Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131640 | XP_039687880.1 | 83.193 | 119 | 20 | 0 | 104 | 222 | 994 | 1112 | 3.56e-57 | 206 |
| Msa1131640 | XP_039687880.1 | 90.000 | 110 | 11 | 0 | 1 | 110 | 654 | 763 | 9.74e-61 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131640 | A0A2K3M765 | 70.588 | 119 | 35 | 0 | 104 | 222 | 223 | 341 | 1.28e-49 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0813470 | Msa1131640 | 0.935084 | 1.478152e-96 | -8.615850e-47 |
| Msa1075690 | Msa1131640 | 0.930484 | 1.532332e-93 | -8.615850e-47 |
| Msa1131640 | Msa1131730 | 0.931807 | 2.186680e-94 | -8.615850e-47 |
| Msa1131640 | Msa1237100 | 0.811078 | 8.381127e-51 | -8.615850e-47 |
| Msa1131640 | Msa1242860 | 0.942138 | 1.221729e-101 | -8.615850e-47 |
| Msa0872030 | Msa1131640 | 0.919065 | 7.167633e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131640 | MtrunA17_Chr3g0101861 | 65.546 | 119 | 41 | 0 | 104 | 222 | 219 | 337 | 2.42e-47 | 162 |
| Msa1131640 | MtrunA17_Chr3g0101871 | 64.516 | 93 | 33 | 0 | 1 | 93 | 1008 | 1100 | 3.31e-35 | 132 |
| Msa1131640 | MtrunA17_Chr1g0173691 | 50.420 | 119 | 59 | 0 | 104 | 222 | 125 | 243 | 2.18e-33 | 123 |
| Msa1131640 | MtrunA17_Chr3g0133361 | 46.903 | 113 | 60 | 0 | 110 | 222 | 53 | 165 | 2.92e-33 | 121 |
| Msa1131640 | MtrunA17_Chr6g0472831 | 45.946 | 111 | 60 | 0 | 112 | 222 | 55 | 165 | 4.74e-31 | 114 |
| Msa1131640 | MtrunA17_Chr7g0269671 | 46.667 | 120 | 62 | 2 | 104 | 222 | 126 | 244 | 1.69e-26 | 104 |
| Msa1131640 | MtrunA17_Chr7g0248821 | 53.623 | 69 | 32 | 0 | 154 | 222 | 1 | 69 | 3.55e-17 | 76.6 |
| Msa1131640 | MtrunA17_Chr1g0206511 | 54.286 | 70 | 32 | 0 | 153 | 222 | 1 | 70 | 8.02e-17 | 75.9 |
| Msa1131640 | MtrunA17_Chr3g0100401 | 52.113 | 71 | 32 | 2 | 153 | 222 | 1 | 70 | 2.22e-16 | 72.8 |
| Msa1131640 | MtrunA17_Chr1g0206501 | 32.609 | 138 | 85 | 2 | 1 | 130 | 122 | 259 | 4.94e-16 | 76.3 |
| Msa1131640 | MtrunA17_Chr7g0269661 | 32.540 | 126 | 85 | 0 | 1 | 126 | 33 | 158 | 9.86e-13 | 65.1 |
| Msa1131640 | MtrunA17_Chr1g0173681 | 42.254 | 71 | 41 | 0 | 1 | 71 | 265 | 335 | 1.04e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1131640 | AT3G51690.1 | 40.336 | 119 | 67 | 2 | 104 | 222 | 88 | 202 | 1.37e-19 | 85.9 |
| Msa1131640 | AT3G51700.1 | 38.938 | 113 | 68 | 1 | 104 | 216 | 89 | 200 | 4.09e-18 | 82.0 |
| Msa1131640 | AT5G28780.1 | 38.182 | 110 | 64 | 2 | 115 | 222 | 97 | 204 | 3.42e-15 | 73.6 |
Find 39 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTTGCTTCTCTTAC+AGG | 0.168521 | 7_3:-84192637 | Msa1131640:intron |
| AGATTTCTTAACAACATTAT+TGG | 0.221249 | 7_3:+84191444 | None:intergenic |
| TGAAGGCAATTTAGAAATTC+TGG | 0.223053 | 7_3:+84191513 | None:intergenic |
| TATATTAGCTTCAACAATTC+AGG | 0.244967 | 7_3:-84191729 | Msa1131640:CDS |
| AGTTGCTTCACCGCGATCTA+TGG | 0.281966 | 7_3:+84191563 | None:intergenic |
| AAAATTTGTTCTTGAACAAT+AGG | 0.292476 | 7_3:+84192664 | None:intergenic |
| ATGGAGAATTCTTGAGGAAT+AGG | 0.307309 | 7_3:-84191754 | Msa1131640:CDS |
| CTAAATTGCCTTCAAACGTC+TGG | 0.336659 | 7_3:-84191504 | Msa1131640:CDS |
| TGGATAGGCCTAATCATGTT+TGG | 0.353529 | 7_3:-84193007 | Msa1131640:CDS |
| TTGAGCTTGATAGTATGATT+AGG | 0.386178 | 7_3:+84191477 | None:intergenic |
| GGTTATGTTGCTGATTTCTT+CGG | 0.388583 | 7_3:-84192721 | Msa1131640:CDS |
| TGGAGAATTCTTGAGGAATA+GGG | 0.422054 | 7_3:-84191753 | Msa1131640:CDS |
| GGATAGGCCTAATCATGTTT+GGG | 0.424172 | 7_3:-84193006 | Msa1131640:CDS |
| GCTTGGACGATTGCAGCAAT+AGG | 0.447314 | 7_3:+84191809 | None:intergenic |
| ATAAATTTGGATATGTAGCT+TGG | 0.452666 | 7_3:+84191792 | None:intergenic |
| AAATCAGCAACATAACCATT+TGG | 0.456921 | 7_3:+84192727 | None:intergenic |
| CATACTATCAAGCTCAAAGT+TGG | 0.460185 | 7_3:-84191471 | Msa1131640:CDS |
| AACACTTGCAATCTAACAAA+AGG | 0.468910 | 7_3:-84192780 | Msa1131640:CDS |
| CATGCTACTGTCTCAATCAA+TGG | 0.470323 | 7_3:-84193027 | Msa1131640:CDS |
| TAGGCAACCCAGACGTTTGA+AGG | 0.478685 | 7_3:+84191496 | None:intergenic |
| TCATGGAAGTTCCTCTCTGA+TGG | 0.479207 | 7_3:-84192978 | Msa1131640:CDS |
| TTCAAAATGGAGAATTCTTG+AGG | 0.486826 | 7_3:-84191760 | Msa1131640:CDS |
| TAATTGTGCAGGAGAAGAAA+AGG | 0.495174 | 7_3:-84191604 | Msa1131640:intron |
