AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0810980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0810980 MtrunA17_Chr5g0427361 92.941 255 16 2 1 255 1 253 5.28e-152 423
Msa0810980 MtrunA17_Chr7g0255961 36.224 196 94 4 26 220 64 229 3.71e-32 118
Msa0810980 MtrunA17_Chr5g0412371 34.914 232 110 7 2 224 1 200 1.66e-30 112
Msa0810980 MtrunA17_Chr1g0198801 37.379 206 94 4 31 232 152 326 5.60e-28 109
Msa0810980 MtrunA17_Chr2g0325521 39.506 162 73 1 30 191 52 188 1.07e-24 98.6
Msa0810980 MtrunA17_Chr3g0113721 30.049 203 101 3 31 223 33 204 9.44e-23 93.2
Msa0810980 MtrunA17_Chr4g0041051 39.634 164 73 2 28 191 60 197 1.59e-21 90.5
Msa0810980 MtrunA17_Chr4g0045901 32.836 201 91 4 30 220 68 234 5.90e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0810980 AT3G25710.1 38.835 206 82 5 33 220 128 307 6.97e-31 117
Msa0810980 AT3G56770.1 36.458 192 89 3 31 220 39 199 6.02e-30 112
Msa0810980 AT1G68810.1 40.761 184 77 3 9 191 152 304 2.58e-29 114
Msa0810980 AT2G41130.1 35.233 193 97 2 28 220 58 222 1.61e-25 101
Msa0810980 AT4G38070.1 35.465 172 78 4 29 199 83 222 1.74e-22 93.2
Msa0810980 AT2G40200.1 29.412 187 98 3 33 216 59 214 4.10e-19 84.3

Find 82 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCGTAGAATCTTCTTAA+AGG 0.270050 5_3:+39960995 None:intergenic
CAACCTCACGAGCCCGTTTC+CGG 0.275304 5_3:+39960135 None:intergenic
CGCTAACAACGACGCCTTAT+CGG 0.275455 5_3:+39960634 None:intergenic
GGAGAAGGAGGTAGAAGCTT+TGG 0.321763 5_3:-39960228 Msa0810980:CDS
CGTTTCCGGCCCAACAAAAT+CGG 0.326862 5_3:+39960149 None:intergenic
AAGAAGCATGCAAGAGTCAT+AGG 0.355128 5_3:-39960901 Msa0810980:CDS
ACAAGCAATCCGTTCGGTTC+TGG 0.360599 5_3:-39960351 Msa0810980:CDS
AAAGGTGAAGGTGGTGATAA+TGG 0.377501 5_3:-39960257 Msa0810980:CDS
TTATCACCACCTTCACCTTT+AGG 0.394483 5_3:+39960260 None:intergenic
ATATGTAGTTGTTTAGTAGT+TGG 0.407115 5_3:-39960023 Msa0810980:three_prime_UTR
TGAAAGCTGTTATAGAGAAT+CGG 0.412837 5_3:-39960196 Msa0810980:CDS
CCGTTCGGTTCTGGCGAAAC+CGG 0.414266 5_3:-39960342 Msa0810980:CDS
GGAGGTAGAAGCTTTGGAAA+GGG 0.416970 5_3:-39960222 Msa0810980:CDS
GGCGTCGTTGTTAGCGGAAG+TGG 0.431203 5_3:-39960627 Msa0810980:CDS
TGAATGACCTTTGTGGTGTT+AGG 0.434067 5_3:+39960815 None:intergenic
GAAAGCTGTTATAGAGAATC+GGG 0.435771 5_3:-39960195 Msa0810980:CDS
GATTCTACGGGTTTGAGAGC+TGG 0.437215 5_3:-39960985 Msa0810980:CDS
TATTGCGGTGGTAGAGAGGA+AGG 0.446965 5_3:-39960440 Msa0810980:CDS
GACAAAGAGTGTTGTGGTGG+TGG 0.449486 5_3:-39960288 Msa0810980:CDS
GTCATCATCTCAGCTCGAAC+CGG 0.451864 5_3:+39960323 None:intergenic
TCGTCTGATTCTCCCGGAAA+AGG 0.459286 5_3:+39960476 None:intergenic
CCTCCTTTAAGAAGATTCTA+CGG 0.460188 5_3:-39960998 Msa0810980:CDS
TCAAATCAAAGAAAATATCA+TGG 0.461801 5_3:-39959996 Msa0810980:three_prime_UTR
GAGGTAGAAGCTTTGGAAAG+GGG 0.467743 5_3:-39960221 Msa0810980:CDS
GGATTGCTTGTGTTAGATCA+TGG 0.468042 5_3:+39960363 None:intergenic
GAAGAAGGAAGCTGATGAAA+TGG 0.473728 5_3:-39960585 Msa0810980:CDS
CTCCTTTAAGAAGATTCTAC+GGG 0.475979 5_3:-39960997 Msa0810980:CDS
TAATGGAAGAGAGGAGAAGG+AGG 0.476276 5_3:-39960240 Msa0810980:CDS
CTTGTTGTTGAGGAAGAATG+AGG 0.491130 5_3:-39960105 Msa0810980:CDS
