Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872030 | KEH22305.1 | 73.430 | 207 | 55 | 0 | 229 | 435 | 25 | 231 | 1.85e-104 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872030 | A0A072U901 | 73.430 | 207 | 55 | 0 | 229 | 435 | 25 | 231 | 8.85e-105 | 321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0813470 | Msa0872030 | 0.942993 | 2.676870e-102 | -8.615850e-47 |
| Msa0872030 | Msa1075690 | 0.878905 | 1.923355e-69 | -8.615850e-47 |
| Msa0872030 | Msa1131640 | 0.919065 | 7.167633e-87 | -8.615850e-47 |
| Msa0872030 | Msa1131730 | 0.879951 | 8.188357e-70 | -8.615850e-47 |
| Msa0872030 | Msa1237120 | 0.810151 | 1.329563e-50 | -8.615850e-47 |
| Msa0872030 | Msa1242860 | 0.952416 | 2.539154e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872030 | MtrunA17_Chr3g0101861 | 67.200 | 125 | 41 | 0 | 104 | 228 | 219 | 343 | 8.68e-50 | 176 |
| Msa0872030 | MtrunA17_Chr4g0044671 | 35.111 | 225 | 117 | 1 | 230 | 454 | 25 | 220 | 5.93e-37 | 135 |
| Msa0872030 | MtrunA17_Chr4g0034781 | 34.802 | 227 | 119 | 1 | 228 | 454 | 17 | 214 | 6.66e-37 | 135 |
| Msa0872030 | MtrunA17_Chr1g0173691 | 52.381 | 126 | 60 | 0 | 104 | 229 | 125 | 250 | 2.68e-36 | 137 |
| Msa0872030 | MtrunA17_Chr3g0133361 | 42.953 | 149 | 82 | 2 | 81 | 228 | 25 | 171 | 1.21e-35 | 134 |
| Msa0872030 | MtrunA17_Chr1g0172351 | 44.586 | 157 | 84 | 2 | 301 | 455 | 1 | 156 | 8.86e-35 | 127 |
| Msa0872030 | MtrunA17_Chr6g0472831 | 48.305 | 118 | 61 | 0 | 112 | 229 | 55 | 172 | 2.30e-33 | 126 |
| Msa0872030 | MtrunA17_Chr3g0101871 | 64.516 | 93 | 33 | 0 | 1 | 93 | 1008 | 1100 | 1.08e-32 | 132 |
| Msa0872030 | MtrunA17_Chr1g0175581 | 44.961 | 129 | 42 | 1 | 314 | 442 | 7 | 106 | 1.52e-30 | 114 |
| Msa0872030 | MtrunA17_Chr7g0269671 | 49.206 | 126 | 62 | 2 | 104 | 228 | 126 | 250 | 2.47e-29 | 117 |
| Msa0872030 | MtrunA17_Chr7g0248821 | 57.333 | 75 | 32 | 0 | 154 | 228 | 1 | 75 | 5.02e-21 | 90.9 |
| Msa0872030 | MtrunA17_Chr3g0100401 | 55.000 | 80 | 28 | 2 | 153 | 228 | 1 | 76 | 6.02e-21 | 88.6 |
| Msa0872030 | MtrunA17_Chr1g0206511 | 57.895 | 76 | 32 | 0 | 153 | 228 | 1 | 76 | 1.07e-20 | 90.1 |
| Msa0872030 | MtrunA17_Chr1g0206501 | 33.588 | 131 | 79 | 2 | 1 | 123 | 122 | 252 | 6.15e-15 | 77.0 |
| Msa0872030 | MtrunA17_Chr1g0173681 | 42.254 | 71 | 41 | 0 | 1 | 71 | 265 | 335 | 4.85e-12 | 67.0 |
| Msa0872030 | MtrunA17_Chr7g0269661 | 32.540 | 126 | 85 | 0 | 1 | 126 | 33 | 158 | 5.14e-12 | 65.5 |
| Msa0872030 | MtrunA17_Chr2g0283571 | 28.859 | 149 | 77 | 1 | 306 | 454 | 1 | 120 | 1.49e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872030 | AT3G51690.1 | 41.600 | 125 | 69 | 2 | 104 | 228 | 88 | 208 | 3.06e-20 | 92.0 |
| Msa0872030 | AT5G28780.1 | 41.379 | 116 | 64 | 2 | 115 | 228 | 97 | 210 | 1.79e-18 | 87.0 |
| Msa0872030 | AT3G51700.1 | 39.200 | 125 | 75 | 1 | 104 | 228 | 89 | 212 | 6.14e-18 | 85.5 |
Find 68 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTTGCTTCTCTTAC+AGG | 0.168521 | 6_1:-7380368 | Msa0872030:intron |
| AATAGAACCTCAACATTATC+AGG | 0.206763 | 6_1:+7373937 | None:intergenic |
| AGATTTCTTAACAACATTAT+TGG | 0.221249 | 6_1:+7379175 | None:intergenic |
| TGAAGGCAATTTAGAAATTC+TGG | 0.223053 | 6_1:+7379244 | None:intergenic |
| TATATTAGCTTCAACAATTC+AGG | 0.244967 | 6_1:-7379460 | Msa0872030:CDS |
| AGTTGCTTCACCGCGATCTA+TGG | 0.281966 | 6_1:+7379294 | None:intergenic |
| AAAATTTGTTCTTGAACAAT+AGG | 0.292476 | 6_1:+7380395 | None:intergenic |
| CTACTCAGCTAGGCATTAAC+TGG | 0.294540 | 6_1:-7373549 | Msa0872030:CDS |
| TAGTTAGGTTGTGATCATTT+AGG | 0.301080 | 6_1:+7373569 | None:intergenic |
| AATTTAGTATACTAATAAAA+AGG | 0.301757 | 6_1:+7373731 | None:intergenic |
| ATGGAGAATTCTTGAGGAAT+AGG | 0.307309 | 6_1:-7379485 | Msa0872030:CDS |
| TGACTTCATCAATCCTTTCA+TGG | 0.315924 | 6_1:-7373779 | Msa0872030:CDS |
| GTACAAATTGTGTCCATAAT+AGG | 0.317568 | 6_1:+7373912 | None:intergenic |
| GAGGTTCTATTTGCCTATTA+TGG | 0.327280 | 6_1:-7373925 | Msa0872030:CDS |
| CTAAATTGCCTTCAAACGTC+TGG | 0.336659 | 6_1:-7379235 | Msa0872030:CDS |
| GCCATGTTTATAAAGCAGTA+TGG | 0.338893 | 6_1:-7373652 | Msa0872030:CDS |
| TGGATAGGCCTAATCATGTT+TGG | 0.353529 | 6_1:-7380738 | Msa0872030:CDS |
| TGTTCATCCTATCTTAACTA+AGG | 0.365501 | 6_1:-7373992 | Msa0872030:CDS |
| TGAGATTAGATTAAAAGATT+AGG | 0.380226 | 6_1:+7373412 | None:intergenic |
| TTGAGCTTGATAGTATGATT+AGG | 0.386178 | 6_1:+7379208 | None:intergenic |
| GGTTATGTTGCTGATTTCTT+CGG | 0.388583 | 6_1:-7380452 | Msa0872030:CDS |
| ATTCAGAATTTAACACTTTG+TGG | 0.393387 | 6_1:-7373628 | Msa0872030:CDS |
| CACATGACACTTGCTTAAAT+CGG | 0.394146 | 6_1:+7373462 | None:intergenic |
| TCACTGAACTACAAGATTCC+TGG | 0.409654 | 6_1:-7374068 | Msa0872030:CDS |
| TAATGCCTAGCTGAGTAGTT+AGG | 0.416902 | 6_1:+7373554 | None:intergenic |
| TGGAGAATTCTTGAGGAATA+GGG | 0.422054 | 6_1:-7379484 | Msa0872030:CDS |
| GGATAGGCCTAATCATGTTT+GGG | 0.424172 | 6_1:-7380737 | Msa0872030:CDS |
| GCTTGGACGATTGCAGCAAT+AGG | 0.447314 | 6_1:+7379540 | None:intergenic |
| TTAACACTTTGTGGAGATAA+CGG | 0.450081 | 6_1:-7373619 | Msa0872030:CDS |
| ATAAATTTGGATATGTAGCT+TGG | 0.452666 | 6_1:+7379523 | None:intergenic |
| AAATCAGCAACATAACCATT+TGG | 0.456921 | 6_1:+7380458 | None:intergenic |
| CATACTATCAAGCTCAAAGT+TGG | 0.460185 | 6_1:-7379202 | Msa0872030:CDS |
| AACACTTGCAATCTAACAAA+AGG | 0.468910 | 6_1:-7380511 | Msa0872030:CDS |
| CATGCTACTGTCTCAATCAA+TGG | 0.470323 | 6_1:-7380758 | Msa0872030:CDS |
| TAGGCAACCCAGACGTTTGA+AGG | 0.478685 | 6_1:+7379227 | None:intergenic |
| TCATGGAAGTTCCTCTCTGA+TGG | 0.479207 | 6_1:-7380709 | Msa0872030:CDS |
