Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723820 | AES95423.2 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723820 | sp|P52420|PUR2_ARATH | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723820 | G7K3Z1 | 90.649 | 524 | 43 | 1 | 1 | 524 | 1 | 518 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061080 | Msa0723820 | 0.820548 | 6.471108e-53 | -8.615850e-47 |
| Msa0610430 | Msa0723820 | 0.807891 | 4.051042e-50 | -8.615850e-47 |
| Msa0615710 | Msa0723820 | 0.832226 | 1.066658e-55 | -8.615850e-47 |
| Msa0689260 | Msa0723820 | 0.802431 | 5.629703e-49 | -8.615850e-47 |
| Msa0692830 | Msa0723820 | 0.815374 | 9.554271e-52 | -8.615850e-47 |
| Msa0692950 | Msa0723820 | 0.820785 | 5.707737e-53 | -8.615850e-47 |
| Msa0711780 | Msa0723820 | 0.803029 | 4.236075e-49 | -8.615850e-47 |
| Msa0723820 | Msa0723830 | 0.966191 | 1.363692e-125 | -8.615850e-47 |
| Msa0723820 | Msa0764270 | 0.837657 | 4.567508e-57 | -8.615850e-47 |
| Msa0723820 | Msa0769980 | 0.804315 | 2.291025e-49 | -8.615850e-47 |
| Msa0723820 | Msa0803620 | 0.801766 | 7.710643e-49 | -8.615850e-47 |
| Msa0723820 | Msa0803670 | 0.961677 | 5.573597e-120 | -8.615850e-47 |
| Msa0723820 | Msa0808080 | 0.826692 | 2.358963e-54 | -8.615850e-47 |
| Msa0723820 | Msa0810710 | 0.858920 | 5.914126e-63 | -8.615850e-47 |
| Msa0723820 | Msa0849030 | 0.816170 | 6.347406e-52 | -8.615850e-47 |
| Msa0723820 | Msa1051200 | 0.818931 | 1.515160e-52 | -8.615850e-47 |
| Msa0723820 | Msa1106700 | 0.805187 | 1.507002e-49 | -8.615850e-47 |
| Msa0723820 | Msa1137700 | 0.807406 | 5.133424e-50 | -8.615850e-47 |
| Msa0723820 | Msa1138880 | 0.822850 | 1.899316e-53 | -8.615850e-47 |
| Msa0723820 | Msa1174040 | 0.805136 | 1.544373e-49 | -8.615850e-47 |
| Msa0723820 | Msa1181250 | 0.801171 | 1.021116e-48 | -8.615850e-47 |
| Msa0723820 | Msa1277660 | 0.800929 | 1.144282e-48 | -8.615850e-47 |
| Msa0723820 | Msa1353330 | 0.800922 | 1.148016e-48 | -8.615850e-47 |
| Msa0723820 | Msa1358250 | 0.800334 | 1.513124e-48 | -8.615850e-47 |
| Msa0723820 | Msa1454480 | 0.813760 | 2.174347e-51 | -8.615850e-47 |
| Msa0160550 | Msa0723820 | 0.806834 | 6.783812e-50 | -8.615850e-47 |
| Msa0388700 | Msa0723820 | 0.804221 | 2.397348e-49 | -8.615850e-47 |
| Msa0402790 | Msa0723820 | 0.803960 | 2.715739e-49 | -8.615850e-47 |
| Msa0407930 | Msa0723820 | 0.801549 | 8.545001e-49 | -8.615850e-47 |
| Msa0467380 | Msa0723820 | 0.818769 | 1.648995e-52 | -8.615850e-47 |
| Msa0262050 | Msa0723820 | 0.827882 | 1.224132e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723820 | MtrunA17_Chr5g0407981 | 90.458 | 524 | 43 | 2 | 1 | 524 | 1 | 517 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723820 | AT1G09830.1 | 72.125 | 513 | 131 | 3 | 19 | 523 | 22 | 530 | 0.0 | 746 |
Find 159 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATGGGCAGAGGAATTT+TGG | 0.171331 | 5_1:+21800336 | None:intergenic |
| AAGTTCTGCTTGCTGCTTGC+AGG | 0.217650 | 5_1:-21797897 | Msa0723820:CDS |
| TAAGGTTCTTGAATGGAAAA+TGG | 0.236765 | 5_1:+21800563 | None:intergenic |
| ATTAAAAGATTCATCAACTA+TGG | 0.265214 | 5_1:+21797417 | None:intergenic |
| ATGATGGTGAAGGGTGATTT+TGG | 0.268370 | 5_1:-21798868 | Msa0723820:CDS |
| ATGAATACGTGAACTGCTTA+TGG | 0.270074 | 5_1:+21800645 | None:intergenic |
| ATTATCATGCCAACAGTAAA+AGG | 0.276043 | 5_1:-21798628 | Msa0723820:CDS |
| CTAGTCCCACTCCCCATTTC+CGG | 0.278883 | 5_1:+21799903 | None:intergenic |
| GCACCCATGCCACCAGTATT+TGG | 0.280418 | 5_1:+21798706 | None:intergenic |
| TGGATTACCCTCACTTATAT+TGG | 0.283268 | 5_1:+21797437 | None:intergenic |
| TGAAGTTCCTCGGTTAAAAT+AGG | 0.288190 | 5_1:+21798670 | None:intergenic |
| ATCAAATTTCTAACCCCTTT+GGG | 0.289790 | 5_1:-21800379 | Msa0723820:CDS |
| CCTGAAGCCCCACTTGTTGC+AGG | 0.303334 | 5_1:-21799869 | Msa0723820:CDS |
| AGGATGGTTGTTCTGGTTAT+TGG | 0.303663 | 5_1:-21800088 | Msa0723820:CDS |
| GTATCACTGGACTGGTCTCC+TGG | 0.325942 | 5_1:-21797859 | Msa0723820:CDS |
| GAAGGAAGATTTATTGCAAC+TGG | 0.331396 | 5_1:-21797697 | Msa0723820:CDS |
| TAATAAATAGAAAGCGAAAA+AGG | 0.331948 | 5_1:+21800538 | None:intergenic |
| CATCAAATTTCTAACCCCTT+TGG | 0.331950 | 5_1:-21800380 | Msa0723820:CDS |
| CAAAGGGGTTAGAAATTTGA+TGG | 0.343767 | 5_1:+21800381 | None:intergenic |
| AGAAGAAAGGATGGTTGTTC+TGG | 0.350493 | 5_1:-21800095 | Msa0723820:CDS |
| AACAATCAATAACAGTGAAT+TGG | 0.351831 | 5_1:-21797480 | Msa0723820:three_prime_UTR |
| GCATGGAATATCTTGATATC+TGG | 0.352212 | 5_1:+21797739 | None:intergenic |
| GGGTCTTTCTGCTCTTTAAT+AGG | 0.355953 | 5_1:+21797192 | None:intergenic |
| CACCATCACCAACTCTCTTA+TGG | 0.363196 | 5_1:+21798737 | None:intergenic |
| ATGAGTGAAGCTTAAATTCA+AGG | 0.372123 | 5_1:+21800307 | None:intergenic |
| GGATTCTATCGTCGGGATAT+TGG | 0.375330 | 5_1:-21797580 | Msa0723820:CDS |
| AAGGCTGGAATTCCGACTTT+TGG | 0.376671 | 5_1:-21799827 | Msa0723820:CDS |
| GCAGAGGCTGCTGCTCTAGA+AGG | 0.395754 | 5_1:-21799797 | Msa0723820:CDS |
| CCTGCAACAAGTGGGGCTTC+AGG | 0.395959 | 5_1:+21799869 | None:intergenic |
| CAACAAGCTCAGCTTCTTCA+AGG | 0.401913 | 5_1:+21797764 | None:intergenic |
