+TGG | 0.611693 | 5_3:-18961051 | None:intergenic |
| TGAGTGGTGTATCACTGGAC+TGG | 0.613928 | 5_3:+18961015 | Msa0803670:CDS |
| ATATCCGGGATCATATGAGA+AGG | 0.614098 | 5_3:+18961079 | Msa0803670:CDS |
| AATTCCACTAGAATCAGCTC+AGG | 0.614376 | 5_3:+18960121 | Msa0803670:CDS |
| CTGCACCATCACAAACATCA+AGG | 0.618468 | 5_3:-18958940 | None:intergenic |
| GTAAAAGGAATGTCAGCAGA+AGG | 0.618962 | 5_3:+18960269 | Msa0803670:CDS |
| AATCTGAAGCAGTTCCAGCA+TGG | 0.624986 | 5_3:-18961160 | None:intergenic |
| TGAAAGACCTGCAACAAGTG+GGG | 0.625237 | 5_3:-18959020 | None:intergenic |
| GGAGTGGGACTAGTTGTGGT+GGG | 0.626311 | 5_3:+18958989 | Msa0803670:CDS |
| GGGAGTGGGACTAGTTGTGG+TGG | 0.628470 | 5_3:+18958988 | Msa0803670:CDS |
| AGGAAGATTTATTGCAACTG+GGG | 0.628668 | 5_3:+18961187 | Msa0803670:CDS |
| TTGAATATATTGCCTTGCTG+CGG | 0.629155 | 5_3:-18959889 | None:intergenic |
| TGAAGCAGTTGATTCAATGA+TGG | 0.629647 | 5_3:+18959998 | Msa0803670:CDS |
| TTGCTGTAACCCCAAGAACA+CGG | 0.631724 | 5_3:-18961211 | None:intergenic |
| GAGCATCTCCAATATAAGTG+AGG | 0.634649 | 5_3:+18961437 | Msa0803670:three_prime_UTR |
| GCTTGCAGGGGAGAGTTGAG+TGG | 0.637437 | 5_3:+18960999 | Msa0803670:CDS |
| TATCCGGGATCATATGAGAA+GGG | 0.637947 | 5_3:+18961080 | Msa0803670:CDS |
| TCTGCAGATGGACCAAAAGT+CGG | 0.638443 | 5_3:-18959067 | None:intergenic |
| AGTTGATTCAATGATGGTGA+AGG | 0.638741 | 5_3:+18960004 | Msa0803670:CDS |
| GAGTTGGTGATGGTGACACA+GGG | 0.642541 | 5_3:+18960153 | Msa0803670:CDS |
| AGAAGTTCCAACATTGAAGG+TGG | 0.645826 | 5_3:-18958455 | None:intergenic |
| GACCATAAGAGAGTTGGTGA+TGG | 0.648658 | 5_3:+18960143 | Msa0803670:CDS |
| AGGTGGTCGTGTCATTGTTG+AGG | 0.653092 | 5_3:+18960043 | Msa0803670:CDS |
| AGTGGTTTCTGAACCCAAAG+GGG | 0.667916 | 5_3:-18958516 | None:intergenic |
| ATATTCCTAAGAAGAAAGGA+TGG | 0.668291 | 5_3:+18958778 | Msa0803670:intron |
| TTCCTCGGTTAAAATAGGAG+CGG | 0.674048 | 5_3:-18960207 | None:intergenic |
| GTTGATTCAATGATGGTGAA+GGG | 0.681410 | 5_3:+18960005 | Msa0803670:CDS |
| AGGTGTAAACTATTGTGACA+AGG | 0.681822 | 5_3:+18961360 | Msa0803670:exon |
| CAGAATACAGTATCGCAGGA+CGG | 0.684316 | 5_3:-18958863 | None:intergenic |
| AAAGGGAAATGATCTCGAAG+AGG | 0.685275 | 5_3:+18961232 | Msa0803670:CDS |
| GACACAGGGCCAAATACTGG+TGG | 0.686532 | 5_3:+18960167 | Msa0803670:CDS |
| AAAGTGGTTTCTGAACCCAA+AGG | 0.686607 | 5_3:-18958518 | None:intergenic |
| TTACAGACCCATCCGCAGCA+AGG | 0.690175 | 5_3:+18959877 | Msa0803670:CDS |
| AGGGTTGGCATAGATAACCC+AGG | 0.694290 | 5_3:-18961591 | None:intergenic |
| TGAGAATGTGAACTGGCCAG+GGG | 0.720727 | 5_3:+18961280 | Msa0803670:CDS |
| CCAGGCATAAAAGATCACCT+AGG | 0.727326 | 5_3:-18961573 | None:intergenic |
| GAGAATGTGAACTGGCCAGG+GGG | 0.755542 | 5_3:+18961281 | Msa0803670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTTTTCATATTATA+CGG | + | chr5_3:18961736-18961755 | Msa0803670:three_prime_UTR | 10.0% |
| !!! | ATTCAAGGTTTTTAATAAAT+GGG | - | chr5_3:18958563-18958582 | None:intergenic | 15.0% |
| !!! | AATTCAAGGTTTTTAATAAA+TGG | - | chr5_3:18958564-18958583 | None:intergenic | 15.0% |
| !! | TCTTTCAAATTATTTAGTTA+AGG | + | chr5_3:18959036-18959055 | Msa0803670:CDS | 15.0% |
| !!! | TCTTAATATTTTTATTAGTC+AGG | + | chr5_3:18959673-18959692 | Msa0803670:intron | 15.0% |
| !!! | ACATTTTTAAAAGAACAATA+GGG | - | chr5_3:18960606-18960625 | None:intergenic | 15.0% |
| !!! | AACATTTTTAAAAGAACAAT+AGG | - | chr5_3:18960607-18960626 | None:intergenic | 15.0% |
| !!! | TTGGTTTTATTAAAAACAAA+AGG | + | chr5_3:18960826-18960845 | Msa0803670:intron | 15.0% |
