AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378970 MtrunA17_Chr3g0132011 96.780 528 12 4 1 526 1 525 0.0 986
Msa0378970 MtrunA17_Chr3g0102341 40.334 419 215 9 93 489 371 776 2.48e-67 232
Msa0378970 MtrunA17_Chr5g0446481 51.613 186 82 4 93 277 397 575 1.60e-53 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378970 AT3G48710.1 48.970 437 191 12 69 497 30 442 7.09e-112 340
Msa0378970 AT5G63550.2 49.043 418 173 10 94 497 94 485 7.31e-99 309
Msa0378970 AT5G63550.1 48.558 416 177 9 94 497 94 484 1.42e-97 306
Msa0378970 AT5G55660.1 52.632 171 73 4 93 261 323 487 5.94e-46 172
Msa0378970 AT4G26630.2 43.509 285 128 5 12 268 207 486 2.56e-42 162
Msa0378970 AT4G26630.1 43.509 285 128 5 12 268 207 486 2.56e-42 162

Find 140 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAGCTGTTGGAATTTC+TGG 0.096765 3_1:-79862469 Msa0378970:CDS
TTCACACTACTCTTGTTTAT+TGG 0.122133 3_1:+79862598 None:intergenic
CCTATTCTACTTCTAATTCT+AGG 0.171908 3_1:-79864779 Msa0378970:five_prime_UTR
GCAATGTTAAATTTATTTAT+TGG 0.173383 3_1:-79859629 Msa0378970:three_prime_UTR
TTCTGGTTTGGGTTCATCTT+TGG 0.192982 3_1:+79864647 None:intergenic
AAAGCTTTGGTAGGTATATT+TGG 0.219175 3_1:-79859821 Msa0378970:three_prime_UTR
TTCAACTTCTTCTTCTGGTT+TGG 0.223760 3_1:+79864635 None:intergenic
TATGATAGATGCTCTAAATT+AGG 0.236927 3_1:-79859779 Msa0378970:three_prime_UTR
TTCAATTATCAGTCCTTTAC+TGG 0.245498 3_1:+79864329 None:intergenic
ATGTTGACAGGTAAACATTT+TGG 0.262420 3_1:-79860109 Msa0378970:intron
AAATGACAAATCTGTAATAA+AGG 0.263279 3_1:+79859719 None:intergenic
TCAACTTCTTCTTCTGGTTT+GGG 0.267047 3_1:+79864636 None:intergenic
CAATGTTAAATTTATTTATT+GGG 0.289715 3_1:-79859628 Msa0378970:three_prime_UTR
GTTACTTCAACTTCTTCTTC+TGG 0.304574 3_1:+79864630 None:intergenic
GAACCTTCACCTTCGAAGTT+TGG 0.308498 3_1:-79864363 Msa0378970:CDS
TAACATTGCTCTAAATTAGA+AGG 0.312028 3_1:+79859643 None:intergenic
AGAATAGGAAAGATGAGATT+TGG 0.329354 3_1:+79864794 None:intergenic
GGAAAGATGAGATTTGGAAT+TGG 0.340647 3_1:+79864800 None:intergenic
ACCGTCTTCCTTTCCCTAGT+TGG 0.341819 3_1:+79864399 None:intergenic
AACTGCAAAGGCTGCGGTTA+AGG 0.346132 3_1:-79860712 Msa0378970:CDS
GAAAGATGAGATTTGGAATT+GGG 0.348178 3_1:+79864801 None:intergenic
AATGACAAATCTGTAATAAA+GGG 0.349283 3_1:+79859720 None:intergenic
GAAGTACTCTTGTGAGCTTT+TGG 0.351465 3_1:+79860969 None:intergenic
CACTGCAACATCTTCATCTT+GGG 0.358494 3_1:+79861046 None:intergenic
GGAAGATGCTGGTGAGAAGA+AGG 0.360035 3_1:-79864481 Msa0378970:CDS
TAAGGAAGTAGATTTCAATA+AGG 0.361423 3_1:-79860327 Msa0378970:intron
TCTTCCCAAACAGTATACTA+TGG 0.363218 3_1:+79863027 None:intergenic
TTCATCATCATCATCTTTCT+CGG 0.365632 3_1:+79864545 None:intergenic
CCACTGCAACATCTTCATCT+TGG 0.375147 3_1:+79861045 None:intergenic
AATACAGACAATACCTTTGC+AGG 0.376354 3_1:+79862013 None:intergenic
CTATCACTCGTCGGAGTAAC+CGG 0.377163 3_1:+79864423 None:intergenic
ATGCTCCATAGTATACTGTT+TGG 0.382079 3_1:-79863032 Msa0378970:CDS
CTATTCTACTTCTAATTCTA+GGG 0.384269 3_1:-79864778 Msa0378970:five_prime_UTR
GTCTATACAGGTTAAAGCTT+TGG 0.386031 3_1:-79859834 Msa0378970:three_prime_UTR
TTTGGTATCGTCTAGGGTTT+CGG 0.386462 3_1:+79864692 None:intergenic
CTCCTGTTAGCTGTCTATAC+AGG 0.397071 3_1:-79859846 Msa0378970:three_prime_UTR
GTGCGGGTTACATCTAAATA+TGG 0.398787 3_1:+79859743 None:intergenic
CCTAGAATTAGAAGTAGAAT+AGG 0.410516 3_1:+79864779 None:intergenic
AACAATCTAAAGAGGAATAT+AGG 0.417865 3_1:-79862902 Msa0378970:CDS
TGCTCCATAGTATACTGTTT+GGG 0.420968 3_1:-79863031 Msa0378970:CDS
CCCACACATAACCAGAAAAC+TGG 0.422298 3_1:+79862879 None:intergenic
ACCTTTGCAGGTGTTTCTCC+AGG 0.429504 3_1:+79862025 None:intergenic
CGGTTACTCCGACGAGTGAT+AGG 0.432059 3_1:-79864422 Msa0378970:CDS
GGTAGCCATGGATGAAGAAA+AGG 0.436423 3_1:+79864713 None:intergenic
AAAGGAAAAGCAAGATACTA+AGG 0.439714 3_1:-79860751 Msa0378970:CDS
TGTGGATTTAGCTTCAGCTT+TGG 0.444959 3_1:+79860917 None:intergenic
AGCATATGCAGGTTGTCATC+AGG 0.452386 3_1:+79863050 None:intergenic
AGTTGTAGTTGAGATTCTTA+AGG 0.454398 3_1:-79860345 Msa0378970:CDS
CAGCTCAAGGATATTCCTAA+TGG 0.456524 3_1:-79864204 Msa0378970:intron
CGACGAGTGATAGGCCAACT+AGG 0.464921 3_1:-79864413 Msa0378970:CDS
TCTAGGGTTTCTCTTCCGCT+AGG 0.467674 3_1:-79864762 Msa0378970:five_prime_UTR
CTGCCTACTCGGCTCTACCT+TGG 0.468843 3_1:+79860379 None:intergenic
AACCTGTATAGACAGCTAAC+AGG 0.473251 3_1:+79859844 None:intergenic
TAAAGGACTGATAATTGAAA+AGG 0.476582 3_1:-79864325 Msa0378970:intron
GGAAGGTCTTCTTCCAGTAA+AGG 0.477738 3_1:-79864342 Msa0378970:CDS
AAACTTCGAAGGTGAAGGTT+CGG 0.483514 3_1:+79864365 None:intergenic
TGCAGAAAATAGAATCTTGT+GGG 0.483707 3_1:-79859898 Msa0378970:three_prime_UTR
TAGAGCATCTATCATAGAAA+AGG 0.483847 3_1:+79859786 None:intergenic
GATGTTGCAGTGGCAAATAA+TGG 0.486223 3_1:-79861035 Msa0378970:CDS
AAAACAGAGAACAAGGGTAA+AGG 0.493647 3_1:-79862680 Msa0378970:CDS
GGTTGCAGGTTGATCTGACT+TGG 0.495113 3_1:+79860791 None:intergenic
GATGTCGATGCGGGTAAAGA+TGG 0.495668 3_1:-79859971 Msa0378970:CDS
TTACTCTTCATCTTCATCAC+TGG 0.499151 3_1:+79859943 None:intergenic
CTTCACCTTCGAAGTTTGGA+AGG 0.500580 3_1:-79864359 Msa0378970:CDS
GCAACCTCTAGCAAATCTCC+TGG 0.500613 3_1:-79862043 Msa0378970:CDS
