AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173800 MtrunA17_Chr1g0193691 98.318 892 15 0 1 892 1 892 0.0 1825
Msa0173800 MtrunA17_Chr4g0054811 58.769 325 119 4 573 892 462 776 2.30e-114 367
Msa0173800 MtrunA17_Chr4g0054811 38.636 396 135 17 1 358 1 326 8.77e-53 197
Msa0173800 MtrunA17_Chr4g0031521 52.522 337 133 4 555 890 392 702 5.27e-109 351
Msa0173800 MtrunA17_Chr4g0031521 38.108 370 157 11 1 347 1 321 1.43e-56 207
Msa0173800 MtrunA17_Chr7g0238501 45.902 305 104 3 586 890 310 553 2.89e-79 267
Msa0173800 MtrunA17_Chr7g0238501 26.394 269 158 7 98 355 66 305 9.07e-17 84.7
Msa0173800 MtrunA17_Chr4g0039061 45.902 305 106 5 587 891 245 490 2.30e-74 252
Msa0173800 MtrunA17_Chr4g0039061 45.238 84 44 1 286 367 175 258 6.48e-18 87.8
Msa0173800 MtrunA17_Chr4g0067301 35.932 295 138 2 589 883 244 487 4.39e-56 201
Msa0173800 MtrunA17_Chr4g0067301 54.098 61 28 0 289 349 140 200 2.91e-12 70.1
Msa0173800 MtrunA17_Chr2g0295991 47.674 172 90 0 712 883 305 476 1.04e-47 177
Msa0173800 MtrunA17_Chr2g0295991 50.746 67 33 0 289 355 142 208 2.01e-13 73.9
Msa0173800 MtrunA17_Chr1g0213351 28.188 298 149 5 592 884 118 355 5.99e-33 131
Msa0173800 MtrunA17_Chr1g0207571 29.412 306 153 5 592 892 99 346 1.42e-31 127
Msa0173800 MtrunA17_Chr7g0263281 28.904 301 149 5 592 887 109 349 1.38e-29 121
Msa0173800 MtrunA17_Chr1g0181901 26.970 330 147 6 592 887 114 383 2.42e-29 121
Msa0173800 MtrunA17_Chr7g0250061 35.393 178 106 3 715 887 181 354 1.50e-26 112
Msa0173800 MtrunA17_Chr8g0371321 35.393 178 106 3 715 887 184 357 6.63e-26 111
Msa0173800 MtrunA17_Chr1g0211251 38.202 178 101 3 715 887 186 359 7.53e-26 110
Msa0173800 MtrunA17_Chr3g0089691 33.005 203 116 6 696 884 65 261 1.25e-22 99.8
Msa0173800 MtrunA17_Chr7g0223641 39.231 130 71 2 762 883 67 196 2.19e-22 96.3
Msa0173800 MtrunA17_Chr3g0089711 33.005 203 116 6 696 884 151 347 4.89e-22 99.0
Msa0173800 MtrunA17_Chr3g0089721 33.005 203 116 6 696 884 151 347 9.00e-22 98.2
Msa0173800 MtrunA17_Chr1g0175381 31.461 178 113 3 712 884 180 353 1.04e-21 98.6
Msa0173800 MtrunA17_Chr2g0294291 33.333 174 107 3 715 883 181 350 2.73e-21 97.1
Msa0173800 MtrunA17_Chr7g0256751 31.500 200 117 6 696 881 152 345 1.69e-17 86.3
Msa0173800 MtrunA17_Chr7g0256771 32.374 139 86 3 696 826 153 291 1.59e-13 72.8
Msa0173800 MtrunA17_Chr4g0063051 28.652 178 98 5 713 888 163 313 8.28e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173800 AT2G46920.3 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0173800 AT2G46920.1 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0173800 AT2G46920.2 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0173800 AT2G46920.4 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0173800 AT1G07630.1 53.824 340 126 6 555 890 348 660 3.73e-114 364
Msa0173800 AT1G07630.1 39.730 370 145 13 1 347 1 315 1.91e-62 224
Msa0173800 AT2G35350.1 50.131 383 168 8 517 892 414 780 9.17e-109 353
Msa0173800 AT2G35350.1 38.227 361 129 14 25 354 37 334 6.76e-47 180
Msa0173800 AT2G28890.1 55.960 302 110 3 589 890 374 652 8.76e-108 347
Msa0173800 AT2G28890.1 42.033 364 139 13 1 347 1 309 8.13e-64 228
Msa0173800 AT5G02400.1 55.844 308 110 5 584 891 392 673 7.13e-106 342
Msa0173800 AT5G02400.1 36.628 344 132 11 31 349 31 313 1.33e-47 181
Msa0173800 AT3G09400.1 56.209 306 101 5 586 891 377 649 5.69e-105 339
Msa0173800 AT3G09400.1 33.060 366 163 12 1 346 1 304 9.49e-39 154
Msa0173800 AT3G09400.2 52.222 270 96 5 586 855 377 613 4.45e-79 270
Msa0173800 AT3G09400.2 33.060 366 163 12 1 346 1 304 6.88e-39 154
Msa0173800 AT3G16560.1 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa0173800 AT3G16560.4 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa0173800 AT3G16560.2 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa0173800 AT3G16560.3 41.667 144 84 0 712 855 309 452 1.54e-33 135
Msa0173800 AT4G38520.2 29.831 295 142 5 592 881 119 353 8.57e-33 132
Msa0173800 AT4G38520.1 29.831 295 142 5 592 881 119 353 8.57e-33 132
Msa0173800 AT3G12620.2 28.165 316 161 6 577 887 107 361 6.24e-31 126
Msa0173800 AT3G12620.1 28.165 316 161 6 577 887 107 361 6.24e-31 126
Msa0173800 AT5G06750.2 26.578 301 159 4 592 887 38 281 8.86e-29 118
Msa0173800 AT5G06750.3 26.578 301 159 4 592 887 120 363 3.36e-28 118
Msa0173800 AT5G06750.1 26.578 301 159 4 592 887 120 363 3.36e-28 118
Msa0173800 AT3G55050.1 37.288 177 102 3 712 883 186 358 1.09e-27 116
Msa0173800 AT3G55050.2 37.288 177 102 3 712 883 186 358 1.09e-27 116
Msa0173800 AT3G51370.2 35.429 175 104 3 715 884 99 269 6.58e-27 112
Msa0173800 AT5G66080.2 37.079 178 103 3 712 884 80 253 1.31e-26 110
Msa0173800 AT3G17090.1 36.364 176 103 3 713 883 187 358 3.72e-26 112
Msa0173800 AT3G51370.1 35.429 175 104 3 715 884 184 354 5.38e-26 111
Msa0173800 AT3G51370.3 35.429 175 104 3 715 884 184 354 5.38e-26 111
Msa0173800 AT5G66080.1 37.079 178 103 3 712 884 184 357 1.34e-25 110
Msa0173800 AT5G02760.1 39.205 176 98 3 713 883 173 344 5.12e-24 105
Msa0173800 AT4G33920.3 34.286 175 106 3 715 884 56 226 3.78e-23 100
Msa0173800 AT4G33920.2 34.286 175 106 3 715 884 86 256 7.04e-23 100
Msa0173800 AT4G33920.1 34.286 175 106 3 715 884 169 339 2.98e-22 100
Msa0173800 AT3G17090.2 37.069 116 68 2 713 823 187 302 2.87e-17 84.3

Find 272 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGAGCTTTCTTATTTA+TGG 0.115163 1_4:+59145677 None:intergenic
TCTCTTTCTTTCTTCTTTCT+TGG 0.148286 1_4:+59152567 None:intergenic
TTTCAGGGACTTCGGGTTTA+AGG 0.173499 1_4:+59150850 None:intergenic
ATCAAGACAATATGCAAATA+TGG 0.178352 1_4:+59145811 None:intergenic
CTTCTTCATTGCTGAAATAT+TGG 0.212752 1_4:+59147766 None:intergenic
CATGTTTGCTGGTGATTTCT+TGG 0.218670 1_4:-59151546 Msa0173800:CDS
AAATCCAGAACTTGCTATAA+TGG 0.219054 1_4:-59150073 Msa0173800:CDS
AATAATAATAATTGGAGATT+TGG 0.224260 1_4:+59152491 None:intergenic
ACTACGTTTAAGACGATTTC+AGG 0.226435 1_4:-59151626 Msa0173800:CDS
CAGCCAGTTCCACGCGGTTC+TGG 0.228026 1_4:-59151473 Msa0173800:CDS
GATTGATCCTTGATTAATTC+AGG 0.235778 1_4:+59150732 None:intergenic
GAACAAGGGTGGTTGTTTAT+TGG 0.236233 1_4:-59150993 Msa0173800:CDS
GGGAGATAGTCGTGTGATTT+TGG 0.243703 1_4:-59149995 Msa0173800:CDS
GATTTCTAAAATCAATTTAC+TGG 0.245549 1_4:+59145771 None:intergenic
GAGTAATAATGGGGTGGTTA+TGG 0.255294 1_4:-59152028 Msa0173800:five_prime_UTR
GAAAAGGTAAAAGAAGTTTA+AGG 0.257265 1_4:-59150587 Msa0173800:CDS
ATCTGTCATGGTCGTTTCTT+TGG 0.260064 1_4:-59145927 Msa0173800:CDS
AACAAGGGTGGTTGTTTATT+GGG 0.261849 1_4:-59150992 Msa0173800:CDS
CTCTTTCTTTCTTCTTTCTT+GGG 0.265047 1_4:+59152568 None:intergenic
GGGTAAATTCAAAACAAATT+AGG 0.279468 1_4:+59145699 None:intergenic
CATGGTCAAGTGAGTAATAA+TGG 0.297271 1_4:-59152039 Msa0173800:five_prime_UTR
ATCGTCTTAAACGTAGTTTC+AGG 0.297907 1_4:+59151632 None:intergenic
ATGGAGCATTCTAATTCTTC+TGG 0.301105 1_4:-59151680 Msa0173800:CDS
AGTAATAATGGGGTGGTTAT+GGG 0.306325 1_4:-59152027 Msa0173800:five_prime_UTR
TTCTTCAAGTGACCGATTCT+TGG 0.307365 1_4:-59147811 Msa0173800:CDS
GGGGTGGTTATGGGGTTTGA+TGG 0.308122 1_4:-59152018 Msa0173800:five_prime_UTR
AATCCAGAACTTGCTATAAT+GGG 0.309261 1_4:-59150072 Msa0173800:CDS
TTAACAGAGAAGCACTTAAA+AGG 0.310457 1_4:+59145851 None:intergenic
TTAAGAGCTTTCTTATTTAT+GGG 0.310990 1_4:+59145678 None:intergenic
AGAAGTGGTGGTTTCATGTC+TGG 0.317726 1_4:-59151389 Msa0173800:CDS
TTAAAAGTTACCAGAGCATT+TGG 0.331448 1_4:-59148990 Msa0173800:CDS
AGCTACTTCAAATGGAATCT+TGG 0.332616 1_4:-59150557 Msa0173800:CDS
TATTGTGCAGGATCGCCTTC+TGG 0.333824 1_4:+59147708 None:intergenic
ATTAAACAATAACCTTGAAA+TGG 0.336830 1_4:-59152266 Msa0173800:five_prime_UTR
TCTTGATATTGAAACAATCT+TGG 0.339496 1_4:-59145795 Msa0173800:three_prime_UTR
CGCGGTTCTGGACCTTTGAA+TGG 0.340155 1_4:-59151461 Msa0173800:CDS
TTTCTTTGGAGGGAAGGATT+TGG 0.340333 1_4:-59145913 Msa0173800:CDS
TTTCACTCGATCATTCAATA+TGG 0.340343 1_4:+59149019 None:intergenic
AGGTTATTGTTTAATTTGAT+TGG 0.342556 1_4:+59152274 None:intergenic
AGATGTTTATGTCATGAATC+TGG 0.343955 1_4:-59150016 Msa0173800:CDS
GAGCCATTAGATGAAGGTTT+AGG 0.346607 1_4:-59151836 Msa0173800:CDS
GACCCCATTATAGCAAGTTC+TGG 0.349623 1_4:+59150069 None:intergenic
TCCTTTGATCTGACCCTTTG+AGG 0.354335 1_4:-59152162 Msa0173800:five_prime_UTR
AGGGAAAGGCCGGTGAAGAT+AGG 0.358505 1_4:-59151037 Msa0173800:CDS
GAAAATGGAAGCACTGGGTT+TGG 0.360276 1_4:-59150408 Msa0173800:CDS
TCAAGACAATATGCAAATAT+GGG 0.366055 1_4:+59145812 None:intergenic
TTCAGGGACTTCGGGTTTAA+GGG 0.372236 1_4:+59150851 None:intergenic
CCGTCTACATCAGGGGAAAA+TGG 0.373824 1_4:-59150423 Msa0173800:CDS
TCTTTCCTTGGAGTTATGAT+TGG 0.374905 1_4:-59150260 Msa0173800:CDS
ATTTCCGACCGACTGGATTC+TGG 0.375849 1_4:+59150807 None:intergenic
