Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813470 | XP_024642270.2 | 84.932 | 73 | 11 | 0 | 32 | 104 | 968 | 1040 | 2.28e-32 | 136 |
| Msa0813470 | XP_024642270.2 | 88.194 | 144 | 17 | 0 | 104 | 247 | 1253 | 1396 | 3.38e-77 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813470 | A0A2K3NJY4 | 69.444 | 144 | 44 | 0 | 104 | 247 | 205 | 348 | 1.39e-61 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0813470 | Msa0872030 | 0.942993 | 2.676870e-102 | -8.615850e-47 |
| Msa0813470 | Msa1075690 | 0.898927 | 3.282659e-77 | -8.615850e-47 |
| Msa0813470 | Msa1131640 | 0.935084 | 1.478152e-96 | -8.615850e-47 |
| Msa0813470 | Msa1131730 | 0.883345 | 4.853460e-71 | -8.615850e-47 |
| Msa0813470 | Msa1237120 | 0.819476 | 1.138448e-52 | -8.615850e-47 |
| Msa0813470 | Msa1242860 | 0.974636 | 1.659178e-138 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813470 | MtrunA17_Chr3g0101861 | 67.133 | 143 | 47 | 0 | 104 | 246 | 201 | 343 | 3.88e-61 | 199 |
| Msa0813470 | MtrunA17_Chr1g0173691 | 50.000 | 144 | 72 | 0 | 104 | 247 | 107 | 250 | 1.63e-43 | 150 |
| Msa0813470 | MtrunA17_Chr3g0133361 | 45.455 | 154 | 82 | 1 | 95 | 246 | 18 | 171 | 2.44e-43 | 148 |
| Msa0813470 | MtrunA17_Chr6g0472831 | 44.444 | 144 | 80 | 0 | 104 | 247 | 29 | 172 | 1.10e-39 | 137 |
| Msa0813470 | MtrunA17_Chr7g0269671 | 46.309 | 149 | 72 | 3 | 105 | 246 | 103 | 250 | 7.56e-34 | 124 |
| Msa0813470 | MtrunA17_Chr3g0101871 | 64.368 | 87 | 31 | 0 | 1 | 87 | 1014 | 1100 | 1.87e-32 | 125 |
| Msa0813470 | MtrunA17_Chr7g0248821 | 57.333 | 75 | 32 | 0 | 172 | 246 | 1 | 75 | 5.80e-22 | 90.1 |
| Msa0813470 | MtrunA17_Chr1g0206511 | 57.895 | 76 | 32 | 0 | 171 | 246 | 1 | 76 | 1.09e-21 | 89.4 |
| Msa0813470 | MtrunA17_Chr3g0100401 | 55.000 | 80 | 28 | 2 | 171 | 246 | 1 | 76 | 2.44e-21 | 86.3 |
| Msa0813470 | MtrunA17_Chr1g0206501 | 35.922 | 103 | 65 | 1 | 3 | 104 | 130 | 232 | 2.06e-14 | 72.0 |
| Msa0813470 | MtrunA17_Chr1g0173681 | 43.077 | 65 | 37 | 0 | 1 | 65 | 271 | 335 | 3.56e-11 | 62.4 |
| Msa0813470 | MtrunA17_Chr7g0269661 | 34.951 | 103 | 67 | 0 | 1 | 103 | 39 | 141 | 5.73e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0813470 | AT3G51690.1 | 42.254 | 142 | 78 | 2 | 105 | 246 | 71 | 208 | 7.45e-27 | 106 |
| Msa0813470 | AT3G51700.1 | 40.845 | 142 | 83 | 1 | 105 | 246 | 72 | 212 | 1.63e-24 | 100 |
| Msa0813470 | AT5G28780.1 | 41.379 | 116 | 64 | 2 | 133 | 246 | 97 | 210 | 5.67e-20 | 87.8 |
Find 46 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTTGCTTCTCTTAC+AGG | 0.168521 | 5_3:-44227214 | Msa0813470:intron |
| AGATTTCTTAACAACATTAT+TGG | 0.221249 | 5_3:+44226021 | None:intergenic |
| TGAAGGCAATTTAGAAATTC+TGG | 0.223053 | 5_3:+44226090 | None:intergenic |
| TATATTAGCTTCAACAATTC+AGG | 0.244967 | 5_3:-44226306 | Msa0813470:CDS |
| AGTTGCTTCACCGCGATCTA+TGG | 0.281966 | 5_3:+44226140 | None:intergenic |
| AAAATTTGTTCTTGAACAAT+AGG | 0.292476 | 5_3:+44227241 | None:intergenic |
| ATGGAGAATTCTTGAGGAAT+AGG | 0.307309 | 5_3:-44226331 | Msa0813470:CDS |
| CTAAATTGCCTTCAAACGTC+TGG | 0.336659 | 5_3:-44226081 | Msa0813470:CDS |
| TGGATAGGCCTAATCATGTT+TGG | 0.353529 | 5_3:-44227584 | Msa0813470:CDS |
| AAATGATGGTTACTATGATA+TGG | 0.366358 | 5_3:-44226447 | Msa0813470:CDS |
| TTGAGCTTGATAGTATGATT+AGG | 0.386178 | 5_3:+44226054 | None:intergenic |
| GGTTATGTTGCTGATTTCTT+CGG | 0.388583 | 5_3:-44227298 | Msa0813470:CDS |
| TGGAGAATTCTTGAGGAATA+GGG | 0.422054 | 5_3:-44226330 | Msa0813470:CDS |
| GGATAGGCCTAATCATGTTT+GGG | 0.424172 | 5_3:-44227583 | Msa0813470:CDS |
| GCTTGGACGATTGCAGCAAT+AGG | 0.447314 | 5_3:+44226386 | None:intergenic |
| ATAAATTTGGATATGTAGCT+TGG | 0.452666 | 5_3:+44226369 | None:intergenic |
| AAATCAGCAACATAACCATT+TGG | 0.456921 | 5_3:+44227304 | None:intergenic |
| CATACTATCAAGCTCAAAGT+TGG | 0.460185 | 5_3:-44226048 | Msa0813470:CDS |
| AACACTTGCAATCTAACAAA+AGG | 0.468910 | 5_3:-44227357 | Msa0813470:CDS |
| TAGGCAACCCAGACGTTTGA+AGG | 0.478685 | 5_3:+44226073 | None:intergenic |
| TCATGGAAGTTCCTCTCTGA+TGG | 0.479207 | 5_3:-44227555 | Msa0813470:CDS |
| TTCAAAATGGAGAATTCTTG+AGG | 0.486826 | 5_3:-44226337 | Msa0813470:CDS |
| TAATTGTGCAGGAGAAGAAA+AGG | 0.495174 | 5_3:-44226181 | Msa0813470:intron |
| TATTGTAGCTTTAATTCTAA+CGG | 0.497576 | 5_3:-44227419 | Msa0813470:intron |
| ATCATGTTTGGGAAAACTCA+TGG | 0.501729 | 5_3:-44227572 | Msa0813470:CDS |