GAAGATGCTGGTGAGAAGAA+GGG 0.505112 3_1:-79864480 Msa0378970:CDS
CAAGGTAGAGCCGAGTAGGC+AGG 0.505315 3_1:-79860378 Msa0378970:CDS
GGAACTGTCTGCAAAGCTGT+TGG 0.508885 3_1:-79862478 Msa0378970:CDS
CTAGGGTTTCTCTTCCGCTA+GGG 0.510869 3_1:-79864761 Msa0378970:five_prime_UTR
GCGTGCATGTCCTGCCTACT+CGG 0.511396 3_1:+79860368 None:intergenic
GGCGATGGGGATGTCGATGC+GGG 0.518653 3_1:-79859980 Msa0378970:CDS
TGTGATATCCTCCGCCAACT+TGG 0.519770 3_1:-79860205 Msa0378970:intron
GATGAGGAGGAGGAAGATGC+TGG 0.524251 3_1:-79864492 Msa0378970:CDS
TGAAAATAAAATTTAGCTGT+GGG 0.524487 3_1:+79859871 None:intergenic
GTCTAGGGTTTCGGTAGCCA+TGG 0.528885 3_1:+79864701 None:intergenic
AAGCTGATAGTGATGGCGAT+GGG 0.530338 3_1:-79859994 Msa0378970:CDS
AAAGATGATGATGATGAAGA+TGG 0.532403 3_1:-79864540 Msa0378970:CDS
CAATAATAATGTTTACATGC+AGG 0.532869 3_1:+79859666 None:intergenic
CTTCCAAACTTCGAAGGTGA+AGG 0.533904 3_1:+79864360 None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG 0.535530 3_1:-79862593 Msa0378970:intron
AAGGCTGCGGTTAAGGATCA+AGG 0.539742 3_1:-79860705 Msa0378970:intron
GTATACTATGGAGCATATGC+AGG 0.541768 3_1:+79863039 None:intergenic
GGTGGGTAAATCAGAGGGAG+AGG 0.543397 3_1:-79861000 Msa0378970:CDS
TCATCCTCTTCAACATCAGA+AGG 0.546993 3_1:+79861101 None:intergenic
GCATAGAAAAGCAGAGGTGA+AGG 0.548691 3_1:-79860074 Msa0378970:CDS
AAGCAAAACTGCAAAGGCTG+CGG 0.555092 3_1:-79860718 Msa0378970:CDS
GGCTGCAAGCAAAACTGCAA+AGG 0.556180 3_1:-79860724 Msa0378970:CDS
AAATCTGTAATAAAGGGGTG+CGG 0.557661 3_1:+79859726 None:intergenic
ATGAAAATAAAATTTAGCTG+TGG 0.560967 3_1:+79859870 None:intergenic
AGACCAAGGTAGAGCCGAGT+AGG 0.561195 3_1:-79860382 Msa0378970:CDS
GTCAGGTTAACAATCTAAAG+AGG 0.562124 3_1:-79862910 Msa0378970:intron
CTGCAGAAAATAGAATCTTG+TGG 0.567663 3_1:-79859899 Msa0378970:three_prime_UTR
TCCTGGAGAAACACCTGCAA+AGG 0.568341 3_1:-79862026 Msa0378970:intron
ATACAGGTTAAAGCTTTGGT+AGG 0.571121 3_1:-79859830 Msa0378970:three_prime_UTR
AGAGGTCTTCTTAACAGATG+TGG 0.571409 3_1:+79860899 None:intergenic
AGATCGTACCAAGTTGGCGG+AGG 0.575455 3_1:+79860197 None:intergenic
GAAGCTGATAGTGATGGCGA+TGG 0.577833 3_1:-79859995 Msa0378970:CDS
AATGGAAGTGATAACGAGGT+GGG 0.578180 3_1:-79861017 Msa0378970:CDS
GTAGCCATGGATGAAGAAAA+GGG 0.579235 3_1:+79864714 None:intergenic
GTCGTCAGAGAAGAAGAGTC+CGG 0.583062 3_1:-79864442 Msa0378970:CDS
AAAGCCTTCTGATGTTGAAG+AGG 0.584119 3_1:-79861105 Msa0378970:CDS
TTGCATCAGAAAGTTCAGCT+TGG 0.584847 3_1:+79861078 None:intergenic
AATCTGTAATAAAGGGGTGC+GGG 0.591429 3_1:+79859727 None:intergenic
GACGAGTGATAGGCCAACTA+GGG 0.592833 3_1:-79864412 Msa0378970:CDS
AAAGCAAGATACTAAGGGAA+AGG 0.596671 3_1:-79860745 Msa0378970:CDS
TGGCGATGGGGATGTCGATG+CGG 0.597275 3_1:-79859981 Msa0378970:CDS
CTAGTTGGCCTATCACTCGT+CGG 0.600264 3_1:+79864414 None:intergenic
AACGAGGTGGGTAAATCAGA+GGG 0.602782 3_1:-79861005 Msa0378970:CDS
AAAAGATCGTACCAAGTTGG+CGG 0.607538 3_1:+79860194 None:intergenic
GCCAACTAGGGAAAGGAAGA+CGG 0.609544 3_1:-79864400 Msa0378970:CDS
GGGACGTGGTACTCAGCTCA+AGG 0.613257 3_1:-79864217 Msa0378970:CDS
GAGGAAGAAGCTGATAGTGA+TGG 0.613294 3_1:-79860001 Msa0378970:CDS
TGATGAGGAAGATGAAGGTG+AGG 0.613693 3_1:-79860020 Msa0378970:CDS
GTGATAGGCCAACTAGGGAA+AGG 0.614124 3_1:-79864407 Msa0378970:CDS
AAGGAAAAGCAAGATACTAA+GGG 0.616103 3_1:-79860750 Msa0378970:CDS
AATTAATAATATGTCTGATG+AGG 0.618113 3_1:-79860035 Msa0378970:CDS
ATGACAAATCTGTAATAAAG+GGG 0.618647 3_1:+79859721 None:intergenic
TGATGCTGATGATGAGGAGG+AGG 0.619807 3_1:-79864502 Msa0378970:CDS
GAACATCAGTAGTAGCATGT+GGG 0.620057 3_1:+79862442 None:intergenic
TTATGTGTGGGCTGAAAATG+AGG 0.621414 3_1:-79862867 Msa0378970:intron
TTTAATGCATAGAAAAGCAG+AGG 0.621749 3_1:-79860080 Msa0378970:CDS
GAAGACCTTCCAAACTTCGA+AGG 0.621788 3_1:+79864354 None:intergenic
AGAACATCAGTAGTAGCATG+TGG 0.622938 3_1:+79862441 None:intergenic
TTCTCCAGGAGATTTGCTAG+AGG 0.624862 3_1:+79862039 None:intergenic
AGAGAACAAGGGTAAAGGAG+AGG 0.625869 3_1:-79862675 Msa0378970:CDS
TAATGGAAGTGATAACGAGG+TGG 0.625907 3_1:-79861018 Msa0378970:CDS
TAACGAGGTGGGTAAATCAG+AGG 0.626281 3_1:-79861006 Msa0378970:CDS
AACATCAGTAGTAGCATGTG+GGG 0.636718 3_1:+79862443 None:intergenic
TAAAAGTAGTAAGAAGACCA+AGG 0.637365 3_1:-79860396 Msa0378970:CDS
CCAAGATGAAGATGTTGCAG+TGG 0.642055 3_1:-79861045 Msa0378970:CDS
TGCTGATGCTGATGATGAGG+AGG 0.650159 3_1:-79864505 Msa0378970:CDS
CGATGCTGATGCTGATGATG+AGG 0.652325 3_1:-79864508 Msa0378970:CDS
AAGAGAAGCAGAATCCTGCT+CGG 0.653130 3_1:+79860815 None:intergenic
ATGTCTGATGAGGAAGATGA+AGG 0.653342 3_1:-79860025 Msa0378970:CDS
AACTAGGGAAAGGAAGACGG+TGG 0.691004 3_1:-79864397 Msa0378970:CDS
ACTGTTTGGGAAGAAAACAA+AGG 0.691158 3_1:-79863018 Msa0378970:intron
AGCTGATAGTGATGGCGATG+GGG 0.696008 3_1:-79859993 Msa0378970:CDS
TGAAGTAACTGAACAAGACG+CGG 0.710408 3_1:-79864616 Msa0378970:CDS
GAAAAGATTGAAAACCCTAG+CGG 0.718687 3_1:+79864747 None:intergenic
AAATAATGGAAGTGATAACG+AGG 0.765529 3_1:-79861021 Msa0378970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTCAATTTTTTAT+CGG - chr3_1:79860748-79860767 Msa0378970:CDS 10.0%
!! GATTTATTTCATTTATTTAA+AGG - chr3_1:79861691-79861710 Msa0378970:intron 10.0%