TTTAAAGTTTCAGGGACTTC+GGG 0.377366 1_4:+59150843 None:intergenic
TTTGTATTTGTATTTGTTGA+GGG 0.384181 1_4:-59151971 Msa0173800:five_prime_UTR
TAGATTTCTAGACAAAGAAT+TGG 0.384327 1_4:-59150913 Msa0173800:CDS
AACAGCTTCGTGCTCCTTGT+TGG 0.386048 1_4:+59150380 None:intergenic
GTGTTTCAAGTTAAATATAT+CGG 0.387374 1_4:-59147882 Msa0173800:CDS
GAACCTGCTGCTTCGTTTGA+GGG 0.388487 1_4:-59151524 Msa0173800:CDS
TACTTCCACAATTAGATAAC+TGG 0.389161 1_4:+59150655 None:intergenic
GGTCCAGAACCGCGTGGAAC+TGG 0.389417 1_4:+59151470 None:intergenic
TTCTTCTGGTTTACACAAGC+AGG 0.391131 1_4:-59151666 Msa0173800:CDS
AAACCTTGAGTGGTTCGTTT+AGG 0.394527 1_4:-59151712 Msa0173800:CDS
TCCTTGACAGAGCTTGAATT+AGG 0.400913 1_4:+59149946 None:intergenic
AGAAGAGAAGCTCTGCAATA+AGG 0.401305 1_4:+59147685 None:intergenic
GGAACCTGCTGCTTCGTTTG+AGG 0.404499 1_4:-59151525 Msa0173800:CDS
CATGAAAAGTTGACTGGAAA+AGG 0.406487 1_4:-59150603 Msa0173800:CDS
TTGGAGAGAGGCTTTGCCTC+AGG 0.406640 1_4:-59151422 Msa0173800:CDS
GCATAATCTGCAGTGGGCTC+AGG 0.409987 1_4:-59151057 Msa0173800:CDS
AACGGCACTTCTCGTGTTGT+TGG 0.410651 1_4:-59151908 Msa0173800:CDS
GGCCATGCCAACTGAGTAAC+CGG 0.412628 1_4:+59151164 None:intergenic
TGTCCTAAACCTTCATCTAA+TGG 0.414208 1_4:+59151833 None:intergenic
AAGAATTGGAAGGTTTACTT+TGG 0.414277 1_4:-59150899 Msa0173800:CDS
GCAAAGGTTGTTCTTTCAAC+CGG 0.415006 1_4:-59151183 Msa0173800:CDS
TCTTGATAACATGATTGTTA+TGG 0.415311 1_4:+59149839 None:intergenic
CGGCCTACACTTAGTATCTC+TGG 0.415577 1_4:+59151139 None:intergenic
GCTTTATGAGCTACTTCAAA+TGG 0.418404 1_4:-59150565 Msa0173800:CDS
TGATTGTTATGGTTGTGAAT+TGG 0.419136 1_4:+59149850 None:intergenic
GATGAAGGCCCGTCTACATC+AGG 0.424284 1_4:-59150432 Msa0173800:CDS
GGGTGGTTATGGGGTTTGAT+GGG 0.424314 1_4:-59152017 Msa0173800:five_prime_UTR
CTTGATATTGAAACAATCTT+GGG 0.428125 1_4:-59145794 Msa0173800:three_prime_UTR
TTAAACAATAACCTTGAAAT+GGG 0.428739 1_4:-59152265 Msa0173800:five_prime_UTR
AGAATTGGAAGGTTTACTTT+GGG 0.429016 1_4:-59150898 Msa0173800:CDS
AAAACACTCTTTACCTCAAA+GGG 0.430978 1_4:+59152149 None:intergenic
CAATGAGATAGTTGAGGAAA+AGG 0.433095 1_4:-59150703 Msa0173800:CDS
TGTGTAAGAAACTCTTTCCT+TGG 0.434759 1_4:-59150272 Msa0173800:CDS
CCTATTAGAAAATGCAGGTC+TGG 0.442699 1_4:-59150189 Msa0173800:CDS
TTCGTTTAGGCATGATAGTA+TGG 0.443765 1_4:-59151699 Msa0173800:CDS
CGCAAGTGGTGCCGAAAAGT+TGG 0.445340 1_4:+59151316 None:intergenic
GCTACTTCAAATGGAATCTT+GGG 0.449531 1_4:-59150556 Msa0173800:CDS
TTCTTGGTACTCTCCTCTGA+TGG 0.453141 1_4:-59147795 Msa0173800:CDS
AATATGGCCTGACTATCATC+AGG 0.454667 1_4:+59149035 None:intergenic
TGTCATGGTCGTTTCTTTGG+AGG 0.454997 1_4:-59145924 Msa0173800:CDS
TTGTTTAATTTGATTGGTGA+TGG 0.456228 1_4:+59152280 None:intergenic
GGAAACGGCGGAGAATAATC+TGG 0.457804 1_4:-59150100 Msa0173800:CDS
AACCAGAGTGCCATGTTTGC+TGG 0.458335 1_4:-59151557 Msa0173800:CDS
AAACACAAGGGCAGCAGTAA+AGG 0.460107 1_4:+59145646 None:intergenic
AGGCTTTGCCTCAGGTCCAT+TGG 0.460532 1_4:-59151414 Msa0173800:CDS
CATCTCATGAGAAGTGTTAG+TGG 0.460965 1_4:-59151266 Msa0173800:CDS
TTCTGGTCCTGAATTAATCA+AGG 0.463926 1_4:-59150739 Msa0173800:CDS
ATCAGACATTTCCGACCGAC+TGG 0.465386 1_4:+59150800 None:intergenic
GTTACCAGAGCATTTGGCGC+TGG 0.466936 1_4:-59148984 Msa0173800:CDS
CGAGAAAACGTGTTCTTCAC+CGG 0.469877 1_4:+59151242 None:intergenic
GTTCAACATGAAAAGTTGAC+TGG 0.470671 1_4:-59150609 Msa0173800:CDS
CTTGGAGTTATGATTGGCAT+AGG 0.472134 1_4:-59150254 Msa0173800:CDS
TGCCCATGTCACATGGTTCA+TGG 0.473613 1_4:-59147739 Msa0173800:CDS
GTTTATGTCTCAATGATTCA+AGG 0.473669 1_4:-59152333 Msa0173800:five_prime_UTR
GGAACATACCTCTTCAATAC+TGG 0.475850 1_4:+59149744 None:intergenic
ACAAGTAGGTTGAAGGGGAC+AGG 0.476334 1_4:+59152356 None:intergenic
CTACGTTTAAGACGATTTCA+GGG 0.478288 1_4:-59151625 Msa0173800:CDS
TCAGGGGAAAATGGAAGCAC+TGG 0.478893 1_4:-59150414 Msa0173800:CDS
TTACCAGAGCATTTGGCGCT+GGG 0.480372 1_4:-59148983 Msa0173800:CDS
AGAACACCCTGATGATAGTC+AGG 0.480584 1_4:-59149042 Msa0173800:CDS
GTTTGTATTTGTATTTGTTG+AGG 0.480678 1_4:-59151972 Msa0173800:five_prime_UTR
TTGTTTATTGGGATATATGA+CGG 0.481266 1_4:-59150981 Msa0173800:CDS
AGTTTCTTACACAAGGACTT+TGG 0.483606 1_4:+59150282 None:intergenic
ATGGTCAAGTGAGTAATAAT+GGG 0.484486 1_4:-59152038 Msa0173800:five_prime_UTR
TCTTGGTACTCTCCTCTGAT+GGG 0.485583 1_4:-59147794 Msa0173800:CDS
GAGAAAATATTAGAAGCCTC+TGG 0.488265 1_4:-59150213 Msa0173800:CDS
AGAAGATGGCTCTAAACATC+AGG 0.492537 1_4:-59150454 Msa0173800:CDS
TCGTCTTAAACGTAGTTTCA+GGG 0.494913 1_4:+59151633 None:intergenic
GTACAGAAGGAGTGCAACTT+AGG 0.495852 1_4:+59147847 None:intergenic
CATAAACACAAGTAGGTTGA+AGG 0.496059 1_4:+59152349 None:intergenic
CCGCGTGGAACTGGCTGCAA+AGG 0.496825 1_4:+59151479 None:intergenic
GGAAGGATTTGGAGATCATC+GGG 0.497013 1_4:-59145902 Msa0173800:CDS
TTTAATTTGATTGGTGATGG+TGG 0.497367 1_4:+59152283 None:intergenic
GAACCCAGCGCCAAATGCTC+TGG 0.499040 1_4:+59148980 None:intergenic
AAGAACAGAAGAGGCATACA+TGG 0.499922 1_4:-59150121 Msa0173800:CDS
CTTTCAACCGGTTACTCAGT+TGG 0.503085 1_4:-59151171 Msa0173800:CDS
GTCATGGTCGTTTCTTTGGA+GGG 0.503413 1_4:-59145923 Msa0173800:CDS
GAAGTGGTGGTTTCATGTCT+GGG 0.504538 1_4:-59151388 Msa0173800:CDS
ATGTCTGGTCCTTTGGAGAG+AGG 0.507990 1_4:-59151434 Msa0173800:CDS
AACATTCTCTAAGCACTCCA+TGG 0.508300 1_4:-59151219 Msa0173800:CDS
ATCAAGAGTGCTTGAATCAA+CGG 0.509625 1_4:+59151739 None:intergenic
GATGTTTATGTCATGAATCT+GGG 0.511586 1_4:-59150015 Msa0173800:CDS
TGGTCGTTTCTTTGGAGGGA+AGG 0.514079 1_4:-59145919 Msa0173800:CDS
GTAATAATGGGGTGGTTATG+GGG 0.514967 1_4:-59152026 Msa0173800:five_prime_UTR
AGCACTCCATGGGTGGAAGT+TGG 0.516622 1_4:-59151208 Msa0173800:CDS
TGTCTAGAAATCTATAAAGA+TGG 0.517327 1_4:+59150922 None:intergenic
TCGTCTACTGTAAGAGAAGA+TGG 0.519430 1_4:-59150468 Msa0173800:CDS
TCGGGTTTAAGGGAATCTAC+AGG 0.519852 1_4:+59150861 None:intergenic
GCAGGAGATTCAAACATAGT+TGG 0.520083 1_4:+59151791 None:intergenic
AGTGTAGGCCGGACATCTCT+AGG 0.520773 1_4:-59151127 Msa0173800:CDS
TGGCGCTGGGTTCTTGAAGA+GGG 0.522136 1_4:-59148970 Msa0173800:intron
TTCTGCCTTGATACAGAAGC+AGG 0.522225 1_4:+59150354 None:intergenic
TTGATATTCCTCATGGAGAT+CGG 0.526663 1_4:-59145970 Msa0173800:CDS
TCAAAACAAATTAGGACTGG+TGG 0.527155 1_4:+59145707 None:intergenic
GGGAAAGGCCGGTGAAGATA+GGG 0.528809 1_4:-59151036 Msa0173800:CDS
GGTTGTTTAGTGCCATTCAA+TGG 0.531093 1_4:-59151887 Msa0173800:CDS
CAGTGGGCTCAGGGAAAGGC+CGG 0.533471 1_4:-59151047 Msa0173800:CDS
TTGGCGCTGGGTTCTTGAAG+AGG 0.534380 1_4:-59148971 Msa0173800:CDS
CTTGATTCTGAAACCTTGAG+TGG 0.534406 1_4:-59151722 Msa0173800:CDS
ACCGTCCCGTGTCCTTTGAT+AGG 0.537516 1_4:-59152545 Msa0173800:five_prime_UTR
TCTGCAGTGGGCTCAGGGAA+AGG 0.538895 1_4:-59151051 Msa0173800:CDS
TAGAGAGTCATTAGTACGCA+TGG 0.542192 1_4:-59149899 Msa0173800:CDS
CAGAGGAGAGTACCAAGAAT+CGG 0.545943 1_4:+59147799 None:intergenic
GGCTCTAAACATCAGGATGA+AGG 0.546035 1_4:-59150447 Msa0173800:CDS
CCACAGTTCCTAGAGATGTC+CGG 0.547445 1_4:+59151119 None:intergenic
GGGAAGGATTTGGAGATCAT+CGG 0.548516 1_4:-59145903 Msa0173800:CDS
CATGTCTGGGCCGATAGAGA+AGG 0.548519 1_4:-59151375 Msa0173800:CDS
GAATTCGATGGACTAATAGC+AGG 0.549082 1_4:+59151773 None:intergenic
ACCTCAAAGGGTCAGATCAA+AGG 0.549244 1_4:+59152161 None:intergenic
ATGTCTGGGCCGATAGAGAA+GGG 0.549805 1_4:-59151374 Msa0173800:CDS
TCCTAATTCAAGCTCTGTCA+AGG 0.550425 1_4:-59149947 Msa0173800:CDS
TTTCCATGAACCATGTGACA+TGG 0.550559 1_4:+59147736 None:intergenic
CAAGAAATCACCAGCAAACA+TGG 0.551763 1_4:+59151547 None:intergenic
GAACAAAGATTGAGACAAAG+AGG 0.551861 1_4:+59152405 None:intergenic
GAACTGCTTGATATTCCTCA+TGG 0.552205 1_4:-59145977 Msa0173800:CDS
TCTTCTGGTTTACACAAGCA+GGG 0.552435 1_4:-59151665 Msa0173800:CDS
AACCGGTTACTCAGTTGGCA+TGG 0.552985 1_4:-59151166 Msa0173800:CDS
CTCCTACGACCACGCGCAAG+TGG 0.552988 1_4:+59151302 None:intergenic
AATGTTTCCACAGCAAGGAC+AGG 0.553085 1_4:-59151587 Msa0173800:CDS
TACATGAACCCTATCTTCAC+CGG 0.553678 1_4:+59151028 None:intergenic
CATAATCTGCAGTGGGCTCA+GGG 0.555002 1_4:-59151056 Msa0173800:CDS
TAAGAGCTTTCTTATTTATG+GGG 0.555187 1_4:+59145679 None:intergenic
TTTCTAGACAAAGAATTGGA+AGG 0.556075 1_4:-59150909 Msa0173800:CDS
TTGGAGTTATGATTGGCATA+GGG 0.556902 1_4:-59150253 Msa0173800:CDS
GAACACCAGTTATCTAATTG+TGG 0.557159 1_4:-59150660 Msa0173800:CDS
TGACAGAGCTTGAATTAGGA+TGG 0.557579 1_4:+59149950 None:intergenic
TGTCCTTGCTGTGGAAACAT+TGG 0.558283 1_4:+59151589 None:intergenic
ATTGAGACATAAACACAAGT+AGG 0.558791 1_4:+59152342 None:intergenic
CATGAGAAGTGTTAGTGGAC+CGG 0.559099 1_4:-59151261 Msa0173800:CDS
GAAGGAGTGCAACTTAGGTA+AGG 0.559882 1_4:+59147852 None:intergenic
TGTTTATACTCAGCTTCATA+CGG 0.562140 1_4:+59151083 None:intergenic