| GATGCTTCTTTCTGGGTTTG+AGG | 0.401959 | 5_1:+21800622 | None:intergenic |
| TGAATACGTGAACTGCTTAT+GGG | 0.404091 | 5_1:+21800646 | None:intergenic |
| AGTTCTGCTTGCTGCTTGCA+GGG | 0.410296 | 5_1:-21797896 | Msa0723820:CDS |
| CCATCGGCTTTGATAACAAT+TGG | 0.410397 | 5_1:+21798958 | None:intergenic |
| TCTTTCAAATTATTTAGTTA+AGG | 0.411140 | 5_1:-21799846 | Msa0723820:CDS |
| TCAAATTATTTAGTTAAGGC+TGG | 0.411335 | 5_1:-21799842 | Msa0723820:CDS |
| CTGGCGATTCCTGCATTGCC+AGG | 0.411607 | 5_1:+21799992 | None:intergenic |
| GTGCATATTCCTAAGAAGAA+AGG | 0.415827 | 5_1:-21800108 | Msa0723820:intron |
| ATTGAGTATAATGTGCGATT+TGG | 0.421542 | 5_1:-21798523 | Msa0723820:CDS |
| TCCTGGATCGGCCATGGTTG+TGG | 0.425274 | 5_1:-21797842 | Msa0723820:CDS |
| CAAAACATTTGAAAACACTT+TGG | 0.426128 | 5_1:+21800261 | None:intergenic |
| AATGGCAAGTAAAGGATATC+CGG | 0.429568 | 5_1:-21797818 | Msa0723820:CDS |
| GGTTCGGTTGGAGTCTGATT+TGG | 0.434602 | 5_1:-21797923 | Msa0723820:CDS |
| TTACACAGGTCTTGATGGTT+CGG | 0.436632 | 5_1:-21797939 | Msa0723820:intron |
| AGTGACTGCGCAAGATGAAA+AGG | 0.439796 | 5_1:+21800674 | None:intergenic |
| AGTGACTGCGCAAGATGAAA+AGG | 0.439796 | 5_1:+21800703 | None:intergenic |
| GATGGACTGGCTGCTGGAAA+AGG | 0.441425 | 5_1:-21798940 | Msa0723820:CDS |
| GCAGAAGGTCGTAAGTTTGT+TGG | 0.452921 | 5_1:-21798598 | Msa0723820:CDS |
| TTCTGTGCTCCTGGCAATGC+AGG | 0.456673 | 5_1:-21800001 | Msa0723820:CDS |
| CTCATATTGTTACTTCTGTA+CGG | 0.457872 | 5_1:+21797171 | None:intergenic |
| ATTGTGACAAGGTCAGTAAT+AGG | 0.458217 | 5_1:-21797511 | Msa0723820:three_prime_UTR |
| TACTATAGATTGAAGTTCCT+CGG | 0.460702 | 5_1:+21798660 | None:intergenic |
| AAAGGATTAAGGTTCTTGAA+TGG | 0.464719 | 5_1:+21800556 | None:intergenic |
| AAAGCCGATGGACTGGCTGC+TGG | 0.467487 | 5_1:-21798946 | Msa0723820:CDS |
| CACATGTTGTTTCTGAGGAA+GGG | 0.474074 | 5_1:+21797549 | None:intergenic |
| ATCGGCCATGGTTGTGGTAA+TGG | 0.478772 | 5_1:-21797836 | Msa0723820:CDS |
| GTTCTGGTTATTGGTGAAGA+AGG | 0.480331 | 5_1:-21800079 | Msa0723820:CDS |
| ACTTATATTGGAGATGCTCT+AGG | 0.482634 | 5_1:+21797449 | None:intergenic |
| ACAGGTCTTGATGGTTCGGT+TGG | 0.484956 | 5_1:-21797935 | Msa0723820:intron |
| ATTGTTGAGGAATTTCTAGA+AGG | 0.486684 | 5_1:-21798826 | Msa0723820:CDS |
| AAGTGGTTTCTGAACCCAAA+GGG | 0.488153 | 5_1:+21800365 | None:intergenic |
| AGAGTTGAGTGGTGTATCAC+TGG | 0.488231 | 5_1:-21797872 | Msa0723820:CDS |
| CTGGTCTCCTGGATCGGCCA+TGG | 0.489094 | 5_1:-21797848 | Msa0723820:CDS |
| ACATTATACTCAATTAACTT+AGG | 0.490907 | 5_1:+21798532 | None:intergenic |
| ATGGGGAGTGGGACTAGTTG+TGG | 0.494753 | 5_1:-21799897 | Msa0723820:CDS |
| ACACATGTTGTTTCTGAGGA+AGG | 0.495014 | 5_1:+21797548 | None:intergenic |
| TCTTGCACCACCTTCAATGT+TGG | 0.500411 | 5_1:-21800434 | Msa0723820:CDS |
| TGTTATCAAAGCCGATGGAC+TGG | 0.502419 | 5_1:-21798953 | Msa0723820:CDS |
| GTTCTTGGGGTTACAGCAAA+GGG | 0.503275 | 5_1:-21797667 | Msa0723820:CDS |
| GTTGAGAATGTGAACTGGCC+AGG | 0.508310 | 5_1:-21797604 | Msa0723820:CDS |
| ACCACAACCATGGCCGATCC+AGG | 0.508477 | 5_1:+21797841 | None:intergenic |
| AGGCAATATATTCAAGAAGA+AGG | 0.509444 | 5_1:-21798985 | Msa0723820:CDS |
| GAAAGAAGTTCCAACATTGA+AGG | 0.509915 | 5_1:+21800424 | None:intergenic |
| GGTGACACAGGGCCAAATAC+TGG | 0.517092 | 5_1:-21798718 | Msa0723820:CDS |
| AATGCAGGAATCGCCAGCTC+AGG | 0.518585 | 5_1:-21799986 | Msa0723820:CDS |
| ATTTGGTGATCCAGAGTGCC+AGG | 0.519355 | 5_1:-21798506 | Msa0723820:intron |
| TCATATTGTTACTTCTGTAC+GGG | 0.522406 | 5_1:+21797172 | None:intergenic |
| TATACGGATTAAGTAATTGA+CGG | 0.522416 | 5_1:-21797130 | Msa0723820:three_prime_UTR |
| GCAAGTCGCATTTCCTGAGC+TGG | 0.523866 | 5_1:+21799973 | None:intergenic |
| ATATATTGCCTTGCTGCGGA+TGG | 0.524592 | 5_1:+21798997 | None:intergenic |
| AGTTCAATGTCAACTTCTCT+AGG | 0.526075 | 5_1:+21797249 | None:intergenic |
| GTTCTGCTTGCTGCTTGCAG+GGG | 0.528528 | 5_1:-21797895 | Msa0723820:CDS |
| AGGGCCAAATACTGGTGGCA+TGG | 0.531074 | 5_1:-21798710 | Msa0723820:CDS |
| ACTTAACTGACCTGGCACTC+TGG | 0.532548 | 5_1:+21798496 | None:intergenic |
| TCCTCGGTTAAAATAGGAGC+GGG | 0.532872 | 5_1:+21798676 | None:intergenic |
| ATATGCTTCTTCAAGTGTCA+TGG | 0.538051 | 5_1:+21798906 | None:intergenic |
| TCTATCGTCGGGATATTGGT+TGG | 0.538281 | 5_1:-21797576 | Msa0723820:CDS |
| TATATTGCCTTGCTGCGGAT+GGG | 0.542430 | 5_1:+21798998 | None:intergenic |
| GTGACTGCGCAAGATGAAAA+GGG | 0.542547 | 5_1:+21800675 | None:intergenic |
| GTGACTGCGCAAGATGAAAA+GGG | 0.542547 | 5_1:+21800704 | None:intergenic |
| GGAACTTCAATCTATAGTAA+TGG | 0.543780 | 5_1:-21798656 | Msa0723820:CDS |
| AGAGTTGGTGATGGTGACAC+AGG | 0.544390 | 5_1:-21798730 | Msa0723820:CDS |
| TGTTCTTGGGGTTACAGCAA+AGG | 0.545679 | 5_1:-21797668 | Msa0723820:CDS |
| GGGCCAAATACTGGTGGCAT+GGG | 0.551071 | 5_1:-21798709 | Msa0723820:CDS |
| AGCACAGAATACAGTATCGC+AGG | 0.554069 | 5_1:+21800015 | None:intergenic |
| TTGAGAATGTGAACTGGCCA+GGG | 0.555410 | 5_1:-21797603 | Msa0723820:CDS |
| GAAATTTGATGGTTAATGCA+TGG | 0.555985 | 5_1:+21800392 | None:intergenic |
