Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723830 | AES95423.2 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723830 | sp|P52420|PUR2_ARATH | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723830 | G7K3Z1 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044000 | Msa0723830 | 0.807732 | 4.378447e-50 | -8.615850e-47 |
| Msa0061080 | Msa0723830 | 0.824615 | 7.334567e-54 | -8.615850e-47 |
| Msa0101700 | Msa0723830 | 0.811573 | 6.544389e-51 | -8.615850e-47 |
| Msa0610430 | Msa0723830 | 0.814703 | 1.345990e-51 | -8.615850e-47 |
| Msa0615710 | Msa0723830 | 0.848217 | 7.056161e-60 | -8.615850e-47 |
| Msa0643350 | Msa0723830 | 0.804179 | 2.445577e-49 | -8.615850e-47 |
| Msa0663920 | Msa0723830 | 0.815546 | 8.748128e-52 | -8.615850e-47 |
| Msa0689260 | Msa0723830 | 0.808175 | 3.523737e-50 | -8.615850e-47 |
| Msa0692830 | Msa0723830 | 0.809053 | 2.288075e-50 | -8.615850e-47 |
| Msa0692950 | Msa0723830 | 0.823943 | 1.054697e-53 | -8.615850e-47 |
| Msa0711780 | Msa0723830 | 0.808167 | 3.536921e-50 | -8.615850e-47 |
| Msa0715700 | Msa0723830 | 0.815461 | 9.137053e-52 | -8.615850e-47 |
| Msa0723820 | Msa0723830 | 0.966191 | 1.363692e-125 | -8.615850e-47 |
| Msa0723830 | Msa0743720 | 0.810356 | 1.200409e-50 | -8.615850e-47 |
| Msa0723830 | Msa0764270 | 0.811129 | 8.169725e-51 | -8.615850e-47 |
| Msa0723830 | Msa0765910 | 0.811344 | 7.339299e-51 | -8.615850e-47 |
| Msa0723830 | Msa0769980 | 0.804914 | 1.718489e-49 | -8.615850e-47 |
| Msa0723830 | Msa0803670 | 0.992478 | 1.559617e-193 | -8.615850e-47 |
| Msa0723830 | Msa0808080 | 0.836913 | 7.079138e-57 | -8.615850e-47 |
| Msa0723830 | Msa0810710 | 0.844086 | 9.395770e-59 | -8.615850e-47 |
| Msa0723830 | Msa0849030 | 0.838673 | 2.500115e-57 | -8.615850e-47 |
| Msa0723830 | Msa0866550 | 0.804927 | 1.708036e-49 | -8.615850e-47 |
| Msa0723830 | Msa0938220 | 0.810699 | 1.012377e-50 | -8.615850e-47 |
| Msa0723830 | Msa0999970 | 0.802512 | 5.417758e-49 | -8.615850e-47 |
| Msa0723830 | Msa1003620 | 0.817216 | 3.699235e-52 | -8.615850e-47 |
| Msa0723830 | Msa1014540 | 0.804191 | 2.431370e-49 | -8.615850e-47 |
| Msa0723830 | Msa1030970 | 0.811041 | 8.537006e-51 | -8.615850e-47 |
| Msa0723830 | Msa1039800 | 0.800994 | 1.109903e-48 | -8.615850e-47 |
| Msa0723830 | Msa1046460 | 0.805084 | 1.583744e-49 | -8.615850e-47 |
| Msa0723830 | Msa1051200 | 0.815233 | 1.026861e-51 | -8.615850e-47 |
| Msa0723830 | Msa1100050 | 0.815027 | 1.140586e-51 | -8.615850e-47 |
| Msa0723830 | Msa1106700 | 0.803638 | 3.168292e-49 | -8.615850e-47 |
| Msa0723830 | Msa1124960 | 0.809587 | 1.757916e-50 | -8.615850e-47 |
| Msa0723830 | Msa1137700 | 0.804750 | 1.859890e-49 | -8.615850e-47 |
| Msa0723830 | Msa1138880 | 0.814963 | 1.178879e-51 | -8.615850e-47 |
| Msa0723830 | Msa1162270 | 0.802861 | 4.588682e-49 | -8.615850e-47 |
| Msa0723830 | Msa1167340 | 0.814481 | 1.507117e-51 | -8.615850e-47 |
| Msa0723830 | Msa1174040 | 0.823792 | 1.144508e-53 | -8.615850e-47 |
| Msa0723830 | Msa1174910 | 0.800378 | 1.482270e-48 | -8.615850e-47 |
| Msa0723830 | Msa1181250 | 0.814885 | 1.226345e-51 | -8.615850e-47 |
| Msa0723830 | Msa1181330 | 0.812303 | 4.537188e-51 | -8.615850e-47 |
| Msa0723830 | Msa1236430 | 0.804635 | 1.965586e-49 | -8.615850e-47 |
| Msa0723830 | Msa1253020 | 0.815594 | 8.534910e-52 | -8.615850e-47 |
| Msa0723830 | Msa1277660 | 0.819922 | 9.002899e-53 | -8.615850e-47 |
| Msa0723830 | Msa1284680 | 0.809347 | 1.979027e-50 | -8.615850e-47 |
| Msa0723830 | Msa1287460 | 0.813486 | 2.498177e-51 | -8.615850e-47 |
| Msa0723830 | Msa1358250 | 0.804553 | 2.044004e-49 | -8.615850e-47 |
| Msa0723830 | Msa1372760 | 0.807222 | 5.616432e-50 | -8.615850e-47 |
| Msa0723830 | Msa1392780 | 0.806102 | 9.682867e-50 | -8.615850e-47 |
| Msa0723830 | Msa1427230 | 0.812928 | 3.311851e-51 | -8.615850e-47 |
| Msa0723830 | Msa1454480 | 0.811791 | 5.865913e-51 | -8.615850e-47 |
| Msa0723830 | Msa1460830 | 0.809505 | 1.830789e-50 | -8.615850e-47 |
| Msa0723830 | Msa1466540 | 0.808773 | 2.627206e-50 | -8.615850e-47 |
| Msa0127050 | Msa0723830 | 0.803711 | 3.060459e-49 | -8.615850e-47 |
| Msa0160550 | Msa0723830 | 0.812658 | 3.794095e-51 | -8.615850e-47 |
| Msa0169310 | Msa0723830 | 0.802448 | 5.582618e-49 | -8.615850e-47 |
| Msa0180500 | Msa0723830 | 0.809162 | 2.168046e-50 | -8.615850e-47 |
| Msa0187120 | Msa0723830 | 0.801716 | 7.897978e-49 | -8.615850e-47 |
| Msa0205510 | Msa0723830 | 0.808244 | 3.406028e-50 | -8.615850e-47 |
| Msa0402790 | Msa0723830 | 0.805069 | 1.594915e-49 | -8.615850e-47 |
| Msa0407930 | Msa0723830 | 0.816200 | 6.252329e-52 | -8.615850e-47 |
| Msa0467380 | Msa0723830 | 0.815797 | 7.690459e-52 | -8.615850e-47 |
| Msa0262050 | Msa0723830 | 0.804693 | 1.911302e-49 | -8.615850e-47 |
| Msa0299870 | Msa0723830 | 0.800309 | 1.531367e-48 | -8.615850e-47 |
| Msa0339620 | Msa0723830 | 0.800398 | 1.468765e-48 | -8.615850e-47 |
| Msa0507440 | Msa0723830 | 0.819624 | 1.053350e-52 | -8.615850e-47 |
| Msa0512750 | Msa0723830 | 0.810381 | 1.185630e-50 | -8.615850e-47 |
| Msa0523940 | Msa0723830 | 0.816810 | 4.563501e-52 | -8.615850e-47 |
| Msa0545700 | Msa0723830 | 0.805653 | 1.203028e-49 | -8.615850e-47 |
| Msa0578860 | Msa0723830 | 0.803893 | 2.805035e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723830 | MtrunA17_Chr5g0407981 | 90.458 | 524 | 43 | 2 | 1 | 524 | 1 | 517 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723830 | AT1G09830.1 | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