ACACGTGAAACGGTCGAAGA+AGG 0.492375 5_3:-39960600 Msa0810980:CDS
TCTTCATGCAGCGGAGAACC+TGG 0.503192 5_3:-39960533 Msa0810980:CDS
CGATAAGGCGTCGTTGTTAG+CGG 0.504065 5_3:-39960633 Msa0810980:CDS
GTTTCCGGCCCAACAAAATC+GGG 0.508277 5_3:+39960150 None:intergenic
AGGAGGTAGAAGCTTTGGAA+AGG 0.513380 5_3:-39960223 Msa0810980:CDS
TGATAATGGAAGAGAGGAGA+AGG 0.516421 5_3:-39960243 Msa0810980:CDS
ATGGCGAATCGTCGCAATGA+CGG 0.517551 5_3:-39960566 Msa0810980:CDS
AAGTGGTGCAACACGTGAAA+CGG 0.520362 5_3:-39960610 Msa0810980:CDS
AGAAGCATGCAAGAGTCATA+GGG 0.522990 5_3:-39960900 Msa0810980:CDS
GGGCCGGAAACGGGCTCGTG+AGG 0.526347 5_3:-39960138 Msa0810980:CDS
ACCTGGTTCAGTTAATTCTA+CGG 0.531153 5_3:-39960516 Msa0810980:CDS
GATGGATAATAAAGACTATG+AGG 0.533000 5_3:-39960963 Msa0810980:CDS
GCTGAGATGATGACGGTTGG+AGG 0.537478 5_3:-39960314 Msa0810980:CDS
AGTGTGTTGTGAGGATCGAC+CGG 0.538414 5_3:-39960393 Msa0810980:CDS
GAGTTATTGCGGTGGTAGAG+AGG 0.542449 5_3:-39960444 Msa0810980:CDS
TTGACCGTTCCTTGTTGTTG+AGG 0.542986 5_3:-39960115 Msa0810980:CDS
AGGTGGTGATAATGGAAGAG+AGG 0.544625 5_3:-39960249 Msa0810980:CDS
GTCGCCTCGTCTGATTCTCC+CGG 0.551846 5_3:+39960470 None:intergenic
AGAAACAAAGACTACTATGA+AGG 0.553119 5_3:-39959970 Msa0810980:three_prime_UTR
GTGGAGTGGCCTAAAGGTGA+AGG 0.554899 5_3:-39960269 Msa0810980:CDS
ATTGCGGTGGTAGAGAGGAA+GGG 0.561452 5_3:-39960439 Msa0810980:CDS
TTGCGGTGGTAGAGAGGAAG+GGG 0.563178 5_3:-39960438 Msa0810980:CDS
CGAGCTGAGATGATGACGGT+TGG 0.565864 5_3:-39960317 Msa0810980:CDS
AGATGATGACGGTTGGAGGT+AGG 0.573370 5_3:-39960310 Msa0810980:CDS
AGGTTCTCCGCTGCATGAAG+AGG 0.577024 5_3:+39960535 None:intergenic
CTACGGGTTTGAGAGCTGGA+TGG 0.582407 5_3:-39960981 Msa0810980:CDS
GTGGTGGTGGAGTGGCCTAA+AGG 0.584300 5_3:-39960275 Msa0810980:CDS
CTCATTCTTCCTCAACAACA+AGG 0.601988 5_3:+39960106 None:intergenic
CCGTAGAATCTTCTTAAAGG+AGG 0.605275 5_3:+39960998 None:intergenic
TCTAACACAAGCAATCCGTT+CGG 0.605327 5_3:-39960357 Msa0810980:CDS
TGACCTTTGTGGTGTTAGGA+AGG 0.606748 5_3:+39960819 None:intergenic
TCCGTAGAATTAACTGAACC+AGG 0.607098 5_3:+39960515 None:intergenic
AATGGAATGAATGACCTTTG+TGG 0.614221 5_3:+39960808 None:intergenic
GTTAGATCATGGTTCAGACC+CGG 0.622519 5_3:+39960374 None:intergenic
GTGTGTTGTGAGGATCGACC+GGG 0.625955 5_3:-39960392 Msa0810980:CDS
GAGTCTTCCTCTTCATGCAG+CGG 0.627449 5_3:-39960542 Msa0810980:CDS
CTACGGAGGTAACTGAGACA+TGG 0.628854 5_3:-39960499 Msa0810980:CDS
AGAGTCATAGGGAAGCTGAA+AGG 0.630828 5_3:-39960889 Msa0810980:CDS
CCGGTTTCGCCAGAACCGAA+CGG 0.637182 5_3:+39960342 None:intergenic
GTAGAGAGGAAGGGGAACCA+CGG 0.640152 5_3:-39960430 Msa0810980:CDS
GAGTGGCCTAAAGGTGAAGG+TGG 0.645085 5_3:-39960266 Msa0810980:CDS
TCTTCCTCAACAACAAGGAA+CGG 0.645939 5_3:+39960111 None:intergenic
AGAGTGTTGTGGTGGTGGAG+TGG 0.646685 5_3:-39960283 Msa0810980:CDS
ACTGTCACTTTCATCCTCCG+TGG 0.656210 5_3:+39960413 None:intergenic
TAGGACAAAGAGTGTTGTGG+TGG 0.658865 5_3:-39960291 Msa0810980:CDS
GAGGCGACAGTGAGTTATTG+CGG 0.669787 5_3:-39960455 Msa0810980:CDS
GAGAGGAAGGGGAACCACGG+AGG 0.671020 5_3:-39960427 Msa0810980:CDS
AGGTAGGACAAAGAGTGTTG+TGG 0.684138 5_3:-39960294 Msa0810980:CDS
TGGTTCAGTTAATTCTACGG+AGG 0.696147 5_3:-39960513 Msa0810980:CDS