| TTCAAAATGGAGAATTCTTG+AGG | 0.486826 | 6_1:-7379491 | Msa0872030:CDS |
| TAATTGTGCAGGAGAAGAAA+AGG | 0.495174 | 6_1:-7379335 | Msa0872030:intron |
| TATTGTAGCTTTAATTCTAA+CGG | 0.497576 | 6_1:-7380573 | Msa0872030:intron |
| ATCATGTTTGGGAAAACTCA+TGG | 0.501729 | 6_1:-7380726 | Msa0872030:CDS |
| AGCTTTAATTCTAACGGATG+AGG | 0.502130 | 6_1:-7380567 | Msa0872030:CDS |
| CAAGCTGAGGGCTTATGTAA+TGG | 0.502481 | 6_1:-7379148 | Msa0872030:CDS |
| ATGGAATTCTTTATGATCAA+AGG | 0.507330 | 6_1:-7380690 | Msa0872030:CDS |
| TAAATTGCCTTCAAACGTCT+GGG | 0.508177 | 6_1:-7379234 | Msa0872030:CDS |
| AATGCTATGTTAACCATGAA+AGG | 0.517503 | 6_1:+7373766 | None:intergenic |
| GACCATCCCTTAGTTAAGAT+AGG | 0.522059 | 6_1:+7373985 | None:intergenic |
| AAATGCATGCCGTATCCAAA+TGG | 0.527092 | 6_1:-7380473 | Msa0872030:CDS |
| AGGAGGCTCACACGAAATCC+AGG | 0.529108 | 6_1:-7380670 | Msa0872030:intron |
| GTTCATCCTATCTTAACTAA+GGG | 0.536253 | 6_1:-7373991 | Msa0872030:CDS |
| ACTATGGAATGGAGGAATGC+AGG | 0.557245 | 6_1:+7373855 | None:intergenic |
| TCCATACTGCTTTATAAACA+TGG | 0.567198 | 6_1:+7373651 | None:intergenic |
| ACAGATTAATACATGATGAA+AGG | 0.569383 | 6_1:-7380427 | Msa0872030:CDS |
| TGATTTCCCTGATAATGTTG+AGG | 0.569518 | 6_1:-7373944 | Msa0872030:CDS |
| ATCCTATCTTAACTAAGGGA+TGG | 0.592007 | 6_1:-7373987 | Msa0872030:CDS |
| TACTGTCTCAATCAATGGAT+AGG | 0.594802 | 6_1:-7380753 | Msa0872030:CDS |
| CATTACATAAGCCCTCAGCT+TGG | 0.598858 | 6_1:+7379149 | None:intergenic |
| GCAACATAACCATTTGGATA+CGG | 0.603860 | 6_1:+7380464 | None:intergenic |
| TCAAAGTGAATTGTATGTAG+AGG | 0.608664 | 6_1:+7373820 | None:intergenic |
| GAATTCTTTATGATCAAAGG+AGG | 0.629297 | 6_1:-7380687 | Msa0872030:CDS |
| TACTCAGCTAGGCATTAACT+GGG | 0.629803 | 6_1:-7373548 | Msa0872030:CDS |
| ATAGAACCTCAACATTATCA+GGG | 0.630087 | 6_1:+7373938 | None:intergenic |
| TTGCTGCGACTATGGAATGG+AGG | 0.634520 | 6_1:+7373847 | None:intergenic |
| CACAACCTAACTACTCAGCT+AGG | 0.641454 | 6_1:-7373559 | Msa0872030:CDS |
| AGTTCAAATTCCATAGATCG+CGG | 0.665211 | 6_1:-7379304 | Msa0872030:CDS |
| AGAAATCTAGACCAAGCTGA+GGG | 0.666049 | 6_1:-7379160 | Msa0872030:CDS |
| CATAAAGAATTCCATCAGAG+AGG | 0.668846 | 6_1:+7380698 | None:intergenic |
| AAGAAATCTAGACCAAGCTG+AGG | 0.674713 | 6_1:-7379161 | Msa0872030:CDS |
| ACTGTGATTAATGATATACC+AGG | 0.720843 | 6_1:+7374050 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATTATTCATACAA+AGG | + | chr6_1:7376341-7376360 | None:intergenic | 10.0% |
| !! | TATATTGTATTGAAAAAAAA+AGG | + | chr6_1:7376974-7376993 | None:intergenic | 10.0% |
| !!! | AATTTTATAACAGATTTAAA+TGG | + | chr6_1:7377476-7377495 | None:intergenic | 10.0% |
| !! | AAAAAGGTTAAAAAAAAAAT+TGG | - | chr6_1:7378378-7378397 | Msa0872030:intron | 10.0% |
| !! | TTAATAAAATTGATCATATA+TGG | + | chr6_1:7378832-7378851 | None:intergenic | 10.0% |
| !!! | TTATTTTGTATATAATTATG+TGG | + | chr6_1:7379518-7379537 | None:intergenic | 10.0% |
| !! | AATTTAGTATACTAATAAAA+AGG | + | chr6_1:7380446-7380465 | None:intergenic | 10.0% |
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr6_1:7374667-7374686 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr6_1:7374670-7374689 | Msa0872030:intron | 15.0% |
| !! | AAAAATTTAAATGTCTACAA+AGG | - | chr6_1:7375484-7375503 | Msa0872030:intron | 15.0% |
| !! | AGATGTTAAAATAATACATT+AGG | + | chr6_1:7376423-7376442 | None:intergenic | 15.0% |
| !!! | TAAAAATCTGTTCTTTTTTA+TGG | + | chr6_1:7376790-7376809 | None:intergenic | 15.0% |
| !!! | TAAAATTAGATTCCTTTTTA+TGG | + | chr6_1:7377098-7377117 | None:intergenic | 15.0% |
| !!! | AAAAAGGAATCTAATTTTAT+TGG | - | chr6_1:7377099-7377118 | Msa0872030:intron | 15.0% |
| !! | TCTTTAAATAGATACTAAAA+AGG | - | chr6_1:7378362-7378381 | Msa0872030:intron | 15.0% |
| !! | CTGCAAAAAAAATTAATTAT+AGG | + | chr6_1:7379056-7379075 | None:intergenic | 15.0% |
| !!! | GATCTTTATAACATTTTTAT+TGG | + | chr6_1:7379810-7379829 | None:intergenic | 15.0% |
| !! | TGTTGTTAAATTATTAATAC+AGG | - | chr6_1:7379941-7379960 | Msa0872030:intron | 15.0% |
| !! | ATTGAAATTAAAATCAACAT+AGG | + | chr6_1:7380043-7380062 | None:intergenic | 15.0% |
| !!! | TGTTGATTTTAATTTCAATT+AGG | - | chr6_1:7380044-7380063 | Msa0872030:intron | 15.0% |
| !!! | AAATATTTTTGAACAAATCT+TGG | + | chr6_1:7380087-7380106 | None:intergenic | 15.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr6_1:7373592-7373611 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr6_1:7373601-7373620 | Msa0872030:CDS | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr6_1:7373782-7373801 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr6_1:7373934-7373953 | Msa0872030:CDS | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr6_1:7374313-7374332 | Msa0872030:intron | 20.0% |
| !! | ATATTGATAAGTATATTACC+TGG | + | chr6_1:7374778-7374797 | None:intergenic | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr6_1:7375002-7375021 | None:intergenic | 20.0% |
| !! | ATTATAACTGGAAAGAATAT+TGG | - | chr6_1:7375098-7375117 | Msa0872030:intron | 20.0% |
| !!! | GACATTTAAATTTTTATGTC+TGG | + | chr6_1:7375479-7375498 | Msa0872040:CDS | 20.0% |
| !! | TGATAATAACAAAATGACTT+GGG | + | chr6_1:7375553-7375572 | Msa0872040:CDS | 20.0% |
| !!! | TTGATAATAACAAAATGACT+TGG | + | chr6_1:7375554-7375573 | Msa0872040:CDS | 20.0% |
| !!! | GTTTTGAAATATGATTACTA+TGG | - | chr6_1:7375822-7375841 | Msa0872030:intron | 20.0% |
| !! | GATAATAATTAGTGTAACAA+AGG | + | chr6_1:7376098-7376117 | Msa0872050:CDS | 20.0% |
| !!! | CCTTTTAAATTGTAAAAGAA+TGG | + | chr6_1:7376120-7376139 | Msa0872050:CDS | 20.0% |
| !!! | CCATTCTTTTACAATTTAAA+AGG | - | chr6_1:7376117-7376136 | Msa0872030:intron | 20.0% |