| AGCTTTAATTCTAACGGATG+AGG | 0.502130 | 5_3:-44227413 | Msa0813470:CDS |
| CAAGCTGAGGGCTTATGTAA+TGG | 0.502481 | 5_3:-44225994 | Msa0813470:CDS |
| GAAATTGGTAAGGGAAATGA+TGG | 0.506112 | 5_3:-44226461 | Msa0813470:CDS |
| ATGGAATTCTTTATGATCAA+AGG | 0.507330 | 5_3:-44227536 | Msa0813470:CDS |
| TAAATTGCCTTCAAACGTCT+GGG | 0.508177 | 5_3:-44226080 | Msa0813470:CDS |
| AAATGCATGCCGTATCCAAA+TGG | 0.527092 | 5_3:-44227319 | Msa0813470:CDS |
| AGGAGGCTCACACGAAATCC+AGG | 0.529108 | 5_3:-44227516 | Msa0813470:intron |
| AAATCAGTTATCAAAAGCTC+AGG | 0.529188 | 5_3:+44226416 | None:intergenic |
| TCAGTTATCAAAAGCTCAGG+TGG | 0.546640 | 5_3:+44226419 | None:intergenic |
| ACAGATTAATACATGATGAA+AGG | 0.569383 | 5_3:-44227273 | Msa0813470:CDS |
| TGGGAATGGAGAAATTGGTA+AGG | 0.581741 | 5_3:-44226471 | Msa0813470:intron |
| TACTGTCTCAATCAATGGAT+AGG | 0.594802 | 5_3:-44227599 | None:intergenic |
| CATTACATAAGCCCTCAGCT+TGG | 0.598858 | 5_3:+44225995 | None:intergenic |
| GCAACATAACCATTTGGATA+CGG | 0.603860 | 5_3:+44227310 | None:intergenic |
| CAGTTATCAAAAGCTCAGGT+GGG | 0.618774 | 5_3:+44226420 | None:intergenic |
| GAATTCTTTATGATCAAAGG+AGG | 0.629297 | 5_3:-44227533 | Msa0813470:CDS |
| AGTTCAAATTCCATAGATCG+CGG | 0.665211 | 5_3:-44226150 | Msa0813470:CDS |
| AGAAATCTAGACCAAGCTGA+GGG | 0.666049 | 5_3:-44226006 | Msa0813470:CDS |
| CATAAAGAATTCCATCAGAG+AGG | 0.668846 | 5_3:+44227544 | None:intergenic |
| GGGAATGGAGAAATTGGTAA+GGG | 0.673398 | 5_3:-44226470 | Msa0813470:intron |
| AAGAAATCTAGACCAAGCTG+AGG | 0.674713 | 5_3:-44226007 | Msa0813470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr5_3:44227213-44227232 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr5_3:44227216-44227235 | Msa0813470:CDS | 15.0% |
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr5_3:44227213-44227232 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr5_3:44227216-44227235 | Msa0813470:CDS | 15.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr5_3:44226138-44226157 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr5_3:44226147-44226166 | Msa0813470:CDS | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr5_3:44226328-44226347 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr5_3:44226480-44226499 | Msa0813470:intron | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr5_3:44226859-44226878 | Msa0813470:intron | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr5_3:44227548-44227567 | None:intergenic | 20.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr5_3:44226138-44226157 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr5_3:44226147-44226166 | Msa0813470:CDS | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr5_3:44226328-44226347 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr5_3:44226480-44226499 | Msa0813470:intron | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr5_3:44226859-44226878 | Msa0813470:intron | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr5_3:44227548-44227567 | None:intergenic | 20.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr5_3:44226030-44226049 | Msa0813470:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr5_3:44226293-44226312 | Msa0813470:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr5_3:44226561-44226580 | Msa0813470:intron | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr5_3:44226758-44226777 | Msa0813470:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr5_3:44226759-44226778 | Msa0813470:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr5_3:44226969-44226988 | Msa0813470:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr5_3:44227019-44227038 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr5_3:44227018-44227037 | Msa0813470:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr5_3:44227061-44227080 | Msa0813470:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr5_3:44227119-44227138 | Msa0813470:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr5_3:44227200-44227219 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr5_3:44227260-44227279 | Msa0813470:CDS | 25.0% |