| TATTGTAGCTTTAATTCTAA+CGG | 0.497576 | 7_3:-84192842 | Msa1131640:intron |
| ATCATGTTTGGGAAAACTCA+TGG | 0.501729 | 7_3:-84192995 | Msa1131640:CDS |
| AGCTTTAATTCTAACGGATG+AGG | 0.502130 | 7_3:-84192836 | Msa1131640:CDS |
| ATGGAATTCTTTATGATCAA+AGG | 0.507330 | 7_3:-84192959 | Msa1131640:CDS |
| TAAATTGCCTTCAAACGTCT+GGG | 0.508177 | 7_3:-84191503 | Msa1131640:CDS |
| AAATGCATGCCGTATCCAAA+TGG | 0.527092 | 7_3:-84192742 | Msa1131640:CDS |
| AGGAGGCTCACACGAAATCC+AGG | 0.529108 | 7_3:-84192939 | Msa1131640:intron |
| ACAGATTAATACATGATGAA+AGG | 0.569383 | 7_3:-84192696 | Msa1131640:CDS |
| TACTGTCTCAATCAATGGAT+AGG | 0.594802 | 7_3:-84193022 | Msa1131640:CDS |
| CATTACATAAGCCCTCAGCT+TGG | 0.598858 | 7_3:+84191418 | None:intergenic |
| GCAACATAACCATTTGGATA+CGG | 0.603860 | 7_3:+84192733 | None:intergenic |
| GAATTCTTTATGATCAAAGG+AGG | 0.629297 | 7_3:-84192956 | Msa1131640:CDS |
| AGTTCAAATTCCATAGATCG+CGG | 0.665211 | 7_3:-84191573 | Msa1131640:CDS |
| AGAAATCTAGACCAAGCTGA+GGG | 0.666049 | 7_3:-84191429 | Msa1131640:CDS |
| CATAAAGAATTCCATCAGAG+AGG | 0.668846 | 7_3:+84192967 | None:intergenic |
| AAGAAATCTAGACCAAGCTG+AGG | 0.674713 | 7_3:-84191430 | Msa1131640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr7_3:84192675-84192694 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr7_3:84192678-84192697 | Msa1131640:CDS | 15.0% |
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr7_3:84192675-84192694 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr7_3:84192678-84192697 | Msa1131640:CDS | 15.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr7_3:84191600-84191619 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr7_3:84191609-84191628 | Msa1131640:intron | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr7_3:84191790-84191809 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr7_3:84191942-84191961 | Msa1131640:intron | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr7_3:84192321-84192340 | Msa1131640:intron | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr7_3:84193010-84193029 | None:intergenic | 20.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr7_3:84191600-84191619 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr7_3:84191609-84191628 | Msa1131640:intron | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr7_3:84191790-84191809 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr7_3:84191942-84191961 | Msa1131640:intron | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr7_3:84192321-84192340 | Msa1131640:intron | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr7_3:84193010-84193029 | None:intergenic | 20.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr7_3:84191492-84191511 | Msa1131640:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr7_3:84191755-84191774 | Msa1131640:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr7_3:84192023-84192042 | Msa1131640:intron | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr7_3:84192220-84192239 | Msa1131640:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr7_3:84192221-84192240 | Msa1131640:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr7_3:84192431-84192450 | Msa1131640:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr7_3:84192481-84192500 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr7_3:84192480-84192499 | Msa1131640:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr7_3:84192523-84192542 | Msa1131640:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr7_3:84192581-84192600 | Msa1131640:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr7_3:84192662-84192681 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr7_3:84192722-84192741 | Msa1131640:CDS | 25.0% |