| TTCTTCAAGTGTCATGGCAA+CGG | 0.559738 | 5_1:+21798912 | None:intergenic |
| AGAGCAGCAGCCTCTGCAGA+TGG | 0.563220 | 5_1:+21799803 | None:intergenic |
| TTTATTAGAAGATGAAGTAG+CGG | 0.565641 | 5_1:+21800488 | None:intergenic |
| TGGTCCTGAGCTGATTCTAG+TGG | 0.566864 | 5_1:+21798757 | None:intergenic |
| TTTGACACATGTTGTTTCTG+AGG | 0.567828 | 5_1:+21797544 | None:intergenic |
| AAGGAAGATTTATTGCAACT+GGG | 0.569664 | 5_1:-21797696 | Msa0723820:CDS |
| ATGGCAAGTAAAGGATATCC+GGG | 0.575678 | 5_1:-21797817 | Msa0723820:CDS |
| TCAGACCTTGATGTTTGTGA+TGG | 0.577116 | 5_1:-21799947 | Msa0723820:CDS |
| GATACTGTATTCTGTGCTCC+TGG | 0.577249 | 5_1:-21800010 | Msa0723820:CDS |
| GTTCCCTTCTCATATGATCC+CGG | 0.579563 | 5_1:+21797799 | None:intergenic |
| ACTGGACTGGTCTCCTGGAT+CGG | 0.579914 | 5_1:-21797854 | Msa0723820:CDS |
| TCAGAAACAACATGTGTCAA+AGG | 0.580030 | 5_1:-21797542 | Msa0723820:CDS |
| GTATGATATTCCAACTGCTA+AGG | 0.581971 | 5_1:-21799741 | Msa0723820:intron |
| GTTGTGGTAATGGCAAGTAA+AGG | 0.584088 | 5_1:-21797826 | Msa0723820:CDS |
| GATATCAAGATATTCCATGC+TGG | 0.584948 | 5_1:-21797736 | Msa0723820:CDS |
| CACTTTGCTATGCGTTACAA+CGG | 0.589760 | 5_1:-21800045 | Msa0723820:CDS |
| AGAAGACAGACCTTAGCAGT+TGG | 0.591379 | 5_1:+21799731 | None:intergenic |
| GCTCAGGACCATAAGAGAGT+TGG | 0.593929 | 5_1:-21798745 | Msa0723820:CDS |
| AGCATCTCCAATATAAGTGA+GGG | 0.596396 | 5_1:-21797444 | Msa0723820:three_prime_UTR |
| TTGAAAGACCTGCAACAAGT+GGG | 0.599268 | 5_1:+21799861 | None:intergenic |
| TTTGAAAGACCTGCAACAAG+TGG | 0.600759 | 5_1:+21799860 | None:intergenic |
| AAGCTGTTGAGAATGTGAAC+TGG | 0.600765 | 5_1:-21797609 | Msa0723820:CDS |
| CCAATTGTTATCAAAGCCGA+TGG | 0.603526 | 5_1:-21798958 | Msa0723820:CDS |
| GGAACTGCTTCAGATTCTGA+AGG | 0.606903 | 5_1:-21797715 | Msa0723820:CDS |
| GGAAGATTTATTGCAACTGG+GGG | 0.611220 | 5_1:-21797694 | Msa0723820:CDS |
| ACTTGCCATTACCACAACCA+TGG | 0.611693 | 5_1:+21797831 | None:intergenic |
| TGAGTGGTGTATCACTGGAC+TGG | 0.613928 | 5_1:-21797867 | Msa0723820:CDS |
| ATATCCGGGATCATATGAGA+AGG | 0.614098 | 5_1:-21797803 | Msa0723820:CDS |
| AATTCCACTAGAATCAGCTC+AGG | 0.614376 | 5_1:-21798761 | Msa0723820:CDS |
| CTGCACCATCACAAACATCA+AGG | 0.618468 | 5_1:+21799942 | None:intergenic |
| GTAAAAGGAATGTCAGCAGA+AGG | 0.618962 | 5_1:-21798613 | Msa0723820:CDS |
| AATCTGAAGCAGTTCCAGCA+TGG | 0.624986 | 5_1:+21797722 | None:intergenic |
| TGAAAGACCTGCAACAAGTG+GGG | 0.625237 | 5_1:+21799862 | None:intergenic |
| GGAGTGGGACTAGTTGTGGT+GGG | 0.626311 | 5_1:-21799893 | Msa0723820:CDS |
| GGGAGTGGGACTAGTTGTGG+TGG | 0.628470 | 5_1:-21799894 | Msa0723820:CDS |
| AGGAAGATTTATTGCAACTG+GGG | 0.628668 | 5_1:-21797695 | Msa0723820:CDS |
| TTGAATATATTGCCTTGCTG+CGG | 0.629155 | 5_1:+21798993 | None:intergenic |
| TGAAGCAGTTGATTCAATGA+TGG | 0.629647 | 5_1:-21798884 | Msa0723820:CDS |
| TTGCTGTAACCCCAAGAACA+CGG | 0.631724 | 5_1:+21797671 | None:intergenic |
| GAGCATCTCCAATATAAGTG+AGG | 0.634649 | 5_1:-21797445 | Msa0723820:three_prime_UTR |
| GCTTGCAGGGGAGAGTTGAG+TGG | 0.637437 | 5_1:-21797883 | Msa0723820:CDS |
| TATCCGGGATCATATGAGAA+GGG | 0.637947 | 5_1:-21797802 | Msa0723820:CDS |
| TCTGCAGATGGACCAAAAGT+CGG | 0.638443 | 5_1:+21799815 | None:intergenic |
| AGTTGATTCAATGATGGTGA+AGG | 0.638741 | 5_1:-21798878 | Msa0723820:CDS |
| GAGTTGGTGATGGTGACACA+GGG | 0.642541 | 5_1:-21798729 | Msa0723820:CDS |
| AGAAGTTCCAACATTGAAGG+TGG | 0.645826 | 5_1:+21800427 | None:intergenic |
| GACCATAAGAGAGTTGGTGA+TGG | 0.648658 | 5_1:-21798739 | Msa0723820:CDS |
| AGGTGGTCGTGTCATTGTTG+AGG | 0.653092 | 5_1:-21798839 | Msa0723820:CDS |
| AGTGGTTTCTGAACCCAAAG+GGG | 0.667916 | 5_1:+21800366 | None:intergenic |
| ATATTCCTAAGAAGAAAGGA+TGG | 0.668291 | 5_1:-21800104 | Msa0723820:intron |
| TTCCTCGGTTAAAATAGGAG+CGG | 0.674048 | 5_1:+21798675 | None:intergenic |
| GTTGATTCAATGATGGTGAA+GGG | 0.681410 | 5_1:-21798877 | Msa0723820:CDS |
| AGGTGTAAACTATTGTGACA+AGG | 0.681822 | 5_1:-21797522 | Msa0723820:exon |
| CAGAATACAGTATCGCAGGA+CGG | 0.684316 | 5_1:+21800019 | None:intergenic |
| AAAGGGAAATGATCTCGAAG+AGG | 0.685275 | 5_1:-21797650 | Msa0723820:CDS |
| GACACAGGGCCAAATACTGG+TGG | 0.686532 | 5_1:-21798715 | Msa0723820:CDS |
| AAAGTGGTTTCTGAACCCAA+AGG | 0.686607 | 5_1:+21800364 | None:intergenic |
| TTACAGACCCATCCGCAGCA+AGG | 0.690175 | 5_1:-21799005 | Msa0723820:CDS |
| AGGGTTGGCATAGATAACCC+AGG | 0.694290 | 5_1:+21797291 | None:intergenic |
| TGAGAATGTGAACTGGCCAG+GGG | 0.720727 | 5_1:-21797602 | Msa0723820:CDS |
| CCAGGCATAAAAGATCACCT+AGG | 0.727326 | 5_1:+21797309 | None:intergenic |
| GAGAATGTGAACTGGCCAGG+GGG | 0.755542 | 5_1:-21797601 | Msa0723820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTTTTCATATTATA+CGG | - | chr5_1:21800825-21800844 | Msa0723820:five_prime_UTR | 10.0% |
| !!! | ATTCAAGGTTTTTAATAAAT+GGG | + | chr5_1:21797652-21797671 | None:intergenic | 15.0% |
| !!! | AATTCAAGGTTTTTAATAAA+TGG | + | chr5_1:21797653-21797672 | None:intergenic | 15.0% |
| !! | TCTTTCAAATTATTTAGTTA+AGG | - | chr5_1:21798125-21798144 | Msa0723820:intron | 15.0% |