| !! | ATAGAAAAAATTCACATGAA+TGG | - | chr6_1:7376592-7376611 | Msa0872030:intron | 20.0% |
| !! | TATATATTGCATTGAAAAGA+AGG | + | chr6_1:7376668-7376687 | None:intergenic | 20.0% |
| !!! | TGAAACAATTTTCCATAAAA+AGG | - | chr6_1:7377083-7377102 | Msa0872030:intron | 20.0% |
| !!! | ATTTTATTGGATGATATTAC+AGG | - | chr6_1:7377112-7377131 | Msa0872030:intron | 20.0% |
| !! | TTCAAACAATTTCTTTATCA+TGG | - | chr6_1:7377232-7377251 | Msa0872030:intron | 20.0% |
| !!! | TGTGAATTTTTTCAATCAAT+TGG | - | chr6_1:7377514-7377533 | Msa0872030:intron | 20.0% |
| !! | CAATTGGATTAAAAATGAAA+AGG | - | chr6_1:7377530-7377549 | Msa0872030:intron | 20.0% |
| !! | GCAATATATTGTAAGAATAA+AGG | + | chr6_1:7377870-7377889 | None:intergenic | 20.0% |
| !!! | TTGATAATGTTGAATGTATA+TGG | + | chr6_1:7378169-7378188 | None:intergenic | 20.0% |
| !! | TTGATGTAGAACTAAAAATA+AGG | - | chr6_1:7378215-7378234 | Msa0872030:intron | 20.0% |
| !! | AATTATTGAACACTATGAAA+TGG | + | chr6_1:7378452-7378471 | None:intergenic | 20.0% |
| !!! | CATATTCTTGTTTCTTATTT+TGG | + | chr6_1:7379181-7379200 | None:intergenic | 20.0% |
| !! | TAACTTTACAATTATGACTA+AGG | + | chr6_1:7379272-7379291 | None:intergenic | 20.0% |
| !! | ATGCACACAAAAAAAATTAA+AGG | - | chr6_1:7379323-7379342 | Msa0872030:CDS | 20.0% |
| !! | ACACAAAAAAAATTAAAGGA+GGG | - | chr6_1:7379327-7379346 | Msa0872030:CDS | 20.0% |
| !! | GTATATAATTATGTGGAATA+AGG | + | chr6_1:7379511-7379530 | None:intergenic | 20.0% |
| !! | TTCTTCATTATTAAAAATGC+AGG | - | chr6_1:7379653-7379672 | Msa0872030:intron | 20.0% |
| !!! | TAAGTGATTTTCATTTGATA+AGG | + | chr6_1:7379699-7379718 | None:intergenic | 20.0% |
| !! | AATAGTAGAACATTATGAAT+GGG | + | chr6_1:7379784-7379803 | None:intergenic | 20.0% |
| !! | AAATAGTAGAACATTATGAA+TGG | + | chr6_1:7379785-7379804 | None:intergenic | 20.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr6_1:7373484-7373503 | Msa0872030:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr6_1:7373747-7373766 | Msa0872030:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr6_1:7374015-7374034 | Msa0872030:CDS | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr6_1:7374212-7374231 | Msa0872030:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr6_1:7374213-7374232 | Msa0872030:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr6_1:7374423-7374442 | Msa0872030:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr6_1:7374473-7374492 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr6_1:7374472-7374491 | Msa0872030:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr6_1:7374515-7374534 | Msa0872030:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr6_1:7374573-7374592 | Msa0872030:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr6_1:7374654-7374673 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr6_1:7374714-7374733 | Msa0872030:intron | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr6_1:7374828-7374847 | Msa0872030:intron | 25.0% |
| ! | ATTCTTTCCAGTTATAATCT+TGG | + | chr6_1:7375096-7375115 | None:intergenic | 25.0% |
| !! | TTTATTGATTGTCATTGCAA+AGG | + | chr6_1:7375216-7375235 | None:intergenic | 25.0% |
| ! | ATGACAATCAATAAATCACA+AGG | - | chr6_1:7375221-7375240 | Msa0872030:intron | 25.0% |
| ! | TACAACAAATGTGGTATTTA+AGG | - | chr6_1:7375385-7375404 | Msa0872030:intron | 25.0% |
| ! | AATATTGTTGCACTTATCAT+TGG | - | chr6_1:7375572-7375591 | Msa0872030:intron | 25.0% |
| !!! | GAGGTATATTCTTTAGTTTT+TGG | - | chr6_1:7375645-7375664 | Msa0872030:intron | 25.0% |
| ! | GATGAAACATAAACAATTGT+TGG | + | chr6_1:7375728-7375747 | None:intergenic | 25.0% |
| ! | ACAATTGTTTATGTTTCATC+AGG | - | chr6_1:7375728-7375747 | Msa0872030:intron | 25.0% |
| ! | TGTAATGTTCTTCAATGTAA+TGG | - | chr6_1:7375868-7375887 | Msa0872030:intron | 25.0% |
| !! | ACTTTTACTGATGTAGTTTT+TGG | - | chr6_1:7376165-7376184 | Msa0872030:intron | 25.0% |
| !! | ATTTAAAACAAAGGAGTCAT+TGG | + | chr6_1:7376232-7376251 | Msa0872050:CDS | 25.0% |
| !!! | AATGACTCCTTTGTTTTAAA+TGG | - | chr6_1:7376231-7376250 | Msa0872030:intron | 25.0% |
| ! | TCAATGCTAATAACAAAAAC+AGG | + | chr6_1:7376298-7376317 | None:intergenic | 25.0% |
| ! | TCTTAAGATTAATCGATGTA+TGG | - | chr6_1:7376367-7376386 | Msa0872030:intron | 25.0% |
| !! | TTTTTCTATCCTAAAAACCA+AGG | + | chr6_1:7376581-7376600 | None:intergenic | 25.0% |
| !!! | TTTTTAATTTTGCAGCAGAA+TGG | - | chr6_1:7376804-7376823 | Msa0872030:intron | 25.0% |
| !! | TTTTTCTATCCTAAAAACCA+TGG | + | chr6_1:7376581-7376600 | None:intergenic | 25.0% |
| ! | ATAGAAAAAATTCACGTGAA+TGG | - | chr6_1:7376898-7376917 | Msa0872030:intron | 25.0% |
| !! | CTGTTAGAAATTTAAGATTC+AGG | - | chr6_1:7377390-7377409 | Msa0872030:intron | 25.0% |
| !! | TTTATTATGTGCAAGTTTTC+AGG | - | chr6_1:7377429-7377448 | Msa0872030:intron | 25.0% |
| ! | TATTCAATATATGAGGATGA+GGG | - | chr6_1:7377558-7377577 | Msa0872030:intron | 25.0% |
| ! | GCATATAGATGAAGTAATAA+TGG | + | chr6_1:7377643-7377662 | None:intergenic | 25.0% |
| ! | TACCTCTACATATATTCAAT+AGG | - | chr6_1:7377894-7377913 | Msa0872030:intron | 25.0% |
| !! | AATGAAAGTTTAAGGTACAT+TGG | + | chr6_1:7378017-7378036 | None:intergenic | 25.0% |
| ! | TACCTTAAACTTTCATTTCT+TGG | - | chr6_1:7378020-7378039 | Msa0872030:intron | 25.0% |
| ! | ATCCAAGAAATGAAAGTTTA+AGG | + | chr6_1:7378025-7378044 | None:intergenic | 25.0% |
| !!! | AGTTGTTCAGAAACTTTTTT+TGG | - | chr6_1:7378122-7378141 | Msa0872030:intron | 25.0% |
| ! | TATTTAAAGACCTTTGAATC+TGG | + | chr6_1:7378352-7378371 | None:intergenic | 25.0% |