| ! | ATATCGATAAGTATATTACC+TGG | + | chr5_3:44227324-44227343 | None:intergenic | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr5_3:44227374-44227393 | Msa0813470:CDS | 25.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr5_3:44226030-44226049 | Msa0813470:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr5_3:44226293-44226312 | Msa0813470:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr5_3:44226561-44226580 | Msa0813470:intron | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr5_3:44226758-44226777 | Msa0813470:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr5_3:44226759-44226778 | Msa0813470:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr5_3:44226969-44226988 | Msa0813470:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr5_3:44227019-44227038 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr5_3:44227018-44227037 | Msa0813470:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr5_3:44227061-44227080 | Msa0813470:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr5_3:44227119-44227138 | Msa0813470:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr5_3:44227200-44227219 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr5_3:44227260-44227279 | Msa0813470:CDS | 25.0% |
| ! | ATATCGATAAGTATATTACC+TGG | + | chr5_3:44227324-44227343 | None:intergenic | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr5_3:44227374-44227393 | Msa0813470:CDS | 25.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr5_3:44226033-44226052 | Msa0813470:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr5_3:44226071-44226090 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr5_3:44226209-44226228 | Msa0813470:intron | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr5_3:44226265-44226284 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr5_3:44226455-44226474 | Msa0813470:CDS | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr5_3:44226456-44226475 | Msa0813470:CDS | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr5_3:44226457-44226476 | Msa0813470:CDS | 30.0% | |
| ATTGCTTCTTTATTACTACC+AGG | - | chr5_3:44226637-44226656 | Msa0813470:intron | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr5_3:44226765-44226784 | Msa0813470:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr5_3:44226833-44226852 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr5_3:44226832-44226851 | Msa0813470:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr5_3:44226865-44226884 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr5_3:44226862-44226881 | Msa0813470:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr5_3:44226963-44226982 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr5_3:44226968-44226987 | Msa0813470:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr5_3:44226996-44227015 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr5_3:44227070-44227089 | Msa0813470:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr5_3:44227071-44227090 | Msa0813470:intron | 30.0% |
| AAATCAGTTATCAAAAGCTC+AGG | + | chr5_3:44227153-44227172 | None:intergenic | 30.0% | |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr5_3:44227229-44227248 | Msa0813470:CDS | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr5_3:44227303-44227322 | Msa0813470:CDS | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr5_3:44227479-44227498 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr5_3:44227515-44227534 | None:intergenic | 30.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr5_3:44226033-44226052 | Msa0813470:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr5_3:44226071-44226090 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr5_3:44226209-44226228 | Msa0813470:intron | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr5_3:44226265-44226284 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr5_3:44226455-44226474 | Msa0813470:CDS | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr5_3:44226456-44226475 | Msa0813470:CDS | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr5_3:44226457-44226476 | Msa0813470:CDS | 30.0% | |
| ATTGCTTCTTTATTACTACC+AGG | - | chr5_3:44226637-44226656 | Msa0813470:intron | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr5_3:44226765-44226784 | Msa0813470:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr5_3:44226833-44226852 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr5_3:44226832-44226851 | Msa0813470:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr5_3:44226865-44226884 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr5_3:44226862-44226881 | Msa0813470:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr5_3:44226963-44226982 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr5_3:44226968-44226987 | Msa0813470:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr5_3:44226996-44227015 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr5_3:44227070-44227089 | Msa0813470:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr5_3:44227071-44227090 | Msa0813470:intron | 30.0% |
| AAATCAGTTATCAAAAGCTC+AGG | + | chr5_3:44227153-44227172 | None:intergenic | 30.0% | |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr5_3:44227229-44227248 | Msa0813470:CDS | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr5_3:44227303-44227322 | Msa0813470:CDS | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr5_3:44227479-44227498 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr5_3:44227515-44227534 | None:intergenic | 30.0% |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr5_3:44225993-44226012 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr5_3:44225994-44226013 | Msa0813470:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr5_3:44226025-44226044 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr5_3:44226153-44226172 | Msa0813470:CDS | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr5_3:44226259-44226278 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr5_3:44226268-44226287 | Msa0813470:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr5_3:44226352-44226371 | Msa0813470:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr5_3:44226526-44226545 | Msa0813470:intron | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr5_3:44226529-44226548 | Msa0813470:intron | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr5_3:44226551-44226570 | Msa0813470:intron | 35.0% | |
| TCGATCTGCAACATAGAAAA+AGG | - | chr5_3:44226712-44226731 | Msa0813470:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr5_3:44226793-44226812 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr5_3:44226880-44226899 | Msa0813470:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr5_3:44226883-44226902 | Msa0813470:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr5_3:44227105-44227124 | Msa0813470:intron | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr5_3:44227235-44227254 | Msa0813470:CDS | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr5_3:44227236-44227255 | Msa0813470:CDS | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr5_3:44227385-44227404 | Msa0813470:CDS | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr5_3:44227416-44227435 | Msa0813470:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr5_3:44227486-44227505 | Msa0813470:intron | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr5_3:44227518-44227537 | Msa0813470:CDS | 35.0% | |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr5_3:44225993-44226012 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr5_3:44225994-44226013 | Msa0813470:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr5_3:44226025-44226044 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr5_3:44226153-44226172 | Msa0813470:CDS | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr5_3:44226259-44226278 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr5_3:44226268-44226287 | Msa0813470:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr5_3:44226352-44226371 | Msa0813470:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr5_3:44226526-44226545 | Msa0813470:intron | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr5_3:44226529-44226548 | Msa0813470:intron | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr5_3:44226551-44226570 | Msa0813470:intron | 35.0% | |
| TCGATCTGCAACATAGAAAA+AGG | - | chr5_3:44226712-44226731 | Msa0813470:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr5_3:44226793-44226812 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr5_3:44226880-44226899 | Msa0813470:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr5_3:44226883-44226902 | Msa0813470:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr5_3:44227105-44227124 | Msa0813470:intron | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr5_3:44227235-44227254 | Msa0813470:CDS | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr5_3:44227236-44227255 | Msa0813470:CDS | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr5_3:44227385-44227404 | Msa0813470:CDS | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr5_3:44227416-44227435 | Msa0813470:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr5_3:44227486-44227505 | Msa0813470:intron | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr5_3:44227518-44227537 | Msa0813470:CDS | 35.0% | |
| TGGATAGGCCTAATCATGTT+TGG | - | chr5_3:44225982-44226001 | Msa0813470:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr5_3:44225983-44226002 | Msa0813470:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr5_3:44226247-44226266 | Msa0813470:intron | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr5_3:44226486-44226505 | Msa0813470:intron | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr5_3:44226536-44226555 | Msa0813470:intron | 40.0% | |
| GCTTCTTTATTACTACCAGG+TGG | - | chr5_3:44226640-44226659 | Msa0813470:intron | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr5_3:44226835-44226854 | Msa0813470:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr5_3:44226937-44226956 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr5_3:44227075-44227094 | Msa0813470:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr5_3:44227076-44227095 | Msa0813470:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr5_3:44227095-44227114 | Msa0813470:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr5_3:44227096-44227115 | Msa0813470:intron | 40.0% | |
| CAGTTATCAAAAGCTCAGGT+GGG | + | chr5_3:44227149-44227168 | None:intergenic | 40.0% | |
| TCAGTTATCAAAAGCTCAGG+TGG | + | chr5_3:44227150-44227169 | None:intergenic | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr5_3:44227485-44227504 | Msa0813470:intron | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr5_3:44227559-44227578 | Msa0813470:CDS | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr5_3:44227560-44227579 | Msa0813470:CDS | 40.0% | |
| TGGATAGGCCTAATCATGTT+TGG | - | chr5_3:44225982-44226001 | Msa0813470:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr5_3:44225983-44226002 | Msa0813470:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr5_3:44226247-44226266 | Msa0813470:intron | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr5_3:44226486-44226505 | Msa0813470:intron | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr5_3:44226536-44226555 | Msa0813470:intron | 40.0% | |
| GCTTCTTTATTACTACCAGG+TGG | - | chr5_3:44226640-44226659 | Msa0813470:intron | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr5_3:44226835-44226854 | Msa0813470:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr5_3:44226937-44226956 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr5_3:44227075-44227094 | Msa0813470:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr5_3:44227076-44227095 | Msa0813470:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr5_3:44227095-44227114 | Msa0813470:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr5_3:44227096-44227115 | Msa0813470:intron | 40.0% | |
| CAGTTATCAAAAGCTCAGGT+GGG | + | chr5_3:44227149-44227168 | None:intergenic | 40.0% | |
| TCAGTTATCAAAAGCTCAGG+TGG | + | chr5_3:44227150-44227169 | None:intergenic | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr5_3:44227485-44227504 | Msa0813470:intron | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr5_3:44227559-44227578 | Msa0813470:CDS | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr5_3:44227560-44227579 | Msa0813470:CDS | 40.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr5_3:44226011-44226030 | Msa0813470:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr5_3:44226520-44226539 | Msa0813470:intron | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr5_3:44226537-44226556 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr5_3:44226535-44226554 | Msa0813470:intron | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr5_3:44226613-44226632 | Msa0813470:intron | 45.0% | |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr5_3:44226694-44226713 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr5_3:44226700-44226719 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr5_3:44226980-44226999 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr5_3:44227081-44227100 | Msa0813470:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr5_3:44227090-44227109 | Msa0813470:intron | 45.0% | |