GGTTCGAGCTGAGATGATGA+CGG 0.696578 5_3:-39960321 Msa0810980:CDS
TCTCCTTCCTAACACCACAA+AGG 0.703951 5_3:-39960822 Msa0810980:intron
GAAAGTGACAGTGTGTTGTG+AGG 0.711096 5_3:-39960402 Msa0810980:CDS
GCGACAGTGAGTTATTGCGG+TGG 0.734204 5_3:-39960452 Msa0810980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTGTTTCTTATAAAAA+AGG + chr5_3:39960295-39960314 None:intergenic 15.0%
!!! AATAAAAATATCTGTTTTAG+TGG - chr5_3:39960318-39960337 Msa0810980:CDS 15.0%
!!! TCATTTGTTTCTTATAAAAA+AGG + chr5_3:39960295-39960314 None:intergenic 15.0%
!!! AATAAAAATATCTGTTTTAG+TGG - chr5_3:39960318-39960337 Msa0810980:CDS 15.0%
!! TCAAATCAAAGAAAATATCA+TGG - chr5_3:39961033-39961052 Msa0810980:five_prime_UTR 20.0%
!! TCAAATCAAAGAAAATATCA+TGG - chr5_3:39961033-39961052 Msa0810980:five_prime_UTR 20.0%
! AAGAATGTGAAGTTATGAAA+TGG + chr5_3:39960247-39960266 None:intergenic 25.0%
!!! AAAAATATCTGTTTTAGTGG+TGG - chr5_3:39960321-39960340 Msa0810980:CDS 25.0%
! ATATGTAGTTGTTTAGTAGT+TGG - chr5_3:39961006-39961025 Msa0810980:CDS 25.0%
! AAGAATGTGAAGTTATGAAA+TGG + chr5_3:39960247-39960266 None:intergenic 25.0%
!!! AAAAATATCTGTTTTAGTGG+TGG - chr5_3:39960321-39960340 Msa0810980:CDS 25.0%
! ATATGTAGTTGTTTAGTAGT+TGG - chr5_3:39961006-39961025 Msa0810980:CDS 25.0%
!!! TTCTTTTCTTCTTGGTTCTA+TGG + chr5_3:39959985-39960004 None:intergenic 30.0%
! TCTTCTTCTTCTTTTCTTCT+TGG + chr5_3:39959993-39960012 None:intergenic 30.0%
GATGGATAATAAAGACTATG+AGG - chr5_3:39960066-39960085 Msa0810980:three_prime_UTR 30.0%
TGTGAAGTTATGAAATGGAA+TGG + chr5_3:39960242-39960261 None:intergenic 30.0%
TCTTATAAAAAAGGACCTGA+GGG + chr5_3:39960286-39960305 None:intergenic 30.0%
TTCTTATAAAAAAGGACCTG+AGG + chr5_3:39960287-39960306 None:intergenic 30.0%
TGAAAGCTGTTATAGAGAAT+CGG - chr5_3:39960833-39960852 Msa0810980:CDS 30.0%
! ACTTTTGCTAACACATGATT+AGG - chr5_3:39960947-39960966 Msa0810980:CDS 30.0%
AGAAACAAAGACTACTATGA+AGG - chr5_3:39961059-39961078 Msa0810980:five_prime_UTR 30.0%
!!! TTCTTTTCTTCTTGGTTCTA+TGG + chr5_3:39959985-39960004 None:intergenic 30.0%
! TCTTCTTCTTCTTTTCTTCT+TGG + chr5_3:39959993-39960012 None:intergenic 30.0%
GATGGATAATAAAGACTATG+AGG - chr5_3:39960066-39960085 Msa0810980:three_prime_UTR 30.0%
TGTGAAGTTATGAAATGGAA+TGG + chr5_3:39960242-39960261 None:intergenic 30.0%
TCTTATAAAAAAGGACCTGA+GGG + chr5_3:39960286-39960305 None:intergenic 30.0%
TTCTTATAAAAAAGGACCTG+AGG + chr5_3:39960287-39960306 None:intergenic 30.0%
TGAAAGCTGTTATAGAGAAT+CGG - chr5_3:39960833-39960852 Msa0810980:CDS 30.0%
! ACTTTTGCTAACACATGATT+AGG - chr5_3:39960947-39960966 Msa0810980:CDS 30.0%
AGAAACAAAGACTACTATGA+AGG - chr5_3:39961059-39961078 Msa0810980:five_prime_UTR 30.0%
! CCTCCTTTAAGAAGATTCTA+CGG - chr5_3:39960031-39960050 Msa0810980:three_prime_UTR 35.0%
! CTCCTTTAAGAAGATTCTAC+GGG - chr5_3:39960032-39960051 Msa0810980:three_prime_UTR 35.0%
AACCCGTAGAATCTTCTTAA+AGG + chr5_3:39960037-39960056 None:intergenic 35.0%
AATGGAATGAATGACCTTTG+TGG + chr5_3:39960224-39960243 None:intergenic 35.0%
! ATTTTATGTGCAGTCCGATA+AGG - chr5_3:39960381-39960400 Msa0810980:CDS 35.0%
ACCTGGTTCAGTTAATTCTA+CGG - chr5_3:39960513-39960532 Msa0810980:CDS 35.0%