| !!! | TCTTAATATTTTTATTAGTC+AGG | - | chr5_1:21798762-21798781 | Msa0723820:CDS | 15.0% |
| !!! | ACATTTTTAAAAGAACAATA+GGG | + | chr5_1:21799695-21799714 | None:intergenic | 15.0% |
| !!! | AACATTTTTAAAAGAACAAT+AGG | + | chr5_1:21799696-21799715 | None:intergenic | 15.0% |
| !!! | TTGGTTTTATTAAAAACAAA+AGG | - | chr5_1:21799915-21799934 | Msa0723820:CDS | 15.0% |
| !!! | TGGTTTTATTAAAAACAAAA+GGG | - | chr5_1:21799916-21799935 | Msa0723820:CDS | 15.0% |
| !!! | TATCTTTTTGCTTTTTAATA+GGG | + | chr5_1:21800702-21800721 | None:intergenic | 15.0% |
| !!! | GTACATTTTATTTCGAATTT+CGG | - | chr5_1:21797124-21797143 | Msa0723820:three_prime_UTR | 20.0% |
| !!! | ACATTTTAAAATGAATGAGT+GGG | + | chr5_1:21797154-21797173 | None:intergenic | 20.0% |
| !! | TAATAAATAGAAAGCGAAAA+AGG | + | chr5_1:21797436-21797455 | None:intergenic | 20.0% |
| !! | ATATCATTCCAATAAAACAA+GGG | + | chr5_1:21798300-21798319 | None:intergenic | 20.0% |
| !! | AATATCATTCCAATAAAACA+AGG | + | chr5_1:21798301-21798320 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTAGTCAGGT+TGG | - | chr5_1:21798766-21798785 | Msa0723820:CDS | 20.0% |
| !! | ACATTATACTCAATTAACTT+AGG | + | chr5_1:21799442-21799461 | None:intergenic | 20.0% |
| !!! | ACAATGTATTTCAATTTTCA+CGG | + | chr5_1:21799541-21799560 | None:intergenic | 20.0% |
| !! | ATATAGTTATCATATATGCA+TGG | - | chr5_1:21799610-21799629 | Msa0723820:intron | 20.0% |
| !!! | GGTTTTATTAAAAACAAAAG+GGG | - | chr5_1:21799917-21799936 | Msa0723820:CDS | 20.0% |
| !! | ATTAAAAGATTCATCAACTA+TGG | + | chr5_1:21800557-21800576 | None:intergenic | 20.0% |
| !!! | TTTTGTATAACAGAATTGAT+AGG | - | chr5_1:21800582-21800601 | Msa0723820:intron | 20.0% |
| !!! | GTATCTTTTTGCTTTTTAAT+AGG | + | chr5_1:21800703-21800722 | None:intergenic | 20.0% |
| !!! | CATTTTAAAATGAATGAGTG+GGG | + | chr5_1:21797153-21797172 | None:intergenic | 25.0% |
| !!! | CACATTTTAAAATGAATGAG+TGG | + | chr5_1:21797155-21797174 | None:intergenic | 25.0% |
| ! | TTTATTAGAAGATGAAGTAG+CGG | + | chr5_1:21797486-21797505 | None:intergenic | 25.0% |
| !!! | AAACTCTGTAATTTTGAAAC+AGG | - | chr5_1:21797504-21797523 | Msa0723820:three_prime_UTR | 25.0% |
| ! | CAAAACATTTGAAAACACTT+TGG | + | chr5_1:21797713-21797732 | None:intergenic | 25.0% |
| ! | TCAAATTATTTAGTTAAGGC+TGG | - | chr5_1:21798129-21798148 | Msa0723820:intron | 25.0% |
| !! | CTAGTACTGAACAAAATTAA+GGG | + | chr5_1:21798378-21798397 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATACAAACA+TGG | + | chr5_1:21798403-21798422 | None:intergenic | 25.0% |
| ! | TATATCGTAAGAGTTTATCA+TGG | - | chr5_1:21798432-21798451 | Msa0723820:intron | 25.0% |
| !!! | AGTTTTAATTGAACCTTGTA+GGG | + | chr5_1:21798678-21798697 | None:intergenic | 25.0% |
| ! | GGAATAAAGAGAACAAATAA+GGG | + | chr5_1:21798842-21798861 | None:intergenic | 25.0% |
| ! | TGGAATAAAGAGAACAAATA+AGG | + | chr5_1:21798843-21798862 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTCCATGTATA+TGG | - | chr5_1:21798849-21798868 | Msa0723820:CDS | 25.0% |
| ! | TCCATTATAAGTAAACACTA+TGG | + | chr5_1:21798923-21798942 | None:intergenic | 25.0% |
| !! | GTTAAAGTCTAGAACTTATA+AGG | - | chr5_1:21799559-21799578 | Msa0723820:intron | 25.0% |
| !!! | TTGTTCACTTTTCTTTGTTT+TGG | - | chr5_1:21799748-21799767 | Msa0723820:CDS | 25.0% |
| ! | ATAAAACCAATGAGATTGTT+TGG | + | chr5_1:21799905-21799924 | None:intergenic | 25.0% |
| !!! | TTCCTTTTGAAATTTTACAC+AGG | - | chr5_1:21800018-21800037 | Msa0723820:CDS | 25.0% |
| ! | AACAATCAATAACAGTGAAT+TGG | - | chr5_1:21800491-21800510 | Msa0723820:five_prime_UTR | 25.0% |
| !!! | TTTTTGCTTTTTAATAGGGT+TGG | + | chr5_1:21800698-21800717 | None:intergenic | 25.0% |
| !! | TATACGGATTAAGTAATTGA+CGG | - | chr5_1:21800841-21800860 | Msa0723820:five_prime_UTR | 25.0% |
| TAAGGTTCTTGAATGGAAAA+TGG | + | chr5_1:21797411-21797430 | None:intergenic | 30.0% | |
| AAAGGATTAAGGTTCTTGAA+TGG | + | chr5_1:21797418-21797437 | None:intergenic | 30.0% | |
| TAGAAAGCGAAAAAGGATTA+AGG | + | chr5_1:21797429-21797448 | None:intergenic | 30.0% | |
| ! | GAAATTTGATGGTTAATGCA+TGG | + | chr5_1:21797582-21797601 | None:intergenic | 30.0% |
| ATCAAATTTCTAACCCCTTT+GGG | - | chr5_1:21797592-21797611 | Msa0723820:CDS | 30.0% | |
| !! | AGGAATTTTGGAAAGTAAAG+TGG | + | chr5_1:21797626-21797645 | None:intergenic | 30.0% |
| ATGAGTGAAGCTTAAATTCA+AGG | + | chr5_1:21797667-21797686 | None:intergenic | 30.0% | |
| ATATTCCTAAGAAGAAAGGA+TGG | - | chr5_1:21797867-21797886 | Msa0723820:CDS | 30.0% | |
| ! | CCTAGTACTGAACAAAATTA+AGG | + | chr5_1:21798379-21798398 | None:intergenic | 30.0% |
| ! | CCTTAATTTTGTTCAGTACT+AGG | - | chr5_1:21798376-21798395 | Msa0723820:intron | 30.0% |
| AATCACTTGCAAGACTATTT+GGG | + | chr5_1:21798616-21798635 | None:intergenic | 30.0% | |
| TAATCACTTGCAAGACTATT+TGG | + | chr5_1:21798617-21798636 | None:intergenic | 30.0% | |
| !!! | CAGTTTTAATTGAACCTTGT+AGG | + | chr5_1:21798679-21798698 | None:intergenic | 30.0% |
| GCCATAGTGTTTACTTATAA+TGG | - | chr5_1:21798919-21798938 | Msa0723820:CDS | 30.0% | |
| AGGCAATATATTCAAGAAGA+AGG | - | chr5_1:21798986-21799005 | Msa0723820:CDS | 30.0% | |