CAAGACAATATGCAAATATG+GGG 0.562381 1_4:+59145813 None:intergenic
CCTCTTCAATACTGGTGCTG+TGG 0.563096 1_4:+59149752 None:intergenic
GTTCCCTCAAACGAAGCAGC+AGG 0.565776 1_4:+59151521 None:intergenic
TTCTCTAAGCACTCCATGGG+TGG 0.568004 1_4:-59151215 Msa0173800:CDS
TTGCATCCAACTTCCACCCA+TGG 0.569523 1_4:+59151202 None:intergenic
AATTCAAAACAAATTAGGAC+TGG 0.569768 1_4:+59145704 None:intergenic
TAATGATTCCTCAGTTCCGA+TGG 0.572372 1_4:-59150523 Msa0173800:CDS
AGCTCTTGAAAGAACAGAAG+AGG 0.572536 1_4:-59150130 Msa0173800:CDS
TAGTACGCATGGAGCTCGAT+AGG 0.574316 1_4:-59149888 Msa0173800:CDS
AGTCGATGGTGAAGTACAGA+AGG 0.575455 1_4:+59147834 None:intergenic
TTCCATGAACCATGTGACAT+GGG 0.576524 1_4:+59147737 None:intergenic
ATATTTCAGCAATGAAGAAG+TGG 0.576694 1_4:-59147763 Msa0173800:CDS
CTGGACCTATTAGAAAATGC+AGG 0.576782 1_4:-59150194 Msa0173800:CDS
CACCACTTGCGCGTGGTCGT+AGG 0.578737 1_4:-59151304 Msa0173800:CDS
AGAAGAGGCATACATGGAAA+CGG 0.579428 1_4:-59150115 Msa0173800:CDS
TCACGATGATGTATCTGTCA+TGG 0.582123 1_4:-59145939 Msa0173800:CDS
CACTTGCGCGTGGTCGTAGG+AGG 0.582141 1_4:-59151301 Msa0173800:CDS
CACCAGCAAACATGGCACTC+TGG 0.582390 1_4:+59151555 None:intergenic
ATAAACACAAGTAGGTTGAA+GGG 0.583940 1_4:+59152350 None:intergenic
AAACCACCACTTCTATCCAA+TGG 0.584898 1_4:+59151398 None:intergenic
ATATTGAATGATCGAGTGAA+AGG 0.587589 1_4:-59149017 Msa0173800:CDS
GTGCCAATGTTTCCACAGCA+AGG 0.588563 1_4:-59151592 Msa0173800:CDS
ATGCCTAAACGAACCACTCA+AGG 0.588964 1_4:+59151709 None:intergenic
CAGAGATACTAAGTGTAGGC+CGG 0.591967 1_4:-59151138 Msa0173800:CDS
ATGAAGGCCCGTCTACATCA+GGG 0.593568 1_4:-59150431 Msa0173800:CDS
ACCGCCACCTGTCCTTGCTG+TGG 0.597591 1_4:+59151580 None:intergenic
TCCACAGCAAGGACAGGTGG+CGG 0.597778 1_4:-59151581 Msa0173800:CDS
CCACAGCACCAGTATTGAAG+AGG 0.599719 1_4:-59149752 Msa0173800:intron
GAGGCAAAGCCTCTCTCCAA+AGG 0.600093 1_4:+59151425 None:intergenic
CTATGCCAATCATAACTCCA+AGG 0.602658 1_4:+59150255 None:intergenic
CAGGGGAAAATGGAAGCACT+GGG 0.604592 1_4:-59150413 Msa0173800:CDS
TGCTCCAGAATCCAGTCGGT+CGG 0.605509 1_4:-59150811 Msa0173800:CDS
CAAGTAGGTTGAAGGGGACA+GGG 0.605511 1_4:+59152357 None:intergenic
ATTTAACAATGAGATAGTTG+AGG 0.605777 1_4:-59150709 Msa0173800:CDS
TCCTATCAAAGGACACGGGA+CGG 0.605839 1_4:+59152544 None:intergenic
TCTGCAATAAGGTATTGTGC+AGG 0.607567 1_4:+59147696 None:intergenic
GATTTATCAGTGTCATCAAG+AGG 0.609649 1_4:+59151338 None:intergenic
TTCTTTCTGAAGAACAAGGG+TGG 0.610228 1_4:-59151004 Msa0173800:CDS
AAGTGGTTGCCCATGTCACA+TGG 0.611403 1_4:-59147746 Msa0173800:CDS
GTAGTTCTTTCTGAAGAACA+AGG 0.612578 1_4:-59151008 Msa0173800:CDS
AGGAAAGAGTTTCTTACACA+AGG 0.612990 1_4:+59150275 None:intergenic
GGTCCATTGGATAGAAGTGG+TGG 0.613640 1_4:-59151401 Msa0173800:CDS
TGGGTTTGGTTCAACCAACA+AGG 0.615592 1_4:-59150394 Msa0173800:CDS
TGTTCTAGTGATGTTGATGA+AGG 0.616258 1_4:-59150043 Msa0173800:CDS
GTAAACCTCTCAGAATTCGA+TGG 0.616459 1_4:+59151761 None:intergenic
CAGCGTTGAGATCCTATCAA+AGG 0.617080 1_4:+59152533 None:intergenic
TAAACACAAGTAGGTTGAAG+GGG 0.620622 1_4:+59152351 None:intergenic
ACATTCTCTAAGCACTCCAT+GGG 0.625166 1_4:-59151218 Msa0173800:CDS
TCAGGTCCATTGGATAGAAG+TGG 0.629020 1_4:-59151404 Msa0173800:CDS
ATCCAGAACTTGCTATAATG+GGG 0.629741 1_4:-59150071 Msa0173800:CDS
CTCATGAGATGTTGTAGACG+CGG 0.630558 1_4:+59151278 None:intergenic
AGTAGAGCTTCGTTAAAAGA+CGG 0.635257 1_4:+59147909 None:intergenic
CCGACTGGATTCTGGAGCAA+CGG 0.636821 1_4:+59150815 None:intergenic
TGGGTGGAAGTTGGATGCAA+AGG 0.637203 1_4:-59151199 Msa0173800:CDS
AACACACGCATAATCTGCAG+TGG 0.639874 1_4:-59151064 Msa0173800:CDS
GGGAATTTGATGATGATGCA+TGG 0.640341 1_4:-59152057 Msa0173800:five_prime_UTR
GTTTCCACAGCAAGGACAGG+TGG 0.641159 1_4:-59151584 Msa0173800:CDS
TATTGACTCCATCGGAACTG+AGG 0.647628 1_4:+59150515 None:intergenic
TTCATGGAAAATGTTCCAGA+AGG 0.647918 1_4:-59147723 Msa0173800:CDS
TCTCTTACAGTAGACGAGCA+AGG 0.648174 1_4:+59150474 None:intergenic
ATTTGCAAAATGATATCTCG+CGG 0.648758 1_4:+59149806 None:intergenic
GGTCACTTGAAGAAAGTCGA+TGG 0.652423 1_4:+59147820 None:intergenic
TGAGATCCTATCAAAGGACA+CGG 0.653123 1_4:+59152539 None:intergenic
TAGTTCTTTCTGAAGAACAA+GGG 0.654250 1_4:-59151007 Msa0173800:CDS
GTCTGGGCCGATAGAGAAGG+GGG 0.654295 1_4:-59151372 Msa0173800:CDS
CCAGACATAAAACCATTCAA+AGG 0.654611 1_4:+59151449 None:intergenic
TCATCTAGTATTGACTCCAT+CGG 0.655797 1_4:+59150507 None:intergenic
CTACACTTAGTATCTCTGGA+AGG 0.659028 1_4:+59151143 None:intergenic
CTTCCAGAGATACTAAGTGT+AGG 0.659308 1_4:-59151142 Msa0173800:CDS
TGTCTGGGCCGATAGAGAAG+GGG 0.661460 1_4:-59151373 Msa0173800:CDS
CCGTTGCTCCAGAATCCAGT+CGG 0.662617 1_4:-59150815 Msa0173800:CDS
TACGTTTAAGACGATTTCAG+GGG 0.663223 1_4:-59151624 Msa0173800:CDS
TTAGTCCATCGAATTCTGAG+AGG 0.663493 1_4:-59151766 Msa0173800:CDS
GGAGCTCGATAGGATTTCAG+AGG 0.668955 1_4:-59149878 Msa0173800:CDS
TCAAGTGAGTAATAATGGGG+TGG 0.669097 1_4:-59152034 Msa0173800:five_prime_UTR
ACTTCTATCCAATGGACCTG+AGG 0.670903 1_4:+59151406 None:intergenic
TGAAGGCCCGTCTACATCAG+GGG 0.674161 1_4:-59150430 Msa0173800:CDS
ACACACGCATAATCTGCAGT+GGG 0.674769 1_4:-59151063 Msa0173800:CDS
CCGGACATCTCTAGGAACTG+TGG 0.684188 1_4:-59151119 Msa0173800:CDS
ATATTGGTAAAGCCCATCAG+AGG 0.686480 1_4:+59147782 None:intergenic
AGAGGCATACATGGAAACGG+CGG 0.688502 1_4:-59150112 Msa0173800:CDS
GCTCTGTCAAGGATGACATG+AGG 0.690355 1_4:-59149936 Msa0173800:CDS
GAATCTACAGATGAAACACA+AGG 0.690442 1_4:+59145633 None:intergenic
ATATGGCCTGACTATCATCA+GGG 0.691171 1_4:+59149036 None:intergenic
AAGACAATATGCAAATATGG+GGG 0.695027 1_4:+59145814 None:intergenic
GAGATCCTATCAAAGGACAC+GGG 0.711438 1_4:+59152540 None:intergenic
CCTTTGCAGCCAGTTCCACG+CGG 0.712203 1_4:-59151479 Msa0173800:CDS
TATTTACGCCGATCTCCATG+AGG 0.738087 1_4:+59145962 None:intergenic
AATCTACAGATGAAACACAA+GGG 0.746562 1_4:+59145634 None:intergenic
TGGTCAAGTGAGTAATAATG+GGG 0.749924 1_4:-59152037 Msa0173800:five_prime_UTR
TTCAAAGGTCCAGAACCGCG+TGG 0.762211 1_4:+59151464 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATAAT+TGG + chr1_4:59145734-59145753 None:intergenic 0.0%
!! CTATATTTAAAAAGAAAAAA+AGG + chr1_4:59145760-59145779 None:intergenic 10.0%
!!! AATATTCTATATCTAAAATT+TGG - chr1_4:59148565-59148584 Msa0173800:intron 10.0%
!!! TTTTTTTATATAATCATCAA+AGG + chr1_4:59149768-59149787 None:intergenic 10.0%
!!! AGTAAATTTTAATTTTAACT+TGG - chr1_4:59150634-59150653 Msa0173800:CDS 10.0%
!! AATAATAATAATTGGAGATT+TGG + chr1_4:59145726-59145745 None:intergenic 15.0%
!!! ATTTTGTGCAATAATAAAAA+TGG - chr1_4:59146281-59146300 Msa0173800:intron 15.0%
!!! TTTTGTGCAATAATAAAAAT+GGG - chr1_4:59146282-59146301 Msa0173800:intron 15.0%
!! AATTCAAAAAAGTCATTTAT+CGG - chr1_4:59147881-59147900 Msa0173800:CDS 15.0%
!! CAAAAATTAAAAAAATGTAC+AGG - chr1_4:59147906-59147925 Msa0173800:CDS 15.0%
!!! ATTTTGCAAATTAAAAATGA+GGG - chr1_4:59148420-59148439 Msa0173800:intron 15.0%
!! TTATATAAACTATAGACAAA+GGG + chr1_4:59149319-59149338 None:intergenic 15.0%
!!! TTAAAGATTTTCTTATATCT+AGG + chr1_4:59149700-59149719 None:intergenic 15.0%
!! TTAGTGATCAAAAAAATAAA+AGG + chr1_4:59149794-59149813 None:intergenic 15.0%
!! AAAAAAATTAGGGTTAAAAA+AGG + chr1_4:59150276-59150295 None:intergenic 15.0%
!! AAATTATGAAAAACTTGAAA+GGG + chr1_4:59150663-59150682 None:intergenic 15.0%
!! AAAATTATGAAAAACTTGAA+AGG + chr1_4:59150664-59150683 None:intergenic 15.0%
!!! TTTCTATTCTAAAATTAAGT+TGG - chr1_4:59150786-59150805 Msa0173800:CDS 15.0%
!! ACATAATATCAATACTAATA+AGG - chr1_4:59152076-59152095 Msa0173800:five_prime_UTR 15.0%
!! CATAATATCAATACTAATAA+GGG - chr1_4:59152077-59152096 Msa0173800:five_prime_UTR 15.0%
!!! AAATATTTAATTTAGGATTG+AGG + chr1_4:59152157-59152176 None:intergenic 15.0%
!! AATCCTAAATTAAATATTTG+AGG - chr1_4:59152158-59152177 Msa0173800:five_prime_UTR 15.0%
!!! AAACCTCAAATATTTAATTT+AGG + chr1_4:59152164-59152183 None:intergenic 15.0%
!! GATGAAAGAAAAAAAAAATA+AGG + chr1_4:59152344-59152363 None:intergenic 15.0%
!!! AGAAAAAAATGTGATGTTTT+TGG + chr1_4:59145786-59145805 None:intergenic 20.0%
!!! AGGTTATTGTTTAATTTGAT+TGG + chr1_4:59145943-59145962 None:intergenic 20.0%
!! ATTAAACAATAACCTTGAAA+TGG - chr1_4:59145948-59145967 Msa0173800:CDS 20.0%
!! TTAAACAATAACCTTGAAAT+GGG - chr1_4:59145949-59145968 Msa0173800:CDS 20.0%
!! TACTGTTGAAAAATTCATAT+GGG - chr1_4:59146108-59146127 Msa0173800:intron 20.0%
!!! TTTGTATTTGTATTTGTTGA+GGG - chr1_4:59146243-59146262 Msa0173800:intron 20.0%
!!! CATTTTGCAAATTAAAAATG+AGG - chr1_4:59148419-59148438 Msa0173800:intron 20.0%
!!! TGAAGATCTGAAAATTTTTA+TGG - chr1_4:59148600-59148619 Msa0173800:intron 20.0%
!! CTTATATAAACTATAGACAA+AGG + chr1_4:59149320-59149339 None:intergenic 20.0%