| ! | GTGTTCTTTGATTAAATATG+TGG | + | chr6_1:7378554-7378573 | None:intergenic | 25.0% |
| ! | ATTTAATCAAAGAACACAAC+AGG | - | chr6_1:7378557-7378576 | Msa0872030:intron | 25.0% |
| ! | TAATCATAATATCCTAACTC+TGG | + | chr6_1:7378756-7378775 | None:intergenic | 25.0% |
| ! | CACACAAAAAAAATTAAAGG+AGG | - | chr6_1:7379326-7379345 | Msa0872030:CDS | 25.0% |
| ! | TTTGTGTTGTATGTTATTAG+TGG | + | chr6_1:7379607-7379626 | None:intergenic | 25.0% |
| !! | TGATTTTCATTTGATAAGGT+TGG | + | chr6_1:7379695-7379714 | None:intergenic | 25.0% |
| ! | ATATCAAAAATACCACAACA+TGG | - | chr6_1:7379872-7379891 | Msa0872030:intron | 25.0% |
| !! | AAAGCTTTTCTTGCATTTTA+AGG | + | chr6_1:7380163-7380182 | None:intergenic | 25.0% |
| ! | ATTCAGAATTTAACACTTTG+TGG | - | chr6_1:7380546-7380565 | Msa0872030:CDS | 25.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr6_1:7373487-7373506 | Msa0872030:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr6_1:7373525-7373544 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr6_1:7373663-7373682 | Msa0872030:CDS | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr6_1:7373719-7373738 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr6_1:7373909-7373928 | Msa0872030:CDS | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr6_1:7373910-7373929 | Msa0872030:CDS | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr6_1:7373911-7373930 | Msa0872030:CDS | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr6_1:7374219-7374238 | Msa0872030:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr6_1:7374287-7374306 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr6_1:7374286-7374305 | Msa0872030:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr6_1:7374319-7374338 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr6_1:7374316-7374335 | Msa0872030:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr6_1:7374417-7374436 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr6_1:7374422-7374441 | Msa0872030:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr6_1:7374450-7374469 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr6_1:7374524-7374543 | Msa0872030:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr6_1:7374525-7374544 | Msa0872030:intron | 30.0% |
| AAATCAGTTATCAAAAGCTC+AGG | + | chr6_1:7374607-7374626 | None:intergenic | 30.0% | |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr6_1:7374683-7374702 | Msa0872030:intron | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr6_1:7374757-7374776 | Msa0872030:intron | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr6_1:7374933-7374952 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr6_1:7374969-7374988 | None:intergenic | 30.0% |
| TGGAAAGAATATTGGAAACA+AGG | - | chr6_1:7375106-7375125 | Msa0872030:intron | 30.0% | |
| ATTGCAAAGGATACAACAAT+CGG | + | chr6_1:7375203-7375222 | None:intergenic | 30.0% | |
| ATATAAACCAACATGATCCA+AGG | + | chr6_1:7375252-7375271 | Msa0872040:CDS | 30.0% | |
| !! | TGTTGGTTTATATTTGCGAA+AGG | - | chr6_1:7375259-7375278 | Msa0872030:intron | 30.0% |
| AATTATACGTAGCTATATCC+AGG | - | chr6_1:7375300-7375319 | Msa0872030:intron | 30.0% | |
| ATTATACGTAGCTATATCCA+GGG | - | chr6_1:7375301-7375320 | Msa0872030:intron | 30.0% | |
| CATGACAGATCTAATAAGAT+AGG | - | chr6_1:7375356-7375375 | Msa0872030:intron | 30.0% | |
| AGGATATAGTACAACAAATG+TGG | - | chr6_1:7375376-7375395 | Msa0872030:intron | 30.0% | |
| AACAAATGTGGTATTTAAGG+AGG | - | chr6_1:7375388-7375407 | Msa0872030:intron | 30.0% | |
| !!! | TTAGTTTTGTATGACTGCAA+AGG | - | chr6_1:7375524-7375543 | Msa0872030:intron | 30.0% |
| !!! | CACTTATCATTGGTTTTTTG+AGG | - | chr6_1:7375582-7375601 | Msa0872030:intron | 30.0% |
| TCATTAACCCTTTAGCAAAA+GGG | + | chr6_1:7375688-7375707 | None:intergenic | 30.0% | |
| GTTAATGAGTAGAAGAGAAA+GGG | - | chr6_1:7375700-7375719 | Msa0872030:intron | 30.0% | |
| GCAATGCAATAGTAATAGAA+AGG | + | chr6_1:7375757-7375776 | None:intergenic | 30.0% | |
| CTATTACTATTGCATTGCTT+TGG | - | chr6_1:7375759-7375778 | Msa0872030:intron | 30.0% | |
| TATGGCATTTATTCAATCCA+GGG | - | chr6_1:7375840-7375859 | Msa0872030:intron | 30.0% | |
| TACATTGAAGAACATTACAG+AGG | + | chr6_1:7375867-7375886 | None:intergenic | 30.0% | |
| CTTCAATGTAATGGCTTAAT+CGG | - | chr6_1:7375877-7375896 | Msa0872030:intron | 30.0% | |
| !! | TAATGGCTTAATCGGTTTTA+TGG | - | chr6_1:7375885-7375904 | Msa0872030:intron | 30.0% |
| ! | GGATTTTTGAATCTAGCAAT+GGG | + | chr6_1:7376061-7376080 | Msa0872050:CDS | 30.0% |
| ! | AGGATTTTTGAATCTAGCAA+TGG | + | chr6_1:7376062-7376081 | Msa0872050:CDS | 30.0% |
| ! | TGACATGCCATTTAAAACAA+AGG | + | chr6_1:7376241-7376260 | Msa0872050:CDS | 30.0% |
| TTTAAATGGCATGTCACTAT+AGG | - | chr6_1:7376245-7376264 | Msa0872030:intron | 30.0% | |
| AATAATACATTAGGCAGTGA+GGG | + | chr6_1:7376414-7376433 | None:intergenic | 30.0% | |
| AAATAATACATTAGGCAGTG+AGG | + | chr6_1:7376415-7376434 | None:intergenic | 30.0% | |
| ! | CGTAAATGGGAAGTATATTA+CGG | + | chr6_1:7376546-7376565 | None:intergenic | 30.0% |
| !! | TAAAAACCAAGGTGTTGTAA+AGG | + | chr6_1:7376570-7376589 | None:intergenic | 30.0% |
| !! | TTTACAACACCTTGGTTTTT+AGG | - | chr6_1:7376569-7376588 | Msa0872030:intron | 30.0% |
| AAAATTCACATGAATGGCTA+TGG | - | chr6_1:7376598-7376617 | Msa0872030:intron | 30.0% | |
| AAATTCACATGAATGGCTAT+GGG | - | chr6_1:7376599-7376618 | Msa0872030:intron | 30.0% | |
| ! | ACAATAGAAGTACATGCATT+GGG | + | chr6_1:7376698-7376717 | None:intergenic | 30.0% |
| ! | AACAATAGAAGTACATGCAT+TGG | + | chr6_1:7376699-7376718 | None:intergenic | 30.0% |