!!! GTTTGTTATTTAATATAAAT+GGG - chr3_1:79862263-79862282 Msa0378970:intron 10.0%
!!! GTTTTTGATTAATTTGATTT+TGG - chr3_1:79860411-79860430 Msa0378970:intron 15.0%
!! AAATTAAAATAACTGAATTG+TGG + chr3_1:79860952-79860971 None:intergenic 15.0%
!!! GGTTTGTTATTTAATATAAA+TGG - chr3_1:79862262-79862281 Msa0378970:intron 15.0%
!!! AATATCAATTTTAGAATACT+TGG + chr3_1:79862457-79862476 None:intergenic 15.0%
!!! TTTTTTGGTATTGATTTTTT+TGG + chr3_1:79863819-79863838 None:intergenic 15.0%
!! TTCAGAATAACAAAAAATTA+GGG + chr3_1:79864125-79864144 None:intergenic 15.0%
!! GCAATGTTAAATTTATTTAT+TGG - chr3_1:79865033-79865052 Msa0378970:five_prime_UTR 15.0%
!! ATAGAGAGAGAAATAAAAAA+GGG + chr3_1:79859839-79859858 None:intergenic 20.0%
!! TATAGAGAGAGAAATAAAAA+AGG + chr3_1:79859840-79859859 None:intergenic 20.0%
!!! ATTTTTTTCTCTCTCAATTT+TGG - chr3_1:79860369-79860388 Msa0378970:CDS 20.0%
!!! TTGATTTTGGTTATTTTTTC+AGG - chr3_1:79860424-79860443 Msa0378970:intron 20.0%
!!! TGATTTTGGTTATTTTTTCA+GGG - chr3_1:79860425-79860444 Msa0378970:intron 20.0%
!! GAAATGCAAAAAAAAGAAAA+AGG + chr3_1:79860609-79860628 None:intergenic 20.0%
!! AATGAAATAAATCTTTGCAA+AGG + chr3_1:79861684-79861703 None:intergenic 20.0%
!!! TATATCATTTTTGAATCCAA+AGG - chr3_1:79862102-79862121 Msa0378970:intron 20.0%
!!! TTTATTTTCCATTTTAGAAG+TGG + chr3_1:79862138-79862157 None:intergenic 20.0%
!!! ATAAATGGGTTAATATCATT+TGG - chr3_1:79862277-79862296 Msa0378970:intron 20.0%
!!! AATAAAAAAGATGATTTGTC+TGG + chr3_1:79862409-79862428 None:intergenic 20.0%
!!! AGACAAATCATCTTTTTTAT+TGG - chr3_1:79862408-79862427 Msa0378970:intron 20.0%
!!! TGTCTGTATTTTATTCATTT+TGG - chr3_1:79862662-79862681 Msa0378970:CDS 20.0%
!! GAGAAAACTTAATTAATGTT+TGG - chr3_1:79863105-79863124 Msa0378970:intron 20.0%
!! TTTATTCGCTAAAATTAACA+GGG + chr3_1:79863324-79863343 None:intergenic 20.0%
!! ATTTATTCGCTAAAATTAAC+AGG + chr3_1:79863325-79863344 None:intergenic 20.0%
!! TCAGAATAACAAAAAATTAG+GGG + chr3_1:79864124-79864143 None:intergenic 20.0%
!! GTTCAGAATAACAAAAAATT+AGG + chr3_1:79864126-79864145 None:intergenic 20.0%
!! AATTAATAATATGTCTGATG+AGG - chr3_1:79864627-79864646 Msa0378970:CDS 20.0%
!! TGAAAATAAAATTTAGCTGT+GGG + chr3_1:79864794-79864813 None:intergenic 20.0%
!! ATGAAAATAAAATTTAGCTG+TGG + chr3_1:79864795-79864814 None:intergenic 20.0%
!! AATGACAAATCTGTAATAAA+GGG + chr3_1:79864945-79864964 None:intergenic 20.0%
!! AAATGACAAATCTGTAATAA+AGG + chr3_1:79864946-79864965 None:intergenic 20.0%
!!! TTTTTGGTTTTTAGTTTTGC+CGG - chr3_1:79859715-79859734 Msa0378970:three_prime_UTR 25.0%
! TAGAGAGAGAAATAAAAAAG+GGG + chr3_1:79859838-79859857 None:intergenic 25.0%
! CTATTCTACTTCTAATTCTA+GGG - chr3_1:79859884-79859903 Msa0378970:three_prime_UTR 25.0%
! TAAAGGACTGATAATTGAAA+AGG - chr3_1:79860337-79860356 Msa0378970:CDS 25.0%
!!! TTTTTTTTGCATTTCCTGTA+TGG - chr3_1:79860614-79860633 Msa0378970:intron 25.0%
! ACAATTAAAATCATCCATAC+AGG + chr3_1:79860631-79860650 None:intergenic 25.0%
! TTGAACATAATCACATATGT+TGG + chr3_1:79860720-79860739 None:intergenic 25.0%
!! TATAGTTGATTGAAGTATCA+TGG - chr3_1:79861124-79861143 Msa0378970:CDS 25.0%
! AATTATAAGTCACGCTTATT+GGG + chr3_1:79861219-79861238 None:intergenic 25.0%
!! AAGTAATTGGTTTCAACAAA+AGG + chr3_1:79861353-79861372 None:intergenic 25.0%
! GCAAACAAAAATAAACATGT+GGG + chr3_1:79861380-79861399 None:intergenic 25.0%
! TTTCAATAACCAAAATGGTA+TGG + chr3_1:79861454-79861473 None:intergenic 25.0%
!!! ACTGACTTTCATTAATCTTT+TGG - chr3_1:79861475-79861494 Msa0378970:intron 25.0%
! TTTATTGCAAACTATTTCAG+TGG - chr3_1:79861566-79861585 Msa0378970:intron 25.0%
! AACAATCTAAAGAGGAATAT+AGG - chr3_1:79861760-79861779 Msa0378970:intron 25.0%
! AATAGATATGAATCTTTGTG+AGG - chr3_1:79861857-79861876 Msa0378970:intron 25.0%
! ATAGATATGAATCTTTGTGA+GGG - chr3_1:79861858-79861877 Msa0378970:intron 25.0%
! ATCTACATCTTCACAATTAT+TGG - chr3_1:79861954-79861973 Msa0378970:intron 25.0%
!! TTCTAACAAAACATGTTTTC+AGG - chr3_1:79862160-79862179 Msa0378970:intron 25.0%
!!! TTGCTTTTATGTTAACAGAA+AGG - chr3_1:79862577-79862596 Msa0378970:intron 25.0%
!!! TTCTAGAGTTTGACTTTTTT+TGG - chr3_1:79862815-79862834 Msa0378970:intron 25.0%
!!! TCTAGAGTTTGACTTTTTTT+GGG - chr3_1:79862816-79862835 Msa0378970:intron 25.0%
! GAATATATGTGATGTATTTG+AGG + chr3_1:79863005-79863024 None:intergenic 25.0%
!! TTTTATGGAACTATCTTGAA+TGG + chr3_1:79863075-79863094 None:intergenic 25.0%
! TTCAAGATAGTTCCATAAAA+AGG - chr3_1:79863075-79863094 Msa0378970:CDS 25.0%
!! TTCTCATTGTTTCCTTTTTA+TGG + chr3_1:79863090-79863109 None:intergenic 25.0%
! GAAGATATCTTCATACAAAT+TGG + chr3_1:79863232-79863251 None:intergenic 25.0%
!!! TATCATCCTTTTATTTCCTT+TGG - chr3_1:79863398-79863417 Msa0378970:intron 25.0%
! AAGATCATCAAACATAAAGA+GGG + chr3_1:79864000-79864019 None:intergenic 25.0%
! AGAATAACAAAAAATTAGGG+GGG + chr3_1:79864122-79864141 None:intergenic 25.0%
! CAGAATAACAAAAAATTAGG+GGG + chr3_1:79864123-79864142 None:intergenic 25.0%
! TAAGGAAGTAGATTTCAATA+AGG - chr3_1:79864335-79864354 Msa0378970:CDS 25.0%
!! AAAATTTTTAACCTGCAAAC+TGG + chr3_1:79864388-79864407 None:intergenic 25.0%
! TGATAAAATTTCTTCCTTCA+GGG - chr3_1:79864494-79864513 Msa0378970:CDS 25.0%