!! TGTCTATAGTTTATATAAGT+AGG - chr1_4:59149321-59149340 Msa0173800:intron 20.0%
!! GTCTATAGTTTATATAAGTA+GGG - chr1_4:59149322-59149341 Msa0173800:intron 20.0%
!!! TTCTTTCTAAAGAAGAAATT+AGG - chr1_4:59149615-59149634 Msa0173800:intron 20.0%
!!! AAATCTTTAAAAAGTAGTTG+AGG - chr1_4:59149710-59149729 Msa0173800:intron 20.0%
!!! AAAAAAAAGCTAAACTTGTT+TGG + chr1_4:59149839-59149858 None:intergenic 20.0%
!! TGTTTACATTGTGAATTAAA+TGG - chr1_4:59150191-59150210 Msa0173800:CDS 20.0%
!! AAAAACAATACAAGTTTAGT+GGG + chr1_4:59150227-59150246 None:intergenic 20.0%
!! AAAAAACAATACAAGTTTAG+TGG + chr1_4:59150228-59150247 None:intergenic 20.0%
!!! TTTTAACCCTAATTTTTTTG+TGG - chr1_4:59150277-59150296 Msa0173800:CDS 20.0%
!!! GTGTTTCAAGTTAAATATAT+CGG - chr1_4:59150332-59150351 Msa0173800:CDS 20.0%
!!! TTTTCATAATTTTCTGTACT+TGG - chr1_4:59150671-59150690 Msa0173800:CDS 20.0%
!!! TTGATGATATAACTCAATTT+TGG + chr1_4:59151010-59151029 None:intergenic 20.0%
!!! TATTAGAATTCCATTTTTAC+TGG - chr1_4:59151257-59151276 Msa0173800:CDS 20.0%
!!! CTTTATCTTTTATCCTATTA+AGG + chr1_4:59151620-59151639 None:intergenic 20.0%
!! CTTAATAGGATAAAAGATAA+AGG - chr1_4:59151618-59151637 Msa0173800:CDS 20.0%
!! AAATCAGAAAGAAAAAAAGA+AGG + chr1_4:59151752-59151771 None:intergenic 20.0%
!!! TTAGTATTGATATTATGTCA+TGG + chr1_4:59152074-59152093 None:intergenic 20.0%
!!! GATTTCTAAAATCAATTTAC+TGG + chr1_4:59152446-59152465 None:intergenic 20.0%
!!! TTAAGAGCTTTCTTATTTAT+GGG + chr1_4:59152539-59152558 None:intergenic 20.0%
!!! TTGTTTAATTTGATTGGTGA+TGG + chr1_4:59145937-59145956 None:intergenic 25.0%
! CTACTGTTGAAAAATTCATA+TGG - chr1_4:59146107-59146126 Msa0173800:intron 25.0%
!! GTTTGTATTTGTATTTGTTG+AGG - chr1_4:59146242-59146261 Msa0173800:intron 25.0%
! GCAATAATAAAAATGGGTAA+CGG - chr1_4:59146288-59146307 Msa0173800:intron 25.0%
! TTGTTTATTGGGATATATGA+CGG - chr1_4:59147233-59147252 Msa0173800:intron 25.0%
! TGTCTAGAAATCTATAAAGA+TGG + chr1_4:59147295-59147314 None:intergenic 25.0%
!! TAGATTTCTAGACAAAGAAT+TGG - chr1_4:59147301-59147320 Msa0173800:intron 25.0%
! ATTTAACAATGAGATAGTTG+AGG - chr1_4:59147505-59147524 Msa0173800:intron 25.0%
! GAAAAGGTAAAAGAAGTTTA+AGG - chr1_4:59147627-59147646 Msa0173800:intron 25.0%
!! TCTTGATAACATGATTGTTA+TGG + chr1_4:59148378-59148397 None:intergenic 25.0%
! ATAGAATATTTGACCATAAC+TGG + chr1_4:59148555-59148574 None:intergenic 25.0%
!!! GTCTGATAAAATTTTAGAAC+AGG + chr1_4:59148640-59148659 None:intergenic 25.0%
!! CAGACTTGAATTTTTGTATT+TGG - chr1_4:59148655-59148674 Msa0173800:intron 25.0%
! CATAAAATAGCAGAAATCTT+TGG + chr1_4:59148970-59148989 None:intergenic 25.0%
!!! CAAAGATTTCTGCTATTTTA+TGG - chr1_4:59148968-59148987 Msa0173800:intron 25.0%
!!! CAAACATAATTTTGCTATTG+AGG - chr1_4:59149554-59149573 Msa0173800:intron 25.0%
!!! TAATTTTGCTATTGAGGTTT+AGG - chr1_4:59149560-59149579 Msa0173800:intron 25.0%
!! TTTTAATGCCAAAATAAGTC+AGG - chr1_4:59149900-59149919 Msa0173800:CDS 25.0%
! ATCACTATTAGTAGTTGTAT+AGG - chr1_4:59150092-59150111 Msa0173800:CDS 25.0%
! TCATGATTGTATATGATTCT+TGG - chr1_4:59150125-59150144 Msa0173800:CDS 25.0%
! CATGATTGTATATGATTCTT+GGG - chr1_4:59150126-59150145 Msa0173800:CDS 25.0%
!!! TTGTTTTTTGTTGCCTAATT+TGG - chr1_4:59150239-59150258 Msa0173800:CDS 25.0%
! GCTATACCACAAAAAAATTA+GGG + chr1_4:59150286-59150305 None:intergenic 25.0%
! CTGTTACAATAATATCTGAT+GGG + chr1_4:59150596-59150615 None:intergenic 25.0%
! ACTGTTACAATAATATCTGA+TGG + chr1_4:59150597-59150616 None:intergenic 25.0%
! TCTGCTATAATTGAATTTAG+AGG - chr1_4:59150744-59150763 Msa0173800:CDS 25.0%
! CTGCTATAATTGAATTTAGA+GGG - chr1_4:59150745-59150764 Msa0173800:CDS 25.0%
!!! CTTTTAGTTAAACTGAAGTT+TGG - chr1_4:59150872-59150891 Msa0173800:CDS 25.0%
!! TAAATCTTTGGTTTCGATTT+CGG - chr1_4:59150898-59150917 Msa0173800:CDS 25.0%
!!! TAACTCAATTTTGGAAACAA+AGG + chr1_4:59151001-59151020 None:intergenic 25.0%
! GGAATTCTAATAAAGATGTT+CGG + chr1_4:59151249-59151268 None:intergenic 25.0%
!! GCTTTTAATATTCATGGAAA+GGG + chr1_4:59151331-59151350 None:intergenic 25.0%
!! AGCTTTTAATATTCATGGAA+AGG + chr1_4:59151332-59151351 None:intergenic 25.0%
!!! ACATATAGTTTGTTTTCAAC+CGG - chr1_4:59151446-59151465 Msa0173800:CDS 25.0%
! AAATCAGTTGCCAATTATTT+GGG + chr1_4:59151727-59151746 None:intergenic 25.0%
! AAAATCAGTTGCCAATTATT+TGG + chr1_4:59151728-59151747 None:intergenic 25.0%
! ATAAATCATCAGCAATAGAT+AGG + chr1_4:59151894-59151913 None:intergenic 25.0%
! CTATTTGTAACAACAAACAT+AGG - chr1_4:59151994-59152013 Msa0173800:five_prime_UTR 25.0%
! AGAAACACAAGAATCATAAA+TGG + chr1_4:59152023-59152042 None:intergenic 25.0%
! TCAAGACAATATGCAAATAT+GGG + chr1_4:59152405-59152424 None:intergenic 25.0%
! ATCAAGACAATATGCAAATA+TGG + chr1_4:59152406-59152425 None:intergenic 25.0%
! TCTTGATATTGAAACAATCT+TGG - chr1_4:59152419-59152438 Msa0173800:five_prime_UTR 25.0%
! CTTGATATTGAAACAATCTT+GGG - chr1_4:59152420-59152439 Msa0173800:five_prime_UTR 25.0%
! AATTCAAAACAAATTAGGAC+TGG + chr1_4:59152513-59152532 None:intergenic 25.0%
! GGGTAAATTCAAAACAAATT+AGG + chr1_4:59152518-59152537 None:intergenic 25.0%
!! TAAGAGCTTTCTTATTTATG+GGG + chr1_4:59152538-59152557 None:intergenic 25.0%
!! GTTAAGAGCTTTCTTATTTA+TGG + chr1_4:59152540-59152559 None:intergenic 25.0%
CTCTTTCTTTCTTCTTTCTT+GGG + chr1_4:59145649-59145668 None:intergenic 30.0%
TCTCTTTCTTTCTTCTTTCT+TGG + chr1_4:59145650-59145669 None:intergenic 30.0%
! ATAAACACAAGTAGGTTGAA+GGG + chr1_4:59145867-59145886 None:intergenic 30.0%
ATTGAGACATAAACACAAGT+AGG + chr1_4:59145875-59145894 None:intergenic 30.0%
GTTTATGTCTCAATGATTCA+AGG - chr1_4:59145881-59145900 Msa0173800:exon 30.0%
!! TTTAATTTGATTGGTGATGG+TGG + chr1_4:59145934-59145953 None:intergenic 30.0%
AAACACAAAAACCCATTTCA+AGG + chr1_4:59145963-59145982 None:intergenic 30.0%
AAAACACTCTTTACCTCAAA+GGG + chr1_4:59146068-59146087 None:intergenic 30.0%
AAAAACACTCTTTACCTCAA+AGG + chr1_4:59146069-59146088 None:intergenic 30.0%
!!! GGTTGTTTTGTGTTTTTTTG+AGG - chr1_4:59146129-59146148 Msa0173800:intron 30.0%
!!! TTGTGTTTTTTTGAGGTTGT+TGG - chr1_4:59146136-59146155 Msa0173800:intron 30.0%
!!! TGTGTTTTTTTGAGGTTGTT+GGG - chr1_4:59146137-59146156 Msa0173800:intron 30.0%
ATGGTCAAGTGAGTAATAAT+GGG - chr1_4:59146176-59146195 Msa0173800:intron 30.0%
!!! TTGATGGGTTTTTAGCTAAT+TGG - chr1_4:59146212-59146231 Msa0173800:intron 30.0%
!!! TGATGGGTTTTTAGCTAATT+GGG - chr1_4:59146213-59146232 Msa0173800:intron 30.0%
!! ACACCATTTTTACCATTGAA+TGG + chr1_4:59146342-59146361 None:intergenic 30.0%
!! TGGTAAAAATGGTGTTGATT+TGG - chr1_4:59146347-59146366 Msa0173800:intron 30.0%
!!! TTTTTAGAGCCATTAGATGA+AGG - chr1_4:59146372-59146391 Msa0173800:intron 30.0%
! CACTGATAAATCCAACTTTT+CGG - chr1_4:59146887-59146906 Msa0173800:intron 30.0%
TGTTTATACTCAGCTTCATA+CGG + chr1_4:59147134-59147153 None:intergenic 30.0%
! TAGTTCTTTCTGAAGAACAA+GGG - chr1_4:59147207-59147226 Msa0173800:intron 30.0%
TTTCTAGACAAAGAATTGGA+AGG - chr1_4:59147305-59147324 Msa0173800:intron 30.0%
AAGAATTGGAAGGTTTACTT+TGG - chr1_4:59147315-59147334 Msa0173800:intron 30.0%
AGAATTGGAAGGTTTACTTT+GGG - chr1_4:59147316-59147335 Msa0173800:intron 30.0%
!!! TTTTAAAGTTTCAGGGACTT+CGG + chr1_4:59147375-59147394 None:intergenic 30.0%
GATTGATCCTTGATTAATTC+AGG + chr1_4:59147485-59147504 None:intergenic 30.0%
TACTTCCACAATTAGATAAC+TGG + chr1_4:59147562-59147581 None:intergenic 30.0%
!! AAATCCAGAACTTGCTATAA+TGG - chr1_4:59148141-59148160 Msa0173800:intron 30.0%
!! AATCCAGAACTTGCTATAAT+GGG - chr1_4:59148142-59148161 Msa0173800:intron 30.0%
AGATGTTTATGTCATGAATC+TGG - chr1_4:59148198-59148217 Msa0173800:intron 30.0%
GATGTTTATGTCATGAATCT+GGG - chr1_4:59148199-59148218 Msa0173800:intron 30.0%
TGATTGTTATGGTTGTGAAT+TGG + chr1_4:59148367-59148386 None:intergenic 30.0%
ATTTGCAAAATGATATCTCG+CGG + chr1_4:59148411-59148430 None:intergenic 30.0%
ATTTGATTCACCAATACACA+GGG + chr1_4:59148503-59148522 None:intergenic 30.0%
TATTTGATTCACCAATACAC+AGG + chr1_4:59148504-59148523 None:intergenic 30.0%
TTGAAGATCTAAACCAGTTA+TGG - chr1_4:59148539-59148558 Msa0173800:intron 30.0%
GATCAGAAAAGTTCAATGAT+CGG + chr1_4:59148762-59148781 None:intergenic 30.0%
CACTTAGTAATTCAGTGTAT+AGG + chr1_4:59148798-59148817 None:intergenic 30.0%
AAAAAACATTTGACACTCGA+CGG + chr1_4:59149027-59149046 None:intergenic 30.0%
TTTCACTCGATCATTCAATA+TGG + chr1_4:59149198-59149217 None:intergenic 30.0%
ATATTGAATGATCGAGTGAA+AGG - chr1_4:59149197-59149216 Msa0173800:intron 30.0%
! TTAAAAGTTACCAGAGCATT+TGG - chr1_4:59149224-59149243 Msa0173800:intron 30.0%
CATCAAACTGAATTTCAGAT+GGG + chr1_4:59149292-59149311 None:intergenic 30.0%
! CCTAAGTTTTCTGTATGTTA+TGG + chr1_4:59149371-59149390 None:intergenic 30.0%