GAAAGCTGTTATAGAGAATC+GGG - chr5_3:39960834-39960853 Msa0810980:CDS 35.0%
! CCTCCTTTAAGAAGATTCTA+CGG - chr5_3:39960031-39960050 Msa0810980:three_prime_UTR 35.0%
! CTCCTTTAAGAAGATTCTAC+GGG - chr5_3:39960032-39960051 Msa0810980:three_prime_UTR 35.0%
AACCCGTAGAATCTTCTTAA+AGG + chr5_3:39960037-39960056 None:intergenic 35.0%
AATGGAATGAATGACCTTTG+TGG + chr5_3:39960224-39960243 None:intergenic 35.0%
! ATTTTATGTGCAGTCCGATA+AGG - chr5_3:39960381-39960400 Msa0810980:CDS 35.0%
ACCTGGTTCAGTTAATTCTA+CGG - chr5_3:39960513-39960532 Msa0810980:CDS 35.0%
GAAAGCTGTTATAGAGAATC+GGG - chr5_3:39960834-39960853 Msa0810980:CDS 35.0%
CCGTAGAATCTTCTTAAAGG+AGG + chr5_3:39960034-39960053 None:intergenic 40.0%
! AAGAAGCATGCAAGAGTCAT+AGG - chr5_3:39960128-39960147 Msa0810980:CDS 40.0%
! AGAAGCATGCAAGAGTCATA+GGG - chr5_3:39960129-39960148 Msa0810980:CDS 40.0%
TGAATGACCTTTGTGGTGTT+AGG + chr5_3:39960217-39960236 None:intergenic 40.0%
TGCAAAAATACTAGTCCCTC+AGG - chr5_3:39960268-39960287 Msa0810980:CDS 40.0%
GAAGAAGGAAGCTGATGAAA+TGG - chr5_3:39960444-39960463 Msa0810980:CDS 40.0%
TCCGTAGAATTAACTGAACC+AGG + chr5_3:39960517-39960536 None:intergenic 40.0%
TGGTTCAGTTAATTCTACGG+AGG - chr5_3:39960516-39960535 Msa0810980:CDS 40.0%
GGATTGCTTGTGTTAGATCA+TGG + chr5_3:39960669-39960688 None:intergenic 40.0%
TCTAACACAAGCAATCCGTT+CGG - chr5_3:39960672-39960691 Msa0810980:intron 40.0%
TTATCACCACCTTCACCTTT+AGG + chr5_3:39960772-39960791 None:intergenic 40.0%
AAAGGTGAAGGTGGTGATAA+TGG - chr5_3:39960772-39960791 Msa0810980:intron 40.0%
!! TGATAATGGAAGAGAGGAGA+AGG - chr5_3:39960786-39960805 Msa0810980:intron 40.0%
! TATAGAGAATCGGGCTTTTG+TGG - chr5_3:39960843-39960862 Msa0810980:CDS 40.0%
TCTTCCTCAACAACAAGGAA+CGG + chr5_3:39960921-39960940 None:intergenic 40.0%
CTCATTCTTCCTCAACAACA+AGG + chr5_3:39960926-39960945 None:intergenic 40.0%
!! CTTGTTGTTGAGGAAGAATG+AGG - chr5_3:39960924-39960943 Msa0810980:CDS 40.0%
CCGTAGAATCTTCTTAAAGG+AGG + chr5_3:39960034-39960053 None:intergenic 40.0%
! AAGAAGCATGCAAGAGTCAT+AGG - chr5_3:39960128-39960147 Msa0810980:CDS 40.0%
! AGAAGCATGCAAGAGTCATA+GGG - chr5_3:39960129-39960148 Msa0810980:CDS 40.0%
TGAATGACCTTTGTGGTGTT+AGG + chr5_3:39960217-39960236 None:intergenic 40.0%
TGCAAAAATACTAGTCCCTC+AGG - chr5_3:39960268-39960287 Msa0810980:CDS 40.0%
GAAGAAGGAAGCTGATGAAA+TGG - chr5_3:39960444-39960463 Msa0810980:CDS 40.0%
TCCGTAGAATTAACTGAACC+AGG + chr5_3:39960517-39960536 None:intergenic 40.0%
TGGTTCAGTTAATTCTACGG+AGG - chr5_3:39960516-39960535 Msa0810980:CDS 40.0%
GGATTGCTTGTGTTAGATCA+TGG + chr5_3:39960669-39960688 None:intergenic 40.0%
TCTAACACAAGCAATCCGTT+CGG - chr5_3:39960672-39960691 Msa0810980:intron 40.0%
TTATCACCACCTTCACCTTT+AGG + chr5_3:39960772-39960791 None:intergenic 40.0%
AAAGGTGAAGGTGGTGATAA+TGG - chr5_3:39960772-39960791 Msa0810980:intron 40.0%
!! TGATAATGGAAGAGAGGAGA+AGG - chr5_3:39960786-39960805 Msa0810980:intron 40.0%
! TATAGAGAATCGGGCTTTTG+TGG - chr5_3:39960843-39960862 Msa0810980:CDS 40.0%
TCTTCCTCAACAACAAGGAA+CGG + chr5_3:39960921-39960940 None:intergenic 40.0%
CTCATTCTTCCTCAACAACA+AGG + chr5_3:39960926-39960945 None:intergenic 40.0%
!! CTTGTTGTTGAGGAAGAATG+AGG - chr5_3:39960924-39960943 Msa0810980:CDS 40.0%