!! TTTTGCAATTAAATGTTGAC+AGG - chr3_1:79864541-79864560 Msa0378970:CDS 25.0%
!! CTTTTCTATGCATTAAATCA+AGG + chr3_1:79864579-79864598 None:intergenic 25.0%
!! TATGATAGATGCTCTAAATT+AGG - chr3_1:79864883-79864902 Msa0378970:five_prime_UTR 25.0%
! ATGACAAATCTGTAATAAAG+GGG + chr3_1:79864944-79864963 None:intergenic 25.0%
! CAATAATAATGTTTACATGC+AGG + chr3_1:79864999-79865018 None:intergenic 25.0%
!! TAACATTGCTCTAAATTAGA+AGG + chr3_1:79865022-79865041 None:intergenic 25.0%
AAAAATACTTGAGACGAGAA+CGG + chr3_1:79859681-79859700 None:intergenic 30.0%
!!! TTTTGGTTTTTAGTTTTGCC+GGG - chr3_1:79859716-79859735 Msa0378970:three_prime_UTR 30.0%
!!! CTTCTTTTTTTTCTTTCTCC+CGG + chr3_1:79859737-79859756 None:intergenic 30.0%
AGAGAGAGAAATAAAAAAGG+GGG + chr3_1:79859837-79859856 None:intergenic 30.0%
! GAAAGATGAGATTTGGAATT+GGG + chr3_1:79859864-79859883 None:intergenic 30.0%
AGAATAGGAAAGATGAGATT+TGG + chr3_1:79859871-79859890 None:intergenic 30.0%
CCTAGAATTAGAAGTAGAAT+AGG + chr3_1:79859886-79859905 None:intergenic 30.0%
CCTATTCTACTTCTAATTCT+AGG - chr3_1:79859883-79859902 Msa0378970:three_prime_UTR 30.0%
TTCATCATCATCATCTTTCT+CGG + chr3_1:79860120-79860139 None:intergenic 30.0%
! AAAGATGATGATGATGAAGA+TGG - chr3_1:79860122-79860141 Msa0378970:intron 30.0%
TTCAATTATCAGTCCTTTAC+TGG + chr3_1:79860336-79860355 None:intergenic 30.0%
!!! TCTCTCAATTTTGGTTTTTG+AGG - chr3_1:79860378-79860397 Msa0378970:CDS 30.0%
TGCTCAAAAGTAACTATGTA+AGG + chr3_1:79860496-79860515 None:intergenic 30.0%
TGAAGATATCGTGTGAATTT+AGG - chr3_1:79860524-79860543 Msa0378970:intron 30.0%
GAAGATATCGTGTGAATTTA+GGG - chr3_1:79860525-79860544 Msa0378970:intron 30.0%
!! GACATCTGTCTTTTTCATTA+TGG - chr3_1:79860999-79861018 Msa0378970:CDS 30.0%
TAAACAAGACTTCCAAATAC+TGG + chr3_1:79861063-79861082 None:intergenic 30.0%
GAATTATAAGTCACGCTTAT+TGG + chr3_1:79861220-79861239 None:intergenic 30.0%
TAAGCGTGACTTATAATTCT+AGG - chr3_1:79861221-79861240 Msa0378970:intron 30.0%
AAGCGTGACTTATAATTCTA+GGG - chr3_1:79861222-79861241 Msa0378970:intron 30.0%
ACAAAAGGTTGCTTATATGT+TGG + chr3_1:79861338-79861357 None:intergenic 30.0%
GGCAAACAAAAATAAACATG+TGG + chr3_1:79861381-79861400 None:intergenic 30.0%
CAGTGTTTCAATAACCAAAA+TGG + chr3_1:79861459-79861478 None:intergenic 30.0%
TGTTATGTGTATGGTATTAG+TGG - chr3_1:79861500-79861519 Msa0378970:intron 30.0%
TAGATATGAATCTTTGTGAG+GGG - chr3_1:79861859-79861878 Msa0378970:intron 30.0%
GAAGATGTAGATTTAATTGC+AGG + chr3_1:79861946-79861965 None:intergenic 30.0%
! TTCACACTACTCTTGTTTAT+TGG + chr3_1:79862067-79862086 None:intergenic 30.0%
! TTCAAGTACCACTTCTAAAA+TGG - chr3_1:79862127-79862146 Msa0378970:intron 30.0%
!! TAACAAAACATGTTTTCAGG+AGG - chr3_1:79862163-79862182 Msa0378970:intron 30.0%
TCATCAATCAGTTAAGACAA+AGG + chr3_1:79862378-79862397 None:intergenic 30.0%
CTAGAACGAATATTCAGAAT+TGG + chr3_1:79862801-79862820 None:intergenic 30.0%
! TGATTTGGATAGTTGTATTG+TGG - chr3_1:79862901-79862920 Msa0378970:CDS 30.0%
GTTACTTGTAATATGCTGTT+TGG - chr3_1:79863149-79863168 Msa0378970:intron 30.0%
! GGTTCTAATTAAAGTCAATC+AGG + chr3_1:79863303-79863322 None:intergenic 30.0%
AATCCTCCAAAGGAAATAAA+AGG + chr3_1:79863407-79863426 None:intergenic 30.0%
AAAAAGCAAACTTCAGAATC+TGG - chr3_1:79863525-79863544 Msa0378970:intron 30.0%
! AAATAATGGAAGTGATAACG+AGG - chr3_1:79863641-79863660 Msa0378970:intron 30.0%
TACTTCCAAAAAATCTGTGA+AGG - chr3_1:79863710-79863729 Msa0378970:intron 30.0%
!!! CTTTCCAGTTTTTTGTATCT+TGG + chr3_1:79863895-79863914 None:intergenic 30.0%
CAAGATACAAAAAACTGGAA+AGG - chr3_1:79863893-79863912 Msa0378970:intron 30.0%
AAAGGAAAAGCAAGATACTA+AGG - chr3_1:79863911-79863930 Msa0378970:intron 30.0%
AAGGAAAAGCAAGATACTAA+GGG - chr3_1:79863912-79863931 Msa0378970:intron 30.0%
CAAGATCATCAAACATAAAG+AGG + chr3_1:79864001-79864020 None:intergenic 30.0%
!! TTAAGCATTGAAGTCTATAG+AGG + chr3_1:79864025-79864044 None:intergenic 30.0%
TAGACTTCAATGCTTAATCT+AGG - chr3_1:79864028-79864047 Msa0378970:intron 30.0%
AGACTTCAATGCTTAATCTA+GGG - chr3_1:79864029-79864048 Msa0378970:intron 30.0%
GAATAACAAAAAATTAGGGG+GGG + chr3_1:79864121-79864140 None:intergenic 30.0%
! CTTTTACCTTTACCTACAAT+TGG + chr3_1:79864252-79864271 None:intergenic 30.0%
TAAAAGTAGTAAGAAGACCA+AGG - chr3_1:79864266-79864285 Msa0378970:intron 30.0%
AGTTGTAGTTGAGATTCTTA+AGG - chr3_1:79864317-79864336 Msa0378970:intron 30.0%
! TTTTGAATATGTCTTGATGC+AGG - chr3_1:79864426-79864445 Msa0378970:CDS 30.0%
! CTGAAGGAAGAAATTTTATC+AGG + chr3_1:79864495-79864514 None:intergenic 30.0%
CTGATAAAATTTCTTCCTTC+AGG - chr3_1:79864493-79864512 Msa0378970:CDS 30.0%
GATAAAATTTCTTCCTTCAG+GGG - chr3_1:79864495-79864514 Msa0378970:CDS 30.0%
ATAAAATTTCTTCCTTCAGG+GGG - chr3_1:79864496-79864515 Msa0378970:CDS 30.0%
! ATGTTGACAGGTAAACATTT+TGG - chr3_1:79864553-79864572 Msa0378970:CDS 30.0%
TTTAATGCATAGAAAAGCAG+AGG - chr3_1:79864582-79864601 Msa0378970:CDS 30.0%
TGCAGAAAATAGAATCTTGT+GGG - chr3_1:79864764-79864783 Msa0378970:five_prime_UTR 30.0%
! AAAGCTTTGGTAGGTATATT+TGG - chr3_1:79864841-79864860 Msa0378970:five_prime_UTR 30.0%
! TAGAGCATCTATCATAGAAA+AGG + chr3_1:79864879-79864898 None:intergenic 30.0%