CCATAACATACAGAAAACTT+AGG - chr1_4:59149368-59149387 Msa0173800:intron 30.0%
ACAGAAAACTTAGGAAGAAA+AGG - chr1_4:59149377-59149396 Msa0173800:intron 30.0%
! CGTTAAATTTTTCGCCAAAA+TGG - chr1_4:59149423-59149442 Msa0173800:intron 30.0%
! AAATTTTTCGCCAAAATGGT+AGG - chr1_4:59149427-59149446 Msa0173800:intron 30.0%
TAGCTAAACTATATCTCTTG+TGG - chr1_4:59149497-59149516 Msa0173800:intron 30.0%
AGCTAAACTATATCTCTTGT+GGG - chr1_4:59149498-59149517 Msa0173800:intron 30.0%
! TAACGGATGAAATAGTCAAT+GGG - chr1_4:59149528-59149547 Msa0173800:intron 30.0%
CAAAAAAAAGTCAGACCAAA+TGG + chr1_4:59149588-59149607 None:intergenic 30.0%
! TTCTTCTTTAGAAAGAAGAG+AGG + chr1_4:59149612-59149631 None:intergenic 30.0%
! CTTGTTTGGTAGTTGTTAAA+AGG + chr1_4:59149825-59149844 None:intergenic 30.0%
CCAAAATAAGTCAGGTTAAA+CGG - chr1_4:59149908-59149927 Msa0173800:CDS 30.0%
CAAAATAAGTCAGGTTAAAC+GGG - chr1_4:59149909-59149928 Msa0173800:CDS 30.0%
CTTCCCTTTAAACTAGAATA+GGG + chr1_4:59149936-59149955 None:intergenic 30.0%
CTTTATACAAACAAGCTTCT+AGG - chr1_4:59150015-59150034 Msa0173800:CDS 30.0%
AGTAGTTGTATAGGTTCATA+TGG - chr1_4:59150101-59150120 Msa0173800:CDS 30.0%
! TGTATATGATTCTTGGGTTT+TGG - chr1_4:59150132-59150151 Msa0173800:CDS 30.0%
GGCTATACCACAAAAAAATT+AGG + chr1_4:59150287-59150306 None:intergenic 30.0%
CTTCTTCATTGCTGAAATAT+TGG + chr1_4:59150451-59150470 None:intergenic 30.0%
ATATTTCAGCAATGAAGAAG+TGG - chr1_4:59150451-59150470 Msa0173800:CDS 30.0%
CAATAATATCTGATGGGAAT+AGG + chr1_4:59150590-59150609 None:intergenic 30.0%
! GAAGTTTGGAACTAAATCTT+TGG - chr1_4:59150886-59150905 Msa0173800:CDS 30.0%
! AAATCTTTGGTTTCGATTTC+GGG - chr1_4:59150899-59150918 Msa0173800:CDS 30.0%
! ATGGCAGCTTTTAATATTCA+TGG + chr1_4:59151337-59151356 None:intergenic 30.0%
AATATTAAAAGCTGCCATGT+AGG - chr1_4:59151339-59151358 Msa0173800:CDS 30.0%
ATATTAAAAGCTGCCATGTA+GGG - chr1_4:59151340-59151359 Msa0173800:CDS 30.0%
AACAATAAGTCTCTTGTAGA+GGG + chr1_4:59151392-59151411 None:intergenic 30.0%
AAACAATAAGTCTCTTGTAG+AGG + chr1_4:59151393-59151412 None:intergenic 30.0%
TTCTGAATTTGTCATGACAT+AGG - chr1_4:59151416-59151435 Msa0173800:CDS 30.0%
TCTGAATTTGTCATGACATA+GGG - chr1_4:59151417-59151436 Msa0173800:CDS 30.0%
!!! CATATAGTTTGTTTTCAACC+GGG - chr1_4:59151447-59151466 Msa0173800:CDS 30.0%
TAATTTATTACTTTGCCCTC+TGG - chr1_4:59151516-59151535 Msa0173800:CDS 30.0%
AATCAGTTGCCAATTATTTG+GGG + chr1_4:59151726-59151745 None:intergenic 30.0%
! TTTCCTTCTGTTTTCAAAAC+CGG - chr1_4:59151771-59151790 Msa0173800:CDS 30.0%
AGGACTGCTCTTATATTATT+AGG + chr1_4:59151874-59151893 None:intergenic 30.0%
GACAATGTTTATTGTTACGA+AGG + chr1_4:59152052-59152071 None:intergenic 30.0%
!! TTAACAGAGAAGCACTTAAA+AGG + chr1_4:59152366-59152385 None:intergenic 30.0%
! AGTGCTTCTCTGTTAATTTT+TGG - chr1_4:59152370-59152389 Msa0173800:five_prime_UTR 30.0%
!!! TTCTCTGTTAATTTTTGGCT+AGG - chr1_4:59152375-59152394 Msa0173800:five_prime_UTR 30.0%
AAGACAATATGCAAATATGG+GGG + chr1_4:59152403-59152422 None:intergenic 30.0%
CAAGACAATATGCAAATATG+GGG + chr1_4:59152404-59152423 None:intergenic 30.0%
GAACAAAGATTGAGACAAAG+AGG + chr1_4:59145812-59145831 None:intergenic 35.0%
! TAAACACAAGTAGGTTGAAG+GGG + chr1_4:59145866-59145885 None:intergenic 35.0%
! CATAAACACAAGTAGGTTGA+AGG + chr1_4:59145868-59145887 None:intergenic 35.0%
CATGGTCAAGTGAGTAATAA+TGG - chr1_4:59146175-59146194 Msa0173800:intron 35.0%
TGGTCAAGTGAGTAATAATG+GGG - chr1_4:59146177-59146196 Msa0173800:intron 35.0%
! AGTAATAATGGGGTGGTTAT+GGG - chr1_4:59146187-59146206 Msa0173800:intron 35.0%
!! TGTATTTGTTGAGGGTTTTG+AGG - chr1_4:59146251-59146270 Msa0173800:intron 35.0%
! GTGCCATTCAATGGTAAAAA+TGG - chr1_4:59146336-59146355 Msa0173800:intron 35.0%
TGTCCTAAACCTTCATCTAA+TGG + chr1_4:59146384-59146403 None:intergenic 35.0%
!! ATCAAGAGTGCTTGAATCAA+CGG + chr1_4:59146478-59146497 None:intergenic 35.0%
TTCGTTTAGGCATGATAGTA+TGG - chr1_4:59146515-59146534 Msa0173800:intron 35.0%
! ATGGAGCATTCTAATTCTTC+TGG - chr1_4:59146534-59146553 Msa0173800:intron 35.0%
TCGTCTTAAACGTAGTTTCA+GGG + chr1_4:59146584-59146603 None:intergenic 35.0%
ATCGTCTTAAACGTAGTTTC+AGG + chr1_4:59146585-59146604 None:intergenic 35.0%
! ACTACGTTTAAGACGATTTC+AGG - chr1_4:59146588-59146607 Msa0173800:intron 35.0%
! CTACGTTTAAGACGATTTCA+GGG - chr1_4:59146589-59146608 Msa0173800:intron 35.0%
! TACGTTTAAGACGATTTCAG+GGG - chr1_4:59146590-59146609 Msa0173800:intron 35.0%
CCAGACATAAAACCATTCAA+AGG + chr1_4:59146768-59146787 None:intergenic 35.0%
!!! CCTTTGAATGGTTTTATGTC+TGG - chr1_4:59146765-59146784 Msa0173800:intron 35.0%
GATTTATCAGTGTCATCAAG+AGG + chr1_4:59146879-59146898 None:intergenic 35.0%
! GTAGTTCTTTCTGAAGAACA+AGG - chr1_4:59147206-59147225 Msa0173800:intron 35.0%
AACAAGGGTGGTTGTTTATT+GGG - chr1_4:59147222-59147241 Msa0173800:intron 35.0%
ATCAAAAAATCAGGTGCATC+TGG + chr1_4:59147269-59147288 None:intergenic 35.0%
AGATGGCTCATCAAAAAATC+AGG + chr1_4:59147278-59147297 None:intergenic 35.0%
! TTTAAAGTTTCAGGGACTTC+GGG + chr1_4:59147374-59147393 None:intergenic 35.0%
!!! CGGTAGCTTTTAAAGTTTCA+GGG + chr1_4:59147382-59147401 None:intergenic 35.0%
!!! ACGGTAGCTTTTAAAGTTTC+AGG + chr1_4:59147383-59147402 None:intergenic 35.0%
!!! GAATGTTTTGAAGCTTGTTC+TGG - chr1_4:59147458-59147477 Msa0173800:intron 35.0%
TTCTGGTCCTGAATTAATCA+AGG - chr1_4:59147475-59147494 Msa0173800:intron 35.0%
CAATGAGATAGTTGAGGAAA+AGG - chr1_4:59147511-59147530 Msa0173800:intron 35.0%
GAACACCAGTTATCTAATTG+TGG - chr1_4:59147554-59147573 Msa0173800:intron 35.0%
GTTCAACATGAAAAGTTGAC+TGG - chr1_4:59147605-59147624 Msa0173800:intron 35.0%
CATGAAAAGTTGACTGGAAA+AGG - chr1_4:59147611-59147630 Msa0173800:intron 35.0%
GCTTTATGAGCTACTTCAAA+TGG - chr1_4:59147649-59147668 Msa0173800:intron 35.0%
AGCTACTTCAAATGGAATCT+TGG - chr1_4:59147657-59147676 Msa0173800:intron 35.0%
GCTACTTCAAATGGAATCTT+GGG - chr1_4:59147658-59147677 Msa0173800:intron 35.0%
!! TCATCTAGTATTGACTCCAT+CGG + chr1_4:59147710-59147729 None:intergenic 35.0%
! TTTTTCCTGCTTCTGTATCA+AGG - chr1_4:59147855-59147874 Msa0173800:CDS 35.0%
AGTTTCTTACACAAGGACTT+TGG + chr1_4:59147935-59147954 None:intergenic 35.0%
AGGAAAGAGTTTCTTACACA+AGG + chr1_4:59147942-59147961 None:intergenic 35.0%
TGTGTAAGAAACTCTTTCCT+TGG - chr1_4:59147942-59147961 Msa0173800:intron 35.0%
TCTTTCCTTGGAGTTATGAT+TGG - chr1_4:59147954-59147973 Msa0173800:intron 35.0%
TTGGAGTTATGATTGGCATA+GGG - chr1_4:59147961-59147980 Msa0173800:intron 35.0%
GAGAAAATATTAGAAGCCTC+TGG - chr1_4:59148001-59148020 Msa0173800:intron 35.0%
!! TAACGCAGTTTTAACAGCAA+TGG - chr1_4:59148057-59148076 Msa0173800:intron 35.0%
!! ATCCAGAACTTGCTATAATG+GGG - chr1_4:59148143-59148162 Msa0173800:intron 35.0%
! TGTTCTAGTGATGTTGATGA+AGG - chr1_4:59148171-59148190 Msa0173800:intron 35.0%
!! TTGTATTTGGTTCTGCTTCT+TGG - chr1_4:59148668-59148687 Msa0173800:intron 35.0%
!! TTGGTGATTTTGCATTCATC+AGG - chr1_4:59148895-59148914 Msa0173800:intron 35.0%
AAAAACATTTGACACTCGAC+GGG + chr1_4:59149026-59149045 None:intergenic 35.0%
TTTCAATTTCTGTTTCCTGC+AGG - chr1_4:59149130-59149149 Msa0173800:intron 35.0%
TTATTCTTGAAACTTCCTGC+AGG + chr1_4:59149148-59149167 None:intergenic 35.0%
GCATCAAACTGAATTTCAGA+TGG + chr1_4:59149293-59149312 None:intergenic 35.0%
! CCAGTGATTTGTATGATTCA+AGG + chr1_4:59149460-59149479 None:intergenic 35.0%
CCTTGAATCATACAAATCAC+TGG - chr1_4:59149457-59149476 Msa0173800:intron 35.0%
!! GTAACGGATGAAATAGTCAA+TGG - chr1_4:59149527-59149546 Msa0173800:intron 35.0%
AACGGATGAAATAGTCAATG+GGG - chr1_4:59149529-59149548 Msa0173800:intron 35.0%
AAAAGTAGTTGAGGTTTGAG+AGG - chr1_4:59149719-59149738 Msa0173800:intron 35.0%
! AGGAGCTTTTCAAAACAAGT+AGG - chr1_4:59149739-59149758 Msa0173800:intron 35.0%
! CCGTTTAACCTGACTTATTT+TGG + chr1_4:59149911-59149930 None:intergenic 35.0%
!! GGACCCTATTCTAGTTTAAA+GGG - chr1_4:59149930-59149949 Msa0173800:CDS 35.0%
CCTTCCCTTTAAACTAGAAT+AGG + chr1_4:59149937-59149956 None:intergenic 35.0%
!! CCTATTCTAGTTTAAAGGGA+AGG - chr1_4:59149934-59149953 Msa0173800:CDS 35.0%
TCGATTATAGCGTAGATCAT+TGG - chr1_4:59149961-59149980 Msa0173800:CDS 35.0%
!!! TGATTCTTGGGTTTTGGAAT+AGG - chr1_4:59150138-59150157 Msa0173800:CDS 35.0%
AGTAGAGCTTCGTTAAAAGA+CGG + chr1_4:59150308-59150327 None:intergenic 35.0%
TTCATGGAAAATGTTCCAGA+AGG - chr1_4:59150491-59150510 Msa0173800:CDS 35.0%
AATATCTGATGGGAATAGGA+AGG + chr1_4:59150586-59150605 None:intergenic 35.0%
!!! GTGTATGTTTAGTTTTGCAG+TGG + chr1_4:59151150-59151169 None:intergenic 35.0%
GTAGTAGAAACTGGTATCTA+TGG - chr1_4:59151477-59151496 Msa0173800:CDS 35.0%
GATGATGATTCTCAAAACAG+AGG - chr1_4:59151541-59151560 Msa0173800:CDS 35.0%