AGAGTCATAGGGAAGCTGAA+AGG - chr5_3:39960140-39960159 Msa0810980:CDS 45.0%
TCTCCTTCCTAACACCACAA+AGG - chr5_3:39960207-39960226 Msa0810980:CDS 45.0%
! TGACCTTTGTGGTGTTAGGA+AGG + chr5_3:39960213-39960232 None:intergenic 45.0%
!! TTTAGTGGTGGCTCTGAACA+CGG - chr5_3:39960333-39960352 Msa0810980:CDS 45.0%
AAGTGGTGCAACACGTGAAA+CGG - chr5_3:39960419-39960438 Msa0810980:CDS 45.0%
! AACTGAGACATGGCCTTTTC+CGG - chr5_3:39960540-39960559 Msa0810980:CDS 45.0%
GAAAGTGACAGTGTGTTGTG+AGG - chr5_3:39960627-39960646 Msa0810980:CDS 45.0%
GTTAGATCATGGTTCAGACC+CGG + chr5_3:39960658-39960677 None:intergenic 45.0%
!! AGGTAGGACAAAGAGTGTTG+TGG - chr5_3:39960735-39960754 Msa0810980:intron 45.0%
!! TAGGACAAAGAGTGTTGTGG+TGG - chr5_3:39960738-39960757 Msa0810980:intron 45.0%
!! AGGTGGTGATAATGGAAGAG+AGG - chr5_3:39960780-39960799 Msa0810980:intron 45.0%
TAATGGAAGAGAGGAGAAGG+AGG - chr5_3:39960789-39960808 Msa0810980:intron 45.0%
!! AGGAGGTAGAAGCTTTGGAA+AGG - chr5_3:39960806-39960825 Msa0810980:intron 45.0%
!! GGAGGTAGAAGCTTTGGAAA+GGG - chr5_3:39960807-39960826 Msa0810980:intron 45.0%
!! GAGGTAGAAGCTTTGGAAAG+GGG - chr5_3:39960808-39960827 Msa0810980:intron 45.0%
! AATCGGGCTTTTGTGGATTC+TGG - chr5_3:39960850-39960869 Msa0810980:CDS 45.0%
! ATCGGGCTTTTGTGGATTCT+GGG - chr5_3:39960851-39960870 Msa0810980:CDS 45.0%
! GCTTTTGTGGATTCTGGGTT+GGG - chr5_3:39960856-39960875 Msa0810980:CDS 45.0%
!! TTGACCGTTCCTTGTTGTTG+AGG - chr5_3:39960914-39960933 Msa0810980:CDS 45.0%
AGAGTCATAGGGAAGCTGAA+AGG - chr5_3:39960140-39960159 Msa0810980:CDS 45.0%
TCTCCTTCCTAACACCACAA+AGG - chr5_3:39960207-39960226 Msa0810980:CDS 45.0%
! TGACCTTTGTGGTGTTAGGA+AGG + chr5_3:39960213-39960232 None:intergenic 45.0%
!! TTTAGTGGTGGCTCTGAACA+CGG - chr5_3:39960333-39960352 Msa0810980:CDS 45.0%
AAGTGGTGCAACACGTGAAA+CGG - chr5_3:39960419-39960438 Msa0810980:CDS 45.0%
! AACTGAGACATGGCCTTTTC+CGG - chr5_3:39960540-39960559 Msa0810980:CDS 45.0%
GAAAGTGACAGTGTGTTGTG+AGG - chr5_3:39960627-39960646 Msa0810980:CDS 45.0%
GTTAGATCATGGTTCAGACC+CGG + chr5_3:39960658-39960677 None:intergenic 45.0%
!! AGGTAGGACAAAGAGTGTTG+TGG - chr5_3:39960735-39960754 Msa0810980:intron 45.0%
!! TAGGACAAAGAGTGTTGTGG+TGG - chr5_3:39960738-39960757 Msa0810980:intron 45.0%
!! AGGTGGTGATAATGGAAGAG+AGG - chr5_3:39960780-39960799 Msa0810980:intron 45.0%
TAATGGAAGAGAGGAGAAGG+AGG - chr5_3:39960789-39960808 Msa0810980:intron 45.0%
!! AGGAGGTAGAAGCTTTGGAA+AGG - chr5_3:39960806-39960825 Msa0810980:intron 45.0%
!! GGAGGTAGAAGCTTTGGAAA+GGG - chr5_3:39960807-39960826 Msa0810980:intron 45.0%
!! GAGGTAGAAGCTTTGGAAAG+GGG - chr5_3:39960808-39960827 Msa0810980:intron 45.0%
! AATCGGGCTTTTGTGGATTC+TGG - chr5_3:39960850-39960869 Msa0810980:CDS 45.0%
! ATCGGGCTTTTGTGGATTCT+GGG - chr5_3:39960851-39960870 Msa0810980:CDS 45.0%
! GCTTTTGTGGATTCTGGGTT+GGG - chr5_3:39960856-39960875 Msa0810980:CDS 45.0%
!! TTGACCGTTCCTTGTTGTTG+AGG - chr5_3:39960914-39960933 Msa0810980:CDS 45.0%
GATTCTACGGGTTTGAGAGC+TGG - chr5_3:39960044-39960063 Msa0810980:three_prime_UTR 50.0%
CGCTAACAACGACGCCTTAT+CGG + chr5_3:39960398-39960417 None:intergenic 50.0%