GAGAGAGAAATAAAAAAGGG+GGG + chr3_1:79859836-79859855 None:intergenic 35.0%
! GGAAAGATGAGATTTGGAAT+TGG + chr3_1:79859865-79859884 None:intergenic 35.0%
GAAAAGATTGAAAACCCTAG+CGG + chr3_1:79859918-79859937 None:intergenic 35.0%
! TTTTCCCTTTTCTTCATCCA+TGG - chr3_1:79859944-79859963 Msa0378970:CDS 35.0%
!!! TTTTGGTTTGGTATCGTCTA+GGG + chr3_1:79859979-79859998 None:intergenic 35.0%
!!! GTTTTCGACTTGTTTTGGTT+TGG + chr3_1:79859991-79860010 None:intergenic 35.0%
!! TCAACTTCTTCTTCTGGTTT+GGG + chr3_1:79860029-79860048 None:intergenic 35.0%
! TTCAACTTCTTCTTCTGGTT+TGG + chr3_1:79860030-79860049 None:intergenic 35.0%
GTTACTTCAACTTCTTCTTC+TGG + chr3_1:79860035-79860054 None:intergenic 35.0%
AGGCAATTAGACATACCATT+AGG + chr3_1:79860476-79860495 None:intergenic 35.0%
ACAAATATGTGTCACCAGTA+TGG + chr3_1:79860683-79860702 None:intergenic 35.0%
CTGAATTGTGGTCAAATCTA+GGG + chr3_1:79860940-79860959 None:intergenic 35.0%
ACTGAATTGTGGTCAAATCT+AGG + chr3_1:79860941-79860960 None:intergenic 35.0%
TTTCACATGCATACATCTGT+AGG - chr3_1:79860969-79860988 Msa0378970:CDS 35.0%
TTCACATGCATACATCTGTA+GGG - chr3_1:79860970-79860989 Msa0378970:CDS 35.0%
ATACTCACATGACCAGTATT+TGG - chr3_1:79861048-79861067 Msa0378970:CDS 35.0%
!! TTGGAAGTCTTGTTTACATC+TGG - chr3_1:79861067-79861086 Msa0378970:CDS 35.0%
! TTTTCCTATGTTATGAGCAC+AGG - chr3_1:79861092-79861111 Msa0378970:CDS 35.0%
ATTGCAGCTGTTAAGAACAA+TGG - chr3_1:79861147-79861166 Msa0378970:intron 35.0%
AGCGTGACTTATAATTCTAG+GGG - chr3_1:79861223-79861242 Msa0378970:intron 35.0%
! TATCTAATTGACTCTACCTG+TGG - chr3_1:79861253-79861272 Msa0378970:intron 35.0%
! ACATGTGGGCTATAAGTAAT+TGG + chr3_1:79861366-79861385 None:intergenic 35.0%
TGACAAGCATTATGCATGTA+CGG + chr3_1:79861402-79861421 None:intergenic 35.0%
CAATAACCAAAATGGTATGG+CGG + chr3_1:79861451-79861470 None:intergenic 35.0%
ATGCTCCATAGTATACTGTT+TGG - chr3_1:79861630-79861649 Msa0378970:intron 35.0%
TGCTCCATAGTATACTGTTT+GGG - chr3_1:79861631-79861650 Msa0378970:intron 35.0%
TCTTCCCAAACAGTATACTA+TGG + chr3_1:79861638-79861657 None:intergenic 35.0%
ACTGTTTGGGAAGAAAACAA+AGG - chr3_1:79861644-79861663 Msa0378970:intron 35.0%
GTCAGGTTAACAATCTAAAG+AGG - chr3_1:79861752-79861771 Msa0378970:intron 35.0%
ACATGATGATCTGATCCTTA+TGG - chr3_1:79861910-79861929 Msa0378970:intron 35.0%
ACATCTTCACAATTATTGGC+AGG - chr3_1:79861958-79861977 Msa0378970:intron 35.0%
AAAACAGAGAACAAGGGTAA+AGG - chr3_1:79861982-79862001 Msa0378970:intron 35.0%
AAACAAGAGTAGTGTGAAGA+AGG - chr3_1:79862069-79862088 Msa0378970:CDS 35.0%
AAGTGGTACTTGAATTCCTT+TGG + chr3_1:79862121-79862140 None:intergenic 35.0%
TCTTCTTGCTGAAAAAGAAC+AGG - chr3_1:79862241-79862260 Msa0378970:intron 35.0%
AATACAGACAATACCTTTGC+AGG + chr3_1:79862652-79862671 None:intergenic 35.0%
TACATAACAATAGTGCACTG+CGG + chr3_1:79862700-79862719 None:intergenic 35.0%
AATGTCAGAACCTGATTGAA+AGG - chr3_1:79862726-79862745 Msa0378970:intron 35.0%
ATCACCATCACAACATTGAA+AGG + chr3_1:79862885-79862904 None:intergenic 35.0%
! TCAATGTTGTGATGGTGATT+TGG - chr3_1:79862886-79862905 Msa0378970:CDS 35.0%
TGTATTGTGGATTTCTTACC+TGG - chr3_1:79862914-79862933 Msa0378970:intron 35.0%
! GATTTCTTACCTGGTTTGTA+AGG - chr3_1:79862923-79862942 Msa0378970:intron 35.0%
!! TTTACAGAAAGTGTCATCCA+AGG + chr3_1:79863051-79863070 None:intergenic 35.0%
!! CATCCTTTTATTTCCTTTGG+AGG - chr3_1:79863401-79863420 Msa0378970:intron 35.0%
TCATAACAGAAATCCTCCAA+AGG + chr3_1:79863417-79863436 None:intergenic 35.0%
TCACTTATTTCACACACACT+AGG + chr3_1:79863453-79863472 None:intergenic 35.0%
!!! CTGAAGTTTGCTTTTTCTTC+TGG + chr3_1:79863521-79863540 None:intergenic 35.0%
TTCCAAAAAATCTGTGAAGG+AGG - chr3_1:79863713-79863732 Msa0378970:intron 35.0%
TCCAAAAAATCTGTGAAGGA+GGG - chr3_1:79863714-79863733 Msa0378970:intron 35.0%
!!! TGGAGTTTTTTCACTGCTTT+TGG + chr3_1:79863799-79863818 None:intergenic 35.0%
!!! TGCTCGGTAATTGACTTTTT+TGG + chr3_1:79863834-79863853 None:intergenic 35.0%
AAAAAAGTCAATTACCGAGC+AGG - chr3_1:79863833-79863852 Msa0378970:intron 35.0%
!!! GTTTTTTGTATCTTGGTTGC+AGG + chr3_1:79863888-79863907 None:intergenic 35.0%
GCAACCAAGATACAAAAAAC+TGG - chr3_1:79863888-79863907 Msa0378970:intron 35.0%
AAAGCAAGATACTAAGGGAA+AGG - chr3_1:79863917-79863936 Msa0378970:intron 35.0%
GACTTCAATGCTTAATCTAG+GGG - chr3_1:79864030-79864049 Msa0378970:intron 35.0%
TCAGAAAGAACTAAGTAAGC+AGG + chr3_1:79864227-79864246 None:intergenic 35.0%
TTCTTTCTGATGCCAATTGT+AGG - chr3_1:79864237-79864256 Msa0378970:intron 35.0%
TTACTCTTCATCTTCATCAC+TGG + chr3_1:79864722-79864741 None:intergenic 35.0%
CTGCAGAAAATAGAATCTTG+TGG - chr3_1:79864763-79864782 Msa0378970:five_prime_UTR 35.0%
GTCTATACAGGTTAAAGCTT+TGG - chr3_1:79864828-79864847 Msa0378970:five_prime_UTR 35.0%
! ATACAGGTTAAAGCTTTGGT+AGG - chr3_1:79864832-79864851 Msa0378970:five_prime_UTR 35.0%
AAATCTGTAATAAAGGGGTG+CGG + chr3_1:79864939-79864958 None:intergenic 35.0%
GTAGCCATGGATGAAGAAAA+GGG + chr3_1:79859951-79859970 None:intergenic 40.0%
! TTTGGTATCGTCTAGGGTTT+CGG + chr3_1:79859973-79859992 None:intergenic 40.0%
!!! GTTTTGGTTTGGTATCGTCT+AGG + chr3_1:79859980-79859999 None:intergenic 40.0%