| ! | ATATCGATAAGTATATTACC+TGG | + | chr7_3:84192786-84192805 | None:intergenic | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr7_3:84192836-84192855 | Msa1131640:CDS | 25.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr7_3:84191492-84191511 | Msa1131640:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr7_3:84191755-84191774 | Msa1131640:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr7_3:84192023-84192042 | Msa1131640:intron | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr7_3:84192220-84192239 | Msa1131640:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr7_3:84192221-84192240 | Msa1131640:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr7_3:84192431-84192450 | Msa1131640:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr7_3:84192481-84192500 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr7_3:84192480-84192499 | Msa1131640:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr7_3:84192523-84192542 | Msa1131640:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr7_3:84192581-84192600 | Msa1131640:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr7_3:84192662-84192681 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr7_3:84192722-84192741 | Msa1131640:CDS | 25.0% |
| ! | ATATCGATAAGTATATTACC+TGG | + | chr7_3:84192786-84192805 | None:intergenic | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr7_3:84192836-84192855 | Msa1131640:CDS | 25.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr7_3:84191495-84191514 | Msa1131640:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr7_3:84191533-84191552 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr7_3:84191671-84191690 | Msa1131640:intron | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr7_3:84191727-84191746 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr7_3:84191917-84191936 | Msa1131640:intron | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr7_3:84191918-84191937 | Msa1131640:intron | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr7_3:84191919-84191938 | Msa1131640:intron | 30.0% | |
| ATTGCTTCTTTATTACTACC+AGG | - | chr7_3:84192099-84192118 | Msa1131640:intron | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr7_3:84192227-84192246 | Msa1131640:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr7_3:84192295-84192314 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr7_3:84192294-84192313 | Msa1131640:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr7_3:84192327-84192346 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr7_3:84192324-84192343 | Msa1131640:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr7_3:84192425-84192444 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr7_3:84192430-84192449 | Msa1131640:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr7_3:84192458-84192477 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr7_3:84192532-84192551 | Msa1131640:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr7_3:84192533-84192552 | Msa1131640:intron | 30.0% |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr7_3:84192691-84192710 | Msa1131640:CDS | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr7_3:84192765-84192784 | Msa1131640:CDS | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr7_3:84192941-84192960 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr7_3:84192977-84192996 | None:intergenic | 30.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr7_3:84191495-84191514 | Msa1131640:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr7_3:84191533-84191552 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr7_3:84191671-84191690 | Msa1131640:intron | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr7_3:84191727-84191746 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr7_3:84191917-84191936 | Msa1131640:intron | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr7_3:84191918-84191937 | Msa1131640:intron | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr7_3:84191919-84191938 | Msa1131640:intron | 30.0% | |
| ATTGCTTCTTTATTACTACC+AGG | - | chr7_3:84192099-84192118 | Msa1131640:intron | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr7_3:84192227-84192246 | Msa1131640:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr7_3:84192295-84192314 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr7_3:84192294-84192313 | Msa1131640:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr7_3:84192327-84192346 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr7_3:84192324-84192343 | Msa1131640:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr7_3:84192425-84192444 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr7_3:84192430-84192449 | Msa1131640:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr7_3:84192458-84192477 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr7_3:84192532-84192551 | Msa1131640:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr7_3:84192533-84192552 | Msa1131640:intron | 30.0% |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr7_3:84192691-84192710 | Msa1131640:CDS | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr7_3:84192765-84192784 | Msa1131640:CDS | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr7_3:84192941-84192960 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr7_3:84192977-84192996 | None:intergenic | 30.0% |
| TACTGTCTCAATCAATGGAT+AGG | - | chr7_3:84191429-84191448 | Msa1131640:CDS | 35.0% | |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr7_3:84191455-84191474 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr7_3:84191456-84191475 | Msa1131640:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr7_3:84191487-84191506 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr7_3:84191615-84191634 | Msa1131640:intron | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr7_3:84191721-84191740 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr7_3:84191730-84191749 | Msa1131640:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr7_3:84191814-84191833 | Msa1131640:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr7_3:84191988-84192007 | Msa1131640:intron | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr7_3:84191991-84192010 | Msa1131640:intron | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr7_3:84192013-84192032 | Msa1131640:intron | 35.0% | |
| TCGATCTGCAACATAGAAAA+AGG | - | chr7_3:84192174-84192193 | Msa1131640:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr7_3:84192255-84192274 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr7_3:84192342-84192361 | Msa1131640:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr7_3:84192345-84192364 | Msa1131640:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr7_3:84192567-84192586 | Msa1131640:intron | 35.0% | |
| CAGTTATCAAAAGCTCAGAT+GGG | + | chr7_3:84192611-84192630 | None:intergenic | 35.0% | |
| TCAGTTATCAAAAGCTCAGA+TGG | + | chr7_3:84192612-84192631 | None:intergenic | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr7_3:84192697-84192716 | Msa1131640:CDS | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr7_3:84192698-84192717 | Msa1131640:CDS | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr7_3:84192847-84192866 | Msa1131640:intron | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr7_3:84192878-84192897 | Msa1131640:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr7_3:84192948-84192967 | Msa1131640:CDS | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr7_3:84192980-84192999 | Msa1131640:CDS | 35.0% | |
| TACTGTCTCAATCAATGGAT+AGG | - | chr7_3:84191429-84191448 | Msa1131640:CDS | 35.0% | |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr7_3:84191455-84191474 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr7_3:84191456-84191475 | Msa1131640:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr7_3:84191487-84191506 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr7_3:84191615-84191634 | Msa1131640:intron | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr7_3:84191721-84191740 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr7_3:84191730-84191749 | Msa1131640:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr7_3:84191814-84191833 | Msa1131640:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr7_3:84191988-84192007 | Msa1131640:intron | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr7_3:84191991-84192010 | Msa1131640:intron | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr7_3:84192013-84192032 | Msa1131640:intron | 35.0% | |
| TCGATCTGCAACATAGAAAA+AGG | - | chr7_3:84192174-84192193 | Msa1131640:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr7_3:84192255-84192274 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr7_3:84192342-84192361 | Msa1131640:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr7_3:84192345-84192364 | Msa1131640:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr7_3:84192567-84192586 | Msa1131640:intron | 35.0% | |