| !!! | TGGTTTTATTAAAAACAAAA+GGG | + | chr5_3:18960827-18960846 | Msa0803670:intron | 15.0% |
| !!! | TATCTTTTTGCTTTTTAATA+GGG | - | chr5_3:18961613-18961632 | None:intergenic | 15.0% |
| !!! | GTACATTTTATTTCGAATTT+CGG | + | chr5_3:18958035-18958054 | Msa0803670:five_prime_UTR | 20.0% |
| !!! | ACATTTTAAAATGAATGAGT+GGG | - | chr5_3:18958065-18958084 | None:intergenic | 20.0% |
| !! | TAATAAATAGAAAGCGAAAA+AGG | - | chr5_3:18958347-18958366 | None:intergenic | 20.0% |
| !! | ATATCATTCCAATAAAACAA+GGG | - | chr5_3:18959211-18959230 | None:intergenic | 20.0% |
| !! | AATATCATTCCAATAAAACA+AGG | - | chr5_3:18959212-18959231 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTAGTCAGGT+TGG | + | chr5_3:18959677-18959696 | Msa0803670:intron | 20.0% |
| !! | ACATTATACTCAATTAACTT+AGG | - | chr5_3:18960353-18960372 | None:intergenic | 20.0% |
| !!! | ACAATGTATTTCAATTTTCA+CGG | - | chr5_3:18960452-18960471 | None:intergenic | 20.0% |
| !! | ATATAGTTATCATATATGCA+TGG | + | chr5_3:18960521-18960540 | Msa0803670:intron | 20.0% |
| !!! | GGTTTTATTAAAAACAAAAG+GGG | + | chr5_3:18960828-18960847 | Msa0803670:intron | 20.0% |
| !! | ATTAAAAGATTCATCAACTA+TGG | - | chr5_3:18961468-18961487 | None:intergenic | 20.0% |
| !!! | TTTTGTATAACAGAATTGAT+AGG | + | chr5_3:18961493-18961512 | Msa0803670:three_prime_UTR | 20.0% |
| !!! | GTATCTTTTTGCTTTTTAAT+AGG | - | chr5_3:18961614-18961633 | None:intergenic | 20.0% |
| !!! | CATTTTAAAATGAATGAGTG+GGG | - | chr5_3:18958064-18958083 | None:intergenic | 25.0% |
| !!! | CACATTTTAAAATGAATGAG+TGG | - | chr5_3:18958066-18958085 | None:intergenic | 25.0% |
| ! | TTTATTAGAAGATGAAGTAG+CGG | - | chr5_3:18958397-18958416 | None:intergenic | 25.0% |
| !!! | AAACTCTGTAATTTTGAAAC+AGG | + | chr5_3:18958415-18958434 | Msa0803670:five_prime_UTR | 25.0% |
| ! | CAAAACATTTGAAAACACTT+TGG | - | chr5_3:18958624-18958643 | None:intergenic | 25.0% |
| ! | TCAAATTATTTAGTTAAGGC+TGG | + | chr5_3:18959040-18959059 | Msa0803670:CDS | 25.0% |
| !! | CTAGTACTGAACAAAATTAA+GGG | - | chr5_3:18959289-18959308 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATACAAACA+TGG | - | chr5_3:18959314-18959333 | None:intergenic | 25.0% |
| ! | TATATCGTAAGAGTTTATCA+TGG | + | chr5_3:18959343-18959362 | Msa0803670:intron | 25.0% |
| !!! | AGTTTTAATTGAACCTTGTA+GGG | - | chr5_3:18959589-18959608 | None:intergenic | 25.0% |
| ! | GGAATAAAGAGAACAAATAA+GGG | - | chr5_3:18959753-18959772 | None:intergenic | 25.0% |
| ! | TGGAATAAAGAGAACAAATA+AGG | - | chr5_3:18959754-18959773 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTCCATGTATA+TGG | + | chr5_3:18959760-18959779 | Msa0803670:intron | 25.0% |
| ! | TCCATTATAAGTAAACACTA+TGG | - | chr5_3:18959834-18959853 | None:intergenic | 25.0% |
| !! | GTTAAAGTCTAGAACTTATA+AGG | + | chr5_3:18960470-18960489 | Msa0803670:intron | 25.0% |
| !!! | TTGTTCACTTTTCTTTGTTT+TGG | + | chr5_3:18960659-18960678 | Msa0803670:intron | 25.0% |
| ! | ATAAAACCAATGAGATTGTT+TGG | - | chr5_3:18960816-18960835 | None:intergenic | 25.0% |
| !!! | TTCCTTTTGAAATTTTACAC+AGG | + | chr5_3:18960929-18960948 | Msa0803670:intron | 25.0% |
| ! | AACAATCAATAACAGTGAAT+TGG | + | chr5_3:18961402-18961421 | Msa0803670:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTTTTTAATAGGGT+TGG | - | chr5_3:18961609-18961628 | None:intergenic | 25.0% |
| !! | TATACGGATTAAGTAATTGA+CGG | + | chr5_3:18961752-18961771 | Msa0803670:three_prime_UTR | 25.0% |
| TAAGGTTCTTGAATGGAAAA+TGG | - | chr5_3:18958322-18958341 | None:intergenic | 30.0% | |