!! CGATAAGGCGTCGTTGTTAG+CGG - chr5_3:39960396-39960415 Msa0810980:CDS 50.0%
ACACGTGAAACGGTCGAAGA+AGG - chr5_3:39960429-39960448 Msa0810980:CDS 50.0%
ATGGCGAATCGTCGCAATGA+CGG - chr5_3:39960463-39960482 Msa0810980:CDS 50.0%
GAGTCTTCCTCTTCATGCAG+CGG - chr5_3:39960487-39960506 Msa0810980:CDS 50.0%
CTACGGAGGTAACTGAGACA+TGG - chr5_3:39960530-39960549 Msa0810980:CDS 50.0%
! ACTGAGACATGGCCTTTTCC+GGG - chr5_3:39960541-39960560 Msa0810980:CDS 50.0%
TCGTCTGATTCTCCCGGAAA+AGG + chr5_3:39960556-39960575 None:intergenic 50.0%
! TTTTCCGGGAGAATCAGACG+AGG - chr5_3:39960555-39960574 Msa0810980:CDS 50.0%
GAGGCGACAGTGAGTTATTG+CGG - chr5_3:39960574-39960593 Msa0810980:CDS 50.0%
GAGTTATTGCGGTGGTAGAG+AGG - chr5_3:39960585-39960604 Msa0810980:CDS 50.0%
TATTGCGGTGGTAGAGAGGA+AGG - chr5_3:39960589-39960608 Msa0810980:CDS 50.0%
ATTGCGGTGGTAGAGAGGAA+GGG - chr5_3:39960590-39960609 Msa0810980:CDS 50.0%
!! ACTGTCACTTTCATCCTCCG+TGG + chr5_3:39960619-39960638 None:intergenic 50.0%
AGTGTGTTGTGAGGATCGAC+CGG - chr5_3:39960636-39960655 Msa0810980:CDS 50.0%
ACAAGCAATCCGTTCGGTTC+TGG - chr5_3:39960678-39960697 Msa0810980:intron 50.0%
GTCATCATCTCAGCTCGAAC+CGG + chr5_3:39960709-39960728 None:intergenic 50.0%
GGTTCGAGCTGAGATGATGA+CGG - chr5_3:39960708-39960727 Msa0810980:intron 50.0%
!! AGATGATGACGGTTGGAGGT+AGG - chr5_3:39960719-39960738 Msa0810980:intron 50.0%
!! GACAAAGAGTGTTGTGGTGG+TGG - chr5_3:39960741-39960760 Msa0810980:intron 50.0%
GGAGAAGGAGGTAGAAGCTT+TGG - chr5_3:39960801-39960820 Msa0810980:intron 50.0%
! GGCTTTTGTGGATTCTGGGT+TGG - chr5_3:39960855-39960874 Msa0810980:CDS 50.0%
GTTTCCGGCCCAACAAAATC+GGG + chr5_3:39960882-39960901 None:intergenic 50.0%
CGTTTCCGGCCCAACAAAAT+CGG + chr5_3:39960883-39960902 None:intergenic 50.0%
! CGATTTTGTTGGGCCGGAAA+CGG - chr5_3:39960881-39960900 Msa0810980:CDS 50.0%
! GATTTTGTTGGGCCGGAAAC+GGG - chr5_3:39960882-39960901 Msa0810980:CDS 50.0%
GATTCTACGGGTTTGAGAGC+TGG - chr5_3:39960044-39960063 Msa0810980:three_prime_UTR 50.0%
CGCTAACAACGACGCCTTAT+CGG + chr5_3:39960398-39960417 None:intergenic 50.0%
!! CGATAAGGCGTCGTTGTTAG+CGG - chr5_3:39960396-39960415 Msa0810980:CDS 50.0%
ACACGTGAAACGGTCGAAGA+AGG - chr5_3:39960429-39960448 Msa0810980:CDS 50.0%
ATGGCGAATCGTCGCAATGA+CGG - chr5_3:39960463-39960482 Msa0810980:CDS 50.0%
GAGTCTTCCTCTTCATGCAG+CGG - chr5_3:39960487-39960506 Msa0810980:CDS 50.0%
CTACGGAGGTAACTGAGACA+TGG - chr5_3:39960530-39960549 Msa0810980:CDS 50.0%
! ACTGAGACATGGCCTTTTCC+GGG - chr5_3:39960541-39960560 Msa0810980:CDS 50.0%
TCGTCTGATTCTCCCGGAAA+AGG + chr5_3:39960556-39960575 None:intergenic 50.0%
! TTTTCCGGGAGAATCAGACG+AGG - chr5_3:39960555-39960574 Msa0810980:CDS 50.0%
GAGGCGACAGTGAGTTATTG+CGG - chr5_3:39960574-39960593 Msa0810980:CDS 50.0%
GAGTTATTGCGGTGGTAGAG+AGG - chr5_3:39960585-39960604 Msa0810980:CDS 50.0%
TATTGCGGTGGTAGAGAGGA+AGG - chr5_3:39960589-39960608 Msa0810980:CDS 50.0%
ATTGCGGTGGTAGAGAGGAA+GGG - chr5_3:39960590-39960609 Msa0810980:CDS 50.0%
!! ACTGTCACTTTCATCCTCCG+TGG + chr5_3:39960619-39960638 None:intergenic 50.0%
AGTGTGTTGTGAGGATCGAC+CGG - chr5_3:39960636-39960655 Msa0810980:CDS 50.0%
ACAAGCAATCCGTTCGGTTC+TGG - chr5_3:39960678-39960697 Msa0810980:intron 50.0%