!! GCTTCGTTTTCGACTTGTTT+TGG + chr3_1:79859996-79860015 None:intergenic 40.0%
!! TTCTGGTTTGGGTTCATCTT+TGG + chr3_1:79860018-79860037 None:intergenic 40.0%
TGAAGTAACTGAACAAGACG+CGG - chr3_1:79860046-79860065 Msa0378970:CDS 40.0%
AAACTTCGAAGGTGAAGGTT+CGG + chr3_1:79860300-79860319 None:intergenic 40.0%
!!! TGGTTATTTTTTCAGGGACG+TGG - chr3_1:79860431-79860450 Msa0378970:intron 40.0%
CAGCTCAAGGATATTCCTAA+TGG - chr3_1:79860458-79860477 Msa0378970:intron 40.0%
GTCTGTTTGTGTCTGTTCAT+TGG - chr3_1:79860557-79860576 Msa0378970:intron 40.0%
TTGACGTGTTTGTGTTGTGT+CGG - chr3_1:79860773-79860792 Msa0378970:CDS 40.0%
! TGTTGTGTCGGTGCTTTAAA+GGG - chr3_1:79860785-79860804 Msa0378970:CDS 40.0%
GCGTGACTTATAATTCTAGG+GGG - chr3_1:79861224-79861243 Msa0378970:intron 40.0%
TTTCATGACCATATGTCCAC+AGG + chr3_1:79861272-79861291 None:intergenic 40.0%
! TTTTGTCCGCCATACCATTT+TGG - chr3_1:79861442-79861461 Msa0378970:intron 40.0%
! CTTTTGGCGTGTTATGTGTA+TGG - chr3_1:79861491-79861510 Msa0378970:intron 40.0%
GTATACTATGGAGCATATGC+AGG + chr3_1:79861626-79861645 None:intergenic 40.0%
!! TCAGGAATAGCAAAGGTGTT+AGG + chr3_1:79861726-79861745 None:intergenic 40.0%
!! ACACCTTTGCTATTCCTGAA+TGG - chr3_1:79861727-79861746 Msa0378970:intron 40.0%
! AGGAATATAGGCCAGTTTTC+TGG - chr3_1:79861772-79861791 Msa0378970:intron 40.0%
!!! CCAGTTTTCTGGTTATGTGT+GGG - chr3_1:79861783-79861802 Msa0378970:intron 40.0%
! TTATGTGTGGGCTGAAAATG+AGG - chr3_1:79861795-79861814 Msa0378970:intron 40.0%
GCAGGTTAATATCAGCCATA+AGG + chr3_1:79861928-79861947 None:intergenic 40.0%
GCAGGAAAAACAGAGAACAA+GGG - chr3_1:79861976-79861995 Msa0378970:intron 40.0%
TGCAAAGCTGTTGGAATTTC+TGG - chr3_1:79862193-79862212 Msa0378970:intron 40.0%
AACATCAGTAGTAGCATGTG+GGG + chr3_1:79862222-79862241 None:intergenic 40.0%
GAACATCAGTAGTAGCATGT+GGG + chr3_1:79862223-79862242 None:intergenic 40.0%
AGAACATCAGTAGTAGCATG+TGG + chr3_1:79862224-79862243 None:intergenic 40.0%
ATTGTGCTTGATCACGACTT+TGG - chr3_1:79862841-79862860 Msa0378970:intron 40.0%
GACACCTTTCAATGTTGTGA+TGG - chr3_1:79862878-79862897 Msa0378970:CDS 40.0%
TGAACTTGACCTTACAAACC+AGG + chr3_1:79862935-79862954 None:intergenic 40.0%
! GTGATGTATTTGAGGCTGAA+TGG + chr3_1:79862997-79863016 None:intergenic 40.0%
TAAGAAGCTGCAGAAAGAAC+TGG + chr3_1:79863360-79863379 None:intergenic 40.0%
AAAGCCTTCTGATGTTGAAG+AGG - chr3_1:79863557-79863576 Msa0378970:intron 40.0%
TCATCCTCTTCAACATCAGA+AGG + chr3_1:79863564-79863583 None:intergenic 40.0%
TTGCATCAGAAAGTTCAGCT+TGG + chr3_1:79863587-79863606 None:intergenic 40.0%
CACTGCAACATCTTCATCTT+GGG + chr3_1:79863619-79863638 None:intergenic 40.0%
GATGTTGCAGTGGCAAATAA+TGG - chr3_1:79863627-79863646 Msa0378970:intron 40.0%
! TAATGGAAGTGATAACGAGG+TGG - chr3_1:79863644-79863663 Msa0378970:intron 40.0%
! AATGGAAGTGATAACGAGGT+GGG - chr3_1:79863645-79863664 Msa0378970:intron 40.0%
!! GAAGTACTCTTGTGAGCTTT+TGG + chr3_1:79863696-79863715 None:intergenic 40.0%
!!! ACCCTCCTTCACAGATTTTT+TGG + chr3_1:79863718-79863737 None:intergenic 40.0%
! TGTGGATTTAGCTTCAGCTT+TGG + chr3_1:79863748-79863767 None:intergenic 40.0%
AGAGGTCTTCTTAACAGATG+TGG + chr3_1:79863766-79863785 None:intergenic 40.0%
! GTACTTGTTACTCTACTGGT+TGG - chr3_1:79864052-79864071 Msa0378970:intron 40.0%
CAGTTCAGCATGACAACTAA+AGG + chr3_1:79864086-79864105 None:intergenic 40.0%
CTGATGCCAATTGTAGGTAA+AGG - chr3_1:79864243-79864262 Msa0378970:intron 40.0%
GCAATTCTTTACCAGTTTGC+AGG - chr3_1:79864374-79864393 Msa0378970:CDS 40.0%
! AAAAGATCGTACCAAGTTGG+CGG + chr3_1:79864471-79864490 None:intergenic 40.0%
GGAAAAAGATCGTACCAAGT+TGG + chr3_1:79864474-79864493 None:intergenic 40.0%
CAAGAAATTATTCCCCCTGA+AGG + chr3_1:79864511-79864530 None:intergenic 40.0%
ATGTCTGATGAGGAAGATGA+AGG - chr3_1:79864637-79864656 Msa0378970:CDS 40.0%
AACCTGTATAGACAGCTAAC+AGG + chr3_1:79864821-79864840 None:intergenic 40.0%
! GTGCGGGTTACATCTAAATA+TGG + chr3_1:79864922-79864941 None:intergenic 40.0%
! AATCTGTAATAAAGGGGTGC+GGG + chr3_1:79864938-79864957 None:intergenic 40.0%
GGTAGCCATGGATGAAGAAA+AGG + chr3_1:79859952-79859971 None:intergenic 45.0%
GAAGATGCTGGTGAGAAGAA+GGG - chr3_1:79860182-79860201 Msa0378970:intron 45.0%
GAACCTTCACCTTCGAAGTT+TGG - chr3_1:79860299-79860318 Msa0378970:intron 45.0%
CTTCCAAACTTCGAAGGTGA+AGG + chr3_1:79860305-79860324 None:intergenic 45.0%
CTTCACCTTCGAAGTTTGGA+AGG - chr3_1:79860303-79860322 Msa0378970:intron 45.0%
GAAGACCTTCCAAACTTCGA+AGG + chr3_1:79860311-79860330 None:intergenic 45.0%
GGAAGGTCTTCTTCCAGTAA+AGG - chr3_1:79860320-79860339 Msa0378970:intron 45.0%
!! AGTTTGGTGTGTGACACGTT+GGG + chr3_1:79860658-79860677 None:intergenic 45.0%
! GTGTTGTGTCGGTGCTTTAA+AGG - chr3_1:79860784-79860803 Msa0378970:CDS 45.0%
TGTGCCTGTGCTCATAACAT+AGG + chr3_1:79861099-79861118 None:intergenic 45.0%
TGACTCTACCTGTGGACATA+TGG - chr3_1:79861261-79861280 Msa0378970:intron 45.0%
AGCATATGCAGGTTGTCATC+AGG + chr3_1:79861615-79861634 None:intergenic 45.0%
CCACCATTCAGGAATAGCAA+AGG + chr3_1:79861733-79861752 None:intergenic 45.0%
!! CCTTTGCTATTCCTGAATGG+TGG - chr3_1:79861730-79861749 Msa0378970:intron 45.0%
TGTTAACCTGACCACCATTC+AGG + chr3_1:79861744-79861763 None:intergenic 45.0%