| ! | ATTGTTGAGGAATTTCTAGA+AGG | - | chr5_1:21799145-21799164 | Msa0723820:intron | 30.0% |
| ATCAACCAATGCAAAAAATG+AGG | + | chr5_1:21799179-21799198 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTGCATTGGTTGA+TGG | - | chr5_1:21799178-21799197 | Msa0723820:intron | 30.0% |
| TACTATAGATTGAAGTTCCT+CGG | + | chr5_1:21799314-21799333 | None:intergenic | 30.0% | |
| GGAACTTCAATCTATAGTAA+TGG | - | chr5_1:21799315-21799334 | Msa0723820:intron | 30.0% | |
| ATTATCATGCCAACAGTAAA+AGG | - | chr5_1:21799343-21799362 | Msa0723820:intron | 30.0% | |
| CTTATGATTGAGAAAAAGTC+TGG | - | chr5_1:21799412-21799431 | Msa0723820:intron | 30.0% | |
| ATTGAGTATAATGTGCGATT+TGG | - | chr5_1:21799448-21799467 | Msa0723820:intron | 30.0% | |
| AATTTATGACTTAACTGACC+TGG | + | chr5_1:21799486-21799505 | None:intergenic | 30.0% | |
| TCGATCACACAAATTGTATT+AGG | - | chr5_1:21799584-21799603 | Msa0723820:intron | 30.0% | |
| ATTCTTTGACATGCTTATCT+TGG | - | chr5_1:21799854-21799873 | Msa0723820:CDS | 30.0% | |
| ATGTGATCATCTGTTATCAA+AGG | + | chr5_1:21799950-21799969 | None:intergenic | 30.0% | |
| GACCTGTGTAAAATTTCAAA+AGG | + | chr5_1:21800023-21800042 | None:intergenic | 30.0% | |
| ! | AAATTTTACACAGGTCTTGA+TGG | - | chr5_1:21800027-21800046 | Msa0723820:CDS | 30.0% |
| AAGGAAGATTTATTGCAACT+GGG | - | chr5_1:21800275-21800294 | Msa0723820:CDS | 30.0% | |
| ! | TCATATTGTTACTTCTGTAC+GGG | + | chr5_1:21800802-21800821 | None:intergenic | 30.0% |
| ! | CTCATATTGTTACTTCTGTA+CGG | + | chr5_1:21800803-21800822 | None:intergenic | 30.0% |
| TGAATACGTGAACTGCTTAT+GGG | + | chr5_1:21797328-21797347 | None:intergenic | 35.0% | |
| ATGAATACGTGAACTGCTTA+TGG | + | chr5_1:21797329-21797348 | None:intergenic | 35.0% | |
| TGAAGAAGATGCTTCTTTCT+GGG | + | chr5_1:21797359-21797378 | None:intergenic | 35.0% | |
| TTGAAGAAGATGCTTCTTTC+TGG | + | chr5_1:21797360-21797379 | None:intergenic | 35.0% | |
| GAAAGAAGTTCCAACATTGA+AGG | + | chr5_1:21797550-21797569 | None:intergenic | 35.0% | |
| CAAAGGGGTTAGAAATTTGA+TGG | + | chr5_1:21797593-21797612 | None:intergenic | 35.0% | |
| CATCAAATTTCTAACCCCTT+TGG | - | chr5_1:21797591-21797610 | Msa0723820:CDS | 35.0% | |
| ! | ATAAATGGGCAGAGGAATTT+TGG | + | chr5_1:21797638-21797657 | None:intergenic | 35.0% |
| ! | GGTTTTTAATAAATGGGCAG+AGG | + | chr5_1:21797646-21797665 | None:intergenic | 35.0% |
| GTGCATATTCCTAAGAAGAA+AGG | - | chr5_1:21797863-21797882 | Msa0723820:CDS | 35.0% | |
| AACAACCATCCTTTCTTCTT+AGG | + | chr5_1:21797875-21797894 | None:intergenic | 35.0% | |
| GTATGATATTCCAACTGCTA+AGG | - | chr5_1:21798230-21798249 | Msa0723820:intron | 35.0% | |
| !!! | ACGATTGACCCTTGTTTTAT+TGG | - | chr5_1:21798289-21798308 | Msa0723820:intron | 35.0% |
| TTGTCATAAACTCTCCAAGA+TGG | + | chr5_1:21798543-21798562 | None:intergenic | 35.0% | |
| CTGTCTAGTATTTGTAATGC+TGG | - | chr5_1:21798696-21798715 | Msa0723820:CDS | 35.0% | |
| AGGAAAATAGACAAACAGGA+AGG | + | chr5_1:21798888-21798907 | None:intergenic | 35.0% | |
| AAACACTATGGCAAAAACCT+GGG | + | chr5_1:21798911-21798930 | None:intergenic | 35.0% | |
| TAAACACTATGGCAAAAACC+TGG | + | chr5_1:21798912-21798931 | None:intergenic | 35.0% | |
| TTGAATATATTGCCTTGCTG+CGG | + | chr5_1:21798981-21799000 | None:intergenic | 35.0% | |
| ATATGCTTCTTCAAGTGTCA+TGG | + | chr5_1:21799068-21799087 | None:intergenic | 35.0% | |
| ! | TGAAGCAGTTGATTCAATGA+TGG | - | chr5_1:21799087-21799106 | Msa0723820:intron | 35.0% |
| ! | AGTTGATTCAATGATGGTGA+AGG | - | chr5_1:21799093-21799112 | Msa0723820:intron | 35.0% |
| ! | GTTGATTCAATGATGGTGAA+GGG | - | chr5_1:21799094-21799113 | Msa0723820:intron | 35.0% |
| !!! | AGAAGCCTCATTTTTTGCAT+TGG | - | chr5_1:21799171-21799190 | Msa0723820:intron | 35.0% |
| TGAAGTTCCTCGGTTAAAAT+AGG | + | chr5_1:21799304-21799323 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTGTTTTGTATGC+TGG | - | chr5_1:21799388-21799407 | Msa0723820:intron | 35.0% |
| !! | TTGTTGGTGTTTTGTATGCT+GGG | - | chr5_1:21799389-21799408 | Msa0723820:intron | 35.0% |
| AGTCGGTAGTTAAGATATGT+TGG | - | chr5_1:21799638-21799657 | Msa0723820:intron | 35.0% | |
| ! | GATGAAAGTTGTGAAAGTGT+CGG | + | chr5_1:21799830-21799849 | None:intergenic | 35.0% |
| AATGGCAAGTAAAGGATATC+CGG | - | chr5_1:21800153-21800172 | Msa0723820:intron | 35.0% | |
| GCATGGAATATCTTGATATC+TGG | + | chr5_1:21800235-21800254 | None:intergenic | 35.0% | |
| GATATCAAGATATTCCATGC+TGG | - | chr5_1:21800235-21800254 | Msa0723820:CDS | 35.0% | |
| GAAGGAAGATTTATTGCAAC+TGG | - | chr5_1:21800274-21800293 | Msa0723820:CDS | 35.0% | |
| AGGAAGATTTATTGCAACTG+GGG | - | chr5_1:21800276-21800295 | Msa0723820:CDS | 35.0% | |
| !! | TTTGACACATGTTGTTTCTG+AGG | + | chr5_1:21800430-21800449 | None:intergenic | 35.0% |
| TCAGAAACAACATGTGTCAA+AGG | - | chr5_1:21800429-21800448 | Msa0723820:CDS | 35.0% | |
| AGGTGTAAACTATTGTGACA+AGG | - | chr5_1:21800449-21800468 | Msa0723820:exon | 35.0% | |
| ATTGTGACAAGGTCAGTAAT+AGG | - | chr5_1:21800460-21800479 | Msa0723820:five_prime_UTR | 35.0% | |
| ACTTATATTGGAGATGCTCT+AGG | + | chr5_1:21800525-21800544 | None:intergenic | 35.0% | |
| AGCATCTCCAATATAAGTGA+GGG | - | chr5_1:21800527-21800546 | Msa0723820:five_prime_UTR | 35.0% | |
| TGGATTACCCTCACTTATAT+TGG | + | chr5_1:21800537-21800556 | None:intergenic | 35.0% | |
| AAACAAAAACTGTCTCACCT+AGG | - | chr5_1:21800645-21800664 | Msa0723820:five_prime_UTR | 35.0% | |
| AGTTCAATGTCAACTTCTCT+AGG | + | chr5_1:21800725-21800744 | None:intergenic | 35.0% | |
| AGAAGTTCCAACATTGAAGG+TGG | + | chr5_1:21797547-21797566 | None:intergenic | 40.0% | |
| AAGTGGTTTCTGAACCCAAA+GGG | + | chr5_1:21797609-21797628 | None:intergenic | 40.0% | |
| AAAGTGGTTTCTGAACCCAA+AGG | + | chr5_1:21797610-21797629 | None:intergenic | 40.0% | |
| AGAAGAAAGGATGGTTGTTC+TGG | - | chr5_1:21797876-21797895 | Msa0723820:CDS | 40.0% | |
| ! | AGGATGGTTGTTCTGGTTAT+TGG | - | chr5_1:21797883-21797902 | Msa0723820:CDS | 40.0% |
| ! | GTTCTGGTTATTGGTGAAGA+AGG | - | chr5_1:21797892-21797911 | Msa0723820:CDS | 40.0% |
| ! | CACTTTGCTATGCGTTACAA+CGG | - | chr5_1:21797926-21797945 | Msa0723820:CDS | 40.0% |
| TCAGACCTTGATGTTTGTGA+TGG | - | chr5_1:21798024-21798043 | Msa0723820:intron | 40.0% | |
| !! | TAGAGTCATTTTGCCGGAAA+TGG | - | chr5_1:21798055-21798074 | Msa0723820:intron | 40.0% |
| !! | AGAGTCATTTTGCCGGAAAT+GGG | - | chr5_1:21798056-21798075 | Msa0723820:intron | 40.0% |
| TTGAAAGACCTGCAACAAGT+GGG | + | chr5_1:21798113-21798132 | None:intergenic | 40.0% | |
| TTTGAAAGACCTGCAACAAG+TGG | + | chr5_1:21798114-21798133 | None:intergenic | 40.0% | |
| GGGTCAATCGTTGATATGTT+TGG | + | chr5_1:21798280-21798299 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATAAGCCATCT+TGG | - | chr5_1:21798526-21798545 | Msa0723820:CDS | 40.0% |
| TGTGATAAGTCGATCCAAAC+AGG | - | chr5_1:21798652-21798671 | Msa0723820:CDS | 40.0% | |
| AGGGAAGAACACCATATACA+TGG | + | chr5_1:21798863-21798882 | None:intergenic | 40.0% | |
| ATAGACAAACAGGAAGGACA+GGG | + | chr5_1:21798882-21798901 | None:intergenic | 40.0% | |
| AATAGACAAACAGGAAGGAC+AGG | + | chr5_1:21798883-21798902 | None:intergenic | 40.0% | |
| TGGGAGGAAAATAGACAAAC+AGG | + | chr5_1:21798892-21798911 | None:intergenic | 40.0% | |
| ! | TGTTTGTCTATTTTCCTCCC+AGG | - | chr5_1:21798891-21798910 | Msa0723820:CDS | 40.0% |
| !! | CCATCGGCTTTGATAACAAT+TGG | + | chr5_1:21799016-21799035 | None:intergenic | 40.0% |
| CCAATTGTTATCAAAGCCGA+TGG | - | chr5_1:21799013-21799032 | Msa0723820:CDS | 40.0% | |
| TTCTTCAAGTGTCATGGCAA+CGG | + | chr5_1:21799062-21799081 | None:intergenic | 40.0% | |
| !! | ATGATGGTGAAGGGTGATTT+TGG | - | chr5_1:21799103-21799122 | Msa0723820:intron | 40.0% |
| AATTCCACTAGAATCAGCTC+AGG | - | chr5_1:21799210-21799229 | Msa0723820:intron | 40.0% | |
| TTCCTCGGTTAAAATAGGAG+CGG | + | chr5_1:21799299-21799318 | None:intergenic | 40.0% | |
| ! | GCTGACATTCCTTTTACTGT+TGG | + | chr5_1:21799355-21799374 | None:intergenic | 40.0% |
| GTAAAAGGAATGTCAGCAGA+AGG | - | chr5_1:21799358-21799377 | Msa0723820:intron | 40.0% | |
| ATATATGCATGGAGCACAGT+CGG | - | chr5_1:21799621-21799640 | Msa0723820:intron | 40.0% | |
| CAAGCACCAAACAATCTCAT+TGG | - | chr5_1:21799896-21799915 | Msa0723820:CDS | 40.0% | |
| ! | TTACACAGGTCTTGATGGTT+CGG | - | chr5_1:21800032-21800051 | Msa0723820:CDS | 40.0% |
| !! | GTTGTGGTAATGGCAAGTAA+AGG | - | chr5_1:21800145-21800164 | Msa0723820:intron | 40.0% |
| ATGGCAAGTAAAGGATATCC+GGG | - | chr5_1:21800154-21800173 | Msa0723820:intron | 40.0% | |
| ATATCCGGGATCATATGAGA+AGG | - | chr5_1:21800168-21800187 | Msa0723820:intron | 40.0% | |
| TATCCGGGATCATATGAGAA+GGG | - | chr5_1:21800169-21800188 | Msa0723820:intron | 40.0% | |
| GGAAGATTTATTGCAACTGG+GGG | - | chr5_1:21800277-21800296 | Msa0723820:CDS | 40.0% | |
| AAAGGGAAATGATCTCGAAG+AGG | - | chr5_1:21800321-21800340 | Msa0723820:CDS | 40.0% | |
| AAGCTGTTGAGAATGTGAAC+TGG | - | chr5_1:21800362-21800381 | Msa0723820:CDS | 40.0% | |
| !! | CACATGTTGTTTCTGAGGAA+GGG | + | chr5_1:21800425-21800444 | None:intergenic | 40.0% |
| !! | ACACATGTTGTTTCTGAGGA+AGG | + | chr5_1:21800426-21800445 | None:intergenic | 40.0% |
| GAGCATCTCCAATATAAGTG+AGG | - | chr5_1:21800526-21800545 | Msa0723820:five_prime_UTR | 40.0% | |
| ! | CTAGGTGATCTTTTATGCCT+GGG | - | chr5_1:21800663-21800682 | Msa0723820:five_prime_UTR | 40.0% |
| GGGTCTTTCTGCTCTTTAAT+AGG | + | chr5_1:21800782-21800801 | None:intergenic | 40.0% | |
| GTGACTGCGCAAGATGAAAA+GGG | + | chr5_1:21797270-21797289 | None:intergenic | 45.0% | |
| AGTGACTGCGCAAGATGAAA+AGG | + | chr5_1:21797271-21797290 | None:intergenic | 45.0% | |
| GTGACTGCGCAAGATGAAAA+GGG | + | chr5_1:21797270-21797289 | None:intergenic | 45.0% | |
| AGTGACTGCGCAAGATGAAA+AGG | + | chr5_1:21797271-21797290 | None:intergenic | 45.0% | |
| GATGCTTCTTTCTGGGTTTG+AGG | + | chr5_1:21797352-21797371 | None:intergenic | 45.0% | |
| TCTTGCACCACCTTCAATGT+TGG | - | chr5_1:21797537-21797556 | Msa0723820:CDS | 45.0% | |
| AGTGGTTTCTGAACCCAAAG+GGG | + | chr5_1:21797608-21797627 | None:intergenic | 45.0% | |
| CAGAATACAGTATCGCAGGA+CGG | + | chr5_1:21797955-21797974 | None:intergenic | 45.0% | |