GTCATCATCTCAGCTCGAAC+CGG + chr5_3:39960709-39960728 None:intergenic 50.0%
GGTTCGAGCTGAGATGATGA+CGG - chr5_3:39960708-39960727 Msa0810980:intron 50.0%
!! AGATGATGACGGTTGGAGGT+AGG - chr5_3:39960719-39960738 Msa0810980:intron 50.0%
!! GACAAAGAGTGTTGTGGTGG+TGG - chr5_3:39960741-39960760 Msa0810980:intron 50.0%
GGAGAAGGAGGTAGAAGCTT+TGG - chr5_3:39960801-39960820 Msa0810980:intron 50.0%
! GGCTTTTGTGGATTCTGGGT+TGG - chr5_3:39960855-39960874 Msa0810980:CDS 50.0%
GTTTCCGGCCCAACAAAATC+GGG + chr5_3:39960882-39960901 None:intergenic 50.0%
CGTTTCCGGCCCAACAAAAT+CGG + chr5_3:39960883-39960902 None:intergenic 50.0%
! CGATTTTGTTGGGCCGGAAA+CGG - chr5_3:39960881-39960900 Msa0810980:CDS 50.0%
! GATTTTGTTGGGCCGGAAAC+GGG - chr5_3:39960882-39960901 Msa0810980:CDS 50.0%
CTACGGGTTTGAGAGCTGGA+TGG - chr5_3:39960048-39960067 Msa0810980:three_prime_UTR 55.0%
AGGTTCTCCGCTGCATGAAG+AGG + chr5_3:39960497-39960516 None:intergenic 55.0%
TCTTCATGCAGCGGAGAACC+TGG - chr5_3:39960496-39960515 Msa0810980:CDS 55.0%
GCGACAGTGAGTTATTGCGG+TGG - chr5_3:39960577-39960596 Msa0810980:CDS 55.0%
TTGCGGTGGTAGAGAGGAAG+GGG - chr5_3:39960591-39960610 Msa0810980:CDS 55.0%
GTAGAGAGGAAGGGGAACCA+CGG - chr5_3:39960599-39960618 Msa0810980:CDS 55.0%
GTGTGTTGTGAGGATCGACC+GGG - chr5_3:39960637-39960656 Msa0810980:CDS 55.0%
!! CGAGCTGAGATGATGACGGT+TGG - chr5_3:39960712-39960731 Msa0810980:intron 55.0%
!! GCTGAGATGATGACGGTTGG+AGG - chr5_3:39960715-39960734 Msa0810980:intron 55.0%
!! AGAGTGTTGTGGTGGTGGAG+TGG - chr5_3:39960746-39960765 Msa0810980:intron 55.0%
GTGGAGTGGCCTAAAGGTGA+AGG - chr5_3:39960760-39960779 Msa0810980:intron 55.0%
GAGTGGCCTAAAGGTGAAGG+TGG - chr5_3:39960763-39960782 Msa0810980:intron 55.0%
!! TGGGTTGGGCCCGATTTTGT+TGG - chr5_3:39960870-39960889 Msa0810980:CDS 55.0%
! GGGTTGGGCCCGATTTTGTT+GGG - chr5_3:39960871-39960890 Msa0810980:CDS 55.0%
CTACGGGTTTGAGAGCTGGA+TGG - chr5_3:39960048-39960067 Msa0810980:three_prime_UTR 55.0%
AGGTTCTCCGCTGCATGAAG+AGG + chr5_3:39960497-39960516 None:intergenic 55.0%
TCTTCATGCAGCGGAGAACC+TGG - chr5_3:39960496-39960515 Msa0810980:CDS 55.0%
GCGACAGTGAGTTATTGCGG+TGG - chr5_3:39960577-39960596 Msa0810980:CDS 55.0%
TTGCGGTGGTAGAGAGGAAG+GGG - chr5_3:39960591-39960610 Msa0810980:CDS 55.0%
GTAGAGAGGAAGGGGAACCA+CGG - chr5_3:39960599-39960618 Msa0810980:CDS 55.0%
GTGTGTTGTGAGGATCGACC+GGG - chr5_3:39960637-39960656 Msa0810980:CDS 55.0%
!! CGAGCTGAGATGATGACGGT+TGG - chr5_3:39960712-39960731 Msa0810980:intron 55.0%
!! GCTGAGATGATGACGGTTGG+AGG - chr5_3:39960715-39960734 Msa0810980:intron 55.0%
!! AGAGTGTTGTGGTGGTGGAG+TGG - chr5_3:39960746-39960765 Msa0810980:intron 55.0%
GTGGAGTGGCCTAAAGGTGA+AGG - chr5_3:39960760-39960779 Msa0810980:intron 55.0%
GAGTGGCCTAAAGGTGAAGG+TGG - chr5_3:39960763-39960782 Msa0810980:intron 55.0%
!! TGGGTTGGGCCCGATTTTGT+TGG - chr5_3:39960870-39960889 Msa0810980:CDS 55.0%
! GGGTTGGGCCCGATTTTGTT+GGG - chr5_3:39960871-39960890 Msa0810980:CDS 55.0%
GGCGTCGTTGTTAGCGGAAG+TGG - chr5_3:39960402-39960421 Msa0810980:CDS 60.0%
GTCGCCTCGTCTGATTCTCC+CGG + chr5_3:39960562-39960581 None:intergenic 60.0%
CCGGTTTCGCCAGAACCGAA+CGG + chr5_3:39960690-39960709 None:intergenic 60.0%