CTATTAAGGAACTACCATTG+TGG + chr1_4:59151606-59151625 None:intergenic 35.0%
CACAATGGTAGTTCCTTAAT+AGG - chr1_4:59151604-59151623 Msa0173800:CDS 35.0%
ATATCCACTCCCCAAATAAT+TGG - chr1_4:59151714-59151733 Msa0173800:CDS 35.0%
CAACCAGCAGTTATGTTATT+AGG + chr1_4:59151797-59151816 None:intergenic 35.0%
! ATAACATAACTGCTGGTTGT+TGG - chr1_4:59151798-59151817 Msa0173800:CDS 35.0%
! GGTTGTTGGCTAATAACATA+AGG - chr1_4:59151812-59151831 Msa0173800:CDS 35.0%
AGAGAAGAATGCATACAGTT+AGG - chr1_4:59151921-59151940 Msa0173800:exon 35.0%
! AGATTTGACCAATCAAGTTG+TGG - chr1_4:59151944-59151963 Msa0173800:five_prime_UTR 35.0%
CAAATAGTAACTACCTACTC+CGG + chr1_4:59151981-59152000 None:intergenic 35.0%
GAAAATCCATTCCTGCATAT+TGG + chr1_4:59152215-59152234 None:intergenic 35.0%
TTGATATTCCTCATGGAGAT+CGG - chr1_4:59152244-59152263 Msa0173800:five_prime_UTR 35.0%
TCAAAACAAATTAGGACTGG+TGG + chr1_4:59152510-59152529 None:intergenic 35.0%
TGAGATCCTATCAAAGGACA+CGG + chr1_4:59145678-59145697 None:intergenic 40.0%
!! GGGAATTTGATGATGATGCA+TGG - chr1_4:59146157-59146176 Msa0173800:intron 40.0%
! TCAAGTGAGTAATAATGGGG+TGG - chr1_4:59146180-59146199 Msa0173800:intron 40.0%
! GAGTAATAATGGGGTGGTTA+TGG - chr1_4:59146186-59146205 Msa0173800:intron 40.0%
! GTAATAATGGGGTGGTTATG+GGG - chr1_4:59146188-59146207 Msa0173800:intron 40.0%
!!! TGTTGAGGGTTTTGAGGTTT+AGG - chr1_4:59146257-59146276 Msa0173800:intron 40.0%
! GGTTGTTTAGTGCCATTCAA+TGG - chr1_4:59146327-59146346 Msa0173800:intron 40.0%
GAGCCATTAGATGAAGGTTT+AGG - chr1_4:59146378-59146397 Msa0173800:intron 40.0%
GCAGGAGATTCAAACATAGT+TGG + chr1_4:59146426-59146445 None:intergenic 40.0%
!! GAATTCGATGGACTAATAGC+AGG + chr1_4:59146444-59146463 None:intergenic 40.0%
TTAGTCCATCGAATTCTGAG+AGG - chr1_4:59146448-59146467 Msa0173800:intron 40.0%
GTAAACCTCTCAGAATTCGA+TGG + chr1_4:59146456-59146475 None:intergenic 40.0%
!! CTTGATTCTGAAACCTTGAG+TGG - chr1_4:59146492-59146511 Msa0173800:intron 40.0%
AAACCTTGAGTGGTTCGTTT+AGG - chr1_4:59146502-59146521 Msa0173800:intron 40.0%
!! TTCTTCTGGTTTACACAAGC+AGG - chr1_4:59146548-59146567 Msa0173800:intron 40.0%
!! TCTTCTGGTTTACACAAGCA+GGG - chr1_4:59146549-59146568 Msa0173800:intron 40.0%
CAAGAAATCACCAGCAAACA+TGG + chr1_4:59146670-59146689 None:intergenic 40.0%
! CATGTTTGCTGGTGATTTCT+TGG - chr1_4:59146668-59146687 Msa0173800:intron 40.0%
!!! TGGTTTTATGTCTGGTCCTT+TGG - chr1_4:59146773-59146792 Msa0173800:intron 40.0%
AAACCACCACTTCTATCCAA+TGG + chr1_4:59146819-59146838 None:intergenic 40.0%
!! CATCTCATGAGAAGTGTTAG+TGG - chr1_4:59146948-59146967 Msa0173800:intron 40.0%
AACATTCTCTAAGCACTCCA+TGG - chr1_4:59146995-59147014 Msa0173800:intron 40.0%
ACATTCTCTAAGCACTCCAT+GGG - chr1_4:59146996-59147015 Msa0173800:intron 40.0%
GCAAAGGTTGTTCTTTCAAC+CGG - chr1_4:59147031-59147050 Msa0173800:intron 40.0%
CTACACTTAGTATCTCTGGA+AGG + chr1_4:59147074-59147093 None:intergenic 40.0%
CTTCCAGAGATACTAAGTGT+AGG - chr1_4:59147072-59147091 Msa0173800:intron 40.0%
TACATGAACCCTATCTTCAC+CGG + chr1_4:59147189-59147208 None:intergenic 40.0%
! TTCTTTCTGAAGAACAAGGG+TGG - chr1_4:59147210-59147229 Msa0173800:intron 40.0%
GAACAAGGGTGGTTGTTTAT+TGG - chr1_4:59147221-59147240 Msa0173800:intron 40.0%
!! GGGATATATGACGGTTTTAG+TGG - chr1_4:59147242-59147261 Msa0173800:intron 40.0%
TAATGATTCCTCAGTTCCGA+TGG - chr1_4:59147691-59147710 Msa0173800:CDS 40.0%
TCGTCTACTGTAAGAGAAGA+TGG - chr1_4:59147746-59147765 Msa0173800:CDS 40.0%
!! AGAAGATGGCTCTAAACATC+AGG - chr1_4:59147760-59147779 Msa0173800:CDS 40.0%
CTATGCCAATCATAACTCCA+AGG + chr1_4:59147962-59147981 None:intergenic 40.0%
CTTGGAGTTATGATTGGCAT+AGG - chr1_4:59147960-59147979 Msa0173800:intron 40.0%
! GCATTTTCTAATAGGTCCAG+AGG + chr1_4:59148020-59148039 None:intergenic 40.0%
CTGGACCTATTAGAAAATGC+AGG - chr1_4:59148020-59148039 Msa0173800:intron 40.0%
! CCAGACCTGCATTTTCTAAT+AGG + chr1_4:59148028-59148047 None:intergenic 40.0%
CCTATTAGAAAATGCAGGTC+TGG - chr1_4:59148025-59148044 Msa0173800:intron 40.0%
AGCTCTTGAAAGAACAGAAG+AGG - chr1_4:59148084-59148103 Msa0173800:intron 40.0%
! AAGAACAGAAGAGGCATACA+TGG - chr1_4:59148093-59148112 Msa0173800:intron 40.0%
! AGAAGAGGCATACATGGAAA+CGG - chr1_4:59148099-59148118 Msa0173800:intron 40.0%
TGACAGAGCTTGAATTAGGA+TGG + chr1_4:59148267-59148286 None:intergenic 40.0%
TCCTAATTCAAGCTCTGTCA+AGG - chr1_4:59148267-59148286 Msa0173800:intron 40.0%
TCCTTGACAGAGCTTGAATT+AGG + chr1_4:59148271-59148290 None:intergenic 40.0%
TAGAGAGTCATTAGTACGCA+TGG - chr1_4:59148315-59148334 Msa0173800:intron 40.0%
GGAACATACCTCTTCAATAC+TGG + chr1_4:59148473-59148492 None:intergenic 40.0%
TGCACAACAGAATGATCTGT+TGG - chr1_4:59148876-59148895 Msa0173800:intron 40.0%
ATATGGCCTGACTATCATCA+GGG + chr1_4:59149181-59149200 None:intergenic 40.0%
AATATGGCCTGACTATCATC+AGG + chr1_4:59149182-59149201 None:intergenic 40.0%
ATCATACAAATCACTGGTCC+TGG - chr1_4:59149463-59149482 Msa0173800:intron 40.0%
TCATACAAATCACTGGTCCT+GGG - chr1_4:59149464-59149483 Msa0173800:intron 40.0%
ATTGAGGTTTAGGCTCCATT+TGG - chr1_4:59149570-59149589 Msa0173800:intron 40.0%
!! GGGACCCTATTCTAGTTTAA+AGG - chr1_4:59149929-59149948 Msa0173800:CDS 40.0%
AGCGTAGATCATTGGATTTG+CGG - chr1_4:59149969-59149988 Msa0173800:CDS 40.0%
TGCCTAATTTGGAAACACTG+AGG - chr1_4:59150250-59150269 Msa0173800:CDS 40.0%
! TTTTAACGAAGCTCTACTCG+AGG - chr1_4:59150310-59150329 Msa0173800:CDS 40.0%
! TTCTTCAAGTGACCGATTCT+TGG - chr1_4:59150403-59150422 Msa0173800:CDS 40.0%
ATATTGGTAAAGCCCATCAG+AGG + chr1_4:59150435-59150454 None:intergenic 40.0%
TTCCATGAACCATGTGACAT+GGG + chr1_4:59150480-59150499 None:intergenic 40.0%
TTTCCATGAACCATGTGACA+TGG + chr1_4:59150481-59150500 None:intergenic 40.0%
!! TCTGCAATAAGGTATTGTGC+AGG + chr1_4:59150521-59150540 None:intergenic 40.0%
AGAAGAGAAGCTCTGCAATA+AGG + chr1_4:59150532-59150551 None:intergenic 40.0%
TTCTGCGCTGCTAAAAAGAA+TGG - chr1_4:59150548-59150567 Msa0173800:CDS 40.0%
! AACCGATTCTAACCTGAAGT+TGG - chr1_4:59150966-59150985 Msa0173800:CDS 40.0%
! ACCGATTCTAACCTGAAGTT+GGG - chr1_4:59150967-59150986 Msa0173800:CDS 40.0%
! TCCCAACTTCAGGTTAGAAT+CGG + chr1_4:59150971-59150990 None:intergenic 40.0%
AATTACTGGATGACCCTACA+TGG + chr1_4:59151356-59151375 None:intergenic 40.0%
TAAGTCTCTTGTAGAGGGAT+TGG + chr1_4:59151387-59151406 None:intergenic 40.0%
!! GTTTGTTTTCAACCGGGTTA+TGG - chr1_4:59151453-59151472 Msa0173800:CDS 40.0%
GTTTCTACTACACCATAACC+CGG + chr1_4:59151468-59151487 None:intergenic 40.0%
GGTTATGGTGTAGTAGAAAC+TGG - chr1_4:59151468-59151487 Msa0173800:CDS 40.0%
GAGAATCATCATCATCCAGA+GGG + chr1_4:59151534-59151553 None:intergenic 40.0%
TGAGAATCATCATCATCCAG+AGG + chr1_4:59151535-59151554 None:intergenic 40.0%
!! GACTCTTGAACTTCTAGGAT+AGG + chr1_4:59151647-59151666 None:intergenic 40.0%
TCCTAGAAGTTCAAGAGTCT+TGG - chr1_4:59151648-59151667 Msa0173800:CDS 40.0%
ACCAAGACTCTTGAACTTCT+AGG + chr1_4:59151652-59151671 None:intergenic 40.0%
! GAGTGGATATTGATTGAGAG+AGG + chr1_4:59151704-59151723 None:intergenic 40.0%
CAGCAGTTATGTTATTAGGC+CGG + chr1_4:59151793-59151812 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTT+AGG - chr1_4:59151836-59151855 Msa0173800:CDS 40.0%
ATCCATTCCTGCATATTGGA+GGG + chr1_4:59152211-59152230 None:intergenic 40.0%
AATCCATTCCTGCATATTGG+AGG + chr1_4:59152212-59152231 None:intergenic 40.0%
GAACTGCTTGATATTCCTCA+TGG - chr1_4:59152237-59152256 Msa0173800:five_prime_UTR 40.0%
TCACGATGATGTATCTGTCA+TGG - chr1_4:59152275-59152294 Msa0173800:five_prime_UTR 40.0%
ATCTGTCATGGTCGTTTCTT+TGG - chr1_4:59152287-59152306 Msa0173800:five_prime_UTR 40.0%
! TTTCTTTGGAGGGAAGGATT+TGG - chr1_4:59152301-59152320 Msa0173800:five_prime_UTR 40.0%
! GGCAGCAGTAAAGGATTTTA+GGG + chr1_4:59152562-59152581 None:intergenic 40.0%
GAGATCCTATCAAAGGACAC+GGG + chr1_4:59145677-59145696 None:intergenic 45.0%
! CAGCGTTGAGATCCTATCAA+AGG + chr1_4:59145684-59145703 None:intergenic 45.0%
TCCTTTGATCTGACCCTTTG+AGG - chr1_4:59146052-59146071 Msa0173800:intron 45.0%
ACCTCAAAGGGTCAGATCAA+AGG + chr1_4:59146056-59146075 None:intergenic 45.0%
ATGCCTAAACGAACCACTCA+AGG + chr1_4:59146508-59146527 None:intergenic 45.0%
! TGTCCTTGCTGTGGAAACAT+TGG + chr1_4:59146628-59146647 None:intergenic 45.0%
AATGTTTCCACAGCAAGGAC+AGG - chr1_4:59146627-59146646 Msa0173800:intron 45.0%
ACTTCTATCCAATGGACCTG+AGG + chr1_4:59146811-59146830 None:intergenic 45.0%
TCAGGTCCATTGGATAGAAG+TGG - chr1_4:59146810-59146829 Msa0173800:intron 45.0%
AGAAGTGGTGGTTTCATGTC+TGG - chr1_4:59146825-59146844 Msa0173800:intron 45.0%
GAAGTGGTGGTTTCATGTCT+GGG - chr1_4:59146826-59146845 Msa0173800:intron 45.0%
GACATAACCCCCTTCTCTAT+CGG + chr1_4:59146852-59146871 None:intergenic 45.0%