| AGCACAGAATACAGTATCGC+AGG | + | chr5_1:21797959-21797978 | None:intergenic | 45.0% | |
| GATACTGTATTCTGTGCTCC+TGG | - | chr5_1:21797961-21797980 | Msa0723820:intron | 45.0% | |
| CTGCACCATCACAAACATCA+AGG | + | chr5_1:21798032-21798051 | None:intergenic | 45.0% | |
| !! | CAGCTGTAGAGTCATTTTGC+CGG | - | chr5_1:21798049-21798068 | Msa0723820:intron | 45.0% |
| !! | GAGTCATTTTGCCGGAAATG+GGG | - | chr5_1:21798057-21798076 | Msa0723820:intron | 45.0% |
| TGAAAGACCTGCAACAAGTG+GGG | + | chr5_1:21798112-21798131 | None:intergenic | 45.0% | |
| ! | AAGGCTGGAATTCCGACTTT+TGG | - | chr5_1:21798144-21798163 | Msa0723820:intron | 45.0% |
| TCTGCAGATGGACCAAAAGT+CGG | + | chr5_1:21798159-21798178 | None:intergenic | 45.0% | |
| AGAAGACAGACCTTAGCAGT+TGG | + | chr5_1:21798243-21798262 | None:intergenic | 45.0% | |
| TATATTGCCTTGCTGCGGAT+GGG | + | chr5_1:21798976-21798995 | None:intergenic | 45.0% | |
| ATATATTGCCTTGCTGCGGA+TGG | + | chr5_1:21798977-21798996 | None:intergenic | 45.0% | |
| TGTTATCAAAGCCGATGGAC+TGG | - | chr5_1:21799018-21799037 | Msa0723820:CDS | 45.0% | |
| !!! | AAGGGTGATTTTGGTTCTGC+AGG | - | chr5_1:21799112-21799131 | Msa0723820:intron | 45.0% |
| !! | GACCATAAGAGAGTTGGTGA+TGG | - | chr5_1:21799232-21799251 | Msa0723820:intron | 45.0% |
| CACCATCACCAACTCTCTTA+TGG | + | chr5_1:21799237-21799256 | None:intergenic | 45.0% | |
| TCCTCGGTTAAAATAGGAGC+GGG | + | chr5_1:21799298-21799317 | None:intergenic | 45.0% | |
| GCAGAAGGTCGTAAGTTTGT+TGG | - | chr5_1:21799373-21799392 | Msa0723820:intron | 45.0% | |
| AGAGTTGAGTGGTGTATCAC+TGG | - | chr5_1:21800099-21800118 | Msa0723820:intron | 45.0% | |
| ACTTGCCATTACCACAACCA+TGG | + | chr5_1:21800143-21800162 | None:intergenic | 45.0% | |
| GTTCCCTTCTCATATGATCC+CGG | + | chr5_1:21800175-21800194 | None:intergenic | 45.0% | |
| CAACAAGCTCAGCTTCTTCA+AGG | + | chr5_1:21800210-21800229 | None:intergenic | 45.0% | |
| ! | AATCTGAAGCAGTTCCAGCA+TGG | + | chr5_1:21800252-21800271 | None:intergenic | 45.0% |
| GGAACTGCTTCAGATTCTGA+AGG | - | chr5_1:21800256-21800275 | Msa0723820:CDS | 45.0% | |
| TTGCTGTAACCCCAAGAACA+CGG | + | chr5_1:21800303-21800322 | None:intergenic | 45.0% | |
| TGTTCTTGGGGTTACAGCAA+AGG | - | chr5_1:21800303-21800322 | Msa0723820:CDS | 45.0% | |
| GTTCTTGGGGTTACAGCAAA+GGG | - | chr5_1:21800304-21800323 | Msa0723820:CDS | 45.0% | |
| TTGAGAATGTGAACTGGCCA+GGG | - | chr5_1:21800368-21800387 | Msa0723820:CDS | 45.0% | |
| GGATTCTATCGTCGGGATAT+TGG | - | chr5_1:21800391-21800410 | Msa0723820:CDS | 45.0% | |
| TCTATCGTCGGGATATTGGT+TGG | - | chr5_1:21800395-21800414 | Msa0723820:CDS | 45.0% | |
| CCAGGCATAAAAGATCACCT+AGG | + | chr5_1:21800665-21800684 | None:intergenic | 45.0% | |
| ! | CCTAGGTGATCTTTTATGCC+TGG | - | chr5_1:21800662-21800681 | Msa0723820:five_prime_UTR | 45.0% |
| ! | ATTTTGCCGGAAATGGGGAG+TGG | - | chr5_1:21798062-21798081 | Msa0723820:intron | 50.0% |
| ! | TTTTGCCGGAAATGGGGAGT+GGG | - | chr5_1:21798063-21798082 | Msa0723820:intron | 50.0% |
| ! | GACTTTTGGTCCATCTGCAG+AGG | - | chr5_1:21798158-21798177 | Msa0723820:intron | 50.0% |
| TGAACCTTGTAGGGCCTGTT+TGG | + | chr5_1:21798669-21798688 | None:intergenic | 50.0% | |
| CACTATGGCAAAAACCTGGG+AGG | + | chr5_1:21798908-21798927 | None:intergenic | 50.0% | |
| ! | TTTTCCAGCAGCCAGTCCAT+CGG | + | chr5_1:21799032-21799051 | None:intergenic | 50.0% |
| !!! | GGTGATTTTGGTTCTGCAGG+TGG | - | chr5_1:21799115-21799134 | Msa0723820:intron | 50.0% |
| ! | AGGTGGTCGTGTCATTGTTG+AGG | - | chr5_1:21799132-21799151 | Msa0723820:intron | 50.0% |
| ! | TGGTCCTGAGCTGATTCTAG+TGG | + | chr5_1:21799217-21799236 | None:intergenic | 50.0% |
| GCTCAGGACCATAAGAGAGT+TGG | - | chr5_1:21799226-21799245 | Msa0723820:intron | 50.0% | |
| !! | AGAGTTGGTGATGGTGACAC+AGG | - | chr5_1:21799241-21799260 | Msa0723820:intron | 50.0% |
| !! | GAGTTGGTGATGGTGACACA+GGG | - | chr5_1:21799242-21799261 | Msa0723820:intron | 50.0% |
| !!! | TCCCGCTCCTATTTTAACCG+AGG | - | chr5_1:21799294-21799313 | Msa0723820:intron | 50.0% |
| ! | ATTTGGTGATCCAGAGTGCC+AGG | - | chr5_1:21799465-21799484 | Msa0723820:intron | 50.0% |
| ACTTAACTGACCTGGCACTC+TGG | + | chr5_1:21799478-21799497 | None:intergenic | 50.0% | |
| !! | ACAGGTCTTGATGGTTCGGT+TGG | - | chr5_1:21800036-21800055 | Msa0723820:CDS | 50.0% |
| ! | GGTTCGGTTGGAGTCTGATT+TGG | - | chr5_1:21800048-21800067 | Msa0723820:CDS | 50.0% |
| ! | AAGTTCTGCTTGCTGCTTGC+AGG | - | chr5_1:21800074-21800093 | Msa0723820:CDS | 50.0% |
| ! | AGTTCTGCTTGCTGCTTGCA+GGG | - | chr5_1:21800075-21800094 | Msa0723820:CDS | 50.0% |
| TGAGTGGTGTATCACTGGAC+TGG | - | chr5_1:21800104-21800123 | Msa0723820:intron | 50.0% | |
| ATCGGCCATGGTTGTGGTAA+TGG | - | chr5_1:21800135-21800154 | Msa0723820:intron | 50.0% | |
| GTTGAGAATGTGAACTGGCC+AGG | - | chr5_1:21800367-21800386 | Msa0723820:CDS | 50.0% | |
| TGAGAATGTGAACTGGCCAG+GGG | - | chr5_1:21800369-21800388 | Msa0723820:CDS | 50.0% | |
| ! | AGGGTTGGCATAGATAACCC+AGG | + | chr5_1:21800683-21800702 | None:intergenic | 50.0% |
| GTGCGTGTGAGCGATTGGAT+GGG | + | chr5_1:21797385-21797404 | None:intergenic | 55.0% | |
| TTCTGTGCTCCTGGCAATGC+AGG | - | chr5_1:21797970-21797989 | Msa0723820:intron | 55.0% | |
| AATGCAGGAATCGCCAGCTC+AGG | - | chr5_1:21797985-21798004 | Msa0723820:intron | 55.0% | |
| GCAAGTCGCATTTCCTGAGC+TGG | + | chr5_1:21798001-21798020 | None:intergenic | 55.0% | |
| CTAGTCCCACTCCCCATTTC+CGG | + | chr5_1:21798071-21798090 | None:intergenic | 55.0% | |
| !! | ATGGGGAGTGGGACTAGTTG+TGG | - | chr5_1:21798074-21798093 | Msa0723820:intron | 55.0% |
| !! | GGAGTGGGACTAGTTGTGGT+GGG | - | chr5_1:21798078-21798097 | Msa0723820:intron | 55.0% |
| CGATCCAAACAGGCCCTACA+AGG | - | chr5_1:21798662-21798681 | Msa0723820:CDS | 55.0% | |
| TTACAGACCCATCCGCAGCA+AGG | - | chr5_1:21798966-21798985 | Msa0723820:CDS | 55.0% | |
| !! | GATGGACTGGCTGCTGGAAA+AGG | - | chr5_1:21799031-21799050 | Msa0723820:intron | 55.0% |
| GGTGACACAGGGCCAAATAC+TGG | - | chr5_1:21799253-21799272 | Msa0723820:intron | 55.0% | |
| GACACAGGGCCAAATACTGG+TGG | - | chr5_1:21799256-21799275 | Msa0723820:intron | 55.0% | |
| AGGGCCAAATACTGGTGGCA+TGG | - | chr5_1:21799261-21799280 | Msa0723820:intron | 55.0% | |
| GGGCCAAATACTGGTGGCAT+GGG | - | chr5_1:21799262-21799281 | Msa0723820:intron | 55.0% | |
| GCACCCATGCCACCAGTATT+TGG | + | chr5_1:21799268-21799287 | None:intergenic | 55.0% | |
| ! | GTTCTGCTTGCTGCTTGCAG+GGG | - | chr5_1:21800076-21800095 | Msa0723820:CDS | 55.0% |
| !! | GTATCACTGGACTGGTCTCC+TGG | - | chr5_1:21800112-21800131 | Msa0723820:intron | 55.0% |
| !! | ACTGGACTGGTCTCCTGGAT+CGG | - | chr5_1:21800117-21800136 | Msa0723820:intron | 55.0% |
| GAGAATGTGAACTGGCCAGG+GGG | - | chr5_1:21800370-21800389 | Msa0723820:CDS | 55.0% | |
| CGTGCGTGTGAGCGATTGGA+TGG | + | chr5_1:21797386-21797405 | None:intergenic | 60.0% | |
| GGAACGTGCGTGTGAGCGAT+TGG | + | chr5_1:21797390-21797409 | None:intergenic | 60.0% | |
| CTGGCGATTCCTGCATTGCC+AGG | + | chr5_1:21797982-21798001 | None:intergenic | 60.0% | |
| !! | GGGAGTGGGACTAGTTGTGG+TGG | - | chr5_1:21798077-21798096 | Msa0723820:intron | 60.0% |
| CCTGCAACAAGTGGGGCTTC+AGG | + | chr5_1:21798105-21798124 | None:intergenic | 60.0% | |
| ! | CCTGAAGCCCCACTTGTTGC+AGG | - | chr5_1:21798102-21798121 | Msa0723820:intron | 60.0% |
| AGAGCAGCAGCCTCTGCAGA+TGG | + | chr5_1:21798171-21798190 | None:intergenic | 60.0% | |
| ! | GCAGAGGCTGCTGCTCTAGA+AGG | - | chr5_1:21798174-21798193 | Msa0723820:intron | 60.0% |
| !! | AAAGCCGATGGACTGGCTGC+TGG | - | chr5_1:21799025-21799044 | Msa0723820:intron | 60.0% |
| GCTTGCAGGGGAGAGTTGAG+TGG | - | chr5_1:21800088-21800107 | Msa0723820:CDS | 60.0% | |
| TCCTGGATCGGCCATGGTTG+TGG | - | chr5_1:21800129-21800148 | Msa0723820:intron | 60.0% | |
| ACCACAACCATGGCCGATCC+AGG | + | chr5_1:21800133-21800152 | None:intergenic | 60.0% | |
| CAACTGGGGGCCGTGTTCTT+GGG | - | chr5_1:21800290-21800309 | Msa0723820:CDS | 60.0% | |
| AACTGGGGGCCGTGTTCTTG+GGG | - | chr5_1:21800291-21800310 | Msa0723820:CDS | 60.0% | |
| GGCCAGGGGGATTCTATCGT+CGG | - | chr5_1:21800383-21800402 | Msa0723820:CDS | 60.0% | |
| GCCAGGGGGATTCTATCGTC+GGG | - | chr5_1:21800384-21800403 | Msa0723820:CDS | 60.0% | |
| TCCCGACGATAGAATCCCCC+TGG | + | chr5_1:21800388-21800407 | None:intergenic | 60.0% | |
| CTGGTCTCCTGGATCGGCCA+TGG | - | chr5_1:21800123-21800142 | Msa0723820:intron | 65.0% | |
| GCAACTGGGGGCCGTGTTCT+TGG | - | chr5_1:21800289-21800308 | Msa0723820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21797117 | 21800876 | 21797117 | ID=Msa0723820;Name=Msa0723820 |
| chr5_1 | mRNA | 21797117 | 21800876 | 21797117 | ID=Msa0723820-mRNA-1;Parent=Msa0723820;Name=Msa0723820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=372|0.75|0.8|1|0.75|0.6|5|420|524 |
| chr5_1 | exon | 21797117 | 21797953 | 21797117 | ID=Msa0723820-mRNA-1:exon:8283;Parent=Msa0723820-mRNA-1 |
| chr5_1 | exon | 21798507 | 21799037 | 21798507 | ID=Msa0723820-mRNA-1:exon:8282;Parent=Msa0723820-mRNA-1 |
| chr5_1 | exon | 21799742 | 21800115 | 21799742 | ID=Msa0723820-mRNA-1:exon:8281;Parent=Msa0723820-mRNA-1 |
| chr5_1 | exon | 21800207 | 21800588 | 21800207 | ID=Msa0723820-mRNA-1:exon:8280;Parent=Msa0723820-mRNA-1 |
| chr5_1 | exon | 21800634 | 21800876 | 21800634 | ID=Msa0723820-mRNA-1:exon:8279;Parent=Msa0723820-mRNA-1 |
| chr5_1 | five_prime_UTR | 21800634 | 21800876 | 21800634 | ID=Msa0723820-mRNA-1:five_prime_utr;Parent=Msa0723820-mRNA-1 |
| chr5_1 | five_prime_UTR | 21800460 | 21800588 | 21800460 | ID=Msa0723820-mRNA-1:five_prime_utr;Parent=Msa0723820-mRNA-1 |
| chr5_1 | CDS | 21800207 | 21800459 | 21800207 | ID=Msa0723820-mRNA-1:cds;Parent=Msa0723820-mRNA-1 |
| chr5_1 | CDS | 21799742 | 21800115 | 21799742 | ID=Msa0723820-mRNA-1:cds;Parent=Msa0723820-mRNA-1 |
| chr5_1 | CDS | 21798507 | 21799037 | 21798507 | ID=Msa0723820-mRNA-1:cds;Parent=Msa0723820-mRNA-1 |
| chr5_1 | CDS | 21797537 | 21797953 | 21797537 | ID=Msa0723820-mRNA-1:cds;Parent=Msa0723820-mRNA-1 |
| chr5_1 | three_prime_UTR | 21797117 | 21797536 | 21797117 | ID=Msa0723820-mRNA-1:three_prime_utr;Parent=Msa0723820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