| ! | CGTAAATGGGAAGTATATTA+TGG | + | chr6_1:7376546-7376565 | None:intergenic | 30.0% |
| !! | TAAAAACCATGGTGTTGTAA+AGG | + | chr6_1:7376876-7376895 | None:intergenic | 30.0% |
| ! | TTTACAACACCATGGTTTTT+AGG | - | chr6_1:7376875-7376894 | Msa0872030:intron | 30.0% |
| ! | GCAATAGAAGTACATGTATT+GGG | + | chr6_1:7377006-7377025 | None:intergenic | 30.0% |
| ! | AGCAATAGAAGTACATGTAT+TGG | + | chr6_1:7377007-7377026 | None:intergenic | 30.0% |
| ! | GTTTCACATAGTAGGAATTT+TGG | + | chr6_1:7377069-7377088 | None:intergenic | 30.0% |
| GGAAAATTGTTTCACATAGT+AGG | + | chr6_1:7377077-7377096 | None:intergenic | 30.0% | |
| CTATAAATATGAGAATTCCC+TGG | - | chr6_1:7377172-7377191 | Msa0872030:intron | 30.0% | |
| ATTATGAGAAGACCAATACT+AGG | - | chr6_1:7377269-7377288 | Msa0872030:intron | 30.0% | |
| TTATGAGAAGACCAATACTA+GGG | - | chr6_1:7377270-7377289 | Msa0872030:intron | 30.0% | |
| ! | ATTGTGTTTTCCACCAAAAT+AGG | + | chr6_1:7377338-7377357 | None:intergenic | 30.0% |
| !!! | TATTTTGGTGGAAAACACAA+TGG | - | chr6_1:7377337-7377356 | Msa0872030:intron | 30.0% |
| !! | GGAAGAGTATTCAATATATG+AGG | - | chr6_1:7377551-7377570 | Msa0872030:intron | 30.0% |
| GTATTCAATATATGAGGATG+AGG | - | chr6_1:7377557-7377576 | Msa0872030:intron | 30.0% | |
| TATAAGGGAAATCATACTTG+TGG | - | chr6_1:7377600-7377619 | Msa0872030:intron | 30.0% | |
| CCTTTAAGCTAAAGACAATT+TGG | + | chr6_1:7377756-7377775 | None:intergenic | 30.0% | |
| ! | CCAAATTGTCTTTAGCTTAA+AGG | - | chr6_1:7377753-7377772 | Msa0872030:intron | 30.0% |
| AGCCTATTGAATATATGTAG+AGG | + | chr6_1:7377899-7377918 | None:intergenic | 30.0% | |
| ! | TATTGATGGTACAACTGTTA+TGG | + | chr6_1:7378245-7378264 | None:intergenic | 30.0% |
| ATAGCAAAACAATACTGAGA+TGG | + | chr6_1:7378305-7378324 | None:intergenic | 30.0% | |
| !! | AGTATTGTTTTGCTATGACT+TGG | - | chr6_1:7378309-7378328 | Msa0872030:intron | 30.0% |
| ! | TATTGCCTCAAAGGAATTTT+TGG | + | chr6_1:7378639-7378658 | None:intergenic | 30.0% |
| !! | GATGCAACTTTAAGATACAT+TGG | + | chr6_1:7378680-7378699 | None:intergenic | 30.0% |
| !!! | AGTTGCTCAGAAACATTTTT+TGG | - | chr6_1:7378785-7378804 | Msa0872030:intron | 30.0% |
| GGACTTATAAGTTAACTCAA+GGG | + | chr6_1:7378931-7378950 | None:intergenic | 30.0% | |
| TGGACTTATAAGTTAACTCA+AGG | + | chr6_1:7378932-7378951 | None:intergenic | 30.0% | |
| !!! | TTGAGATGGAGTTTATTTTG+TGG | + | chr6_1:7378952-7378971 | None:intergenic | 30.0% |
| ATATCGAAATAACGTTGAGA+TGG | + | chr6_1:7378966-7378985 | None:intergenic | 30.0% | |
| CTTTACAATTATGACTAAGG+TGG | + | chr6_1:7379269-7379288 | None:intergenic | 30.0% | |
| CAAGTATATGCTTAGAAGAA+AGG | - | chr6_1:7379367-7379386 | Msa0872030:intron | 30.0% | |
| !!! | ACGCAATTTTTTTTTTGCCA+TGG | + | chr6_1:7379739-7379758 | None:intergenic | 30.0% |
| ATGAATGGGTAAATCAAATG+CGG | + | chr6_1:7379770-7379789 | None:intergenic | 30.0% | |
| ! | GTAGCTAAATTTTGCAATCT+AGG | + | chr6_1:7379834-7379853 | None:intergenic | 30.0% |
| ! | CAACATAGGTTAGTTATGTA+AGG | + | chr6_1:7380029-7380048 | None:intergenic | 30.0% |
| ACTGTGATTAATGATATACC+AGG | + | chr6_1:7380127-7380146 | None:intergenic | 30.0% | |
| TGTTCATCCTATCTTAACTA+AGG | - | chr6_1:7380182-7380201 | Msa0872030:intron | 30.0% | |
| GTTCATCCTATCTTAACTAA+GGG | - | chr6_1:7380183-7380202 | Msa0872030:intron | 30.0% | |
| ATAGAACCTCAACATTATCA+GGG | + | chr6_1:7380239-7380258 | None:intergenic | 30.0% | |
| AATAGAACCTCAACATTATC+AGG | + | chr6_1:7380240-7380259 | None:intergenic | 30.0% | |
| GTACAAATTGTGTCCATAAT+AGG | + | chr6_1:7380265-7380284 | None:intergenic | 30.0% | |
| TCAAAGTGAATTGTATGTAG+AGG | + | chr6_1:7380357-7380376 | None:intergenic | 30.0% | |
| AATGCTATGTTAACCATGAA+AGG | + | chr6_1:7380411-7380430 | None:intergenic | 30.0% | |
| TCCATACTGCTTTATAAACA+TGG | + | chr6_1:7380526-7380545 | None:intergenic | 30.0% | |
| TTAACACTTTGTGGAGATAA+CGG | - | chr6_1:7380555-7380574 | Msa0872030:CDS | 30.0% | |
| ! | TAGTTAGGTTGTGATCATTT+AGG | + | chr6_1:7380608-7380627 | None:intergenic | 30.0% |
| !!! | AGCAGATTTTTTGACAATTC+TGG | + | chr6_1:7380677-7380696 | None:intergenic | 30.0% |
| !!! | AACAGATGTTGTTTTCATTG+CGG | + | chr6_1:7380742-7380761 | None:intergenic | 30.0% |
| TACTGTCTCAATCAATGGAT+AGG | - | chr6_1:7373421-7373440 | Msa0872030:CDS | 35.0% | |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr6_1:7373447-7373466 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr6_1:7373448-7373467 | Msa0872030:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr6_1:7373479-7373498 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr6_1:7373607-7373626 | Msa0872030:CDS | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr6_1:7373713-7373732 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr6_1:7373722-7373741 | Msa0872030:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr6_1:7373806-7373825 | Msa0872030:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr6_1:7373980-7373999 | Msa0872030:CDS | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr6_1:7373983-7374002 | Msa0872030:CDS | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr6_1:7374005-7374024 | Msa0872030:CDS | 35.0% | |
| !! | ATTGCTGCTTTATTACTACC+AGG | - | chr6_1:7374091-7374110 | Msa0872030:CDS | 35.0% |