| AAAGGATTAAGGTTCTTGAA+TGG | - | chr5_3:18958329-18958348 | None:intergenic | 30.0% | |
| TAGAAAGCGAAAAAGGATTA+AGG | - | chr5_3:18958340-18958359 | None:intergenic | 30.0% | |
| ! | GAAATTTGATGGTTAATGCA+TGG | - | chr5_3:18958493-18958512 | None:intergenic | 30.0% |
| ATCAAATTTCTAACCCCTTT+GGG | + | chr5_3:18958503-18958522 | Msa0803670:CDS | 30.0% | |
| !! | AGGAATTTTGGAAAGTAAAG+TGG | - | chr5_3:18958537-18958556 | None:intergenic | 30.0% |
| ATGAGTGAAGCTTAAATTCA+AGG | - | chr5_3:18958578-18958597 | None:intergenic | 30.0% | |
| ATATTCCTAAGAAGAAAGGA+TGG | + | chr5_3:18958778-18958797 | Msa0803670:intron | 30.0% | |
| ! | CCTAGTACTGAACAAAATTA+AGG | - | chr5_3:18959290-18959309 | None:intergenic | 30.0% |
| ! | CCTTAATTTTGTTCAGTACT+AGG | + | chr5_3:18959287-18959306 | Msa0803670:intron | 30.0% |
| AATCACTTGCAAGACTATTT+GGG | - | chr5_3:18959527-18959546 | None:intergenic | 30.0% | |
| TAATCACTTGCAAGACTATT+TGG | - | chr5_3:18959528-18959547 | None:intergenic | 30.0% | |
| !!! | CAGTTTTAATTGAACCTTGT+AGG | - | chr5_3:18959590-18959609 | None:intergenic | 30.0% |
| GCCATAGTGTTTACTTATAA+TGG | + | chr5_3:18959830-18959849 | Msa0803670:intron | 30.0% | |
| AGGCAATATATTCAAGAAGA+AGG | + | chr5_3:18959897-18959916 | Msa0803670:CDS | 30.0% | |
| ! | ATTGTTGAGGAATTTCTAGA+AGG | + | chr5_3:18960056-18960075 | Msa0803670:CDS | 30.0% |
| ATCAACCAATGCAAAAAATG+AGG | - | chr5_3:18960090-18960109 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTGCATTGGTTGA+TGG | + | chr5_3:18960089-18960108 | Msa0803670:CDS | 30.0% |
| TACTATAGATTGAAGTTCCT+CGG | - | chr5_3:18960225-18960244 | None:intergenic | 30.0% | |
| GGAACTTCAATCTATAGTAA+TGG | + | chr5_3:18960226-18960245 | Msa0803670:CDS | 30.0% | |
| ATTATCATGCCAACAGTAAA+AGG | + | chr5_3:18960254-18960273 | Msa0803670:CDS | 30.0% | |
| CTTATGATTGAGAAAAAGTC+TGG | + | chr5_3:18960323-18960342 | Msa0803670:CDS | 30.0% | |
| ATTGAGTATAATGTGCGATT+TGG | + | chr5_3:18960359-18960378 | Msa0803670:CDS | 30.0% | |
| AATTTATGACTTAACTGACC+TGG | - | chr5_3:18960397-18960416 | None:intergenic | 30.0% | |
| TCGATCACACAAATTGTATT+AGG | + | chr5_3:18960495-18960514 | Msa0803670:intron | 30.0% | |
| ATTCTTTGACATGCTTATCT+TGG | + | chr5_3:18960765-18960784 | Msa0803670:intron | 30.0% | |
| ATGTGATCATCTGTTATCAA+AGG | - | chr5_3:18960861-18960880 | None:intergenic | 30.0% | |
| GACCTGTGTAAAATTTCAAA+AGG | - | chr5_3:18960934-18960953 | None:intergenic | 30.0% | |
| ! | AAATTTTACACAGGTCTTGA+TGG | + | chr5_3:18960938-18960957 | Msa0803670:intron | 30.0% |
| AAGGAAGATTTATTGCAACT+GGG | + | chr5_3:18961186-18961205 | Msa0803670:CDS | 30.0% | |
| ! | TCATATTGTTACTTCTGTAC+GGG | - | chr5_3:18961713-18961732 | None:intergenic | 30.0% |
| ! | CTCATATTGTTACTTCTGTA+CGG | - | chr5_3:18961714-18961733 | None:intergenic | 30.0% |
| TGAATACGTGAACTGCTTAT+GGG | - | chr5_3:18958239-18958258 | None:intergenic | 35.0% | |
| ATGAATACGTGAACTGCTTA+TGG | - | chr5_3:18958240-18958259 | None:intergenic | 35.0% | |
| TGAAGAAGATGCTTCTTTCT+GGG | - | chr5_3:18958270-18958289 | None:intergenic | 35.0% | |
| TTGAAGAAGATGCTTCTTTC+TGG | - | chr5_3:18958271-18958290 | None:intergenic | 35.0% | |
| GAAAGAAGTTCCAACATTGA+AGG | - | chr5_3:18958461-18958480 | None:intergenic | 35.0% | |
| CAAAGGGGTTAGAAATTTGA+TGG | - | chr5_3:18958504-18958523 | None:intergenic | 35.0% | |
| CATCAAATTTCTAACCCCTT+TGG | + | chr5_3:18958502-18958521 | Msa0803670:CDS | 35.0% | |
| ! | ATAAATGGGCAGAGGAATTT+TGG | - | chr5_3:18958549-18958568 | None:intergenic | 35.0% |
| ! | GGTTTTTAATAAATGGGCAG+AGG | - | chr5_3:18958557-18958576 | None:intergenic | 35.0% |