!!! GCCAGTTTTCTGGTTATGTG+TGG - chr3_1:79861782-79861801 Msa0378970:intron 45.0%
CCCACACATAACCAGAAAAC+TGG + chr3_1:79861786-79861805 None:intergenic 45.0%
GGCAGGAAAAACAGAGAACA+AGG - chr3_1:79861975-79861994 Msa0378970:intron 45.0%
AGAGAACAAGGGTAAAGGAG+AGG - chr3_1:79861987-79862006 Msa0378970:intron 45.0%
!! TTCTCCAGGAGATTTGCTAG+AGG + chr3_1:79862626-79862645 None:intergenic 45.0%
TCATCCAAGGCAGAATGGTT+GGG + chr3_1:79863038-79863057 None:intergenic 45.0%
AAGTGTCATCCAAGGCAGAA+TGG + chr3_1:79863043-79863062 None:intergenic 45.0%
CCACTGCAACATCTTCATCT+TGG + chr3_1:79863620-79863639 None:intergenic 45.0%
CCAAGATGAAGATGTTGCAG+TGG - chr3_1:79863617-79863636 Msa0378970:intron 45.0%
TAACGAGGTGGGTAAATCAG+AGG - chr3_1:79863656-79863675 Msa0378970:intron 45.0%
AACGAGGTGGGTAAATCAGA+GGG - chr3_1:79863657-79863676 Msa0378970:intron 45.0%
AAGAGAAGCAGAATCCTGCT+CGG + chr3_1:79863850-79863869 None:intergenic 45.0%
AAGCAAAACTGCAAAGGCTG+CGG - chr3_1:79863944-79863963 Msa0378970:intron 45.0%
!! AGGGGTACTTGTTACTCTAC+TGG - chr3_1:79864048-79864067 Msa0378970:intron 45.0%
AAATTAGGGGGGGAACAAAC+AGG + chr3_1:79864111-79864130 None:intergenic 45.0%
GCATAGAAAAGCAGAGGTGA+AGG - chr3_1:79864588-79864607 Msa0378970:CDS 45.0%
TGATGAGGAAGATGAAGGTG+AGG - chr3_1:79864642-79864661 Msa0378970:CDS 45.0%
! GAGGAAGAAGCTGATAGTGA+TGG - chr3_1:79864661-79864680 Msa0378970:CDS 45.0%
! AAGCTGATAGTGATGGCGAT+GGG - chr3_1:79864668-79864687 Msa0378970:CDS 45.0%
CTCCTGTTAGCTGTCTATAC+AGG - chr3_1:79864816-79864835 Msa0378970:five_prime_UTR 45.0%
!!! TTGATTTTATTTTTTATTTT+TGG - chr3_1:79859699-79859718 Msa0378970:three_prime_UTR 5.0%
!!! ATATTTTTCTTTTTTATATA+TGG - chr3_1:79864179-79864198 Msa0378970:intron 5.0%
! TCTAGGGTTTCTCTTCCGCT+AGG - chr3_1:79859900-79859919 Msa0378970:three_prime_UTR 50.0%
CTAGGGTTTCTCTTCCGCTA+GGG - chr3_1:79859901-79859920 Msa0378970:three_prime_UTR 50.0%
! CGATGCTGATGCTGATGATG+AGG - chr3_1:79860154-79860173 Msa0378970:intron 50.0%
! TGCTGATGCTGATGATGAGG+AGG - chr3_1:79860157-79860176 Msa0378970:intron 50.0%
! TGATGCTGATGATGAGGAGG+AGG - chr3_1:79860160-79860179 Msa0378970:intron 50.0%
GGAAGATGCTGGTGAGAAGA+AGG - chr3_1:79860181-79860200 Msa0378970:intron 50.0%
GTCGTCAGAGAAGAAGAGTC+CGG - chr3_1:79860220-79860239 Msa0378970:intron 50.0%
CTATCACTCGTCGGAGTAAC+CGG + chr3_1:79860242-79860261 None:intergenic 50.0%
! CTAGTTGGCCTATCACTCGT+CGG + chr3_1:79860251-79860270 None:intergenic 50.0%
GACGAGTGATAGGCCAACTA+GGG - chr3_1:79860250-79860269 Msa0378970:intron 50.0%
GTGATAGGCCAACTAGGGAA+AGG - chr3_1:79860255-79860274 Msa0378970:intron 50.0%
GCCAACTAGGGAAAGGAAGA+CGG - chr3_1:79860262-79860281 Msa0378970:intron 50.0%
ACCGTCTTCCTTTCCCTAGT+TGG + chr3_1:79860266-79860285 None:intergenic 50.0%
AACTAGGGAAAGGAAGACGG+TGG - chr3_1:79860265-79860284 Msa0378970:intron 50.0%
!! GTTTGGTGTGTGACACGTTG+GGG + chr3_1:79860657-79860676 None:intergenic 50.0%
!! GAGTTTGGTGTGTGACACGT+TGG + chr3_1:79860659-79860678 None:intergenic 50.0%
ACACACCAAACTCGCCATAC+TGG - chr3_1:79860666-79860685 Msa0378970:intron 50.0%
TGTCACCAGTATGGCGAGTT+TGG + chr3_1:79860674-79860693 None:intergenic 50.0%
GCTATTCCTGAATGGTGGTC+AGG - chr3_1:79861735-79861754 Msa0378970:intron 50.0%
GGAACTGTCTGCAAAGCTGT+TGG - chr3_1:79862184-79862203 Msa0378970:intron 50.0%
GCAACCTCTAGCAAATCTCC+TGG - chr3_1:79862619-79862638 Msa0378970:CDS 50.0%
TCCTGGAGAAACACCTGCAA+AGG - chr3_1:79862636-79862655 Msa0378970:CDS 50.0%
ACCTTTGCAGGTGTTTCTCC+AGG + chr3_1:79862640-79862659 None:intergenic 50.0%
CCACGTGCAACCTTTCAATC+AGG + chr3_1:79862739-79862758 None:intergenic 50.0%
CCTGATTGAAAGGTTGCACG+TGG - chr3_1:79862736-79862755 Msa0378970:intron 50.0%
TACTCCCAACCATTCTGCCT+TGG - chr3_1:79863031-79863050 Msa0378970:CDS 50.0%
GTCATCCAAGGCAGAATGGT+TGG + chr3_1:79863039-79863058 None:intergenic 50.0%
! GCTTTTGGCAGCTTTTGCAG+AGG + chr3_1:79863784-79863803 None:intergenic 50.0%
!! GGTTGCAGGTTGATCTGACT+TGG + chr3_1:79863874-79863893 None:intergenic 50.0%
GGCTGCAAGCAAAACTGCAA+AGG - chr3_1:79863938-79863957 Msa0378970:intron 50.0%
AACTGCAAAGGCTGCGGTTA+AGG - chr3_1:79863950-79863969 Msa0378970:intron 50.0%
AAGGCTGCGGTTAAGGATCA+AGG - chr3_1:79863957-79863976 Msa0378970:intron 50.0%
TGTGATATCCTCCGCCAACT+TGG - chr3_1:79864457-79864476 Msa0378970:CDS 50.0%
! GAAGCTGATAGTGATGGCGA+TGG - chr3_1:79864667-79864686 Msa0378970:CDS 50.0%
! AGCTGATAGTGATGGCGATG+GGG - chr3_1:79864669-79864688 Msa0378970:CDS 50.0%
GATGTCGATGCGGGTAAAGA+TGG - chr3_1:79864691-79864710 Msa0378970:CDS 50.0%
! GTCTAGGGTTTCGGTAGCCA+TGG + chr3_1:79859964-79859983 None:intergenic 55.0%
GATGAGGAGGAGGAAGATGC+TGG - chr3_1:79860170-79860189 Msa0378970:intron 55.0%
CGGTTACTCCGACGAGTGAT+AGG - chr3_1:79860240-79860259 Msa0378970:intron 55.0%
CGACGAGTGATAGGCCAACT+AGG - chr3_1:79860249-79860268 Msa0378970:intron 55.0%
GGTGGGTAAATCAGAGGGAG+AGG - chr3_1:79863662-79863681 Msa0378970:intron 55.0%
AGACCAAGGTAGAGCCGAGT+AGG - chr3_1:79864280-79864299 Msa0378970:intron 55.0%
! AGATCGTACCAAGTTGGCGG+AGG + chr3_1:79864468-79864487 None:intergenic 55.0%
GGGACGTGGTACTCAGCTCA+AGG - chr3_1:79860445-79860464 Msa0378970:intron 60.0%