| TCGATCTGCAACATAGAAAA+AGG | - | chr6_1:7374166-7374185 | Msa0872030:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr6_1:7374247-7374266 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr6_1:7374334-7374353 | Msa0872030:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr6_1:7374337-7374356 | Msa0872030:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr6_1:7374559-7374578 | Msa0872030:intron | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr6_1:7374689-7374708 | Msa0872030:intron | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr6_1:7374690-7374709 | Msa0872030:intron | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr6_1:7374839-7374858 | Msa0872030:intron | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr6_1:7374870-7374889 | Msa0872030:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr6_1:7374940-7374959 | Msa0872030:intron | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr6_1:7374972-7374991 | Msa0872030:intron | 35.0% | |
| ATTGAGGCCAAGATTATAAC+TGG | - | chr6_1:7375086-7375105 | Msa0872030:intron | 35.0% | |
| ! | GAAGGTGATAATGACATTCT+TGG | + | chr6_1:7375140-7375159 | None:intergenic | 35.0% |
| TAAATCACAAGGTCAATCCT+TGG | - | chr6_1:7375232-7375251 | Msa0872030:intron | 35.0% | |
| GAAAGGATGTATTCAGTCAT+GGG | - | chr6_1:7375276-7375295 | Msa0872030:intron | 35.0% | |
| ! | GTATGTACCCTTTTGCTAAA+GGG | - | chr6_1:7375678-7375697 | Msa0872030:intron | 35.0% |
| CTCATTAACCCTTTAGCAAA+AGG | + | chr6_1:7375689-7375708 | None:intergenic | 35.0% | |
| GGTTAATGAGTAGAAGAGAA+AGG | - | chr6_1:7375699-7375718 | Msa0872030:intron | 35.0% | |
| CTATGGCATTTATTCAATCC+AGG | - | chr6_1:7375839-7375858 | Msa0872030:intron | 35.0% | |
| ATAATACATTAGGCAGTGAG+GGG | + | chr6_1:7376413-7376432 | None:intergenic | 35.0% | |
| ! | TTTTGAATTTTGCAGCAGCA+TGG | - | chr6_1:7376498-7376517 | Msa0872030:intron | 35.0% |
| GTGTTGTAAAGGACGTAAAT+GGG | + | chr6_1:7376559-7376578 | None:intergenic | 35.0% | |
| ATTCACCAACATGCATGAAA+TGG | - | chr6_1:7376729-7376748 | Msa0872030:intron | 35.0% | |
| ! | GCTTCACATAGTAGGAATTT+TGG | + | chr6_1:7376761-7376780 | None:intergenic | 35.0% |
| GGAAAATTGCTTCACATAGT+AGG | + | chr6_1:7376769-7376788 | None:intergenic | 35.0% | |
| GTGTTGTAAAGGACGTAAAT+GGG | + | chr6_1:7376559-7376578 | None:intergenic | 35.0% | |
| AAAATTCACGTGAATGGCTA+TGG | - | chr6_1:7376904-7376923 | Msa0872030:intron | 35.0% | |
| AAATTCACGTGAATGGCTAT+GGG | - | chr6_1:7376905-7376924 | Msa0872030:intron | 35.0% | |
| ATTCACCAACATGCATCAAA+TGG | - | chr6_1:7377037-7377056 | Msa0872030:intron | 35.0% | |
| TTCTTCCATTTGATGCATGT+TGG | + | chr6_1:7377045-7377064 | None:intergenic | 35.0% | |
| TAAATATGAGAATTCCCTGG+TGG | - | chr6_1:7377175-7377194 | Msa0872030:intron | 35.0% | |
| ! | TTGGTCTTCTCATAATGCTT+TGG | + | chr6_1:7377265-7377284 | None:intergenic | 35.0% |
| CAATACTAGGGATCGTATTT+GGG | - | chr6_1:7377282-7377301 | Msa0872030:intron | 35.0% | |
| ATTCATTCATCCCTACAAAG+AGG | - | chr6_1:7377312-7377331 | Msa0872030:intron | 35.0% | |
| ATGTGCTATACGCAGTATAA+GGG | - | chr6_1:7377585-7377604 | Msa0872030:intron | 35.0% | |
| TCCAACTGCAAATTTCTTTG+AGG | - | chr6_1:7377968-7377987 | Msa0872030:intron | 35.0% | |
| ACCTCAAAGAAATTTGCAGT+TGG | + | chr6_1:7377972-7377991 | None:intergenic | 35.0% | |
| TAGTAGATGAAGAGATGGAA+AGG | + | chr6_1:7378073-7378092 | None:intergenic | 35.0% | |
| AACTCTAGTAGATGAAGAGA+TGG | + | chr6_1:7378078-7378097 | None:intergenic | 35.0% | |
| TTCATCTACTAGAGTTAAGC+TGG | - | chr6_1:7378082-7378101 | Msa0872030:intron | 35.0% | |
| TTGGACTCATAAGTTAACTC+GGG | + | chr6_1:7378272-7378291 | None:intergenic | 35.0% | |
| CTTGGACTCATAAGTTAACT+CGG | + | chr6_1:7378273-7378292 | None:intergenic | 35.0% | |
| ! | CTGAGATGGAATCTATTTCT+TGG | + | chr6_1:7378291-7378310 | None:intergenic | 35.0% |
| !! | ATTGTTTTGCTATGACTTGG+TGG | - | chr6_1:7378312-7378331 | Msa0872030:intron | 35.0% |
| GTTTGAGTATATTGCCTCAA+AGG | + | chr6_1:7378648-7378667 | None:intergenic | 35.0% | |
| !! | ACTTTAAGATACATTGGACG+TGG | + | chr6_1:7378674-7378693 | None:intergenic | 35.0% |
| ! | CATCAATGGAACAACTGTTT+TGG | + | chr6_1:7378906-7378925 | None:intergenic | 35.0% |
| CACACAAAAAGATAAGACGA+AGG | - | chr6_1:7379201-7379220 | Msa0872030:CDS | 35.0% | |
| CTTTACACTTATGACTAAGG+TGG | + | chr6_1:7379395-7379414 | None:intergenic | 35.0% | |
| CAGCTTTACACTTATGACTA+AGG | + | chr6_1:7379398-7379417 | None:intergenic | 35.0% | |
| ATCCTATCTTAACTAAGGGA+TGG | - | chr6_1:7380187-7380206 | Msa0872030:intron | 35.0% | |
| ! | TGATTTCCCTGATAATGTTG+AGG | - | chr6_1:7380230-7380249 | Msa0872030:intron | 35.0% |
| GAGGTTCTATTTGCCTATTA+TGG | - | chr6_1:7380249-7380268 | Msa0872030:intron | 35.0% | |
| TGACTTCATCAATCCTTTCA+TGG | - | chr6_1:7380395-7380414 | Msa0872030:CDS | 35.0% | |
| GCCATGTTTATAAAGCAGTA+TGG | - | chr6_1:7380522-7380541 | Msa0872030:CDS | 35.0% | |
| CACATGACACTTGCTTAAAT+CGG | + | chr6_1:7380715-7380734 | None:intergenic | 35.0% | |
| !!! | ACAGATGTTGTTTTCATTGC+GGG | + | chr6_1:7380741-7380760 | None:intergenic | 35.0% |
| TGGATAGGCCTAATCATGTT+TGG | - | chr6_1:7373436-7373455 | Msa0872030:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr6_1:7373437-7373456 | Msa0872030:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr6_1:7373701-7373720 | Msa0872030:CDS | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr6_1:7373940-7373959 | Msa0872030:CDS | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr6_1:7373990-7374009 | Msa0872030:CDS | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr6_1:7374289-7374308 | Msa0872030:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr6_1:7374391-7374410 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr6_1:7374529-7374548 | Msa0872030:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr6_1:7374530-7374549 | Msa0872030:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr6_1:7374549-7374568 | Msa0872030:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr6_1:7374550-7374569 | Msa0872030:intron | 40.0% | |
| CAGTTATCAAAAGCTCAGGT+GGG | + | chr6_1:7374603-7374622 | None:intergenic | 40.0% | |
| TCAGTTATCAAAAGCTCAGG+TGG | + | chr6_1:7374604-7374623 | None:intergenic | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr6_1:7374939-7374958 | Msa0872030:intron | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr6_1:7375013-7375032 | Msa0872030:intron | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr6_1:7375014-7375033 | Msa0872030:intron | 40.0% | |
| TAATCTTGGCCTCAATGACA+TGG | + | chr6_1:7375082-7375101 | None:intergenic | 40.0% | |
| TATCACCTTCACAATCACCT+TGG | - | chr6_1:7375150-7375169 | Msa0872030:intron | 40.0% | |
| CGAAAGGATGTATTCAGTCA+TGG | - | chr6_1:7375275-7375294 | Msa0872030:intron | 40.0% | |
| ACCTCAGTGTAAGAAGCTTA+TGG | - | chr6_1:7375622-7375641 | Msa0872030:intron | 40.0% | |
| CCTCAGTGTAAGAAGCTTAT+GGG | - | chr6_1:7375623-7375642 | Msa0872030:intron | 40.0% | |
| ! | CGTATGTACCCTTTTGCTAA+AGG | - | chr6_1:7375677-7375696 | Msa0872030:intron | 40.0% |
| !! | AATCGGTTTTATGGTCTTCG+AGG | - | chr6_1:7375894-7375913 | Msa0872030:intron | 40.0% |
| TGTCTTGGAAGCCTTCAAAA+TGG | - | chr6_1:7375954-7375973 | Msa0872030:intron | 40.0% | |
| GAAGCCTTCAAAATGGCAAT+TGG | - | chr6_1:7375961-7375980 | Msa0872030:intron | 40.0% | |
| !!! | TTCGCCAATTGCCATTTTGA+AGG | + | chr6_1:7375968-7375987 | Msa0872050:intron | 40.0% |
| !! | AGATACACAGTTGGTTCTGA+AGG | + | chr6_1:7376034-7376053 | Msa0872050:intron | 40.0% |
| ATGGGATTCAGATACACAGT+TGG | + | chr6_1:7376043-7376062 | Msa0872050:intron | 40.0% | |
| ! | GGTGTTGTAAAGGACGTAAA+TGG | + | chr6_1:7376560-7376579 | None:intergenic | 40.0% |
| TTACGTCCTTTACAACACCT+TGG | - | chr6_1:7376561-7376580 | Msa0872030:intron | 40.0% | |
| ACCAACATGCATGAAATGGA+AGG | - | chr6_1:7376733-7376752 | Msa0872030:intron | 40.0% | |
| TCCTTCCATTTCATGCATGT+TGG | + | chr6_1:7376737-7376756 | None:intergenic | 40.0% | |
| ! | GGTGTTGTAAAGGACGTAAA+TGG | + | chr6_1:7376560-7376579 | None:intergenic | 40.0% |
| TTACGTCCTTTACAACACCA+TGG | - | chr6_1:7376867-7376886 | Msa0872030:intron | 40.0% | |
| CCAAATACGATCCCTAGTAT+TGG | + | chr6_1:7377284-7377303 | None:intergenic | 40.0% | |
| CCAATACTAGGGATCGTATT+TGG | - | chr6_1:7377281-7377300 | Msa0872030:intron | 40.0% | |
| CCAAAATAGGCCTCTTTGTA+GGG | + | chr6_1:7377325-7377344 | None:intergenic | 40.0% | |
| ACCAAAATAGGCCTCTTTGT+AGG | + | chr6_1:7377326-7377345 | None:intergenic | 40.0% | |
| !! | TACAAAGAGGCCTATTTTGG+TGG | - | chr6_1:7377325-7377344 | Msa0872030:intron | 40.0% |
| TTGGTGGAAAACACAATGGA+AGG | - | chr6_1:7377341-7377360 | Msa0872030:intron | 40.0% | |
| CATGTGCTATACGCAGTATA+AGG | - | chr6_1:7377584-7377603 | Msa0872030:intron | 40.0% | |
| TGCTGTGAAAGTGATGAAGA+AGG | + | chr6_1:7377703-7377722 | None:intergenic | 40.0% | |
| ! | AGTTTAAGGTACATTGGCGA+TGG | + | chr6_1:7378011-7378030 | None:intergenic | 40.0% |
| TGGACTCATAAGTTAACTCG+GGG | + | chr6_1:7378271-7378290 | None:intergenic | 40.0% | |
| GCACAATAGACCAGATTCAA+AGG | - | chr6_1:7378339-7378358 | Msa0872030:intron | 40.0% | |
| TCCAGCCAAAAATTCCTTTG+AGG | - | chr6_1:7378631-7378650 | Msa0872030:intron | 40.0% | |
| TAAGATACATTGGACGTGGT+TGG | + | chr6_1:7378670-7378689 | None:intergenic | 40.0% | |
| TTTCTTCGTCAACCAGAGTT+AGG | - | chr6_1:7378741-7378760 | Msa0872030:intron | 40.0% | |
| ! | TTAACTCAAGGGTGCATCAA+TGG | + | chr6_1:7378920-7378939 | None:intergenic | 40.0% |
| TTTGTTTACTCGCCATGTTG+TGG | + | chr6_1:7379887-7379906 | None:intergenic | 40.0% | |
| ! | ACAACAGTGAAGCGTTCAAT+TGG | + | chr6_1:7379927-7379946 | None:intergenic | 40.0% |
| TCACTGAACTACAAGATTCC+TGG | - | chr6_1:7380106-7380125 | Msa0872030:intron | 40.0% | |
| GACCATCCCTTAGTTAAGAT+AGG | + | chr6_1:7380192-7380211 | None:intergenic | 40.0% | |
| ! | ATTTTGCTGCGACTATGGAA+TGG | + | chr6_1:7380333-7380352 | None:intergenic | 40.0% |
| TAATGCCTAGCTGAGTAGTT+AGG | + | chr6_1:7380623-7380642 | None:intergenic | 40.0% | |
| TACTCAGCTAGGCATTAACT+GGG | - | chr6_1:7380626-7380645 | Msa0872030:intron | 40.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr6_1:7373465-7373484 | Msa0872030:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr6_1:7373974-7373993 | Msa0872030:CDS | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr6_1:7373991-7374010 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr6_1:7373989-7374008 | Msa0872030:CDS | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr6_1:7374067-7374086 | Msa0872030:CDS | 45.0% | |
| ! | GCTGCTTTATTACTACCAGG+TGG | - | chr6_1:7374094-7374113 | Msa0872030:CDS | 45.0% |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr6_1:7374148-7374167 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr6_1:7374154-7374173 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr6_1:7374434-7374453 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr6_1:7374535-7374554 | Msa0872030:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr6_1:7374544-7374563 | Msa0872030:intron | 45.0% | |
| CATTACATAAGCCCTCAGCT+TGG | + | chr6_1:7375028-7375047 | None:intergenic | 45.0% | |
| CAAGCTGAGGGCTTATGTAA+TGG | - | chr6_1:7375026-7375045 | Msa0872030:intron | 45.0% | |
| ! | ACTTGCTGACCATGTCATTG+AGG | - | chr6_1:7375070-7375089 | Msa0872030:intron | 45.0% |
| AATGGCCAAGGTGATTGTGA+AGG | + | chr6_1:7375158-7375177 | None:intergenic | 45.0% | |
| GGTCAATCCTTGGATCATGT+TGG | - | chr6_1:7375242-7375261 | Msa0872030:intron | 45.0% | |
| TCCAGGGTTAAGAGCAAAGA+AGG | - | chr6_1:7375317-7375336 | Msa0872030:intron | 45.0% | |