ATAGAGAAGGGGGTTATGTC+AGG - chr1_4:59146852-59146871 Msa0173800:intron 45.0%
CTCATGAGATGTTGTAGACG+CGG + chr1_4:59146939-59146958 None:intergenic 45.0%
!! CATGAGAAGTGTTAGTGGAC+CGG - chr1_4:59146953-59146972 Msa0173800:intron 45.0%
CGAGAAAACGTGTTCTTCAC+CGG + chr1_4:59146975-59146994 None:intergenic 45.0%
CTTTCAACCGGTTACTCAGT+TGG - chr1_4:59147043-59147062 Msa0173800:intron 45.0%
CAGAGATACTAAGTGTAGGC+CGG - chr1_4:59147076-59147095 Msa0173800:intron 45.0%
AACACACGCATAATCTGCAG+TGG - chr1_4:59147150-59147169 Msa0173800:intron 45.0%
ACACACGCATAATCTGCAGT+GGG - chr1_4:59147151-59147170 Msa0173800:intron 45.0%
TCGGGTTTAAGGGAATCTAC+AGG + chr1_4:59147356-59147375 None:intergenic 45.0%
! TTCAGGGACTTCGGGTTTAA+GGG + chr1_4:59147366-59147385 None:intergenic 45.0%
! TTTCAGGGACTTCGGGTTTA+AGG + chr1_4:59147367-59147386 None:intergenic 45.0%
!! TATTGACTCCATCGGAACTG+AGG + chr1_4:59147702-59147721 None:intergenic 45.0%
TCTCTTACAGTAGACGAGCA+AGG + chr1_4:59147743-59147762 None:intergenic 45.0%
!! GGCTCTAAACATCAGGATGA+AGG - chr1_4:59147767-59147786 Msa0173800:CDS 45.0%
! CATTTTCCCCTGATGTAGAC+GGG + chr1_4:59147793-59147812 None:intergenic 45.0%
! CCATTTTCCCCTGATGTAGA+CGG + chr1_4:59147794-59147813 None:intergenic 45.0%
!! GAAAATGGAAGCACTGGGTT+TGG - chr1_4:59147806-59147825 Msa0173800:CDS 45.0%
! TGGGTTTGGTTCAACCAACA+AGG - chr1_4:59147820-59147839 Msa0173800:CDS 45.0%
TTCTGCCTTGATACAGAAGC+AGG + chr1_4:59147863-59147882 None:intergenic 45.0%
GACCCCATTATAGCAAGTTC+TGG + chr1_4:59148148-59148167 None:intergenic 45.0%
! GGGAGATAGTCGTGTGATTT+TGG - chr1_4:59148219-59148238 Msa0173800:intron 45.0%
TGATTCACCAATACACAGGG+AGG + chr1_4:59148500-59148519 None:intergenic 45.0%
AGAACACCCTGATGATAGTC+AGG - chr1_4:59149172-59149191 Msa0173800:intron 45.0%
! AGGTGCACTTCCTACCATTT+TGG + chr1_4:59149440-59149459 None:intergenic 45.0%
TTAGCTATCACACATGACCC+AGG + chr1_4:59149484-59149503 None:intergenic 45.0%
CTCTTGTGGGTGTGTAGTAA+CGG - chr1_4:59149511-59149530 Msa0173800:intron 45.0%
GCGTAGATCATTGGATTTGC+GGG - chr1_4:59149970-59149989 Msa0173800:CDS 45.0%
GGCCTCAGTGTTTCCAAATT+AGG + chr1_4:59150255-59150274 None:intergenic 45.0%
! GAAGGAGTGCAACTTAGGTA+AGG + chr1_4:59150365-59150384 None:intergenic 45.0%
! GTACAGAAGGAGTGCAACTT+AGG + chr1_4:59150370-59150389 None:intergenic 45.0%
AGTCGATGGTGAAGTACAGA+AGG + chr1_4:59150383-59150402 None:intergenic 45.0%
GGTCACTTGAAGAAAGTCGA+TGG + chr1_4:59150397-59150416 None:intergenic 45.0%
!! CAGAGGAGAGTACCAAGAAT+CGG + chr1_4:59150418-59150437 None:intergenic 45.0%
TTCTTGGTACTCTCCTCTGA+TGG - chr1_4:59150419-59150438 Msa0173800:CDS 45.0%
TCTTGGTACTCTCCTCTGAT+GGG - chr1_4:59150420-59150439 Msa0173800:CDS 45.0%
! TCTTTGGTTTCGATTTCGGG+AGG - chr1_4:59150902-59150921 Msa0173800:CDS 45.0%
! CTTTGGTTTCGATTTCGGGA+GGG - chr1_4:59150903-59150922 Msa0173800:CDS 45.0%
! TTTGGTTTCGATTTCGGGAG+GGG - chr1_4:59150904-59150923 Msa0173800:CDS 45.0%
! CTTCAGGTTAGAATCGGTTC+TGG + chr1_4:59150965-59150984 None:intergenic 45.0%
!! AGGCTCTAAATCCCAACTTC+AGG + chr1_4:59150981-59151000 None:intergenic 45.0%
CACGCACACACCAGTAAAAA+TGG + chr1_4:59151270-59151289 None:intergenic 45.0%
GATTGGACGGGATGAATTAC+TGG + chr1_4:59151370-59151389 None:intergenic 45.0%
TCTCTTGTAGAGGGATTGGA+CGG + chr1_4:59151383-59151402 None:intergenic 45.0%
! AGCACTTAGAGCATCCACAA+TGG - chr1_4:59151589-59151608 Msa0173800:CDS 45.0%
TCTTCCCCCCAAGAATTAGA+GGG - chr1_4:59151673-59151692 Msa0173800:CDS 45.0%
GTTGCCAATTATTTGGGGAG+TGG + chr1_4:59151721-59151740 None:intergenic 45.0%
!!! AGGCCGGTTTTGAAAACAGA+AGG + chr1_4:59151777-59151796 None:intergenic 45.0%
CGGCCTAATAACATAACTGC+TGG - chr1_4:59151791-59151810 Msa0173800:CDS 45.0%
AGGCAGCAGTAACTACCTAA+GGG + chr1_4:59151854-59151873 None:intergenic 45.0%
TAGGCAGCAGTAACTACCTA+AGG + chr1_4:59151855-59151874 None:intergenic 45.0%
ATGGTCAGCCACAACTTGAT+TGG + chr1_4:59151955-59151974 None:intergenic 45.0%
TAACTACCTACTCCGGTGTA+TGG + chr1_4:59151974-59151993 None:intergenic 45.0%
TGACTTTCCCTCCAATATGC+AGG - chr1_4:59152201-59152220 Msa0173800:five_prime_UTR 45.0%
TTCCCTCCAATATGCAGGAA+TGG - chr1_4:59152206-59152225 Msa0173800:five_prime_UTR 45.0%
TATTTACGCCGATCTCCATG+AGG + chr1_4:59152255-59152274 None:intergenic 45.0%
TGTCATGGTCGTTTCTTTGG+AGG - chr1_4:59152290-59152309 Msa0173800:five_prime_UTR 45.0%
GTCATGGTCGTTTCTTTGGA+GGG - chr1_4:59152291-59152310 Msa0173800:five_prime_UTR 45.0%
GGGAAGGATTTGGAGATCAT+CGG - chr1_4:59152311-59152330 Msa0173800:five_prime_UTR 45.0%
GGAAGGATTTGGAGATCATC+GGG - chr1_4:59152312-59152331 Msa0173800:five_prime_UTR 45.0%
! GGGCAGCAGTAAAGGATTTT+AGG + chr1_4:59152563-59152582 None:intergenic 45.0%
AAACACAAGGGCAGCAGTAA+AGG + chr1_4:59152571-59152590 None:intergenic 45.0%
TCCTATCAAAGGACACGGGA+CGG + chr1_4:59145673-59145692 None:intergenic 50.0%
! CAAGTAGGTTGAAGGGGACA+GGG + chr1_4:59145860-59145879 None:intergenic 50.0%
! ACAAGTAGGTTGAAGGGGAC+AGG + chr1_4:59145861-59145880 None:intergenic 50.0%
GGGTGGTTATGGGGTTTGAT+GGG - chr1_4:59146197-59146216 Msa0173800:intron 50.0%
AACGGCACTTCTCGTGTTGT+TGG - chr1_4:59146306-59146325 Msa0173800:intron 50.0%
GTGCCAATGTTTCCACAGCA+AGG - chr1_4:59146622-59146641 Msa0173800:intron 50.0%
! AACCAGAGTGCCATGTTTGC+TGG - chr1_4:59146657-59146676 Msa0173800:intron 50.0%
! GAACCTGCTGCTTCGTTTGA+GGG - chr1_4:59146690-59146709 Msa0173800:intron 50.0%
! ATGTCTGGTCCTTTGGAGAG+AGG - chr1_4:59146780-59146799 Msa0173800:intron 50.0%
GGTCCATTGGATAGAAGTGG+TGG - chr1_4:59146813-59146832 Msa0173800:intron 50.0%
ATGTCTGGGCCGATAGAGAA+GGG - chr1_4:59146840-59146859 Msa0173800:intron 50.0%
TTCTCTAAGCACTCCATGGG+TGG - chr1_4:59146999-59147018 Msa0173800:intron 50.0%
TTGCATCCAACTTCCACCCA+TGG + chr1_4:59147015-59147034 None:intergenic 50.0%
TGGGTGGAAGTTGGATGCAA+AGG - chr1_4:59147015-59147034 Msa0173800:intron 50.0%
AACCGGTTACTCAGTTGGCA+TGG - chr1_4:59147048-59147067 Msa0173800:intron 50.0%
CGGCCTACACTTAGTATCTC+TGG + chr1_4:59147078-59147097 None:intergenic 50.0%
CCACAGTTCCTAGAGATGTC+CGG + chr1_4:59147098-59147117 None:intergenic 50.0%
! CATAATCTGCAGTGGGCTCA+GGG - chr1_4:59147158-59147177 Msa0173800:intron 50.0%
ATTTCCGACCGACTGGATTC+TGG + chr1_4:59147410-59147429 None:intergenic 50.0%
ATCAGACATTTCCGACCGAC+TGG + chr1_4:59147417-59147436 None:intergenic 50.0%
ATGAAGGCCCGTCTACATCA+GGG - chr1_4:59147783-59147802 Msa0173800:CDS 50.0%
CCGTCTACATCAGGGGAAAA+TGG - chr1_4:59147791-59147810 Msa0173800:CDS 50.0%
! TCAGGGGAAAATGGAAGCAC+TGG - chr1_4:59147800-59147819 Msa0173800:CDS 50.0%
!! CAGGGGAAAATGGAAGCACT+GGG - chr1_4:59147801-59147820 Msa0173800:CDS 50.0%
AACAGCTTCGTGCTCCTTGT+TGG + chr1_4:59147837-59147856 None:intergenic 50.0%
! AGAGGCATACATGGAAACGG+CGG - chr1_4:59148102-59148121 Msa0173800:intron 50.0%
GGAAACGGCGGAGAATAATC+TGG - chr1_4:59148114-59148133 Msa0173800:intron 50.0%
GCTCTGTCAAGGATGACATG+AGG - chr1_4:59148278-59148297 Msa0173800:intron 50.0%
TAGTACGCATGGAGCTCGAT+AGG - chr1_4:59148326-59148345 Msa0173800:intron 50.0%
GGAGCTCGATAGGATTTCAG+AGG - chr1_4:59148336-59148355 Msa0173800:intron 50.0%
! CCTCTTCAATACTGGTGCTG+TGG + chr1_4:59148465-59148484 None:intergenic 50.0%
! CCACAGCACCAGTATTGAAG+AGG - chr1_4:59148462-59148481 Msa0173800:intron 50.0%
TCACCAATACACAGGGAGGA+GGG + chr1_4:59148496-59148515 None:intergenic 50.0%
TTCACCAATACACAGGGAGG+AGG + chr1_4:59148497-59148516 None:intergenic 50.0%
! TTACCAGAGCATTTGGCGCT+GGG - chr1_4:59149231-59149250 Msa0173800:intron 50.0%
AAGTGGTTGCCCATGTCACA+TGG - chr1_4:59150468-59150487 Msa0173800:CDS 50.0%
TGCCCATGTCACATGGTTCA+TGG - chr1_4:59150475-59150494 Msa0173800:CDS 50.0%
TATTGTGCAGGATCGCCTTC+TGG + chr1_4:59150509-59150528 None:intergenic 50.0%
! CAGGTTAGAATCGGTTCTGG+AGG + chr1_4:59150962-59150981 None:intergenic 50.0%
CTCTTGTAGAGGGATTGGAC+GGG + chr1_4:59151382-59151401 None:intergenic 50.0%
CTCTTCCCCCCAAGAATTAG+AGG - chr1_4:59151672-59151691 Msa0173800:CDS 50.0%
CAAGCCCTCTAATTCTTGGG+GGG + chr1_4:59151680-59151699 None:intergenic 50.0%
CCAAGCCCTCTAATTCTTGG+GGG + chr1_4:59151681-59151700 None:intergenic 50.0%
GCCAAGCCCTCTAATTCTTG+GGG + chr1_4:59151682-59151701 None:intergenic 50.0%
GGCCAAGCCCTCTAATTCTT+GGG + chr1_4:59151683-59151702 None:intergenic 50.0%
AGGCCAAGCCCTCTAATTCT+TGG + chr1_4:59151684-59151703 None:intergenic 50.0%
AGTTGTGGCTGACCATACAC+CGG - chr1_4:59151959-59151978 Msa0173800:five_prime_UTR 50.0%
! TGGTCGTTTCTTTGGAGGGA+AGG - chr1_4:59152295-59152314 Msa0173800:five_prime_UTR 50.0%
ACCGTCCCGTGTCCTTTGAT+AGG - chr1_4:59145669-59145688 Msa0173800:three_prime_UTR 55.0%
GGGGTGGTTATGGGGTTTGA+TGG - chr1_4:59146196-59146215 Msa0173800:intron 55.0%