| CAGTTATCAAAAGCTCAGAT+GGG | + | chr7_3:84192611-84192630 | None:intergenic | 35.0% | |
| TCAGTTATCAAAAGCTCAGA+TGG | + | chr7_3:84192612-84192631 | None:intergenic | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr7_3:84192697-84192716 | Msa1131640:CDS | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr7_3:84192698-84192717 | Msa1131640:CDS | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr7_3:84192847-84192866 | Msa1131640:intron | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr7_3:84192878-84192897 | Msa1131640:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr7_3:84192948-84192967 | Msa1131640:CDS | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr7_3:84192980-84192999 | Msa1131640:CDS | 35.0% | |
| TGGATAGGCCTAATCATGTT+TGG | - | chr7_3:84191444-84191463 | Msa1131640:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr7_3:84191445-84191464 | Msa1131640:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr7_3:84191709-84191728 | Msa1131640:CDS | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr7_3:84191948-84191967 | Msa1131640:intron | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr7_3:84191998-84192017 | Msa1131640:intron | 40.0% | |
| GCTTCTTTATTACTACCAGG+TGG | - | chr7_3:84192102-84192121 | Msa1131640:intron | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr7_3:84192297-84192316 | Msa1131640:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr7_3:84192399-84192418 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr7_3:84192537-84192556 | Msa1131640:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr7_3:84192538-84192557 | Msa1131640:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr7_3:84192557-84192576 | Msa1131640:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr7_3:84192558-84192577 | Msa1131640:intron | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr7_3:84192947-84192966 | Msa1131640:CDS | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr7_3:84193021-84193040 | Msa1131640:CDS | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr7_3:84193022-84193041 | Msa1131640:CDS | 40.0% | |
| TGGATAGGCCTAATCATGTT+TGG | - | chr7_3:84191444-84191463 | Msa1131640:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr7_3:84191445-84191464 | Msa1131640:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr7_3:84191709-84191728 | Msa1131640:CDS | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr7_3:84191948-84191967 | Msa1131640:intron | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr7_3:84191998-84192017 | Msa1131640:intron | 40.0% | |
| GCTTCTTTATTACTACCAGG+TGG | - | chr7_3:84192102-84192121 | Msa1131640:intron | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr7_3:84192297-84192316 | Msa1131640:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr7_3:84192399-84192418 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr7_3:84192537-84192556 | Msa1131640:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr7_3:84192538-84192557 | Msa1131640:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr7_3:84192557-84192576 | Msa1131640:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr7_3:84192558-84192577 | Msa1131640:intron | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr7_3:84192947-84192966 | Msa1131640:CDS | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr7_3:84193021-84193040 | Msa1131640:CDS | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr7_3:84193022-84193041 | Msa1131640:CDS | 40.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr7_3:84191473-84191492 | Msa1131640:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr7_3:84191982-84192001 | Msa1131640:intron | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr7_3:84191999-84192018 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr7_3:84191997-84192016 | Msa1131640:intron | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr7_3:84192075-84192094 | Msa1131640:intron | 45.0% | |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr7_3:84192156-84192175 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr7_3:84192162-84192181 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr7_3:84192442-84192461 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr7_3:84192543-84192562 | Msa1131640:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr7_3:84192552-84192571 | Msa1131640:intron | 45.