! CCGTTCGGTTCTGGCGAAAC+CGG - chr5_3:39960687-39960706 Msa0810980:intron 60.0%
!! GTGGTGGTGGAGTGGCCTAA+AGG - chr5_3:39960754-39960773 Msa0810980:intron 60.0%
! TGGGCCCGATTTTGTTGGGC+CGG - chr5_3:39960875-39960894 Msa0810980:CDS 60.0%
CAACCTCACGAGCCCGTTTC+CGG + chr5_3:39960897-39960916 None:intergenic 60.0%
GGCGTCGTTGTTAGCGGAAG+TGG - chr5_3:39960402-39960421 Msa0810980:CDS 60.0%
GTCGCCTCGTCTGATTCTCC+CGG + chr5_3:39960562-39960581 None:intergenic 60.0%
CCGGTTTCGCCAGAACCGAA+CGG + chr5_3:39960690-39960709 None:intergenic 60.0%
! CCGTTCGGTTCTGGCGAAAC+CGG - chr5_3:39960687-39960706 Msa0810980:intron 60.0%
!! GTGGTGGTGGAGTGGCCTAA+AGG - chr5_3:39960754-39960773 Msa0810980:intron 60.0%
! TGGGCCCGATTTTGTTGGGC+CGG - chr5_3:39960875-39960894 Msa0810980:CDS 60.0%
CAACCTCACGAGCCCGTTTC+CGG + chr5_3:39960897-39960916 None:intergenic 60.0%
GAGAGGAAGGGGAACCACGG+AGG - chr5_3:39960602-39960621 Msa0810980:CDS 65.0%
GAGAGGAAGGGGAACCACGG+AGG - chr5_3:39960602-39960621 Msa0810980:CDS 65.0%
! GGGCCGGAAACGGGCTCGTG+AGG - chr5_3:39960891-39960910 Msa0810980:CDS 75.0%
! GGGCCGGAAACGGGCTCGTG+AGG - chr5_3:39960891-39960910 Msa0810980:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 39959923 39961128 39959923 ID=Msa0810980;Name=Msa0810980
chr5_3 mRNA 39959923 39961128 39959923 ID=Msa0810980-mRNA-1;Parent=Msa0810980;Name=Msa0810980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=102|1|1|1|1|1|2|171|255
chr5_3 exon 39959923 39960657 39959923 ID=Msa0810980-mRNA-1:exon:12177;Parent=Msa0810980-mRNA-1
chr5_3 exon 39960823 39961128 39960823 ID=Msa0810980-mRNA-1:exon:12176;Parent=Msa0810980-mRNA-1
chr5_3 five_prime_UTR 39961027 39961128 39961027 ID=Msa0810980-mRNA-1:five_prime_utr;Parent=Msa0810980-mRNA-1
chr5_3 CDS 39960823 39961026 39960823 ID=Msa0810980-mRNA-1:cds;Parent=Msa0810980-mRNA-1
chr5_3 CDS 39960094 39960657 39960094 ID=Msa0810980-mRNA-1:cds;Parent=Msa0810980-mRNA-1
chr5_3 three_prime_UTR 39959923 39960093 39959923 ID=Msa0810980-mRNA-1:three_prime_utr;Parent=Msa0810980-mRNA-1
Gene Sequence

>Msa0810980

ATGCTTCCTCCTTTAAGAAGATTCTACGGGTTTGAGAGCTGGATGGATAATAAAGACTATGAGGAAATCAACTGTGACAATTCAAAATCTGAGAGAAAATCAAAAGAAGCATGCAAGAGTCATAGGGAAGCTGAAAGGAGACGCAGACAGAGAATCAACGCTCATCTCAACACTCTTCGCTCTCTCCTTCCTAACACCACAAAGTCCGATAAGGCGTCGTTGTTAGCGGAAGTGGTGCAACACGTGAAACGGTCGAAGAAGGAAGCTGATGAAATGGCGAATCGTCGCAATGACGGAGAGTCTTCCTCTTCATGCAGCGGAGAACCTGGTTCAGTTAATTCTACGGAGGTAACTGAGACATGGCCTTTTCCGGGAGAATCAGACGAGGCGACAGTGAGTTATTGCGGTGGTAGAGAGGAAGGGGAACCACGGAGGATGAAAGTGACAGTGTGTTGTGAGGATCGACCGGGTCTGAACCATGATCTAACACAAGCAATCCGTTCGGTTCTGGCGAAACCGGTTCGAGCTGAGATGATGACGGTTGGAGGTAGGACAAAGAGTGTTGTGGTGGTGGAGTGGCCTAAAGGTGAAGGTGGTGATAATGGAAGAGAGGAGAAGGAGGTAGAAGCTTTGGAAAGGGGTTTGAAAGCTGTTATAGAGAATCGGGCTTTTGTGGATTCTGGGTTGGGCCCGATTTTGTTGGGCCGGAAACGGGCTCGTGAGGTTGACCGTTCCTTGTTGTTGAGGAAGAATGAGGACTTTTGCTAA
Protein sequence

>Msa0810980

MLPPLRRFYGFESWMDNKDYEEINCDNSKSERKSKEACKSHREAERRRRQRINAHLNTLRSLLPNTTKSDKASLLAEVVQHVKRSKKEADEMANRRNDGESSSSCSGEPGSVNSTEVTETWPFPGESDEATVSYCGGREEGEPRRMKVTVCCEDRPGLNHDLTQAIRSVLAKPVRAEMMTVGGRTKSVVVVEWPKGEGGDNGREEKEVEALERGLKAVIENRAFVDSGLGPILLGRKRAREVDRSLLLRKNEDFC*