Find 159 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATGGGCAGAGGAATTT+TGG | 0.171331 | 5_1:-21836006 | None:intergenic |
| AAGTTCTGCTTGCTGCTTGC+AGG | 0.217650 | 5_1:+21838445 | Msa0723830:CDS |
| TAAGGTTCTTGAATGGAAAA+TGG | 0.236765 | 5_1:-21835779 | None:intergenic |
| ATTAAAAGATTCATCAACTA+TGG | 0.265214 | 5_1:-21838925 | None:intergenic |
| ATGATGGTGAAGGGTGATTT+TGG | 0.268370 | 5_1:+21837474 | Msa0723830:CDS |
| ATGAATACGTGAACTGCTTA+TGG | 0.270074 | 5_1:-21835697 | None:intergenic |
| ATTATCATGCCAACAGTAAA+AGG | 0.276043 | 5_1:+21837714 | Msa0723830:CDS |
| CTAGTCCCACTCCCCATTTC+CGG | 0.278883 | 5_1:-21836439 | None:intergenic |
| GCACCCATGCCACCAGTATT+TGG | 0.280418 | 5_1:-21837636 | None:intergenic |
| TGGATTACCCTCACTTATAT+TGG | 0.283268 | 5_1:-21838905 | None:intergenic |
| TGAAGTTCCTCGGTTAAAAT+AGG | 0.288190 | 5_1:-21837672 | None:intergenic |
| ATCAAATTTCTAACCCCTTT+GGG | 0.289790 | 5_1:+21835963 | Msa0723830:CDS |
| CCTGAAGCCCCACTTGTTGC+AGG | 0.303334 | 5_1:+21836473 | Msa0723830:CDS |
| AGGATGGTTGTTCTGGTTAT+TGG | 0.303663 | 5_1:+21836254 | Msa0723830:CDS |
| GTATCACTGGACTGGTCTCC+TGG | 0.325942 | 5_1:+21838483 | Msa0723830:CDS |
| GAAGGAAGATTTATTGCAAC+TGG | 0.331396 | 5_1:+21838645 | Msa0723830:CDS |
| TAATAAATAGAAAGCGAAAA+AGG | 0.331948 | 5_1:-21835804 | None:intergenic |
| CATCAAATTTCTAACCCCTT+TGG | 0.331950 | 5_1:+21835962 | Msa0723830:CDS |
| CAAAGGGGTTAGAAATTTGA+TGG | 0.343767 | 5_1:-21835961 | None:intergenic |
| AGAAGAAAGGATGGTTGTTC+TGG | 0.350493 | 5_1:+21836247 | Msa0723830:intron |
| AACAATCAATAACAGTGAAT+TGG | 0.351831 | 5_1:+21838862 | Msa0723830:three_prime_UTR |
| GCATGGAATATCTTGATATC+TGG | 0.352212 | 5_1:-21838603 | None:intergenic |
| GGGTCTTTCTGCTCTTTAAT+AGG | 0.355953 | 5_1:-21839150 | None:intergenic |
| CACCATCACCAACTCTCTTA+TGG | 0.363196 | 5_1:-21837605 | None:intergenic |
| ATGAGTGAAGCTTAAATTCA+AGG | 0.372123 | 5_1:-21836035 | None:intergenic |
| GGATTCTATCGTCGGGATAT+TGG | 0.375330 | 5_1:+21838762 | Msa0723830:CDS |
| AAGGCTGGAATTCCGACTTT+TGG | 0.376671 | 5_1:+21836515 | Msa0723830:CDS |
| GCAGAGGCTGCTGCTCTAGA+AGG | 0.395754 | 5_1:+21836545 | Msa0723830:CDS |
| CCTGCAACAAGTGGGGCTTC+AGG | 0.395959 | 5_1:-21836473 | None:intergenic |
| CAACAAGCTCAGCTTCTTCA+AGG | 0.401913 | 5_1:-21838578 | None:intergenic |
| GATGCTTCTTTCTGGGTTTG+AGG | 0.401959 | 5_1:-21835720 | None:intergenic |
| TGAATACGTGAACTGCTTAT+GGG | 0.404091 | 5_1:-21835696 | None:intergenic |
| AGTTCTGCTTGCTGCTTGCA+GGG | 0.410296 | 5_1:+21838446 | Msa0723830:CDS |
| CCATCGGCTTTGATAACAAT+TGG | 0.410397 | 5_1:-21837384 | None:intergenic |
| TCTTTCAAATTATTTAGTTA+AGG | 0.411140 | 5_1:+21836496 | Msa0723830:CDS |
| TCAAATTATTTAGTTAAGGC+TGG | 0.411335 | 5_1:+21836500 | Msa0723830:CDS |
| CTGGCGATTCCTGCATTGCC+AGG | 0.411607 | 5_1:-21836350 | None:intergenic |
| GTGCATATTCCTAAGAAGAA+AGG | 0.415827 | 5_1:+21836234 | Msa0723830:intron |
| ATTGAGTATAATGTGCGATT+TGG | 0.421542 | 5_1:+21837819 | Msa0723830:CDS |
| TCCTGGATCGGCCATGGTTG+TGG | 0.425274 | 5_1:+21838500 | Msa0723830:CDS |
| CAAAACATTTGAAAACACTT+TGG | 0.426128 | 5_1:-21836081 | None:intergenic |
| AATGGCAAGTAAAGGATATC+CGG | 0.429568 | 5_1:+21838524 | Msa0723830:CDS |
| GGTTCGGTTGGAGTCTGATT+TGG | 0.434602 | 5_1:+21838419 | Msa0723830:CDS |
| TTACACAGGTCTTGATGGTT+CGG | 0.436632 | 5_1:+21838403 | Msa0723830:intron |
| AGTGACTGCGCAAGATGAAA+AGG | 0.439796 | 5_1:-21835639 | None:intergenic |
| AGTGACTGCGCAAGATGAAA+AGG | 0.439796 | 5_1:-21835668 | None:intergenic |
| GATGGACTGGCTGCTGGAAA+AGG | 0.441425 | 5_1:+21837402 | Msa0723830:CDS |
| GCAGAAGGTCGTAAGTTTGT+TGG | 0.452921 | 5_1:+21837744 | Msa0723830:CDS |
| TTCTGTGCTCCTGGCAATGC+AGG | 0.456673 | 5_1:+21836341 | Msa0723830:CDS |
| CTCATATTGTTACTTCTGTA+CGG | 0.457872 | 5_1:-21839171 | None:intergenic |
| ATTGTGACAAGGTCAGTAAT+AGG | 0.458217 | 5_1:+21838831 | Msa0723830:three_prime_UTR |
| TACTATAGATTGAAGTTCCT+CGG | 0.460702 | 5_1:-21837682 | None:intergenic |
| AAAGGATTAAGGTTCTTGAA+TGG | 0.464719 | 5_1:-21835786 | None:intergenic |
| AAAGCCGATGGACTGGCTGC+TGG | 0.467487 | 5_1:+21837396 | Msa0723830:CDS |
| CACATGTTGTTTCTGAGGAA+GGG | 0.474074 | 5_1:-21838793 | None:intergenic |
| ATCGGCCATGGTTGTGGTAA+TGG | 0.478772 | 5_1:+21838506 | Msa0723830:CDS |
| GTTCTGGTTATTGGTGAAGA+AGG | 0.480331 | 5_1:+21836263 | Msa0723830:CDS |
| ACTTATATTGGAGATGCTCT+AGG | 0.482634 | 5_1:-21838893 | None:intergenic |
| ACAGGTCTTGATGGTTCGGT+TGG | 0.484956 | 5_1:+21838407 | Msa0723830:intron |
| ATTGTTGAGGAATTTCTAGA+AGG | 0.486684 | 5_1:+21837516 | Msa0723830:CDS |
| AAGTGGTTTCTGAACCCAAA+GGG | 0.488153 | 5_1:-21835977 | None:intergenic |
| AGAGTTGAGTGGTGTATCAC+TGG | 0.488231 | 5_1:+21838470 | Msa0723830:CDS |
| CTGGTCTCCTGGATCGGCCA+TGG | 0.489094 | 5_1:+21838494 | Msa0723830:CDS |
| ACATTATACTCAATTAACTT+AGG | 0.490907 | 5_1:-21837810 | None:intergenic |
| ATGGGGAGTGGGACTAGTTG+TGG | 0.494753 | 5_1:+21836445 | Msa0723830:CDS |
| ACACATGTTGTTTCTGAGGA+AGG | 0.495014 | 5_1:-21838794 | None:intergenic |
| TCTTGCACCACCTTCAATGT+TGG | 0.500411 | 5_1:+21835908 | Msa0723830:CDS |
| TGTTATCAAAGCCGATGGAC+TGG | 0.502419 | 5_1:+21837389 | Msa0723830:CDS |
| GTTCTTGGGGTTACAGCAAA+GGG | 0.503275 | 5_1:+21838675 | Msa0723830:CDS |
| GTTGAGAATGTGAACTGGCC+AGG | 0.508310 | 5_1:+21838738 | Msa0723830:CDS |
| ACCACAACCATGGCCGATCC+AGG | 0.508477 | 5_1:-21838501 | None:intergenic |
| AGGCAATATATTCAAGAAGA+AGG | 0.509444 | 5_1:+21837357 | Msa0723830:CDS |
| GAAAGAAGTTCCAACATTGA+AGG | 0.509915 | 5_1:-21835918 | None:intergenic |
| GGTGACACAGGGCCAAATAC+TGG | 0.517092 | 5_1:+21837624 | Msa0723830:CDS |
| AATGCAGGAATCGCCAGCTC+AGG | 0.518585 | 5_1:+21836356 | Msa0723830:CDS |
| ATTTGGTGATCCAGAGTGCC+AGG | 0.519355 | 5_1:+21837836 | Msa0723830:CDS |
| TCATATTGTTACTTCTGTAC+GGG | 0.522406 | 5_1:-21839170 | None:intergenic |
| TATACGGATTAAGTAATTGA+CGG | 0.522416 | 5_1:+21839212 | Msa0723830:three_prime_UTR |
| GCAAGTCGCATTTCCTGAGC+TGG | 0.523866 | 5_1:-21836369 | None:intergenic |
| ATATATTGCCTTGCTGCGGA+TGG | 0.524592 | 5_1:-21837345 | None:intergenic |
| AGTTCAATGTCAACTTCTCT+AGG | 0.526075 | 5_1:-21839093 | None:intergenic |
| GTTCTGCTTGCTGCTTGCAG+GGG | 0.528528 | 5_1:+21838447 | Msa0723830:CDS |
| AGGGCCAAATACTGGTGGCA+TGG | 0.531074 | 5_1:+21837632 | Msa0723830:CDS |
| ACTTAACTGACCTGGCACTC+TGG | 0.532548 | 5_1:-21837846 | None:intergenic |
| TCCTCGGTTAAAATAGGAGC+GGG | 0.532872 | 5_1:-21837666 | None:intergenic |
| ATATGCTTCTTCAAGTGTCA+TGG | 0.538051 | 5_1:-21837436 | None:intergenic |
| TCTATCGTCGGGATATTGGT+TGG | 0.538281 | 5_1:+21838766 | Msa0723830:CDS |
| TATATTGCCTTGCTGCGGAT+GGG | 0.542430 | 5_1:-21837344 | None:intergenic |
| GTGACTGCGCAAGATGAAAA+GGG | 0.542547 | 5_1:-21835638 | None:intergenic |
| GTGACTGCGCAAGATGAAAA+GGG | 0.542547 | 5_1:-21835667 | None:intergenic |
| GGAACTTCAATCTATAGTAA+TGG | 0.543780 | 5_1:+21837686 | Msa0723830:CDS |
| AGAGTTGGTGATGGTGACAC+AGG | 0.544390 | 5_1:+21837612 | Msa0723830:CDS |
| TGTTCTTGGGGTTACAGCAA+AGG | 0.545679 | 5_1:+21838674 | Msa0723830:CDS |
| GGGCCAAATACTGGTGGCAT+GGG | 0.551071 | 5_1:+21837633 | Msa0723830:CDS |
| AGCACAGAATACAGTATCGC+AGG | 0.554069 | 5_1:-21836327 | None:intergenic |
| TTGAGAATGTGAACTGGCCA+GGG | 0.555410 | 5_1:+21838739 | Msa0723830:CDS |
| GAAATTTGATGGTTAATGCA+TGG | 0.555985 | 5_1:-21835950 | None:intergenic |
| TTCTTCAAGTGTCATGGCAA+CGG | 0.559738 | 5_1:-21837430 | None:intergenic |
| AGAGCAGCAGCCTCTGCAGA+TGG | 0.563220 | 5_1:-21836539 | None:intergenic |
| TTTATTAGAAGATGAAGTAG+CGG | 0.565641 | 5_1:-21835854 | None:intergenic |
| TGGTCCTGAGCTGATTCTAG+TGG | 0.566864 | 5_1:-21837585 | None:intergenic |
| TTTGACACATGTTGTTTCTG+AGG | 0.567828 | 5_1:-21838798 | None:intergenic |
| AAGGAAGATTTATTGCAACT+GGG | 0.569664 | 5_1:+21838646 | Msa0723830:CDS |
| ATGGCAAGTAAAGGATATCC+GGG | 0.575678 | 5_1:+21838525 | Msa0723830:CDS |
| TCAGACCTTGATGTTTGTGA+TGG | 0.577116 | 5_1:+21836395 | Msa0723830:CDS |
| GATACTGTATTCTGTGCTCC+TGG | 0.577249 | 5_1:+21836332 | Msa0723830:CDS |
| GTTCCCTTCTCATATGATCC+CGG | 0.579563 | 5_1:-21838543 | None:intergenic |
| ACTGGACTGGTCTCCTGGAT+CGG | 0.579914 | 5_1:+21838488 | Msa0723830:CDS |
| TCAGAAACAACATGTGTCAA+AGG | 0.580030 | 5_1:+21838800 | Msa0723830:CDS |
| GTATGATATTCCAACTGCTA+AGG | 0.581971 | 5_1:+21836601 | Msa0723830:CDS |
| GTTGTGGTAATGGCAAGTAA+AGG | 0.584088 | 5_1:+21838516 | Msa0723830:CDS |
| GATATCAAGATATTCCATGC+TGG | 0.584948 | 5_1:+21838606 | Msa0723830:CDS |
| CACTTTGCTATGCGTTACAA+CGG | 0.589760 | 5_1:+21836297 | Msa0723830:CDS |
| AGAAGACAGACCTTAGCAGT+TGG | 0.591379 | 5_1:-21836611 | None:intergenic |
| GCTCAGGACCATAAGAGAGT+TGG | 0.593929 | 5_1:+21837597 | Msa0723830:CDS |
| AGCATCTCCAATATAAGTGA+GGG | 0.596396 | 5_1:+21838898 | Msa0723830:three_prime_UTR |
| TTGAAAGACCTGCAACAAGT+GGG | 0.599268 | 5_1:-21836481 | None:intergenic |
| TTTGAAAGACCTGCAACAAG+TGG | 0.600759 | 5_1:-21836482 | None:intergenic |
| AAGCTGTTGAGAATGTGAAC+TGG | 0.600765 | 5_1:+21838733 | Msa0723830:CDS |
| CCAATTGTTATCAAAGCCGA+TGG | 0.603526 | 5_1:+21837384 | Msa0723830:CDS |
| GGAACTGCTTCAGATTCTGA+AGG | 0.606903 | 5_1:+21838627 | Msa0723830:CDS |
| GGAAGATTTATTGCAACTGG+GGG | 0.611220 | 5_1:+21838648 | Msa0723830:CDS |
| ACTTGCCATTACCACAACCA+TGG | 0.611693 | 5_1:-21838511 | None:intergenic |
| TGAGTGGTGTATCACTGGAC+TGG | 0.613928 | 5_1:+21838475 | Msa0723830:CDS |
| ATATCCGGGATCATATGAGA+AGG | 0.614098 | 5_1:+21838539 | Msa0723830:CDS |
| AATTCCACTAGAATCAGCTC+AGG | 0.614376 | 5_1:+21837581 | Msa0723830:CDS |
| CTGCACCATCACAAACATCA+AGG | 0.618468 | 5_1:-21836400 | None:intergenic |
| GTAAAAGGAATGTCAGCAGA+AGG | 0.618962 | 5_1:+21837729 | Msa0723830:CDS |
| AATCTGAAGCAGTTCCAGCA+TGG | 0.624986 | 5_1:-21838620 | None:intergenic |
| TGAAAGACCTGCAACAAGTG+GGG | 0.625237 | 5_1:-21836480 | None:intergenic |
| GGAGTGGGACTAGTTGTGGT+GGG | 0.626311 | 5_1:+21836449 | Msa0723830:CDS |
| GGGAGTGGGACTAGTTGTGG+TGG | 0.628470 | 5_1:+21836448 | Msa0723830:CDS |
| AGGAAGATTTATTGCAACTG+GGG | 0.628668 | 5_1:+21838647 | Msa0723830:CDS |
| TTGAATATATTGCCTTGCTG+CGG | 0.629155 | 5_1:-21837349 | None:intergenic |
| TGAAGCAGTTGATTCAATGA+TGG | 0.629647 | 5_1:+21837458 | Msa0723830:CDS |
| TTGCTGTAACCCCAAGAACA+CGG | 0.631724 | 5_1:-21838671 | None:intergenic |
| GAGCATCTCCAATATAAGTG+AGG | 0.634649 | 5_1:+21838897 | Msa0723830:three_prime_UTR |
| GCTTGCAGGGGAGAGTTGAG+TGG | 0.637437 | 5_1:+21838459 | Msa0723830:CDS |
| TATCCGGGATCATATGAGAA+GGG | 0.637947 | 5_1:+21838540 | Msa0723830:CDS |
| TCTGCAGATGGACCAAAAGT+CGG | 0.638443 | 5_1:-21836527 | None:intergenic |
| AGTTGATTCAATGATGGTGA+AGG | 0.638741 | 5_1:+21837464 | Msa0723830:CDS |
| GAGTTGGTGATGGTGACACA+GGG | 0.642541 | 5_1:+21837613 | Msa0723830:CDS |
| AGAAGTTCCAACATTGAAGG+TGG | 0.645826 | 5_1:-21835915 | None:intergenic |
| GACCATAAGAGAGTTGGTGA+TGG | 0.648658 | 5_1:+21837603 | Msa0723830:CDS |
| AGGTGGTCGTGTCATTGTTG+AGG | 0.653092 | 5_1:+21837503 | Msa0723830:CDS |
| AGTGGTTTCTGAACCCAAAG+GGG | 0.667916 | 5_1:-21835976 | None:intergenic |
| ATATTCCTAAGAAGAAAGGA+TGG | 0.668291 | 5_1:+21836238 | Msa0723830:intron |
| TTCCTCGGTTAAAATAGGAG+CGG | 0.674048 | 5_1:-21837667 | None:intergenic |
| GTTGATTCAATGATGGTGAA+GGG | 0.681410 | 5_1:+21837465 | Msa0723830:CDS |
| AGGTGTAAACTATTGTGACA+AGG | 0.681822 | 5_1:+21838820 | Msa0723830:exon |
| CAGAATACAGTATCGCAGGA+CGG | 0.684316 | 5_1:-21836323 | None:intergenic |
| AAAGGGAAATGATCTCGAAG+AGG | 0.685275 | 5_1:+21838692 | Msa0723830:CDS |
| GACACAGGGCCAAATACTGG+TGG | 0.686532 | 5_1:+21837627 | Msa0723830:CDS |
| AAAGTGGTTTCTGAACCCAA+AGG | 0.686607 | 5_1:-21835978 | None:intergenic |
| TTACAGACCCATCCGCAGCA+AGG | 0.690175 | 5_1:+21837337 | Msa0723830:CDS |
| AGGGTTGGCATAGATAACCC+AGG | 0.694290 | 5_1:-21839051 | None:intergenic |
| TGAGAATGTGAACTGGCCAG+GGG | 0.720727 | 5_1:+21838740 | Msa0723830:CDS |
| CCAGGCATAAAAGATCACCT+AGG | 0.727326 | 5_1:-21839033 | None:intergenic |
| GAGAATGTGAACTGGCCAGG+GGG | 0.755542 | 5_1:+21838741 | Msa0723830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTTTTCATATTATA+CGG | + | chr5_1:21839196-21839215 | Msa0723830:three_prime_UTR | 10.0% |
| !!! | ATTCAAGGTTTTTAATAAAT+GGG | - | chr5_1:21836023-21836042 | None:intergenic | 15.0% |
| !!! | AATTCAAGGTTTTTAATAAA+TGG | - | chr5_1:21836024-21836043 | None:intergenic | 15.0% |
| !! | TCTTTCAAATTATTTAGTTA+AGG | + | chr5_1:21836496-21836515 | Msa0723830:CDS | 15.0% |
| !!! | TCTTAATATTTTTATTAGTC+AGG | + | chr5_1:21837133-21837152 | Msa0723830:intron | 15.0% |
| !!! | ACATTTTTAAAAGAACAATA+GGG | - | chr5_1:21838066-21838085 | None:intergenic | 15.0% |
| !!! | AACATTTTTAAAAGAACAAT+AGG | - | chr5_1:21838067-21838086 | None:intergenic | 15.0% |
| !!! | TTGGTTTTATTAAAAACAAA+AGG | + | chr5_1:21838286-21838305 | Msa0723830:intron | 15.0% |
| !!! | TGGTTTTATTAAAAACAAAA+GGG | + | chr5_1:21838287-21838306 | Msa0723830:intron | 15.0% |
| !!! | TATCTTTTTGCTTTTTAATA+GGG | - | chr5_1:21839073-21839092 | None:intergenic | 15.0% |
| !!! | GTACATTTTATTTCGAATTT+CGG | + | chr5_1:21835495-21835514 | Msa0723830:five_prime_UTR | 20.0% |
| !!! | ACATTTTAAAATGAATGAGT+GGG | - | chr5_1:21835525-21835544 | None:intergenic | 20.0% |
| !! | TAATAAATAGAAAGCGAAAA+AGG | - | chr5_1:21835807-21835826 | None:intergenic | 20.0% |
| !! | ATATCATTCCAATAAAACAA+GGG | - | chr5_1:21836671-21836690 | None:intergenic | 20.0% |
| !! | AATATCATTCCAATAAAACA+AGG | - | chr5_1:21836672-21836691 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTAGTCAGGT+TGG | + | chr5_1:21837137-21837156 | Msa0723830:intron | 20.0% |
| !! | ACATTATACTCAATTAACTT+AGG | - | chr5_1:21837813-21837832 | None:intergenic | 20.0% |
| !!! | ACAATGTATTTCAATTTTCA+CGG | - | chr5_1:21837912-21837931 | None:intergenic | 20.0% |
| !! | ATATAGTTATCATATATGCA+TGG | + | chr5_1:21837981-21838000 | Msa0723830:intron | 20.0% |
| !!! | GGTTTTATTAAAAACAAAAG+GGG | + | chr5_1:21838288-21838307 | Msa0723830:intron | 20.0% |
| !! | ATTAAAAGATTCATCAACTA+TGG | - | chr5_1:21838928-21838947 | None:intergenic | 20.0% |
| !!! | TTTTGTATAACAGAATTGAT+AGG | + | chr5_1:21838953-21838972 | Msa0723830:three_prime_UTR | 20.0% |
| !!! | GTATCTTTTTGCTTTTTAAT+AGG | - | chr5_1:21839074-21839093 | None:intergenic | 20.0% |
| !!! | CATTTTAAAATGAATGAGTG+GGG | - | chr5_1:21835524-21835543 | None:intergenic | 25.0% |
| !!! | CACATTTTAAAATGAATGAG+TGG | - | chr5_1:21835526-21835545 | None:intergenic | 25.0% |
| ! | TTTATTAGAAGATGAAGTAG+CGG | - | chr5_1:21835857-21835876 | None:intergenic | 25.0% |
| !!! | AAACTCTGTAATTTTGAAAC+AGG | + | chr5_1:21835875-21835894 | Msa0723830:five_prime_UTR | 25.0% |
| ! | CAAAACATTTGAAAACACTT+TGG | - | chr5_1:21836084-21836103 | None:intergenic | 25.0% |
| ! | TCAAATTATTTAGTTAAGGC+TGG | + | chr5_1:21836500-21836519 | Msa0723830:CDS | 25.0% |
| !! | CTAGTACTGAACAAAATTAA+GGG | - | chr5_1:21836749-21836768 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATACAAACA+TGG | - | chr5_1:21836774-21836793 | None:intergenic | 25.0% |
| ! | TATATCGTAAGAGTTTATCA+TGG | + | chr5_1:21836803-21836822 | Msa0723830:intron | 25.0% |
| !!! | AGTTTTAATTGAACCTTGTA+GGG | - | chr5_1:21837049-21837068 | None:intergenic | 25.0% |
| ! | GGAATAAAGAGAACAAATAA+GGG | - | chr5_1:21837213-21837232 | None:intergenic | 25.0% |
| ! | TGGAATAAAGAGAACAAATA+AGG | - | chr5_1:21837214-21837233 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTCCATGTATA+TGG | + | chr5_1:21837220-21837239 | Msa0723830:intron | 25.0% |
| ! | TCCATTATAAGTAAACACTA+TGG | - | chr5_1:21837294-21837313 | None:intergenic | 25.0% |
| !! | GTTAAAGTCTAGAACTTATA+AGG | + | chr5_1:21837930-21837949 | Msa0723830:intron | 25.0% |
| !!! | TTGTTCACTTTTCTTTGTTT+TGG | + | chr5_1:21838119-21838138 | Msa0723830:intron | 25.0% |
| ! | ATAAAACCAATGAGATTGTT+TGG | - | chr5_1:21838276-21838295 | None:intergenic | 25.0% |
| !!! | TTCCTTTTGAAATTTTACAC+AGG | + | chr5_1:21838389-21838408 | Msa0723830:intron | 25.0% |
| ! | AACAATCAATAACAGTGAAT+TGG | + | chr5_1:21838862-21838881 | Msa0723830:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTTTTTAATAGGGT+TGG | - | chr5_1:21839069-21839088 | None:intergenic | 25.0% |
| !! | TATACGGATTAAGTAATTGA+CGG | + | chr5_1:21839212-21839231 | Msa0723830:three_prime_UTR | 25.0% |
| TAAGGTTCTTGAATGGAAAA+TGG | - | chr5_1:21835782-21835801 | None:intergenic | 30.0% | |
| AAAGGATTAAGGTTCTTGAA+TGG | - | chr5_1:21835789-21835808 | None:intergenic | 30.0% | |
| TAGAAAGCGAAAAAGGATTA+AGG | - | chr5_1:21835800-21835819 | None:intergenic | 30.0% | |
| ! | GAAATTTGATGGTTAATGCA+TGG | - | chr5_1:21835953-21835972 | None:intergenic | 30.0% |
| ATCAAATTTCTAACCCCTTT+GGG | + | chr5_1:21835963-21835982 | Msa0723830:CDS | 30.0% | |
| !! | AGGAATTTTGGAAAGTAAAG+TGG | - | chr5_1:21835997-21836016 | None:intergenic | 30.0% |
| ATGAGTGAAGCTTAAATTCA+AGG | - | chr5_1:21836038-21836057 | None:intergenic | 30.0% | |
| ATATTCCTAAGAAGAAAGGA+TGG | + | chr5_1:21836238-21836257 | Msa0723830:intron | 30.0% | |
| ! | CCTAGTACTGAACAAAATTA+AGG | - | chr5_1:21836750-21836769 | None:intergenic | 30.0% |
| ! | CCTTAATTTTGTTCAGTACT+AGG | + | chr5_1:21836747-21836766 | Msa0723830:intron | 30.0% |
| AATCACTTGCAAGACTATTT+GGG | - | chr5_1:21836987-21837006 | None:intergenic | 30.0% | |
| TAATCACTTGCAAGACTATT+TGG | - | chr5_1:21836988-21837007 | None:intergenic | 30.0% | |
| !!! | CAGTTTTAATTGAACCTTGT+AGG | - | chr5_1:21837050-21837069 | None:intergenic | 30.0% |
| GCCATAGTGTTTACTTATAA+TGG | + | chr5_1:21837290-21837309 | Msa0723830:intron | 30.0% | |
| AGGCAATATATTCAAGAAGA+AGG | + | chr5_1:21837357-21837376 | Msa0723830:CDS | 30.0% | |
| ! | ATTGTTGAGGAATTTCTAGA+AGG | + | chr5_1:21837516-21837535 | Msa0723830:CDS | 30.0% |
| ATCAACCAATGCAAAAAATG+AGG | - | chr5_1:21837550-21837569 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTGCATTGGTTGA+TGG | + | chr5_1:21837549-21837568 | Msa0723830:CDS | 30.0% |
| TACTATAGATTGAAGTTCCT+CGG | - | chr5_1:21837685-21837704 | None:intergenic | 30.0% | |
| GGAACTTCAATCTATAGTAA+TGG | + | chr5_1:21837686-21837705 | Msa0723830:CDS | 30.0% | |
| ATTATCATGCCAACAGTAAA+AGG | + | chr5_1:21837714-21837733 | Msa0723830:CDS | 30.0% | |
| CTTATGATTGAGAAAAAGTC+TGG | + | chr5_1:21837783-21837802 | Msa0723830:CDS | 30.0% | |
| ATTGAGTATAATGTGCGATT+TGG | + | chr5_1:21837819-21837838 | Msa0723830:CDS | 30.0% | |
| AATTTATGACTTAACTGACC+TGG | - | chr5_1:21837857-21837876 | None:intergenic | 30.0% | |
| TCGATCACACAAATTGTATT+AGG | + | chr5_1:21837955-21837974 | Msa0723830:intron | 30.0% | |
| ATTCTTTGACATGCTTATCT+TGG | + | chr5_1:21838225-21838244 | Msa0723830:intron | 30.0% | |
| ATGTGATCATCTGTTATCAA+AGG | - | chr5_1:21838321-21838340 | None:intergenic | 30.0% | |
| GACCTGTGTAAAATTTCAAA+AGG | - | chr5_1:21838394-21838413 | None:intergenic | 30.0% | |
| ! | AAATTTTACACAGGTCTTGA+TGG | + | chr5_1:21838398-21838417 | Msa0723830:intron | 30.0% |
| AAGGAAGATTTATTGCAACT+GGG | + | chr5_1:21838646-21838665 | Msa0723830:CDS | 30.0% | |
| ! | TCATATTGTTACTTCTGTAC+GGG | - | chr5_1:21839173-21839192 | None:intergenic | 30.0% |
| ! | CTCATATTGTTACTTCTGTA+CGG | - | chr5_1:21839174-21839193 | None:intergenic | 30.0% |
| TGAATACGTGAACTGCTTAT+GGG | - | chr5_1:21835699-21835718 | None:intergenic | 35.0% | |
| ATGAATACGTGAACTGCTTA+TGG | - | chr5_1:21835700-21835719 | None:intergenic | 35.0% | |
| TGAAGAAGATGCTTCTTTCT+GGG | - | chr5_1:21835730-21835749 | None:intergenic | 35.0% | |
| TTGAAGAAGATGCTTCTTTC+TGG | - | chr5_1:21835731-21835750 | None:intergenic | 35.0% | |
| GAAAGAAGTTCCAACATTGA+AGG | - | chr5_1:21835921-21835940 | None:intergenic | 35.0% | |
| CAAAGGGGTTAGAAATTTGA+TGG | - | chr5_1:21835964-21835983 | None:intergenic | 35.0% | |
| CATCAAATTTCTAACCCCTT+TGG | + | chr5_1:21835962-21835981 | Msa0723830:CDS | 35.0% | |
| ! | ATAAATGGGCAGAGGAATTT+TGG | - | chr5_1:21836009-21836028 | None:intergenic | 35.0% |
| ! | GGTTTTTAATAAATGGGCAG+AGG | - | chr5_1:21836017-21836036 | None:intergenic | 35.0% |
| GTGCATATTCCTAAGAAGAA+AGG | + | chr5_1:21836234-21836253 | Msa0723830:intron | 35.0% | |
| AACAACCATCCTTTCTTCTT+AGG | - | chr5_1:21836246-21836265 | None:intergenic | 35.0% | |
| GTATGATATTCCAACTGCTA+AGG | + | chr5_1:21836601-21836620 | Msa0723830:CDS | 35.0% | |
| !!! | ACGATTGACCCTTGTTTTAT+TGG | + | chr5_1:21836660-21836679 | Msa0723830:intron | 35.0% |
| TTGTCATAAACTCTCCAAGA+TGG | - | chr5_1:21836914-21836933 | None:intergenic | 35.0% | |
| CTGTCTAGTATTTGTAATGC+TGG | + | chr5_1:21837067-21837086 | Msa0723830:intron | 35.0% | |
| AGGAAAATAGACAAACAGGA+AGG | - | chr5_1:21837259-21837278 | None:intergenic | 35.0% | |
| AAACACTATGGCAAAAACCT+GGG | - | chr5_1:21837282-21837301 | None:intergenic | 35.0% | |
| TAAACACTATGGCAAAAACC+TGG | - | chr5_1:21837283-21837302 | None:intergenic | 35.0% | |
| TTGAATATATTGCCTTGCTG+CGG | - | chr5_1:21837352-21837371 | None:intergenic | 35.0% | |
| ATATGCTTCTTCAAGTGTCA+TGG | - | chr5_1:21837439-21837458 | None:intergenic | 35.0% | |
| ! | TGAAGCAGTTGATTCAATGA+TGG | + | chr5_1:21837458-21837477 | Msa0723830:CDS | 35.0% |
| ! | AGTTGATTCAATGATGGTGA+AGG | + | chr5_1:21837464-21837483 | Msa0723830:CDS | 35.0% |
| ! | GTTGATTCAATGATGGTGAA+GGG | + | chr5_1:21837465-21837484 | Msa0723830:CDS | 35.0% |
| !!! | AGAAGCCTCATTTTTTGCAT+TGG | + | chr5_1:21837542-21837561 | Msa0723830:CDS | 35.0% |
| TGAAGTTCCTCGGTTAAAAT+AGG | - | chr5_1:21837675-21837694 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGTTTTGTATGC+TGG | + | chr5_1:21837759-21837778 | Msa0723830:CDS | 35.0% |
| !! | TTGTTGGTGTTTTGTATGCT+GGG | + | chr5_1:21837760-21837779 | Msa0723830:CDS | 35.0% |
| AGTCGGTAGTTAAGATATGT+TGG | + | chr5_1:21838009-21838028 | Msa0723830:intron | 35.0% | |
| ! | GATGAAAGTTGTGAAAGTGT+CGG | - | chr5_1:21838201-21838220 | None:intergenic | 35.0% |
| AATGGCAAGTAAAGGATATC+CGG | + | chr5_1:21838524-21838543 | Msa0723830:CDS | 35.0% | |
| GCATGGAATATCTTGATATC+TGG | - | chr5_1:21838606-21838625 | None:intergenic | 35.0% | |
| GATATCAAGATATTCCATGC+TGG | + | chr5_1:21838606-21838625 | Msa0723830:CDS | 35.0% | |
| GAAGGAAGATTTATTGCAAC+TGG | + | chr5_1:21838645-21838664 | Msa0723830:CDS | 35.0% | |
| AGGAAGATTTATTGCAACTG+GGG | + | chr5_1:21838647-21838666 | Msa0723830:CDS | 35.0% | |
| !! | TTTGACACATGTTGTTTCTG+AGG | - | chr5_1:21838801-21838820 | None:intergenic | 35.0% |
| TCAGAAACAACATGTGTCAA+AGG | + | chr5_1:21838800-21838819 | Msa0723830:CDS | 35.0% | |
| AGGTGTAAACTATTGTGACA+AGG | + | chr5_1:21838820-21838839 | Msa0723830:exon | 35.0% | |
| ATTGTGACAAGGTCAGTAAT+AGG | + | chr5_1:21838831-21838850 | Msa0723830:three_prime_UTR | 35.0% | |
| ACTTATATTGGAGATGCTCT+AGG | - | chr5_1:21838896-21838915 | None:intergenic | 35.0% | |
| AGCATCTCCAATATAAGTGA+GGG | + | chr5_1:21838898-21838917 | Msa0723830:three_prime_UTR | 35.0% | |
| TGGATTACCCTCACTTATAT+TGG | - | chr5_1:21838908-21838927 | None:intergenic | 35.0% | |
| AAACAAAAACTGTCTCACCT+AGG | + | chr5_1:21839016-21839035 | Msa0723830:three_prime_UTR | 35.0% | |
| AGTTCAATGTCAACTTCTCT+AGG | - | chr5_1:21839096-21839115 | None:intergenic | 35.0% | |
| AGAAGTTCCAACATTGAAGG+TGG | - | chr5_1:21835918-21835937 | None:intergenic | 40.0% | |
| AAGTGGTTTCTGAACCCAAA+GGG | - | chr5_1:21835980-21835999 | None:intergenic | 40.0% | |
| AAAGTGGTTTCTGAACCCAA+AGG | - | chr5_1:21835981-21836000 | None:intergenic | 40.0% | |
| AGAAGAAAGGATGGTTGTTC+TGG | + | chr5_1:21836247-21836266 | Msa0723830:intron | 40.0% | |
| ! | AGGATGGTTGTTCTGGTTAT+TGG | + | chr5_1:21836254-21836273 | Msa0723830:CDS | 40.0% |
| ! | GTTCTGGTTATTGGTGAAGA+AGG | + | chr5_1:21836263-21836282 | Msa0723830:CDS | 40.0% |
| ! | CACTTTGCTATGCGTTACAA+CGG | + | chr5_1:21836297-21836316 | Msa0723830:CDS | 40.0% |
| TCAGACCTTGATGTTTGTGA+TGG | + | chr5_1:21836395-21836414 | Msa0723830:CDS | 40.0% | |
| !! | TAGAGTCATTTTGCCGGAAA+TGG | + | chr5_1:21836426-21836445 | Msa0723830:CDS | 40.0% |
| !! | AGAGTCATTTTGCCGGAAAT+GGG | + | chr5_1:21836427-21836446 | Msa0723830:CDS | 40.0% |
| TTGAAAGACCTGCAACAAGT+GGG | - | chr5_1:21836484-21836503 | None:intergenic | 40.0% | |
| TTTGAAAGACCTGCAACAAG+TGG | - | chr5_1:21836485-21836504 | None:intergenic | 40.0% | |
| GGGTCAATCGTTGATATGTT+TGG | - | chr5_1:21836651-21836670 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATAAGCCATCT+TGG | + | chr5_1:21836897-21836916 | Msa0723830:intron | 40.0% |
| TGTGATAAGTCGATCCAAAC+AGG | + | chr5_1:21837023-21837042 | Msa0723830:intron | 40.0% | |
| AGGGAAGAACACCATATACA+TGG | - | chr5_1:21837234-21837253 | None:intergenic | 40.0% | |
| ATAGACAAACAGGAAGGACA+GGG | - | chr5_1:21837253-21837272 | None:intergenic | 40.0% | |
| AATAGACAAACAGGAAGGAC+AGG | - | chr5_1:21837254-21837273 | None:intergenic | 40.0% | |
| TGGGAGGAAAATAGACAAAC+AGG | - | chr5_1:21837263-21837282 | None:intergenic | 40.0% | |
| ! | TGTTTGTCTATTTTCCTCCC+AGG | + | chr5_1:21837262-21837281 | Msa0723830:intron | 40.0% |
| !! | CCATCGGCTTTGATAACAAT+TGG | - | chr5_1:21837387-21837406 | None:intergenic | 40.0% |
| CCAATTGTTATCAAAGCCGA+TGG | + | chr5_1:21837384-21837403 | Msa0723830:CDS | 40.0% | |
| TTCTTCAAGTGTCATGGCAA+CGG | - | chr5_1:21837433-21837452 | None:intergenic | 40.0% | |
| !! | ATGATGGTGAAGGGTGATTT+TGG | + | chr5_1:21837474-21837493 | Msa0723830:CDS | 40.0% |
| AATTCCACTAGAATCAGCTC+AGG | + | chr5_1:21837581-21837600 | Msa0723830:CDS | 40.0% | |
| TTCCTCGGTTAAAATAGGAG+CGG | - | chr5_1:21837670-21837689 | None:intergenic | 40.0% | |
| ! | GCTGACATTCCTTTTACTGT+TGG | - | chr5_1:21837726-21837745 | None:intergenic | 40.0% |
| GTAAAAGGAATGTCAGCAGA+AGG | + | chr5_1:21837729-21837748 | Msa0723830:CDS | 40.0% | |
| ATATATGCATGGAGCACAGT+CGG | + | chr5_1:21837992-21838011 | Msa0723830:intron | 40.0% | |
| CAAGCACCAAACAATCTCAT+TGG | + | chr5_1:21838267-21838286 | Msa0723830:intron | 40.0% | |
| ! | TTACACAGGTCTTGATGGTT+CGG | + | chr5_1:21838403-21838422 | Msa0723830:intron | 40.0% |
| !! | GTTGTGGTAATGGCAAGTAA+AGG | + | chr5_1:21838516-21838535 | Msa0723830:CDS | 40.0% |
| ATGGCAAGTAAAGGATATCC+GGG | + | chr5_1:21838525-21838544 | Msa0723830:CDS | 40.0% | |
| ATATCCGGGATCATATGAGA+AGG | + | chr5_1:21838539-21838558 | Msa0723830:CDS | 40.0% | |
| TATCCGGGATCATATGAGAA+GGG | + | chr5_1:21838540-21838559 | Msa0723830:CDS | 40.0% | |
| GGAAGATTTATTGCAACTGG+GGG | + | chr5_1:21838648-21838667 | Msa0723830:CDS | 40.0% | |
| AAAGGGAAATGATCTCGAAG+AGG | + | chr5_1:21838692-21838711 | Msa0723830:CDS | 40.0% | |
| AAGCTGTTGAGAATGTGAAC+TGG | + | chr5_1:21838733-21838752 | Msa0723830:CDS | 40.0% | |
| !! | CACATGTTGTTTCTGAGGAA+GGG | - | chr5_1:21838796-21838815 | None:intergenic | 40.0% |
| !! | ACACATGTTGTTTCTGAGGA+AGG | - | chr5_1:21838797-21838816 | None:intergenic | 40.0% |
| GAGCATCTCCAATATAAGTG+AGG | + | chr5_1:21838897-21838916 | Msa0723830:three_prime_UTR | 40.0% | |
| ! | CTAGGTGATCTTTTATGCCT+GGG | + | chr5_1:21839034-21839053 | Msa0723830:three_prime_UTR | 40.0% |
| GGGTCTTTCTGCTCTTTAAT+AGG | - | chr5_1:21839153-21839172 | None:intergenic | 40.0% | |
| GTGACTGCGCAAGATGAAAA+GGG | - | chr5_1:21835641-21835660 | None:intergenic | 45.0% | |
| AGTGACTGCGCAAGATGAAA+AGG | - | chr5_1:21835642-21835661 | None:intergenic | 45.0% | |
| GTGACTGCGCAAGATGAAAA+GGG | - | chr5_1:21835641-21835660 | None:intergenic | 45.0% | |
| AGTGACTGCGCAAGATGAAA+AGG | - | chr5_1:21835642-21835661 | None:intergenic | 45.0% | |
| GATGCTTCTTTCTGGGTTTG+AGG | - | chr5_1:21835723-21835742 | None:intergenic | 45.0% | |
| TCTTGCACCACCTTCAATGT+TGG | + | chr5_1:21835908-21835927 | Msa0723830:CDS | 45.0% | |
| AGTGGTTTCTGAACCCAAAG+GGG | - | chr5_1:21835979-21835998 | None:intergenic | 45.0% | |
| CAGAATACAGTATCGCAGGA+CGG | - | chr5_1:21836326-21836345 | None:intergenic | 45.0% | |
| AGCACAGAATACAGTATCGC+AGG | - | chr5_1:21836330-21836349 | None:intergenic | 45.0% | |
| GATACTGTATTCTGTGCTCC+TGG | + | chr5_1:21836332-21836351 | Msa0723830:CDS | 45.0% | |
| CTGCACCATCACAAACATCA+AGG | - | chr5_1:21836403-21836422 | None:intergenic | 45.0% | |
| !! | CAGCTGTAGAGTCATTTTGC+CGG | + | chr5_1:21836420-21836439 | Msa0723830:CDS | 45.0% |
| !! | GAGTCATTTTGCCGGAAATG+GGG | + | chr5_1:21836428-21836447 | Msa0723830:CDS | 45.0% |
| TGAAAGACCTGCAACAAGTG+GGG | - | chr5_1:21836483-21836502 | None:intergenic | 45.0% | |
| ! | AAGGCTGGAATTCCGACTTT+TGG | + | chr5_1:21836515-21836534 | Msa0723830:CDS | 45.0% |
| TCTGCAGATGGACCAAAAGT+CGG | - | chr5_1:21836530-21836549 | None:intergenic | 45.0% | |
| AGAAGACAGACCTTAGCAGT+TGG | - | chr5_1:21836614-21836633 | None:intergenic | 45.0% | |
| TATATTGCCTTGCTGCGGAT+GGG | - | chr5_1:21837347-21837366 | None:intergenic | 45.0% | |
| ATATATTGCCTTGCTGCGGA+TGG | - | chr5_1:21837348-21837367 | None:intergenic | 45.0% | |
| TGTTATCAAAGCCGATGGAC+TGG | + | chr5_1:21837389-21837408 | Msa0723830:CDS | 45.0% | |
| !!! | AAGGGTGATTTTGGTTCTGC+AGG | + | chr5_1:21837483-21837502 | Msa0723830:CDS | 45.0% |
| !! | GACCATAAGAGAGTTGGTGA+TGG | + | chr5_1:21837603-21837622 | Msa0723830:CDS | 45.0% |
| CACCATCACCAACTCTCTTA+TGG | - | chr5_1:21837608-21837627 | None:intergenic | 45.0% | |
| TCCTCGGTTAAAATAGGAGC+GGG | - | chr5_1:21837669-21837688 | None:intergenic | 45.0% | |
| GCAGAAGGTCGTAAGTTTGT+TGG | + | chr5_1:21837744-21837763 | Msa0723830:CDS | 45.0% | |
| AGAGTTGAGTGGTGTATCAC+TGG | + | chr5_1:21838470-21838489 | Msa0723830:CDS | 45.0% | |
| ACTTGCCATTACCACAACCA+TGG | - | chr5_1:21838514-21838533 | None:intergenic | 45.0% | |
| GTTCCCTTCTCATATGATCC+CGG | - | chr5_1:21838546-21838565 | None:intergenic | 45.0% | |
| CAACAAGCTCAGCTTCTTCA+AGG | - | chr5_1:21838581-21838600 | None:intergenic | 45.0% | |
| ! | AATCTGAAGCAGTTCCAGCA+TGG | - | chr5_1:21838623-21838642 | None:intergenic | 45.0% |
| GGAACTGCTTCAGATTCTGA+AGG | + | chr5_1:21838627-21838646 | Msa0723830:CDS | 45.0% | |
| TTGCTGTAACCCCAAGAACA+CGG | - | chr5_1:21838674-21838693 | None:intergenic | 45.0% | |
| TGTTCTTGGGGTTACAGCAA+AGG | + | chr5_1:21838674-21838693 | Msa0723830:CDS | 45.0% | |
| GTTCTTGGGGTTACAGCAAA+GGG | + | chr5_1:21838675-21838694 | Msa0723830:CDS | 45.0% | |
| TTGAGAATGTGAACTGGCCA+GGG | + | chr5_1:21838739-21838758 | Msa0723830:CDS | 45.0% | |
| GGATTCTATCGTCGGGATAT+TGG | + | chr5_1:21838762-21838781 | Msa0723830:CDS | 45.0% | |
| TCTATCGTCGGGATATTGGT+TGG | + | chr5_1:21838766-21838785 | Msa0723830:CDS | 45.0% | |
| CCAGGCATAAAAGATCACCT+AGG | - | chr5_1:21839036-21839055 | None:intergenic | 45.0% | |
| ! | CCTAGGTGATCTTTTATGCC+TGG | + | chr5_1:21839033-21839052 | Msa0723830:three_prime_UTR | 45.0% |
| ! | ATTTTGCCGGAAATGGGGAG+TGG | + | chr5_1:21836433-21836452 | Msa0723830:CDS | 50.0% |
| ! | TTTTGCCGGAAATGGGGAGT+GGG | + | chr5_1:21836434-21836453 | Msa0723830:CDS | 50.0% |
| ! | GACTTTTGGTCCATCTGCAG+AGG | + | chr5_1:21836529-21836548 | Msa0723830:CDS | 50.0% |
| TGAACCTTGTAGGGCCTGTT+TGG | - | chr5_1:21837040-21837059 | None:intergenic | 50.0% | |
| CACTATGGCAAAAACCTGGG+AGG | - | chr5_1:21837279-21837298 | None:intergenic | 50.0% | |
| ! | TTTTCCAGCAGCCAGTCCAT+CGG | - | chr5_1:21837403-21837422 | None:intergenic | 50.0% |
| !!! | GGTGATTTTGGTTCTGCAGG+TGG | + | chr5_1:21837486-21837505 | Msa0723830:CDS | 50.0% |
| ! | AGGTGGTCGTGTCATTGTTG+AGG | + | chr5_1:21837503-21837522 | Msa0723830:CDS | 50.0% |
| ! | TGGTCCTGAGCTGATTCTAG+TGG | - | chr5_1:21837588-21837607 | None:intergenic | 50.0% |
| GCTCAGGACCATAAGAGAGT+TGG | + | chr5_1:21837597-21837616 | Msa0723830:CDS | 50.0% | |
| !! | AGAGTTGGTGATGGTGACAC+AGG | + | chr5_1:21837612-21837631 | Msa0723830:CDS | 50.0% |
| !! | GAGTTGGTGATGGTGACACA+GGG | + | chr5_1:21837613-21837632 | Msa0723830:CDS | 50.0% |
| !!! | TCCCGCTCCTATTTTAACCG+AGG | + | chr5_1:21837665-21837684 | Msa0723830:CDS | 50.0% |
| ! | ATTTGGTGATCCAGAGTGCC+AGG | + | chr5_1:21837836-21837855 | Msa0723830:CDS | 50.0% |
| ACTTAACTGACCTGGCACTC+TGG | - | chr5_1:21837849-21837868 | None:intergenic | 50.0% | |
| !! | ACAGGTCTTGATGGTTCGGT+TGG | + | chr5_1:21838407-21838426 | Msa0723830:intron | 50.0% |
| ! | GGTTCGGTTGGAGTCTGATT+TGG | + | chr5_1:21838419-21838438 | Msa0723830:CDS | 50.0% |
| ! | AAGTTCTGCTTGCTGCTTGC+AGG | + | chr5_1:21838445-21838464 | Msa0723830:CDS | 50.0% |
| ! | AGTTCTGCTTGCTGCTTGCA+GGG | + | chr5_1:21838446-21838465 | Msa0723830:CDS | 50.0% |
| TGAGTGGTGTATCACTGGAC+TGG | + | chr5_1:21838475-21838494 | Msa0723830:CDS | 50.0% | |
| ATCGGCCATGGTTGTGGTAA+TGG | + | chr5_1:21838506-21838525 | Msa0723830:CDS | 50.0% | |