| ACCTTCTTTGCTCTTAACCC+TGG | + | chr6_1:7375321-7375340 | Msa0872040:intron | 45.0% | |
| CCCATAAGCTTCTTACACTG+AGG | + | chr6_1:7375626-7375645 | None:intergenic | 45.0% | |
| CAGTGTAAGAAGCTTATGGG+AGG | - | chr6_1:7375626-7375645 | Msa0872030:intron | 45.0% | |
| CCTTCTGCAGTAGTATCAGT+TGG | + | chr6_1:7375800-7375819 | None:intergenic | 45.0% | |
| CCAACTGATACTACTGCAGA+AGG | - | chr6_1:7375797-7375816 | Msa0872030:intron | 45.0% | |
| AAGAACATTACAGAGGACCC+TGG | + | chr6_1:7375860-7375879 | None:intergenic | 45.0% | |
| CCAAGACACACAATACACAG+TGG | + | chr6_1:7375942-7375961 | Msa0872050:intron | 45.0% | |
| CCACTGTGTATTGTGTGTCT+TGG | - | chr6_1:7375939-7375958 | Msa0872030:intron | 45.0% | |
| ! | TTCTGAAGGACATGAAGCAG+TGG | + | chr6_1:7376020-7376039 | Msa0872050:intron | 45.0% |
| !! | AGTGTAACAAAGGTGCTGCT+AGG | + | chr6_1:7376088-7376107 | Msa0872050:CDS | 45.0% |
| ATAGCAATGACGATCCACCA+GGG | + | chr6_1:7377192-7377211 | None:intergenic | 45.0% | |
| AATAGCAATGACGATCCACC+AGG | + | chr6_1:7377193-7377212 | None:intergenic | 45.0% | |
| TAGGGATCGTATTTGGGAGA+AGG | - | chr6_1:7377288-7377307 | Msa0872030:intron | 45.0% | |
| ! | CCCTACAAAGAGGCCTATTT+TGG | - | chr6_1:7377322-7377341 | Msa0872030:intron | 45.0% |
| TCATCTATATGCCCCCTAAG+TGG | - | chr6_1:7377651-7377670 | Msa0872030:intron | 45.0% | |
| ! | AGCTTTCCACATGCCACTTA+GGG | + | chr6_1:7377667-7377686 | None:intergenic | 45.0% |
| TGAATCACGCATGTTGCATG+TGG | + | chr6_1:7377922-7377941 | None:intergenic | 45.0% | |
| TAAGGTACATTGGCGATGGT+TGG | + | chr6_1:7378007-7378026 | None:intergenic | 45.0% | |
| TTAACTCGGGGCTGTATTGA+TGG | + | chr6_1:7378259-7378278 | None:intergenic | 45.0% | |
| !!! | GCCTCAAAGGAATTTTTGGC+TGG | + | chr6_1:7378635-7378654 | None:intergenic | 45.0% |
| GCATGTGCAATGAAACACCA+TGG | - | chr6_1:7379719-7379738 | Msa0872030:intron | 45.0% | |
| ACTATGGAATGGAGGAATGC+AGG | + | chr6_1:7380322-7380341 | None:intergenic | 45.0% | |
| CACAACCTAACTACTCAGCT+AGG | - | chr6_1:7380615-7380634 | Msa0872030:intron | 45.0% | |
| CTACTCAGCTAGGCATTAAC+TGG | - | chr6_1:7380625-7380644 | Msa0872030:intron | 45.0% | |
| !! | ATAAGAATTTATTTATTTAA+AGG | + | chr6_1:7379024-7379043 | None:intergenic | 5.0% |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr6_1:7373953-7373972 | Msa0872030:CDS | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr6_1:7374112-7374131 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr6_1:7374228-7374247 | Msa0872030:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr6_1:7374370-7374389 | Msa0872030:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr6_1:7374382-7374401 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr6_1:7374637-7374656 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr6_1:7374883-7374902 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr6_1:7374950-7374969 | None:intergenic | 50.0% | |
| CGCACAAGTTTGAATGGCCA+AGG | + | chr6_1:7375170-7375189 | None:intergenic | 50.0% | |
| TGCCTGCGCACAAGTTTGAA+TGG | + | chr6_1:7375176-7375195 | None:intergenic | 50.0% | |
| GGCAATTGGCGAACATAGCA+CGG | - | chr6_1:7375975-7375994 | Msa0872030:intron | 50.0% | |
| !! | ACAAAGGTGCTGCTAGGAGA+AGG | + | chr6_1:7376082-7376101 | Msa0872050:CDS | 50.0% |
| ! | CTTTCCACATGCCACTTAGG+GGG | + | chr6_1:7377665-7377684 | None:intergenic | 50.0% |
| ! | GCTTTCCACATGCCACTTAG+GGG | + | chr6_1:7377666-7377685 | None:intergenic | 50.0% |
| ! | GAGCTTTCCACATGCCACTT+AGG | + | chr6_1:7377668-7377687 | None:intergenic | 50.0% |
| TTGCTGCGACTATGGAATGG+AGG | + | chr6_1:7380330-7380349 | None:intergenic | 50.0% | |
| !! | GAGGCATTTTGCTGCGACTA+TGG | + | chr6_1:7380338-7380357 | None:intergenic | 50.0% |
| AGGAGGCTCACACGAAATCC+AGG | - | chr6_1:7373504-7373523 | Msa0872030:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr6_1:7373956-7373975 | Msa0872030:CDS | 55.0% | |
| GGCCATTCAAACTTGTGCGC+AGG | - | chr6_1:7375171-7375190 | Msa0872030:intron | 55.0% | |
| CGAACATAGCACGGTCTGCT+TGG | - | chr6_1:7375984-7376003 | Msa0872030:intron | 55.0% | |
| TATGCCCCCTAAGTGGCATG+TGG | - | chr6_1:7377658-7377677 | Msa0872030:intron | 55.0% | |
| AGTGGCATGTGGAAAGCTCG+TGG | - | chr6_1:7377669-7377688 | Msa0872030:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 7373417 | 7380779 | 7373417 | ID=Msa0872030;Name=Msa0872030 |
| chr6_1 | mRNA | 7373417 | 7380779 | 7373417 | ID=Msa0872030-mRNA-1;Parent=Msa0872030;Name=Msa0872030-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0.75|0.6|5|0|466 |
| chr6_1 | exon | 7380671 | 7380779 | 7380671 | ID=Msa0872030-mRNA-1:exon:2238;Parent=Msa0872030-mRNA-1 |
| chr6_1 | exon | 7380369 | 7380587 | 7380369 | ID=Msa0872030-mRNA-1:exon:2237;Parent=Msa0872030-mRNA-1 |
| chr6_1 | exon | 7379418 | 7379564 | 7379418 | ID=Msa0872030-mRNA-1:exon:2236;Parent=Msa0872030-mRNA-1 |
| chr6_1 | exon | 7379135 | 7379346 | 7379135 | ID=Msa0872030-mRNA-1:exon:2235;Parent=Msa0872030-mRNA-1 |
| chr6_1 | exon | 7373417 | 7374130 | 7373417 | ID=Msa0872030-mRNA-1:exon:2234;Parent=Msa0872030-mRNA-1 |
| chr6_1 | CDS | 7380671 | 7380779 | 7380671 | ID=Msa0872030-mRNA-1:cds;Parent=Msa0872030-mRNA-1 |
| chr6_1 | CDS | 7380369 | 7380587 | 7380369 | ID=Msa0872030-mRNA-1:cds;Parent=Msa0872030-mRNA-1 |
| chr6_1 | CDS | 7379418 | 7379564 | 7379418 | ID=Msa0872030-mRNA-1:cds;Parent=Msa0872030-mRNA-1 |
| chr6_1 | CDS | 7379135 | 7379346 | 7379135 | ID=Msa0872030-mRNA-1:cds;Parent=Msa0872030-mRNA-1 |
| chr6_1 | CDS | 7373417 | 7374130 | 7373417 | ID=Msa0872030-mRNA-1:cds;Parent=Msa0872030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