CTGCCTACTCGGCTCTACCT+TGG + chr3_1:79864286-79864305 None:intergenic 60.0%
CAAGGTAGAGCCGAGTAGGC+AGG - chr3_1:79864284-79864303 Msa0378970:intron 60.0%
GCGTGCATGTCCTGCCTACT+CGG + chr3_1:79864297-79864316 None:intergenic 60.0%
TGGCGATGGGGATGTCGATG+CGG - chr3_1:79864681-79864700 Msa0378970:CDS 60.0%
GGCGATGGGGATGTCGATGC+GGG - chr3_1:79864682-79864701 Msa0378970:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79859628 79865056 79859628 ID=Msa0378970;Name=Msa0378970
chr3_1 mRNA 79859628 79865056 79859628 ID=Msa0378970-mRNA-1;Parent=Msa0378970;Name=Msa0378970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=335|1|1|1|1|1|11|315|529
chr3_1 exon 79859628 79860121 79859628 ID=Msa0378970-mRNA-1:exon:19798;Parent=Msa0378970-mRNA-1
chr3_1 exon 79860206 79860236 79860206 ID=Msa0378970-mRNA-1:exon:19797;Parent=Msa0378970-mRNA-1
chr3_1 exon 79860328 79860425 79860328 ID=Msa0378970-mRNA-1:exon:19796;Parent=Msa0378970-mRNA-1
chr3_1 exon 79860706 79861162 79860706 ID=Msa0378970-mRNA-1:exon:19795;Parent=Msa0378970-mRNA-1
chr3_1 exon 79862027 79862089 79862027 ID=Msa0378970-mRNA-1:exon:19794;Parent=Msa0378970-mRNA-1
chr3_1 exon 79862422 79862502 79862422 ID=Msa0378970-mRNA-1:exon:19793;Parent=Msa0378970-mRNA-1
chr3_1 exon 79862594 79862704 79862594 ID=Msa0378970-mRNA-1:exon:19792;Parent=Msa0378970-mRNA-1
chr3_1 exon 79862868 79862927 79862868 ID=Msa0378970-mRNA-1:exon:19791;Parent=Msa0378970-mRNA-1
chr3_1 exon 79863019 79863098 79863019 ID=Msa0378970-mRNA-1:exon:19790;Parent=Msa0378970-mRNA-1
chr3_1 exon 79864205 79864238 79864205 ID=Msa0378970-mRNA-1:exon:19789;Parent=Msa0378970-mRNA-1
chr3_1 exon 79864326 79865056 79864326 ID=Msa0378970-mRNA-1:exon:19788;Parent=Msa0378970-mRNA-1
chr3_1 five_prime_UTR 79864722 79865056 79864722 ID=Msa0378970-mRNA-1:five_prime_utr;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79864326 79864721 79864326 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79864205 79864238 79864205 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79863019 79863098 79863019 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79862868 79862927 79862868 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79862594 79862704 79862594 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79862422 79862502 79862422 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79862027 79862089 79862027 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79860706 79861162 79860706 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79860328 79860425 79860328 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79860206 79860236 79860206 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 CDS 79859943 79860121 79859943 ID=Msa0378970-mRNA-1:cds;Parent=Msa0378970-mRNA-1
chr3_1 three_prime_UTR 79859628 79859942 79859628 ID=Msa0378970-mRNA-1:three_prime_utr;Parent=Msa0378970-mRNA-1
Gene Sequence

>Msa0378970

ATGGCTACCGAAACCCTAGACGATACCAAACCAAAACAAGTCGAAAACGAAGCCAAAGATGAACCCAAACCAGAAGAAGAAGTTGAAGTAACTGAACAAGACGCGGAAATTGCTGAATCTGATGAGAAGAAAGAGATCGATGAACATGAAGATTCCGAGAAAGATGATGATGATGAAGATGGAGACGAAGACGATGCTGATGCTGATGATGAGGAGGAGGAAGATGCTGGTGAGAAGAAGGGTGTGAAGAAAGAAGCGTCGTCAGAGAAGAAGAGTCCGGTTACTCCGACGAGTGATAGGCCAACTAGGGAAAGGAAGACGGTGGAGCGATACTCCGAACCTTCACCTTCGAAGTTTGGAAGGTCTTCTTCCAGTAAAGGACTGATAATTGAAAAGGGACGTGGTACTCAGCTCAAGGATATTCCTAATGTGGCTTTCAAGTTGTCAAAGAGAAAACCTGATGACAACCTGCATATGCTCCATAGTATACTGTTTGGGAAGAAAACAAAGGTTAACAATCTAAAGAGGAATATAGGCCAGTTTTCTGGTTATGTGTGGGCTGAAAATGAGGAAAAACAGAGAACAAGGGTAAAGGAGAGGATTGACAAATGTGTGAAAGAAAAATTGATTGTCTTCTGCGATGTTCTTAATATTCCAATAAACAAGAGTAGTGTGAAGAAGGAGGAACTGTCTGCAAAGCTGTTGGAATTTCTGGAGTCCCCACATGCTACTACTGATGTTCTTCTTGCTGAAAAAGAACAGAAAGGTAAGAAGCGAGTTAGAAAAGCAACCTCTAGCAAATCTCCTGGAGAAACACCTGCAAAGAAGAAAAAGCAAACTTCAGAATCTGGAAAAAAGCGAAAGCCTTCTGATGTTGAAGAGGATGACCAAGCTGAACTTTCTGATGCAAAAGATGAGTCCCAAGATGAAGATGTTGCAGTGGCAAATAATGGAAGTGATAACGAGGTGGGTAAATCAGAGGGAGAGGAAGATACACCAAAAGCTCACAAGAGTACTTCCAAAAAATCTGTGAAGGAGGGTTCAGTTGCCAAAGCTGAAGCTAAATCCACATCTGTTAAGAAGACCTCTGCAAAAGCTGCCAAAAGCAGTGAAAAAACTCCAAAAAAATCAATACCAAAAAAGTCAATTACCGAGCAGGATTCTGCTTCTCTTTCCAAGTCAGATCAACCTGCAACCAAGATACAAAAAACTGGAAAGGAAAAGCAAGATACTAAGGGAAAGGCTGCAAGCAAAACTGCAAAGGCTGCGGTTAAGGATCAAGGTAAAGGTAAAAGTAGTAAGAAGACCAAGGTAGAGCCGAGTAGGCAGGACATGCACGCAGTTGTAGTTGAGATTCTTAAGGAAGTAGATTTCAATAAGGCAACTTTGTGTGATATCCTCCGCCAACTTGGTAAACATTTTGGCCTTGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATCATCACAGATGTAATTAATAATATGTCTGATGAGGAAGATGAAGGTGAGGAAGAAGCTGATAGTGATGGCGATGGGGATGTCGATGCGGGTAAAGATGGCGACGCCAGTGATGAAGATGAAGAGTAA

Protein sequence

>Msa0378970

MATETLDDTKPKQVENEAKDEPKPEEEVEVTEQDAEIAESDEKKEIDEHEDSEKDDDDEDGDEDDADADDEEEEDAGEKKGVKKEASSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAFKLSKRKPDDNLHMLHSILFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVKEKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSSKSPGETPAKKKKQTSESGKKRKPSDVEEDDQAELSDAKDESQDEDVAVANNGSDNEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPKKSITEQDSASLSKSDQPATKIQKTGKEKQDTKGKAASKTAKAAVKDQGKGKSSKKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVINNMSDEEDEGEEEADSDGDGDVDAGKDGDASDEDEE*