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr7_3:84191473-84191492 | Msa1131640:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr7_3:84191982-84192001 | Msa1131640:intron | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr7_3:84191999-84192018 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr7_3:84191997-84192016 | Msa1131640:intron | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr7_3:84192075-84192094 | Msa1131640:intron | 45.0% | |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr7_3:84192156-84192175 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr7_3:84192162-84192181 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr7_3:84192442-84192461 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr7_3:84192543-84192562 | Msa1131640:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr7_3:84192552-84192571 | Msa1131640:intron | 45.0% | |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr7_3:84191961-84191980 | Msa1131640:intron | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr7_3:84192120-84192139 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr7_3:84192236-84192255 | Msa1131640:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr7_3:84192378-84192397 | Msa1131640:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr7_3:84192390-84192409 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr7_3:84192645-84192664 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr7_3:84192891-84192910 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr7_3:84192958-84192977 | None:intergenic | 50.0% | |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr7_3:84191961-84191980 | Msa1131640:intron | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr7_3:84192120-84192139 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr7_3:84192236-84192255 | Msa1131640:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr7_3:84192378-84192397 | Msa1131640:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr7_3:84192390-84192409 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr7_3:84192645-84192664 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr7_3:84192891-84192910 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr7_3:84192958-84192977 | None:intergenic | 50.0% | |
| AGGAGGCTCACACGAAATCC+AGG | - | chr7_3:84191512-84191531 | Msa1131640:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr7_3:84191964-84191983 | Msa1131640:intron | 55.0% | |
| AGGAGGCTCACACGAAATCC+AGG | - | chr7_3:84191512-84191531 | Msa1131640:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr7_3:84191964-84191983 | Msa1131640:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 84191425 | 84193048 | 84191425 | ID=Msa1131640;Name=Msa1131640 |
| chr7_3 | mRNA | 84191425 | 84193048 | 84191425 | ID=Msa1131640-mRNA-1;Parent=Msa1131640;Name=Msa1131640-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|0.5|4|0|222 |
| chr7_3 | exon | 84192940 | 84193048 | 84192940 | ID=Msa1131640-mRNA-1:exon:25112;Parent=Msa1131640-mRNA-1 |
| chr7_3 | exon | 84192638 | 84192856 | 84192638 | ID=Msa1131640-mRNA-1:exon:25111;Parent=Msa1131640-mRNA-1 |
| chr7_3 | exon | 84191687 | 84191833 | 84191687 | ID=Msa1131640-mRNA-1:exon:25110;Parent=Msa1131640-mRNA-1 |
| chr7_3 | exon | 84191425 | 84191615 | 84191425 | ID=Msa1131640-mRNA-1:exon:25109;Parent=Msa1131640-mRNA-1 |
| chr7_3 | CDS | 84192940 | 84193048 | 84192940 | ID=Msa1131640-mRNA-1:cds;Parent=Msa1131640-mRNA-1 |
| chr7_3 | CDS | 84192638 | 84192856 | 84192638 | ID=Msa1131640-mRNA-1:cds;Parent=Msa1131640-mRNA-1 |
| chr7_3 | CDS | 84191687 | 84191833 | 84191687 | ID=Msa1131640-mRNA-1:cds;Parent=Msa1131640-mRNA-1 |
| chr7_3 | CDS | 84191425 | 84191615 | 84191425 | ID=Msa1131640-mRNA-1:cds;Parent=Msa1131640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