| GTTGAGAATGTGAACTGGCC+AGG | + | chr5_1:21838738-21838757 | Msa0723830:CDS | 50.0% | |
| TGAGAATGTGAACTGGCCAG+GGG | + | chr5_1:21838740-21838759 | Msa0723830:CDS | 50.0% | |
| ! | AGGGTTGGCATAGATAACCC+AGG | - | chr5_1:21839054-21839073 | None:intergenic | 50.0% |
| GTGCGTGTGAGCGATTGGAT+GGG | - | chr5_1:21835756-21835775 | None:intergenic | 55.0% | |
| TTCTGTGCTCCTGGCAATGC+AGG | + | chr5_1:21836341-21836360 | Msa0723830:CDS | 55.0% | |
| AATGCAGGAATCGCCAGCTC+AGG | + | chr5_1:21836356-21836375 | Msa0723830:CDS | 55.0% | |
| GCAAGTCGCATTTCCTGAGC+TGG | - | chr5_1:21836372-21836391 | None:intergenic | 55.0% | |
| CTAGTCCCACTCCCCATTTC+CGG | - | chr5_1:21836442-21836461 | None:intergenic | 55.0% | |
| !! | ATGGGGAGTGGGACTAGTTG+TGG | + | chr5_1:21836445-21836464 | Msa0723830:CDS | 55.0% |
| !! | GGAGTGGGACTAGTTGTGGT+GGG | + | chr5_1:21836449-21836468 | Msa0723830:CDS | 55.0% |
| CGATCCAAACAGGCCCTACA+AGG | + | chr5_1:21837033-21837052 | Msa0723830:intron | 55.0% | |
| TTACAGACCCATCCGCAGCA+AGG | + | chr5_1:21837337-21837356 | Msa0723830:CDS | 55.0% | |
| !! | GATGGACTGGCTGCTGGAAA+AGG | + | chr5_1:21837402-21837421 | Msa0723830:CDS | 55.0% |
| GGTGACACAGGGCCAAATAC+TGG | + | chr5_1:21837624-21837643 | Msa0723830:CDS | 55.0% | |
| GACACAGGGCCAAATACTGG+TGG | + | chr5_1:21837627-21837646 | Msa0723830:CDS | 55.0% | |
| AGGGCCAAATACTGGTGGCA+TGG | + | chr5_1:21837632-21837651 | Msa0723830:CDS | 55.0% | |
| GGGCCAAATACTGGTGGCAT+GGG | + | chr5_1:21837633-21837652 | Msa0723830:CDS | 55.0% | |
| GCACCCATGCCACCAGTATT+TGG | - | chr5_1:21837639-21837658 | None:intergenic | 55.0% | |
| ! | GTTCTGCTTGCTGCTTGCAG+GGG | + | chr5_1:21838447-21838466 | Msa0723830:CDS | 55.0% |
| !! | GTATCACTGGACTGGTCTCC+TGG | + | chr5_1:21838483-21838502 | Msa0723830:CDS | 55.0% |
| !! | ACTGGACTGGTCTCCTGGAT+CGG | + | chr5_1:21838488-21838507 | Msa0723830:CDS | 55.0% |
| GAGAATGTGAACTGGCCAGG+GGG | + | chr5_1:21838741-21838760 | Msa0723830:CDS | 55.0% | |
| CGTGCGTGTGAGCGATTGGA+TGG | - | chr5_1:21835757-21835776 | None:intergenic | 60.0% | |
| GGAACGTGCGTGTGAGCGAT+TGG | - | chr5_1:21835761-21835780 | None:intergenic | 60.0% | |
| CTGGCGATTCCTGCATTGCC+AGG | - | chr5_1:21836353-21836372 | None:intergenic | 60.0% | |
| !! | GGGAGTGGGACTAGTTGTGG+TGG | + | chr5_1:21836448-21836467 | Msa0723830:CDS | 60.0% |
| CCTGCAACAAGTGGGGCTTC+AGG | - | chr5_1:21836476-21836495 | None:intergenic | 60.0% | |
| ! | CCTGAAGCCCCACTTGTTGC+AGG | + | chr5_1:21836473-21836492 | Msa0723830:CDS | 60.0% |
| AGAGCAGCAGCCTCTGCAGA+TGG | - | chr5_1:21836542-21836561 | None:intergenic | 60.0% | |
| ! | GCAGAGGCTGCTGCTCTAGA+AGG | + | chr5_1:21836545-21836564 | Msa0723830:CDS | 60.0% |
| !! | AAAGCCGATGGACTGGCTGC+TGG | + | chr5_1:21837396-21837415 | Msa0723830:CDS | 60.0% |
| GCTTGCAGGGGAGAGTTGAG+TGG | + | chr5_1:21838459-21838478 | Msa0723830:CDS | 60.0% | |
| TCCTGGATCGGCCATGGTTG+TGG | + | chr5_1:21838500-21838519 | Msa0723830:CDS | 60.0% | |
| ACCACAACCATGGCCGATCC+AGG | - | chr5_1:21838504-21838523 | None:intergenic | 60.0% | |
| CAACTGGGGGCCGTGTTCTT+GGG | + | chr5_1:21838661-21838680 | Msa0723830:CDS | 60.0% | |
| AACTGGGGGCCGTGTTCTTG+GGG | + | chr5_1:21838662-21838681 | Msa0723830:CDS | 60.0% | |
| GGCCAGGGGGATTCTATCGT+CGG | + | chr5_1:21838754-21838773 | Msa0723830:CDS | 60.0% | |
| GCCAGGGGGATTCTATCGTC+GGG | + | chr5_1:21838755-21838774 | Msa0723830:CDS | 60.0% | |
| TCCCGACGATAGAATCCCCC+TGG | - | chr5_1:21838759-21838778 | None:intergenic | 60.0% | |
| CTGGTCTCCTGGATCGGCCA+TGG | + | chr5_1:21838494-21838513 | Msa0723830:CDS | 65.0% | |
| GCAACTGGGGGCCGTGTTCT+TGG | + | chr5_1:21838660-21838679 | Msa0723830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21835488 | 21839247 | 21835488 | ID=Msa0723830;Name=Msa0723830 |
| chr5_1 | mRNA | 21835488 | 21839247 | 21835488 | ID=Msa0723830-mRNA-1;Parent=Msa0723830;Name=Msa0723830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=372|0.75|0.8|1|0.75|0.6|5|420|524 |
| chr5_1 | exon | 21835488 | 21835730 | 21835488 | ID=Msa0723830-mRNA-1:exon:8242;Parent=Msa0723830-mRNA-1 |
| chr5_1 | exon | 21835776 | 21836157 | 21835776 | ID=Msa0723830-mRNA-1:exon:8243;Parent=Msa0723830-mRNA-1 |
| chr5_1 | exon | 21836249 | 21836622 | 21836249 | ID=Msa0723830-mRNA-1:exon:8244;Parent=Msa0723830-mRNA-1 |
| chr5_1 | exon | 21837327 | 21837857 | 21837327 | ID=Msa0723830-mRNA-1:exon:8245;Parent=Msa0723830-mRNA-1 |
| chr5_1 | exon | 21838411 | 21839247 | 21838411 | ID=Msa0723830-mRNA-1:exon:8246;Parent=Msa0723830-mRNA-1 |
| chr5_1 | five_prime_UTR | 21835488 | 21835730 | 21835488 | ID=Msa0723830-mRNA-1:five_prime_utr;Parent=Msa0723830-mRNA-1 |
| chr5_1 | five_prime_UTR | 21835776 | 21835904 | 21835776 | ID=Msa0723830-mRNA-1:five_prime_utr;Parent=Msa0723830-mRNA-1 |
| chr5_1 | CDS | 21835905 | 21836157 | 21835905 | ID=Msa0723830-mRNA-1:cds;Parent=Msa0723830-mRNA-1 |
| chr5_1 | CDS | 21836249 | 21836622 | 21836249 | ID=Msa0723830-mRNA-1:cds;Parent=Msa0723830-mRNA-1 |
| chr5_1 | CDS | 21837327 | 21837857 | 21837327 | ID=Msa0723830-mRNA-1:cds;Parent=Msa0723830-mRNA-1 |
| chr5_1 | CDS | 21838411 | 21838827 | 21838411 | ID=Msa0723830-mRNA-1:cds;Parent=Msa0723830-mRNA-1 |
| chr5_1 | three_prime_UTR | 21838828 | 21839247 | 21838828 | ID=Msa0723830-mRNA-1:three_prime_utr;Parent=Msa0723830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