| CATTACATAAGCCCTCAGCT+TGG | + | chr5_3:44227574-44227593 | None:intergenic | 45.0% | |
| CAAGCTGAGGGCTTATGTAA+TGG | - | chr5_3:44227572-44227591 | Msa0813470:CDS | 45.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr5_3:44226011-44226030 | Msa0813470:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr5_3:44226520-44226539 | Msa0813470:intron | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr5_3:44226537-44226556 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr5_3:44226535-44226554 | Msa0813470:intron | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr5_3:44226613-44226632 | Msa0813470:intron | 45.0% | |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr5_3:44226694-44226713 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr5_3:44226700-44226719 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr5_3:44226980-44226999 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr5_3:44227081-44227100 | Msa0813470:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr5_3:44227090-44227109 | Msa0813470:intron | 45.0% | |
| CATTACATAAGCCCTCAGCT+TGG | + | chr5_3:44227574-44227593 | None:intergenic | 45.0% | |
| CAAGCTGAGGGCTTATGTAA+TGG | - | chr5_3:44227572-44227591 | Msa0813470:CDS | 45.0% | |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr5_3:44226499-44226518 | Msa0813470:intron | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr5_3:44226658-44226677 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr5_3:44226774-44226793 | Msa0813470:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr5_3:44226916-44226935 | Msa0813470:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr5_3:44226928-44226947 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr5_3:44227183-44227202 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr5_3:44227429-44227448 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr5_3:44227496-44227515 | None:intergenic | 50.0% | |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr5_3:44226499-44226518 | Msa0813470:intron | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr5_3:44226658-44226677 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr5_3:44226774-44226793 | Msa0813470:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr5_3:44226916-44226935 | Msa0813470:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr5_3:44226928-44226947 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr5_3:44227183-44227202 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr5_3:44227429-44227448 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr5_3:44227496-44227515 | None:intergenic | 50.0% | |
| AGGAGGCTCACACGAAATCC+AGG | - | chr5_3:44226050-44226069 | Msa0813470:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr5_3:44226502-44226521 | Msa0813470:intron | 55.0% | |
| AGGAGGCTCACACGAAATCC+AGG | - | chr5_3:44226050-44226069 | Msa0813470:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr5_3:44226502-44226521 | Msa0813470:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 44225981 | 44227607 | 44225981 | ID=Msa0813470;Name=Msa0813470 |
| chr5_3 | mRNA | 44225981 | 44227607 | 44225981 | ID=Msa0813470-mRNA-1;Parent=Msa0813470;Name=Msa0813470-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0.66|0.5|4|0|247 |
| chr5_3 | exon | 44227517 | 44227607 | 44227517 | ID=Msa0813470-mRNA-1:exon:13675;Parent=Msa0813470-mRNA-1 |
| chr5_3 | exon | 44227215 | 44227433 | 44227215 | ID=Msa0813470-mRNA-1:exon:13674;Parent=Msa0813470-mRNA-1 |
| chr5_3 | exon | 44226264 | 44226482 | 44226264 | ID=Msa0813470-mRNA-1:exon:13673;Parent=Msa0813470-mRNA-1 |
| chr5_3 | exon | 44225981 | 44226192 | 44225981 | ID=Msa0813470-mRNA-1:exon:13672;Parent=Msa0813470-mRNA-1 |
| chr5_3 | CDS | 44227517 | 44227607 | 44227517 | ID=Msa0813470-mRNA-1:cds;Parent=Msa0813470-mRNA-1 |
| chr5_3 | CDS | 44227215 | 44227433 | 44227215 | ID=Msa0813470-mRNA-1:cds;Parent=Msa0813470-mRNA-1 |
| chr5_3 | CDS | 44226264 | 44226482 | 44226264 | ID=Msa0813470-mRNA-1:cds;Parent=Msa0813470-mRNA-1 |
| chr5_3 | CDS | 44225981 | 44226192 | 44225981 | ID=Msa0813470-mRNA-1:cds;Parent=Msa0813470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