| GTGCATATTCCTAAGAAGAA+AGG | + | chr5_3:18958774-18958793 | Msa0803670:intron | 35.0% | |
| AACAACCATCCTTTCTTCTT+AGG | - | chr5_3:18958786-18958805 | None:intergenic | 35.0% | |
| GTATGATATTCCAACTGCTA+AGG | + | chr5_3:18959141-18959160 | Msa0803670:CDS | 35.0% | |
| !!! | ACGATTGACCCTTGTTTTAT+TGG | + | chr5_3:18959200-18959219 | Msa0803670:intron | 35.0% |
| TTGTCATAAACTCTCCAAGA+TGG | - | chr5_3:18959454-18959473 | None:intergenic | 35.0% | |
| CTGTCTAGTATTTGTAATGC+TGG | + | chr5_3:18959607-18959626 | Msa0803670:intron | 35.0% | |
| AGGAAAATAGACAAACAGGA+AGG | - | chr5_3:18959799-18959818 | None:intergenic | 35.0% | |
| AAACACTATGGCAAAAACCT+GGG | - | chr5_3:18959822-18959841 | None:intergenic | 35.0% | |
| TAAACACTATGGCAAAAACC+TGG | - | chr5_3:18959823-18959842 | None:intergenic | 35.0% | |
| TTGAATATATTGCCTTGCTG+CGG | - | chr5_3:18959892-18959911 | None:intergenic | 35.0% | |
| ATATGCTTCTTCAAGTGTCA+TGG | - | chr5_3:18959979-18959998 | None:intergenic | 35.0% | |
| ! | TGAAGCAGTTGATTCAATGA+TGG | + | chr5_3:18959998-18960017 | Msa0803670:CDS | 35.0% |
| ! | AGTTGATTCAATGATGGTGA+AGG | + | chr5_3:18960004-18960023 | Msa0803670:CDS | 35.0% |
| ! | GTTGATTCAATGATGGTGAA+GGG | + | chr5_3:18960005-18960024 | Msa0803670:CDS | 35.0% |
| !!! | AGAAGCCTCATTTTTTGCAT+TGG | + | chr5_3:18960082-18960101 | Msa0803670:CDS | 35.0% |
| TGAAGTTCCTCGGTTAAAAT+AGG | - | chr5_3:18960215-18960234 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGTTTTGTATGC+TGG | + | chr5_3:18960299-18960318 | Msa0803670:CDS | 35.0% |
| !! | TTGTTGGTGTTTTGTATGCT+GGG | + | chr5_3:18960300-18960319 | Msa0803670:CDS | 35.0% |
| AGTCGGTAGTTAAGATATGT+TGG | + | chr5_3:18960549-18960568 | Msa0803670:intron | 35.0% | |
| ! | GATGAAAGTTGTGAAAGTGT+CGG | - | chr5_3:18960741-18960760 | None:intergenic | 35.0% |
| AATGGCAAGTAAAGGATATC+CGG | + | chr5_3:18961064-18961083 | Msa0803670:CDS | 35.0% | |
| GCATGGAATATCTTGATATC+TGG | - | chr5_3:18961146-18961165 | None:intergenic | 35.0% | |
| GATATCAAGATATTCCATGC+TGG | + | chr5_3:18961146-18961165 | Msa0803670:CDS | 35.0% | |
| GAAGGAAGATTTATTGCAAC+TGG | + | chr5_3:18961185-18961204 | Msa0803670:CDS | 35.0% | |
| AGGAAGATTTATTGCAACTG+GGG | + | chr5_3:18961187-18961206 | Msa0803670:CDS | 35.0% | |
| !! | TTTGACACATGTTGTTTCTG+AGG | - | chr5_3:18961341-18961360 | None:intergenic | 35.0% |
| TCAGAAACAACATGTGTCAA+AGG | + | chr5_3:18961340-18961359 | Msa0803670:CDS | 35.0% | |
| AGGTGTAAACTATTGTGACA+AGG | + | chr5_3:18961360-18961379 | Msa0803670:exon | 35.0% | |
| ATTGTGACAAGGTCAGTAAT+AGG | + | chr5_3:18961371-18961390 | Msa0803670:three_prime_UTR | 35.0% | |
| ACTTATATTGGAGATGCTCT+AGG | - | chr5_3:18961436-18961455 | None:intergenic | 35.0% | |
| AGCATCTCCAATATAAGTGA+GGG | + | chr5_3:18961438-18961457 | Msa0803670:three_prime_UTR | 35.0% | |
| TGGATTACCCTCACTTATAT+TGG | - | chr5_3:18961448-18961467 | None:intergenic | 35.0% | |
| AAACAAAAACTGTCTCACCT+AGG | + | chr5_3:18961556-18961575 | Msa0803670:three_prime_UTR | 35.0% | |
| AGTTCAATGTCAACTTCTCT+AGG | - | chr5_3:18961636-18961655 | None:intergenic | 35.0% | |
| AGAAGTTCCAACATTGAAGG+TGG | - | chr5_3:18958458-18958477 | None:intergenic | 40.0% | |
| AAGTGGTTTCTGAACCCAAA+GGG | - | chr5_3:18958520-18958539 | None:intergenic | 40.0% | |
| AAAGTGGTTTCTGAACCCAA+AGG | - | chr5_3:18958521-18958540 | None:intergenic | 40.0% | |
| AGAAGAAAGGATGGTTGTTC+TGG | + | chr5_3:18958787-18958806 | Msa0803670:intron | 40.0% | |
| ! | AGGATGGTTGTTCTGGTTAT+TGG | + | chr5_3:18958794-18958813 | Msa0803670:CDS | 40.0% |
| ! | GTTCTGGTTATTGGTGAAGA+AGG | + | chr5_3:18958803-18958822 | Msa0803670:CDS | 40.0% |
| ! | CACTTTGCTATGCGTTACAA+CGG | + | chr5_3:18958837-18958856 | Msa0803670:CDS | 40.0% |
| TCAGACCTTGATGTTTGTGA+TGG | + | chr5_3:18958935-18958954 | Msa0803670:CDS | 40.0% | |
| !! | TAGAGTCATTTTGCCGGAAA+TGG | + | chr5_3:18958966-18958985 | Msa0803670:CDS | 40.0% |
| !! | AGAGTCATTTTGCCGGAAAT+GGG | + | chr5_3:18958967-18958986 | Msa0803670:CDS | 40.0% |
| TTGAAAGACCTGCAACAAGT+GGG | - | chr5_3:18959024-18959043 | None:intergenic | 40.0% | |
| TTTGAAAGACCTGCAACAAG+TGG | - | chr5_3:18959025-18959044 | None:intergenic | 40.0% | |
| GGGTCAATCGTTGATATGTT+TGG | - | chr5_3:18959191-18959210 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATAAGCCATCT+TGG | + | chr5_3:18959437-18959456 | Msa0803670:intron | 40.0% |
| TGTGATAAGTCGATCCAAAC+AGG | + | chr5_3:18959563-18959582 | Msa0803670:intron | 40.0% | |
| AGGGAAGAACACCATATACA+TGG | - | chr5_3:18959774-18959793 | None:intergenic | 40.0% | |
| ATAGACAAACAGGAAGGACA+GGG | - | chr5_3:18959793-18959812 | None:intergenic | 40.0% | |
| AATAGACAAACAGGAAGGAC+AGG | - | chr5_3:18959794-18959813 | None:intergenic | 40.0% | |
| TGGGAGGAAAATAGACAAAC+AGG | - | chr5_3:18959803-18959822 | None:intergenic | 40.0% | |
| ! | TGTTTGTCTATTTTCCTCCC+AGG | + | chr5_3:18959802-18959821 | Msa0803670:intron | 40.0% |
| !! | CCATCGGCTTTGATAACAAT+TGG | - | chr5_3:18959927-18959946 | None:intergenic | 40.0% |
| CCAATTGTTATCAAAGCCGA+TGG | + | chr5_3:18959924-18959943 | Msa0803670:CDS | 40.0% | |
| TTCTTCAAGTGTCATGGCAA+CGG | - | chr5_3:18959973-18959992 | None:intergenic | 40.0% | |
| !! | ATGATGGTGAAGGGTGATTT+TGG | + | chr5_3:18960014-18960033 | Msa0803670:CDS | 40.0% |
| AATTCCACTAGAATCAGCTC+AGG | + | chr5_3:18960121-18960140 | Msa0803670:CDS | 40.0% | |
| TTCCTCGGTTAAAATAGGAG+CGG | - | chr5_3:18960210-18960229 | None:intergenic | 40.0% | |
| ! | GCTGACATTCCTTTTACTGT+TGG | - | chr5_3:18960266-18960285 | None:intergenic | 40.0% |
| GTAAAAGGAATGTCAGCAGA+AGG | + | chr5_3:18960269-18960288 | Msa0803670:CDS | 40.0% | |
| ATATATGCATGGAGCACAGT+CGG | + | chr5_3:18960532-18960551 | Msa0803670:intron | 40.0% | |
| CAAGCACCAAACAATCTCAT+TGG | + | chr5_3:18960807-18960826 | Msa0803670:intron | 40.0% | |
| ! | TTACACAGGTCTTGATGGTT+CGG | + | chr5_3:18960943-18960962 | Msa0803670:intron | 40.0% |
| !! | GTTGTGGTAATGGCAAGTAA+AGG | + | chr5_3:18961056-18961075 | Msa0803670:CDS | 40.0% |
| ATGGCAAGTAAAGGATATCC+GGG | + | chr5_3:18961065-18961084 | Msa0803670:CDS | 40.0% | |
| ATATCCGGGATCATATGAGA+AGG | + | chr5_3:18961079-18961098 | Msa0803670:CDS | 40.0% | |
| TATCCGGGATCATATGAGAA+GGG | + | chr5_3:18961080-18961099 | Msa0803670:CDS | 40.0% | |
| GGAAGATTTATTGCAACTGG+GGG | + | chr5_3:18961188-18961207 | Msa0803670:CDS | 40.0% | |
| AAAGGGAAATGATCTCGAAG+AGG | + | chr5_3:18961232-18961251 | Msa0803670:CDS | 40.0% | |
| AAGCTGTTGAGAATGTGAAC+TGG | + | chr5_3:18961273-18961292 | Msa0803670:CDS | 40.0% | |
| !! | CACATGTTGTTTCTGAGGAA+GGG | - | chr5_3:18961336-18961355 | None:intergenic | 40.0% |
| !! | ACACATGTTGTTTCTGAGGA+AGG | - | chr5_3:18961337-18961356 | None:intergenic | 40.0% |
| GAGCATCTCCAATATAAGTG+AGG | + | chr5_3:18961437-18961456 | Msa0803670:three_prime_UTR | 40.0% | |
| ! | CTAGGTGATCTTTTATGCCT+GGG | + | chr5_3:18961574-18961593 | Msa0803670:three_prime_UTR | 40.0% |
| GGGTCTTTCTGCTCTTTAAT+AGG | - | chr5_3:18961693-18961712 | None:intergenic | 40.0% | |
| GTGACTGCGCAAGATGAAAA+GGG | - | chr5_3:18958181-18958200 | None:intergenic | 45.0% | |
| AGTGACTGCGCAAGATGAAA+AGG | - | chr5_3:18958182-18958201 | None:intergenic | 45.0% | |
| GTGACTGCGCAAGATGAAAA+GGG | - | chr5_3:18958181-18958200 | None:intergenic | 45.0% | |
| AGTGACTGCGCAAGATGAAA+AGG | - | chr5_3:18958182-18958201 | None:intergenic | 45.0% | |
| GATGCTTCTTTCTGGGTTTG+AGG | - | chr5_3:18958263-18958282 | None:intergenic | 45.0% | |
| TCTTGCACCACCTTCAATGT+TGG | + | chr5_3:18958448-18958467 | Msa0803670:CDS | 45.0% | |
| AGTGGTTTCTGAACCCAAAG+GGG | - | chr5_3:18958519-18958538 | None:intergenic | 45.0% | |
| CAGAATACAGTATCGCAGGA+CGG | - | chr5_3:18958866-18958885 | None:intergenic | 45.0% | |
| AGCACAGAATACAGTATCGC+AGG | - | chr5_3:18958870-18958889 | None:intergenic | 45.0% | |
| GATACTGTATTCTGTGCTCC+TGG | + | chr5_3:18958872-18958891 | Msa0803670:CDS | 45.0% | |
| CTGCACCATCACAAACATCA+AGG | - | chr5_3:18958943-18958962 | None:intergenic | 45.0% | |
| !! | CAGCTGTAGAGTCATTTTGC+CGG | + | chr5_3:18958960-18958979 | Msa0803670:CDS | 45.0% |
| !! | GAGTCATTTTGCCGGAAATG+GGG | + | chr5_3:18958968-18958987 | Msa0803670:CDS | 45.0% |
| TGAAAGACCTGCAACAAGTG+GGG | - | chr5_3:18959023-18959042 | None:intergenic | 45.0% | |
| ! | AAGGCTGGAATTCCGACTTT+TGG | + | chr5_3:18959055-18959074 | Msa0803670:CDS | 45.0% |
| TCTGCAGATGGACCAAAAGT+CGG | - | chr5_3:18959070-18959089 | None:intergenic | 45.0% | |
| AGAAGACAGACCTTAGCAGT+TGG | - | chr5_3:18959154-18959173 | None:intergenic | 45.0% | |
| TATATTGCCTTGCTGCGGAT+GGG | - | chr5_3:18959887-18959906 | None:intergenic | 45.0% | |
| ATATATTGCCTTGCTGCGGA+TGG | - | chr5_3:18959888-18959907 | None:intergenic | 45.0% | |
| TGTTATCAAAGCCGATGGAC+TGG | + | chr5_3:18959929-18959948 | Msa0803670:CDS | 45.0% | |
| !!! | AAGGGTGATTTTGGTTCTGC+AGG | + | chr5_3:18960023-18960042 | Msa0803670:CDS | 45.0% |
| !! | GACCATAAGAGAGTTGGTGA+TGG | + | chr5_3:18960143-18960162 | Msa0803670:CDS | 45.0% |
| CACCATCACCAACTCTCTTA+TGG | - | chr5_3:18960148-18960167 | None:intergenic | 45.0% | |
| TCCTCGGTTAAAATAGGAGC+GGG | - | chr5_3:18960209-18960228 | None:intergenic | 45.0% | |
| GCAGAAGGTCGTAAGTTTGT+TGG | + | chr5_3:18960284-18960303 | Msa0803670:CDS | 45.0% | |
| AGAGTTGAGTGGTGTATCAC+TGG | + | chr5_3:18961010-18961029 | Msa0803670:CDS | 45.0% | |
| ACTTGCCATTACCACAACCA+TGG | - | chr5_3:18961054-18961073 | None:intergenic | 45.0% | |
| GTTCCCTTCTCATATGATCC+CGG | - | chr5_3:18961086-18961105 | None:intergenic | 45.0% | |
| CAACAAGCTCAGCTTCTTCA+AGG | - | chr5_3:18961121-18961140 | None:intergenic | 45.0% | |
| ! | AATCTGAAGCAGTTCCAGCA+TGG | - | chr5_3:18961163-18961182 | None:intergenic | 45.0% |
| GGAACTGCTTCAGATTCTGA+AGG | + | chr5_3:18961167-18961186 | Msa0803670:CDS | 45.0% | |
| TTGCTGTAACCCCAAGAACA+CGG | - | chr5_3:18961214-18961233 | None:intergenic | 45.0% | |
| TGTTCTTGGGGTTACAGCAA+AGG | + | chr5_3:18961214-18961233 | Msa0803670:CDS | 45.0% | |
| GTTCTTGGGGTTACAGCAAA+GGG | + | chr5_3:18961215-18961234 | Msa0803670:CDS | 45.0% | |
| TTGAGAATGTGAACTGGCCA+GGG | + | chr5_3:18961279-18961298 | Msa0803670:CDS | 45.0% | |
| GGATTCTATCGTCGGGATAT+TGG | + | chr5_3:18961302-18961321 | Msa0803670:CDS | 45.0% | |
| TCTATCGTCGGGATATTGGT+TGG | + | chr5_3:18961306-18961325 | Msa0803670:CDS | 45.0% | |
| CCAGGCATAAAAGATCACCT+AGG | - | chr5_3:18961576-18961595 | None:intergenic | 45.0% | |
| ! | CCTAGGTGATCTTTTATGCC+TGG | + | chr5_3:18961573-18961592 | Msa0803670:three_prime_UTR | 45.0% |
| ! | ATTTTGCCGGAAATGGGGAG+TGG | + | chr5_3:18958973-18958992 | Msa0803670:CDS | 50.0% |
| ! | TTTTGCCGGAAATGGGGAGT+GGG | + | chr5_3:18958974-18958993 | Msa0803670:CDS | 50.0% |
| ! | GACTTTTGGTCCATCTGCAG+AGG | + | chr5_3:18959069-18959088 | Msa0803670:CDS | 50.0% |
| TGAACCTTGTAGGGCCTGTT+TGG | - | chr5_3:18959580-18959599 | None:intergenic | 50.0% | |
| CACTATGGCAAAAACCTGGG+AGG | - | chr5_3:18959819-18959838 | None:intergenic | 50.0% | |
| ! | TTTTCCAGCAGCCAGTCCAT+CGG | - | chr5_3:18959943-18959962 | None:intergenic | 50.0% |
| !!! | GGTGATTTTGGTTCTGCAGG+TGG | + | chr5_3:18960026-18960045 | Msa0803670:CDS | 50.0% |
| ! | AGGTGGTCGTGTCATTGTTG+AGG | + | chr5_3:18960043-18960062 | Msa0803670:CDS | 50.0% |
| ! | TGGTCCTGAGCTGATTCTAG+TGG | - | chr5_3:18960128-18960147 | None:intergenic | 50.0% |
| GCTCAGGACCATAAGAGAGT+TGG | + | chr5_3:18960137-18960156 | Msa0803670:CDS | 50.0% | |
| !! | AGAGTTGGTGATGGTGACAC+AGG | + | chr5_3:18960152-18960171 | Msa0803670:CDS | 50.0% |
| !! | GAGTTGGTGATGGTGACACA+GGG | + | chr5_3:18960153-18960172 | Msa0803670:CDS | 50.0% |
| !!! | TCCCGCTCCTATTTTAACCG+AGG | + | chr5_3:18960205-18960224 | Msa0803670:CDS | 50.0% |
| ! | ATTTGGTGATCCAGAGTGCC+AGG | + | chr5_3:18960376-18960395 | Msa0803670:CDS | 50.0% |
| ACTTAACTGACCTGGCACTC+TGG | - | chr5_3:18960389-18960408 | None:intergenic | 50.0% | |
| !! | ACAGGTCTTGATGGTTCGGT+TGG | + | chr5_3:18960947-18960966 | Msa0803670:intron | 50.0% |
| ! | GGTTCGGTTGGAGTCTGATT+TGG | + | chr5_3:18960959-18960978 | Msa0803670:CDS | 50.0% |
| ! | AAGTTCTGCTTGCTGCTTGC+AGG | + | chr5_3:18960985-18961004 | Msa0803670:CDS | 50.0% |
| ! | AGTTCTGCTTGCTGCTTGCA+GGG | + | chr5_3:18960986-18961005 | Msa0803670:CDS | 50.0% |
| TGAGTGGTGTATCACTGGAC+TGG | + | chr5_3:18961015-18961034 | Msa0803670:CDS | 50.0% | |
| ATCGGCCATGGTTGTGGTAA+TGG | + | chr5_3:18961046-18961065 | Msa0803670:CDS | 50.0% | |
| GTTGAGAATGTGAACTGGCC+AGG | + | chr5_3:18961278-18961297 | Msa0803670:CDS | 50.0% | |
| TGAGAATGTGAACTGGCCAG+GGG | + | chr5_3:18961280-18961299 | Msa0803670:CDS | 50.0% | |
| ! | AGGGTTGGCATAGATAACCC+AGG | - | chr5_3:18961594-18961613 | None:intergenic | 50.0% |
| GTGCGTGTGAGCGATTGGAT+GGG | - | chr5_3:18958296-18958315 | None:intergenic | 55.0% | |
| TTCTGTGCTCCTGGCAATGC+AGG | + | chr5_3:18958881-18958900 | Msa0803670:CDS | 55.0% | |
| AATGCAGGAATCGCCAGCTC+AGG | + | chr5_3:18958896-18958915 | Msa0803670:CDS | 55.0% | |
| GCAAGTCGCATTTCCTGAGC+TGG | - | chr5_3:18958912-18958931 | None:intergenic | 55.0% | |
| CTAGTCCCACTCCCCATTTC+CGG | - | chr5_3:18958982-18959001 | None:intergenic | 55.0% | |
| !! | ATGGGGAGTGGGACTAGTTG+TGG | + | chr5_3:18958985-18959004 | Msa0803670:CDS | 55.0% |
| !! | GGAGTGGGACTAGTTGTGGT+GGG | + | chr5_3:18958989-18959008 | Msa0803670:CDS | 55.0% |
| CGATCCAAACAGGCCCTACA+AGG | + | chr5_3:18959573-18959592 | Msa0803670:intron | 55.0% | |
| TTACAGACCCATCCGCAGCA+AGG | + | chr5_3:18959877-18959896 | Msa0803670:CDS | 55.0% | |
| !! | GATGGACTGGCTGCTGGAAA+AGG | + | chr5_3:18959942-18959961 | Msa0803670:CDS | 55.0% |
| GGTGACACAGGGCCAAATAC+TGG | + | chr5_3:18960164-18960183 | Msa0803670:CDS | 55.0% | |
| GACACAGGGCCAAATACTGG+TGG | + | chr5_3:18960167-18960186 | Msa0803670:CDS | 55.0% | |
| AGGGCCAAATACTGGTGGCA+TGG | + | chr5_3:18960172-18960191 | Msa0803670:CDS | 55.0% | |
| GGGCCAAATACTGGTGGCAT+GGG | + | chr5_3:18960173-18960192 | Msa0803670:CDS | 55.0% | |
| GCACCCATGCCACCAGTATT+TGG | - | chr5_3:18960179-18960198 | None:intergenic | 55.0% | |
| ! | GTTCTGCTTGCTGCTTGCAG+GGG | + | chr5_3:18960987-18961006 | Msa0803670:CDS | 55.0% |
| !! | GTATCACTGGACTGGTCTCC+TGG | + | chr5_3:18961023-18961042 | Msa0803670:CDS | 55.0% |
| !! | ACTGGACTGGTCTCCTGGAT+CGG | + | chr5_3:18961028-18961047 | Msa0803670:CDS | 55.0% |
| GAGAATGTGAACTGGCCAGG+GGG | + | chr5_3:18961281-18961300 | Msa0803670:CDS | 55.0% | |
| CGTGCGTGTGAGCGATTGGA+TGG | - | chr5_3:18958297-18958316 | None:intergenic | 60.0% | |
| GGAACGTGCGTGTGAGCGAT+TGG | - | chr5_3:18958301-18958320 | None:intergenic | 60.0% | |
| CTGGCGATTCCTGCATTGCC+AGG | - | chr5_3:18958893-18958912 | None:intergenic | 60.0% | |
| !! | GGGAGTGGGACTAGTTGTGG+TGG | + | chr5_3:18958988-18959007 | Msa0803670:CDS | 60.0% |
| CCTGCAACAAGTGGGGCTTC+AGG | - | chr5_3:18959016-18959035 | None:intergenic | 60.0% | |
| ! | CCTGAAGCCCCACTTGTTGC+AGG | + | chr5_3:18959013-18959032 | Msa0803670:CDS | 60.0% |
| AGAGCAGCAGCCTCTGCAGA+TGG | - | chr5_3:18959082-18959101 | None:intergenic | 60.0% | |
| ! | GCAGAGGCTGCTGCTCTAGA+AGG | + | chr5_3:18959085-18959104 | Msa0803670:CDS | 60.0% |
| !! | AAAGCCGATGGACTGGCTGC+TGG | + | chr5_3:18959936-18959955 | Msa0803670:CDS | 60.0% |
| GCTTGCAGGGGAGAGTTGAG+TGG | + | chr5_3:18960999-18961018 | Msa0803670:CDS | 60.0% | |
| TCCTGGATCGGCCATGGTTG+TGG | + | chr5_3:18961040-18961059 | Msa0803670:CDS | 60.0% | |
| ACCACAACCATGGCCGATCC+AGG | - | chr5_3:18961044-18961063 | None:intergenic | 60.0% | |
| CAACTGGGGGCCGTGTTCTT+GGG | + | chr5_3:18961201-18961220 | Msa0803670:CDS | 60.0% | |
| AACTGGGGGCCGTGTTCTTG+GGG | + | chr5_3:18961202-18961221 | Msa0803670:CDS | 60.0% | |
| GGCCAGGGGGATTCTATCGT+CGG | + | chr5_3:18961294-18961313 | Msa0803670:CDS | 60.0% | |
| GCCAGGGGGATTCTATCGTC+GGG | + | chr5_3:18961295-18961314 | Msa0803670:CDS | 60.0% | |
| TCCCGACGATAGAATCCCCC+TGG | - | chr5_3:18961299-18961318 | None:intergenic | 60.0% | |
| CTGGTCTCCTGGATCGGCCA+TGG | + | chr5_3:18961034-18961053 | Msa0803670:CDS | 65.0% | |
| GCAACTGGGGGCCGTGTTCT+TGG | + | chr5_3:18961200-18961219 | Msa0803670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 18958028 | 18961787 | 18958028 | ID=Msa0803670;Name=Msa0803670 |
| chr5_3 | mRNA | 18958028 | 18961787 | 18958028 | ID=Msa0803670-mRNA-1;Parent=Msa0803670;Name=Msa0803670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=372|0.75|0.8|1|0.75|0.6|5|420|524 |
| chr5_3 | exon | 18958028 | 18958270 | 18958028 | ID=Msa0803670-mRNA-1:exon:7756;Parent=Msa0803670-mRNA-1 |
| chr5_3 | exon | 18958316 | 18958697 | 18958316 | ID=Msa0803670-mRNA-1:exon:7757;Parent=Msa0803670-mRNA-1 |
| chr5_3 | exon | 18958789 | 18959162 | 18958789 | ID=Msa0803670-mRNA-1:exon:7758;Parent=Msa0803670-mRNA-1 |
| chr5_3 | exon | 18959867 | 18960397 | 18959867 | ID=Msa0803670-mRNA-1:exon:7759;Parent=Msa0803670-mRNA-1 |
| chr5_3 | exon | 18960951 | 18961787 | 18960951 | ID=Msa0803670-mRNA-1:exon:7760;Parent=Msa0803670-mRNA-1 |
| chr5_3 | five_prime_UTR | 18958028 | 18958270 | 18958028 | ID=Msa0803670-mRNA-1:five_prime_utr;Parent=Msa0803670-mRNA-1 |
| chr5_3 | five_prime_UTR | 18958316 | 18958444 | 18958316 | ID=Msa0803670-mRNA-1:five_prime_utr;Parent=Msa0803670-mRNA-1 |
| chr5_3 | CDS | 18958445 | 18958697 | 18958445 | ID=Msa0803670-mRNA-1:cds;Parent=Msa0803670-mRNA-1 |
| chr5_3 | CDS | 18958789 | 18959162 | 18958789 | ID=Msa0803670-mRNA-1:cds;Parent=Msa0803670-mRNA-1 |
| chr5_3 | CDS | 18959867 | 18960397 | 18959867 | ID=Msa0803670-mRNA-1:cds;Parent=Msa0803670-mRNA-1 |
| chr5_3 | CDS | 18960951 | 18961367 | 18960951 | ID=Msa0803670-mRNA-1:cds;Parent=Msa0803670-mRNA-1 |
| chr5_3 | three_prime_UTR | 18961368 | 18961787 | 18961368 | ID=Msa0803670-mRNA-1:three_prime_utr;Parent=Msa0803670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