GTTTCCACAGCAAGGACAGG+TGG - chr1_4:59146630-59146649 Msa0173800:intron 55.0%
CACCAGCAAACATGGCACTC+TGG + chr1_4:59146662-59146681 None:intergenic 55.0%
! GGAACCTGCTGCTTCGTTTG+AGG - chr1_4:59146689-59146708 Msa0173800:intron 55.0%
GTTCCCTCAAACGAAGCAGC+AGG + chr1_4:59146696-59146715 None:intergenic 55.0%
TTCAAAGGTCCAGAACCGCG+TGG + chr1_4:59146753-59146772 None:intergenic 55.0%
!! CGCGGTTCTGGACCTTTGAA+TGG - chr1_4:59146753-59146772 Msa0173800:intron 55.0%
GAGGCAAAGCCTCTCTCCAA+AGG + chr1_4:59146792-59146811 None:intergenic 55.0%
TTGGAGAGAGGCTTTGCCTC+AGG - chr1_4:59146792-59146811 Msa0173800:intron 55.0%
AGGCTTTGCCTCAGGTCCAT+TGG - chr1_4:59146800-59146819 Msa0173800:intron 55.0%
CATGTCTGGGCCGATAGAGA+AGG - chr1_4:59146839-59146858 Msa0173800:intron 55.0%
TGTCTGGGCCGATAGAGAAG+GGG - chr1_4:59146841-59146860 Msa0173800:intron 55.0%
! CGCAAGTGGTGCCGAAAAGT+TGG + chr1_4:59146901-59146920 None:intergenic 55.0%
AGCACTCCATGGGTGGAAGT+TGG - chr1_4:59147006-59147025 Msa0173800:intron 55.0%
GGCCATGCCAACTGAGTAAC+CGG + chr1_4:59147053-59147072 None:intergenic 55.0%
AGTGTAGGCCGGACATCTCT+AGG - chr1_4:59147087-59147106 Msa0173800:intron 55.0%
! CCGGACATCTCTAGGAACTG+TGG - chr1_4:59147095-59147114 Msa0173800:intron 55.0%
! GCATAATCTGCAGTGGGCTC+AGG - chr1_4:59147157-59147176 Msa0173800:intron 55.0%
AGGGAAAGGCCGGTGAAGAT+AGG - chr1_4:59147177-59147196 Msa0173800:intron 55.0%
GGGAAAGGCCGGTGAAGATA+GGG - chr1_4:59147178-59147197 Msa0173800:intron 55.0%
!! CCGACTGGATTCTGGAGCAA+CGG + chr1_4:59147402-59147421 None:intergenic 55.0%
CCGTTGCTCCAGAATCCAGT+CGG - chr1_4:59147399-59147418 Msa0173800:intron 55.0%
TGCTCCAGAATCCAGTCGGT+CGG - chr1_4:59147403-59147422 Msa0173800:intron 55.0%
GATGAAGGCCCGTCTACATC+AGG - chr1_4:59147782-59147801 Msa0173800:CDS 55.0%
TGAAGGCCCGTCTACATCAG+GGG - chr1_4:59147784-59147803 Msa0173800:CDS 55.0%
ACCAATACACAGGGAGGAGG+GGG + chr1_4:59148494-59148513 None:intergenic 55.0%
CACCAATACACAGGGAGGAG+GGG + chr1_4:59148495-59148514 None:intergenic 55.0%
! GTTACCAGAGCATTTGGCGC+TGG - chr1_4:59149230-59149249 Msa0173800:intron 55.0%
! TTGGCGCTGGGTTCTTGAAG+AGG - chr1_4:59149243-59149262 Msa0173800:intron 55.0%
! TGGCGCTGGGTTCTTGAAGA+GGG - chr1_4:59149244-59149263 Msa0173800:intron 55.0%
ACTGGTGTGTGCGTGCAATC+TGG - chr1_4:59151275-59151294 Msa0173800:CDS 55.0%
CCCCCAAGAATTAGAGGGCT+TGG - chr1_4:59151678-59151697 Msa0173800:CDS 55.0%
TCCACAGCAAGGACAGGTGG+CGG - chr1_4:59146633-59146652 Msa0173800:intron 60.0%
CCTTTGCAGCCAGTTCCACG+CGG - chr1_4:59146735-59146754 Msa0173800:intron 60.0%
GTCTGGGCCGATAGAGAAGG+GGG - chr1_4:59146842-59146861 Msa0173800:intron 60.0%
! TTTTCGGCACCACTTGCGCG+TGG - chr1_4:59146903-59146922 Msa0173800:intron 60.0%
! TCTGCAGTGGGCTCAGGGAA+AGG - chr1_4:59147163-59147182 Msa0173800:intron 60.0%
TCCCCCTCCTCCCTGTGTAT+TGG - chr1_4:59148490-59148509 Msa0173800:intron 60.0%
GAACCCAGCGCCAAATGCTC+TGG + chr1_4:59149237-59149256 None:intergenic 60.0%
GGCTGACCATACACCGGAGT+AGG - chr1_4:59151965-59151984 Msa0173800:five_prime_UTR 60.0%
ACCGCCACCTGTCCTTGCTG+TGG + chr1_4:59146637-59146656 None:intergenic 65.0%
CCGCGTGGAACTGGCTGCAA+AGG + chr1_4:59146738-59146757 None:intergenic 65.0%
CAGCCAGTTCCACGCGGTTC+TGG - chr1_4:59146741-59146760 Msa0173800:intron 65.0%
GGTCCAGAACCGCGTGGAAC+TGG + chr1_4:59146747-59146766 None:intergenic 65.0%
CACCACTTGCGCGTGGTCGT+AGG - chr1_4:59146910-59146929 Msa0173800:intron 65.0%
CTCCTACGACCACGCGCAAG+TGG + chr1_4:59146915-59146934 None:intergenic 65.0%
CACTTGCGCGTGGTCGTAGG+AGG - chr1_4:59146913-59146932 Msa0173800:intron 65.0%
! CAGTGGGCTCAGGGAAAGGC+CGG - chr1_4:59147167-59147186 Msa0173800:intron 65.0%
TGAGTATGCGCGCGCGCGTG+TGG + chr1_4:59151213-59151232 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59145645 59152591 59145645 ID=Msa0173800;Name=Msa0173800
chr1_4 mRNA 59145645 59152591 59145645 ID=Msa0173800-mRNA-1;Parent=Msa0173800;Name=Msa0173800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=655|1|1|1|1|1|4|253|892
chr1_4 exon 59145645 59146013 59145645 ID=Msa0173800-mRNA-1:exon:18505;Parent=Msa0173800-mRNA-1
chr1_4 exon 59147667 59147931 59147667 ID=Msa0173800-mRNA-1:exon:18504;Parent=Msa0173800-mRNA-1
chr1_4 exon 59148971 59149084 59148971 ID=Msa0173800-mRNA-1:exon:18503;Parent=Msa0173800-mRNA-1
chr1_4 exon 59149753 59152591 59149753 ID=Msa0173800-mRNA-1:exon:18502;Parent=Msa0173800-mRNA-1
chr1_4 five_prime_UTR 59151937 59152591 59151937 ID=Msa0173800-mRNA-1:five_prime_utr;Parent=Msa0173800-mRNA-1
chr1_4 CDS 59149753 59151936 59149753 ID=Msa0173800-mRNA-1:cds;Parent=Msa0173800-mRNA-1
chr1_4 CDS 59148971 59149084 59148971 ID=Msa0173800-mRNA-1:cds;Parent=Msa0173800-mRNA-1
chr1_4 CDS 59147667 59147931 59147667 ID=Msa0173800-mRNA-1:cds;Parent=Msa0173800-mRNA-1
chr1_4 CDS 59145898 59146013 59145898 ID=Msa0173800-mRNA-1:cds;Parent=Msa0173800-mRNA-1
chr1_4 three_prime_UTR 59145645 59145897 59145645 ID=Msa0173800-mRNA-1:three_prime_utr;Parent=Msa0173800-mRNA-1
Gene Sequence

>Msa0173800

ATGGGTAACGGCACTTCTCGTGTTGTTGGTTGTTTAGTGCCATTCAATGGTAAAAATGGTGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGTTTAGGACATTCTTTTTGTTATGTGAGACCAACTATGTTTGAATCTCCTGCTATTAGTCCATCGAATTCTGAGAGGTTTACCGTTGATTCAAGCACTCTTGATTCTGAAACCTTGAGTGGTTCGTTTAGGCATGATAGTATGGAGCATTCTAATTCTTCTGGTTTACACAAGCAGGGTAAGAATTTCCCTGAAACTACGTTTAAGACGATTTCAGGGGCTTCTGTTAGTGCCAATGTTTCCACAGCAAGGACAGGTGGCGGTAACCAGAGTGCCATGTTTGCTGGTGATTTCTTGGAACCTGCTGCTTCGTTTGAGGGAACTGCTTCGTTTGCTGCAATTCCTTTGCAGCCAGTTCCACGCGGTTCTGGACCTTTGAATGGTTTTATGTCTGGTCCTTTGGAGAGAGGCTTTGCCTCAGGTCCATTGGATAGAAGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGGGTTATGTCAGGTCCTCTTGATGACACTGATAAATCCAACTTTTCGGCACCACTTGCGCGTGGTCGTAGGAGGCCGCGTCTACAACATCTCATGAGAAGTGTTAGTGGACCGGTGAAGAACACGTTTTCTCGAACATTCTCTAAGCACTCCATGGGTGGAAGTTGGATGCAAAGGTTGTTCTTTCAACCGGTTACTCAGTTGGCATGGCCTTCCAGAGATACTAAGTGTAGGCCGGACATCTCTAGGAACTGTGGTATTGATGTTGTACCGTATGAAGCTGAGTATAAACACACGCATAATCTGCAGTGGGCTCAGGGAAAGGCCGGTGAAGATAGGGTTCATGTAGTTCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGACGGTTTTAGTGGACCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTGTAGATTCCCTTAAACCCGAAGTCCCTGAAACTTTAAAAGCTACCGTTGCTCCAGAATCCAGTCGGTCGGAAATGTCTGATACTCATACTAATTCTAATCAAGAATGTTTTGAAGCTTGTTCTGGTCCTGAATTAATCAAGGATCAATCATTTAACAATGAGATAGTTGAGGAAAAGGCTGAAGTTAATGTAAATGTTGAACACCAGTTATCTAATTGTGGAAGTAGCTTGTCTACTGTTTCTAATTCTGTTCAACATGAAAAGTTGACTGGAAAAGGTAAAAGAAGTTTAAGGCTTTATGAGCTACTTCAAATGGAATCTTGGGATGATCAATGTAATGATTCCTCAGTTCCGATGGAGTCAATACTAGATGAGCATACAAGACCTTGCTCGTCTACTGTAAGAGAAGATGGCTCTAAACATCAGGATGAAGGCCCGTCTACATCAGGGGAAAATGGAAGCACTGGGTTTGGTTCAACCAACAAGGAGCACGAAGCTGTTTTTCCTGCTTCTGTATCAAGGCAGAATTCAAAAAAGTCATTTATCGGTGCAAAAATTAAAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCATAGGGAAGAAAGTAGTGTTGATGAGAAAATATTAGAAGCCTCTGGACCTATTAGAAAATGCAGGTCTGGAGTAGATCATAACGCAGTTTTAACAGCAATGGCTCGAGCTCTTGAAAGAACAGAAGAGGCATACATGGAAACGGCGGAGAATAATCTGGACAAAAATCCAGAACTTGCTATAATGGGGTCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGCCATCCTAATTCAAGCTCTGTCAAGGATGACATGAGGCATAGAAATAGATCTAGAGAGTCATTAGTACGCATGGAGCTCGATAGGATTTCAGAGGAGTCTCCAATTCACAACCATAACAATCATGTTATCAAGATGAATAAAAACCGCGAGATATCATTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGACCACAGCACCAGTATTGAAGAGGAAGTTTCAAGAATAAGAGCAGAACACCCTGATGATAGTCAGGCCATATTGAATGATCGAGTGAAAGGAAATTTAAAAGTTACCAGAGCATTTGGCGCTGGGTTCTTGAAGAGGCCGTCTTTTAACGAAGCTCTACTCGAGGTGTTTCAAGTTAAATATATCGGCTCTGCTCCTTACCTAAGTTGCACTCCTTCTGTACTTCACCATCGACTTTCTTCAAGTGACCGATTCTTGGTACTCTCCTCTGATGGGCTTTACCAATATTTCAGCAATGAAGAAGTGGTTGCCCATGTCACATGGTTCATGGAAAATGTTCCAGAAGGCGATCCTGCACAATACCTTATTGCAGAGCTTCTCTTCTGCGCTGCTAAAAAGAATGGAATGGATTTTCATGAACTGCTTGATATTCCTCATGGAGATCGGCGTAAATATCACGATGATGTATCTGTCATGGTCGTTTCTTTGGAGGGAAGGATTTGGAGATCATCGGGATAA
Protein sequence

>Msa0173800

MGNGTSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTMFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEHSNSSGLHKQGKNFPETTFKTISGASVSANVSTARTGGGNQSAMFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQHLMRSVSGPVKNTFSRTFSKHSMGGSWMQRLFFQPVTQLAWPSRDTKCRPDISRNCGIDVVPYEAEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDSLKPEVPETLKATVAPESSRSEMSDTHTNSNQECFEACSGPELIKDQSFNNEIVEEKAEVNVNVEHQLSNCGSSLSTVSNSVQHEKLTGKGKRSLRLYELLQMESWDDQCNDSSVPMESILDEHTRPCSSTVREDGSKHQDEGPSTSGENGSTGFGSTNKEHEAVFPASVSRQNSKKSFIGAKIKKMYRKPKSLCKKLFPWSYDWHREESSVDEKILEASGPIRKCRSGVDHNAVLTAMARALERTEEAYMETAENNLDKNPELAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSSSVKDDMRHRNRSRESLVRMELDRISEESPIHNHNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVSRIRAEHPDDSQAILNDRVKGNLKVTRAFGAGFLKRPSFNEALLEVFQVKYIGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG*