Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242860 | XP_024642270.2 | 84.932 | 73 | 11 | 0 | 32 | 104 | 968 | 1040 | 2.09e-32 | 136 |
| Msa1242860 | XP_024642270.2 | 87.500 | 144 | 18 | 0 | 104 | 247 | 1253 | 1396 | 1.09e-76 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242860 | A0A2K3NJY4 | 68.750 | 144 | 45 | 0 | 104 | 247 | 205 | 348 | 5.59e-61 | 208 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0813470 | Msa1242860 | 0.974636 | 1.659178e-138 | -8.615850e-47 |
| Msa1237120 | Msa1242860 | 0.817456 | 3.267303e-52 | -8.615850e-47 |
| Msa1075690 | Msa1242860 | 0.911439 | 6.074642e-83 | -8.615850e-47 |
| Msa1131640 | Msa1242860 | 0.942138 | 1.221729e-101 | -8.615850e-47 |
| Msa1131730 | Msa1242860 | 0.890810 | 7.036177e-74 | -8.615850e-47 |
| Msa0872030 | Msa1242860 | 0.952416 | 2.539154e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242860 | MtrunA17_Chr3g0101861 | 67.133 | 143 | 47 | 0 | 104 | 246 | 201 | 343 | 7.67e-61 | 198 |
| Msa1242860 | MtrunA17_Chr1g0173691 | 50.000 | 144 | 72 | 0 | 104 | 247 | 107 | 250 | 1.08e-43 | 151 |
| Msa1242860 | MtrunA17_Chr3g0133361 | 45.455 | 154 | 82 | 1 | 95 | 246 | 18 | 171 | 1.12e-43 | 149 |
| Msa1242860 | MtrunA17_Chr6g0472831 | 44.444 | 144 | 80 | 0 | 104 | 247 | 29 | 172 | 5.33e-40 | 138 |
| Msa1242860 | MtrunA17_Chr7g0269671 | 46.309 | 149 | 72 | 3 | 105 | 246 | 103 | 250 | 4.43e-34 | 125 |
| Msa1242860 | MtrunA17_Chr3g0101871 | 64.368 | 87 | 31 | 0 | 1 | 87 | 1014 | 1100 | 1.91e-32 | 125 |
| Msa1242860 | MtrunA17_Chr7g0248821 | 57.333 | 75 | 32 | 0 | 172 | 246 | 1 | 75 | 5.62e-22 | 90.1 |
| Msa1242860 | MtrunA17_Chr1g0206511 | 57.895 | 76 | 32 | 0 | 171 | 246 | 1 | 76 | 1.02e-21 | 89.4 |
| Msa1242860 | MtrunA17_Chr3g0100401 | 55.000 | 80 | 28 | 2 | 171 | 246 | 1 | 76 | 2.27e-21 | 86.3 |
| Msa1242860 | MtrunA17_Chr1g0206501 | 35.922 | 103 | 65 | 1 | 3 | 104 | 130 | 232 | 1.95e-14 | 72.4 |
| Msa1242860 | MtrunA17_Chr1g0173681 | 43.077 | 65 | 37 | 0 | 1 | 65 | 271 | 335 | 3.46e-11 | 62.4 |
| Msa1242860 | MtrunA17_Chr7g0269661 | 34.951 | 103 | 67 | 0 | 1 | 103 | 39 | 141 | 5.73e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242860 | AT3G51690.1 | 42.958 | 142 | 77 | 2 | 105 | 246 | 71 | 208 | 1.57e-27 | 108 |
| Msa1242860 | AT3G51700.1 | 41.549 | 142 | 82 | 1 | 105 | 246 | 72 | 212 | 4.85e-25 | 101 |
| Msa1242860 | AT5G28780.1 | 41.379 | 116 | 64 | 2 | 133 | 246 | 97 | 210 | 5.90e-20 | 87.4 |
Find 46 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTTTGCTTCTCTTAC+AGG | 0.168521 | 8_2:-27482391 | Msa1242860:intron |
| AGATTTCTTAACAACATTAT+TGG | 0.221249 | 8_2:+27481198 | None:intergenic |
| TGAAGGCAATTTAGAAATTC+TGG | 0.223053 | 8_2:+27481267 | None:intergenic |
| TATATTAGCTTCAACAATTC+AGG | 0.244967 | 8_2:-27481483 | Msa1242860:CDS |
| AGTTGCTTCACCGCGATCTA+TGG | 0.281966 | 8_2:+27481317 | None:intergenic |
| AAAATTTGTTCTTGAACAAT+AGG | 0.292476 | 8_2:+27482418 | None:intergenic |
| ATGGAGAATTCTTGAGGAAT+AGG | 0.307309 | 8_2:-27481508 | Msa1242860:CDS |
| CTAAATTGCCTTCAAACGTC+TGG | 0.336659 | 8_2:-27481258 | Msa1242860:CDS |
| TGGATAGGCCTAATCATGTT+TGG | 0.353529 | 8_2:-27482761 | Msa1242860:CDS |
| AAATGATGGTTACTATGATA+TGG | 0.366358 | 8_2:-27481624 | Msa1242860:CDS |
| TTGAGCTTGATAGTATGATT+AGG | 0.386178 | 8_2:+27481231 | None:intergenic |
| GGTTATGTTGCTGATTTCTT+CGG | 0.388583 | 8_2:-27482475 | Msa1242860:CDS |
| TGGAGAATTCTTGAGGAATA+GGG | 0.422054 | 8_2:-27481507 | Msa1242860:CDS |
| GGATAGGCCTAATCATGTTT+GGG | 0.424172 | 8_2:-27482760 | Msa1242860:CDS |
| GCTTGGACGATTGCAGCAAT+AGG | 0.447314 | 8_2:+27481563 | None:intergenic |
| ATAAATTTGGATATGTAGCT+TGG | 0.452666 | 8_2:+27481546 | None:intergenic |
| AAATCAGCAACATAACCATT+TGG | 0.456921 | 8_2:+27482481 | None:intergenic |
| CATACTATCAAGCTCAAAGT+TGG | 0.460185 | 8_2:-27481225 | Msa1242860:CDS |
| AACACTTGCAATCTAACAAA+AGG | 0.468910 | 8_2:-27482534 | Msa1242860:CDS |
| TAGGCAACCCAGACGTTTGA+AGG | 0.478685 | 8_2:+27481250 | None:intergenic |
| TCATGGAAGTTCCTCTCTGA+TGG | 0.479207 | 8_2:-27482732 | Msa1242860:CDS |
| TTCAAAATGGAGAATTCTTG+AGG | 0.486826 | 8_2:-27481514 | Msa1242860:CDS |
| AACTCAGTTATCAAAAGCTC+AGG | 0.488952 | 8_2:+27481593 | None:intergenic |
| TAATTGTGCAGGAGAAGAAA+AGG | 0.495174 | 8_2:-27481358 | Msa1242860:intron |
| TATTGTAGCTTTAATTCTAA+CGG | 0.497576 | 8_2:-27482596 | Msa1242860:intron |
| ATCATGTTTGGGAAAACTCA+TGG | 0.501729 | 8_2:-27482749 | Msa1242860:CDS |
| AGCTTTAATTCTAACGGATG+AGG | 0.502130 | 8_2:-27482590 | Msa1242860:CDS |
| CAAGCTGAGGGCTTATGTAA+TGG | 0.502481 | 8_2:-27481171 | Msa1242860:CDS |
| GAAATTGGTAAGGGAAATGA+TGG | 0.506112 | 8_2:-27481638 | Msa1242860:CDS |
| ATGGAATTCTTTATGATCAA+AGG | 0.507330 | 8_2:-27482713 | Msa1242860:CDS |
| TAAATTGCCTTCAAACGTCT+GGG | 0.508177 | 8_2:-27481257 | Msa1242860:CDS |
| AAATGCATGCCGTATCCAAA+TGG | 0.527092 | 8_2:-27482496 | Msa1242860:CDS |
| AGGAGGCTCACACGAAATCC+AGG | 0.529108 | 8_2:-27482693 | Msa1242860:intron |
| TCAGTTATCAAAAGCTCAGG+TGG | 0.544158 | 8_2:+27481596 | None:intergenic |
| ACAGATTAATACATGATGAA+AGG | 0.569383 | 8_2:-27482450 | Msa1242860:CDS |
| TGGGAATGGAGAAATTGGTA+AGG | 0.581741 | 8_2:-27481648 | Msa1242860:intron |
| TACTGTCTCAATCAATGGAT+AGG | 0.594802 | 8_2:-27482776 | None:intergenic |
| CATTACATAAGCCCTCAGCT+TGG | 0.598858 | 8_2:+27481172 | None:intergenic |
| GCAACATAACCATTTGGATA+CGG | 0.603860 | 8_2:+27482487 | None:intergenic |
| CAGTTATCAAAAGCTCAGGT+GGG | 0.621340 | 8_2:+27481597 | None:intergenic |
| GAATTCTTTATGATCAAAGG+AGG | 0.629297 | 8_2:-27482710 | Msa1242860:CDS |
| AGTTCAAATTCCATAGATCG+CGG | 0.665211 | 8_2:-27481327 | Msa1242860:CDS |
| AGAAATCTAGACCAAGCTGA+GGG | 0.666049 | 8_2:-27481183 | Msa1242860:CDS |
| CATAAAGAATTCCATCAGAG+AGG | 0.668846 | 8_2:+27482721 | None:intergenic |
| GGGAATGGAGAAATTGGTAA+GGG | 0.673398 | 8_2:-27481647 | Msa1242860:intron |
| AAGAAATCTAGACCAAGCTG+AGG | 0.674713 | 8_2:-27481184 | Msa1242860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr8_2:27482390-27482409 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr8_2:27482393-27482412 | Msa1242860:CDS | 15.0% |
| !!! | TGAAAATTTTGCAATAAATT+TGG | + | chr8_2:27482390-27482409 | None:intergenic | 15.0% |
| !!! | TTATTGCAAAATTTTCAAAA+TGG | - | chr8_2:27482393-27482412 | Msa1242860:CDS | 15.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr8_2:27481315-27481334 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr8_2:27481324-27481343 | Msa1242860:CDS | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr8_2:27481505-27481524 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr8_2:27481657-27481676 | Msa1242860:intron | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr8_2:27482036-27482055 | Msa1242860:intron | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr8_2:27482725-27482744 | None:intergenic | 20.0% |
| !! | AAGCTACAATATAATAACAT+TGG | + | chr8_2:27481315-27481334 | None:intergenic | 20.0% |
| !!! | TATTGTAGCTTTAATTCTAA+CGG | - | chr8_2:27481324-27481343 | Msa1242860:CDS | 20.0% |
| !!! | AAAATTTGTTCTTGAACAAT+AGG | + | chr8_2:27481505-27481524 | None:intergenic | 20.0% |
| !! | TATTTATGAAAAGATCATGA+AGG | - | chr8_2:27481657-27481676 | Msa1242860:intron | 20.0% |
| !!! | AAACCTTCAAAACTAATTTT+TGG | - | chr8_2:27482036-27482055 | Msa1242860:intron | 20.0% |
| !! | AGATTTCTTAACAACATTAT+TGG | + | chr8_2:27482725-27482744 | None:intergenic | 20.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr8_2:27481207-27481226 | Msa1242860:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr8_2:27481470-27481489 | Msa1242860:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr8_2:27481738-27481757 | Msa1242860:intron | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr8_2:27481935-27481954 | Msa1242860:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr8_2:27481936-27481955 | Msa1242860:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr8_2:27482146-27482165 | Msa1242860:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr8_2:27482196-27482215 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr8_2:27482195-27482214 | Msa1242860:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr8_2:27482238-27482257 | Msa1242860:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr8_2:27482296-27482315 | Msa1242860:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr8_2:27482377-27482396 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr8_2:27482437-27482456 | Msa1242860:CDS | 25.0% |
| ! | ATATCGATAAGTATATTACC+TGG | + | chr8_2:27482501-27482520 | None:intergenic | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr8_2:27482551-27482570 | Msa1242860:CDS | 25.0% |
| ! | ATGGAATTCTTTATGATCAA+AGG | - | chr8_2:27481207-27481226 | Msa1242860:CDS | 25.0% |
| ! | ACAGATTAATACATGATGAA+AGG | - | chr8_2:27481470-27481489 | Msa1242860:CDS | 25.0% |
| ! | AACATATATGTGGAATACTT+TGG | - | chr8_2:27481738-27481757 | Msa1242860:intron | 25.0% |
| !! | AGCAAACAAAGTTGATTATA+TGG | - | chr8_2:27481935-27481954 | Msa1242860:intron | 25.0% |
| !! | GCAAACAAAGTTGATTATAT+GGG | - | chr8_2:27481936-27481955 | Msa1242860:intron | 25.0% |
| ! | AATAAATGCCTCATACATTT+GGG | - | chr8_2:27482146-27482165 | Msa1242860:intron | 25.0% |
| !! | ATTTGAAAGTCGCATATTTT+TGG | + | chr8_2:27482196-27482215 | None:intergenic | 25.0% |
| ! | AAAAATATGCGACTTTCAAA+TGG | - | chr8_2:27482195-27482214 | Msa1242860:intron | 25.0% |
| !! | ATACAAGAAAGTTTTCTGAA+TGG | - | chr8_2:27482238-27482257 | Msa1242860:intron | 25.0% |
| ! | AAATGATGGTTACTATGATA+TGG | - | chr8_2:27482296-27482315 | Msa1242860:intron | 25.0% |
| ! | ATAAATTTGGATATGTAGCT+TGG | + | chr8_2:27482377-27482396 | None:intergenic | 25.0% |
| !! | TATATTAGCTTCAACAATTC+AGG | - | chr8_2:27482437-27482456 | Msa1242860:CDS | 25.0% |
| ! | ATATCGATAAGTATATTACC+TGG | + | chr8_2:27482501-27482520 | None:intergenic | 25.0% |
| ! | TTATATCTTCTTAATTGTGC+AGG | - | chr8_2:27482551-27482570 | Msa1242860:CDS | 25.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr8_2:27481210-27481229 | Msa1242860:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr8_2:27481248-27481267 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr8_2:27481386-27481405 | Msa1242860:intron | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr8_2:27481442-27481461 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr8_2:27481632-27481651 | Msa1242860:CDS | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr8_2:27481633-27481652 | Msa1242860:CDS | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr8_2:27481634-27481653 | Msa1242860:CDS | 30.0% | |
| ATTGCTTCTTTATTACTACC+AGG | - | chr8_2:27481814-27481833 | Msa1242860:intron | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr8_2:27481942-27481961 | Msa1242860:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr8_2:27482010-27482029 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr8_2:27482009-27482028 | Msa1242860:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr8_2:27482042-27482061 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr8_2:27482039-27482058 | Msa1242860:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr8_2:27482140-27482159 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr8_2:27482145-27482164 | Msa1242860:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr8_2:27482173-27482192 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr8_2:27482247-27482266 | Msa1242860:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr8_2:27482248-27482267 | Msa1242860:intron | 30.0% |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr8_2:27482406-27482425 | Msa1242860:CDS | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr8_2:27482480-27482499 | Msa1242860:CDS | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr8_2:27482656-27482675 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr8_2:27482692-27482711 | None:intergenic | 30.0% |
| GAATTCTTTATGATCAAAGG+AGG | - | chr8_2:27481210-27481229 | Msa1242860:CDS | 30.0% | |
| ATTTGTTTCAACATTGTACC+TGG | + | chr8_2:27481248-27481267 | None:intergenic | 30.0% | |
| AACACTTGCAATCTAACAAA+AGG | - | chr8_2:27481386-27481405 | Msa1242860:intron | 30.0% | |
| AAATCAGCAACATAACCATT+TGG | + | chr8_2:27481442-27481461 | None:intergenic | 30.0% | |
| TCTTTGTGTTAGATGAACAA+AGG | - | chr8_2:27481632-27481651 | Msa1242860:CDS | 30.0% | |
| CTTTGTGTTAGATGAACAAA+GGG | - | chr8_2:27481633-27481652 | Msa1242860:CDS | 30.0% | |
| TTTGTGTTAGATGAACAAAG+GGG | - | chr8_2:27481634-27481653 | Msa1242860:CDS | 30.0% | |
| ATTGCTTCTTTATTACTACC+AGG | - | chr8_2:27481814-27481833 | Msa1242860:intron | 30.0% | |
| ! | AAAGTTGATTATATGGGATG+AGG | - | chr8_2:27481942-27481961 | Msa1242860:intron | 30.0% |
| TACACTCATGATATCTCTTA+AGG | + | chr8_2:27482010-27482029 | None:intergenic | 30.0% | |
| TTAAGAGATATCATGAGTGT+AGG | - | chr8_2:27482009-27482028 | Msa1242860:intron | 30.0% | |
| !!! | CCACCAAAAATTAGTTTTGA+AGG | + | chr8_2:27482042-27482061 | None:intergenic | 30.0% |
| !! | CCTTCAAAACTAATTTTTGG+TGG | - | chr8_2:27482039-27482058 | Msa1242860:intron | 30.0% |
| ! | ATGAGGCATTTATTGTAGAA+TGG | + | chr8_2:27482140-27482159 | None:intergenic | 30.0% |
| CAATAAATGCCTCATACATT+TGG | - | chr8_2:27482145-27482164 | Msa1242860:intron | 30.0% | |
| TCAACATCAATACTTTGCAA+TGG | + | chr8_2:27482173-27482192 | None:intergenic | 30.0% | |
| ! | AGTTTTCTGAATGGATCTTA+AGG | - | chr8_2:27482247-27482266 | Msa1242860:intron | 30.0% |
| ! | GTTTTCTGAATGGATCTTAA+GGG | - | chr8_2:27482248-27482267 | Msa1242860:intron | 30.0% |
| TTCAAAATGGAGAATTCTTG+AGG | - | chr8_2:27482406-27482425 | Msa1242860:CDS | 30.0% | |
| !! | TATGTTTTGAATCTTCTTCC+AGG | - | chr8_2:27482480-27482499 | Msa1242860:CDS | 30.0% |
| TGAAGGCAATTTAGAAATTC+TGG | + | chr8_2:27482656-27482675 | None:intergenic | 30.0% | |
| ! | TTGAGCTTGATAGTATGATT+AGG | + | chr8_2:27482692-27482711 | None:intergenic | 30.0% |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr8_2:27481170-27481189 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr8_2:27481171-27481190 | Msa1242860:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr8_2:27481202-27481221 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr8_2:27481330-27481349 | Msa1242860:CDS | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr8_2:27481436-27481455 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr8_2:27481445-27481464 | Msa1242860:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr8_2:27481529-27481548 | Msa1242860:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr8_2:27481703-27481722 | Msa1242860:intron | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr8_2:27481706-27481725 | Msa1242860:intron | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr8_2:27481728-27481747 | Msa1242860:intron | 35.0% | |
| TCGATCTGCAACATAGAAAA+AGG | - | chr8_2:27481889-27481908 | Msa1242860:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr8_2:27481970-27481989 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr8_2:27482057-27482076 | Msa1242860:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr8_2:27482060-27482079 | Msa1242860:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr8_2:27482282-27482301 | Msa1242860:intron | 35.0% | |
| AACTCAGTTATCAAAAGCTC+AGG | + | chr8_2:27482330-27482349 | None:intergenic | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr8_2:27482412-27482431 | Msa1242860:CDS | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr8_2:27482413-27482432 | Msa1242860:CDS | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr8_2:27482562-27482581 | Msa1242860:CDS | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr8_2:27482593-27482612 | Msa1242860:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr8_2:27482663-27482682 | Msa1242860:intron | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr8_2:27482695-27482714 | Msa1242860:CDS | 35.0% | |
| ! | GAGTTTTCCCAAACATGATT+AGG | + | chr8_2:27481170-27481189 | None:intergenic | 35.0% |
| ATCATGTTTGGGAAAACTCA+TGG | - | chr8_2:27481171-27481190 | Msa1242860:CDS | 35.0% | |
| CATAAAGAATTCCATCAGAG+AGG | + | chr8_2:27481202-27481221 | None:intergenic | 35.0% | |
| ! | AGCTTTAATTCTAACGGATG+AGG | - | chr8_2:27481330-27481349 | Msa1242860:CDS | 35.0% |
| GCAACATAACCATTTGGATA+CGG | + | chr8_2:27481436-27481455 | None:intergenic | 35.0% | |
| !! | GGTTATGTTGCTGATTTCTT+CGG | - | chr8_2:27481445-27481464 | Msa1242860:CDS | 35.0% |
| CAATTGTTTGCTTCTCTTAC+AGG | - | chr8_2:27481529-27481548 | Msa1242860:CDS | 35.0% | |
| ! | GTCTTTTTCCTCTATGGTTA+TGG | - | chr8_2:27481703-27481722 | Msa1242860:intron | 35.0% |
| ! | TTTTTCCTCTATGGTTATGG+AGG | - | chr8_2:27481706-27481725 | Msa1242860:intron | 35.0% |
| GAACTGGGAAAACATATATG+TGG | - | chr8_2:27481728-27481747 | Msa1242860:intron | 35.0% | |
| TCGATCTGCAACATAGAAAA+AGG | - | chr8_2:27481889-27481908 | Msa1242860:intron | 35.0% | |
| AAACAGAATCTATGTGCCAT+TGG | + | chr8_2:27481970-27481989 | None:intergenic | 35.0% | |
| GGTGGAAAAGTTATAGTGTT+TGG | - | chr8_2:27482057-27482076 | Msa1242860:intron | 35.0% | |
| GGAAAAGTTATAGTGTTTGG+AGG | - | chr8_2:27482060-27482079 | Msa1242860:intron | 35.0% | |
| GAAATTGGTAAGGGAAATGA+TGG | - | chr8_2:27482282-27482301 | Msa1242860:intron | 35.0% | |
| AACTCAGTTATCAAAAGCTC+AGG | + | chr8_2:27482330-27482349 | None:intergenic | 35.0% | |
| ATGGAGAATTCTTGAGGAAT+AGG | - | chr8_2:27482412-27482431 | Msa1242860:CDS | 35.0% | |
| TGGAGAATTCTTGAGGAATA+GGG | - | chr8_2:27482413-27482432 | Msa1242860:CDS | 35.0% | |
| TAATTGTGCAGGAGAAGAAA+AGG | - | chr8_2:27482562-27482581 | Msa1242860:CDS | 35.0% | |
| AGTTCAAATTCCATAGATCG+CGG | - | chr8_2:27482593-27482612 | Msa1242860:intron | 35.0% | |
| TAAATTGCCTTCAAACGTCT+GGG | - | chr8_2:27482663-27482682 | Msa1242860:intron | 35.0% | |
| CATACTATCAAGCTCAAAGT+TGG | - | chr8_2:27482695-27482714 | Msa1242860:CDS | 35.0% | |
| TGGATAGGCCTAATCATGTT+TGG | - | chr8_2:27481159-27481178 | Msa1242860:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr8_2:27481160-27481179 | Msa1242860:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr8_2:27481424-27481443 | Msa1242860:intron | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr8_2:27481663-27481682 | Msa1242860:intron | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr8_2:27481713-27481732 | Msa1242860:intron | 40.0% | |
| GCTTCTTTATTACTACCAGG+TGG | - | chr8_2:27481817-27481836 | Msa1242860:intron | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr8_2:27482012-27482031 | Msa1242860:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr8_2:27482114-27482133 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr8_2:27482252-27482271 | Msa1242860:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr8_2:27482253-27482272 | Msa1242860:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr8_2:27482272-27482291 | Msa1242860:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr8_2:27482273-27482292 | Msa1242860:intron | 40.0% | |
| CAGTTATCAAAAGCTCAGGT+GGG | + | chr8_2:27482326-27482345 | None:intergenic | 40.0% | |
| TCAGTTATCAAAAGCTCAGG+TGG | + | chr8_2:27482327-27482346 | None:intergenic | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr8_2:27482662-27482681 | Msa1242860:intron | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr8_2:27482736-27482755 | Msa1242860:CDS | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr8_2:27482737-27482756 | Msa1242860:CDS | 40.0% | |
| TGGATAGGCCTAATCATGTT+TGG | - | chr8_2:27481159-27481178 | Msa1242860:CDS | 40.0% | |
| GGATAGGCCTAATCATGTTT+GGG | - | chr8_2:27481160-27481179 | Msa1242860:CDS | 40.0% | |
| AAATGCATGCCGTATCCAAA+TGG | - | chr8_2:27481424-27481443 | Msa1242860:intron | 40.0% | |
| TGAAAAGATCATGAAGGCAG+TGG | - | chr8_2:27481663-27481682 | Msa1242860:intron | 40.0% | |
| TCTATGGTTATGGAGGAACT+GGG | - | chr8_2:27481713-27481732 | Msa1242860:intron | 40.0% | |
| GCTTCTTTATTACTACCAGG+TGG | - | chr8_2:27481817-27481836 | Msa1242860:intron | 40.0% | |
| AGAGATATCATGAGTGTAGG+AGG | - | chr8_2:27482012-27482031 | Msa1242860:intron | 40.0% | |
| ATGTCTGATCTATTTGCTCC+TGG | + | chr8_2:27482114-27482133 | None:intergenic | 40.0% | |
| TCTGAATGGATCTTAAGGGT+TGG | - | chr8_2:27482252-27482271 | Msa1242860:intron | 40.0% | |
| CTGAATGGATCTTAAGGGTT+GGG | - | chr8_2:27482253-27482272 | Msa1242860:intron | 40.0% | |
| TGGGAATGGAGAAATTGGTA+AGG | - | chr8_2:27482272-27482291 | Msa1242860:intron | 40.0% | |
| GGGAATGGAGAAATTGGTAA+GGG | - | chr8_2:27482273-27482292 | Msa1242860:intron | 40.0% | |
| CAGTTATCAAAAGCTCAGGT+GGG | + | chr8_2:27482326-27482345 | None:intergenic | 40.0% | |
| TCAGTTATCAAAAGCTCAGG+TGG | + | chr8_2:27482327-27482346 | None:intergenic | 40.0% | |
| CTAAATTGCCTTCAAACGTC+TGG | - | chr8_2:27482662-27482681 | Msa1242860:intron | 40.0% | |
| AAGAAATCTAGACCAAGCTG+AGG | - | chr8_2:27482736-27482755 | Msa1242860:CDS | 40.0% | |
| AGAAATCTAGACCAAGCTGA+GGG | - | chr8_2:27482737-27482756 | Msa1242860:CDS | 40.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr8_2:27481188-27481207 | Msa1242860:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr8_2:27481697-27481716 | Msa1242860:intron | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr8_2:27481714-27481733 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr8_2:27481712-27481731 | Msa1242860:intron | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr8_2:27481790-27481809 | Msa1242860:intron | 45.0% | |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr8_2:27481871-27481890 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr8_2:27481877-27481896 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr8_2:27482157-27482176 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr8_2:27482258-27482277 | Msa1242860:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr8_2:27482267-27482286 | Msa1242860:intron | 45.0% | |
| CATTACATAAGCCCTCAGCT+TGG | + | chr8_2:27482751-27482770 | None:intergenic | 45.0% | |
| CAAGCTGAGGGCTTATGTAA+TGG | - | chr8_2:27482749-27482768 | Msa1242860:CDS | 45.0% | |
| TCATGGAAGTTCCTCTCTGA+TGG | - | chr8_2:27481188-27481207 | Msa1242860:CDS | 45.0% | |
| ! | GGTGGTGTCTTTTTCCTCTA+TGG | - | chr8_2:27481697-27481716 | Msa1242860:intron | 45.0% |
| CAGTTCCTCCATAACCATAG+AGG | + | chr8_2:27481714-27481733 | None:intergenic | 45.0% | |
| CTCTATGGTTATGGAGGAAC+TGG | - | chr8_2:27481712-27481731 | Msa1242860:intron | 45.0% | |
| GTTCTCACTGTTGCAACAAG+TGG | - | chr8_2:27481790-27481809 | Msa1242860:intron | 45.0% | |
| GATGATCGAAGTGTAGGAAC+TGG | + | chr8_2:27481871-27481890 | None:intergenic | 45.0% | |
| CAGATCGATGATCGAAGTGT+AGG | + | chr8_2:27481877-27481896 | None:intergenic | 45.0% | |
| GCAATGGTCCCAAATGTATG+AGG | + | chr8_2:27482157-27482176 | None:intergenic | 45.0% | |
| TGGATCTTAAGGGTTGGGAA+TGG | - | chr8_2:27482258-27482277 | Msa1242860:intron | 45.0% | |
| AGGGTTGGGAATGGAGAAAT+TGG | - | chr8_2:27482267-27482286 | Msa1242860:intron | 45.0% | |
| CATTACATAAGCCCTCAGCT+TGG | + | chr8_2:27482751-27482770 | None:intergenic | 45.0% | |
| CAAGCTGAGGGCTTATGTAA+TGG | - | chr8_2:27482749-27482768 | Msa1242860:CDS | 45.0% | |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr8_2:27481676-27481695 | Msa1242860:intron | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr8_2:27481835-27481854 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr8_2:27481951-27481970 | Msa1242860:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr8_2:27482093-27482112 | Msa1242860:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr8_2:27482105-27482124 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr8_2:27482360-27482379 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr8_2:27482606-27482625 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr8_2:27482673-27482692 | None:intergenic | 50.0% | |
| AAGGCAGTGGCAAAGCAACA+AGG | - | chr8_2:27481676-27481695 | Msa1242860:intron | 50.0% | |
| GAATGTGCAGTTCTTCCACC+TGG | + | chr8_2:27481835-27481854 | None:intergenic | 50.0% | |
| ! | TATATGGGATGAGGCGCCAA+TGG | - | chr8_2:27481951-27481970 | Msa1242860:intron | 50.0% |
| CAAATACTGCCAGTTGTGCC+AGG | - | chr8_2:27482093-27482112 | Msa1242860:intron | 50.0% | |
| CTATTTGCTCCTGGCACAAC+TGG | + | chr8_2:27482105-27482124 | None:intergenic | 50.0% | |
| GCTTGGACGATTGCAGCAAT+AGG | + | chr8_2:27482360-27482379 | None:intergenic | 50.0% | |
| AGTTGCTTCACCGCGATCTA+TGG | + | chr8_2:27482606-27482625 | None:intergenic | 50.0% | |
| TAGGCAACCCAGACGTTTGA+AGG | + | chr8_2:27482673-27482692 | None:intergenic | 50.0% | |
| AGGAGGCTCACACGAAATCC+AGG | - | chr8_2:27481227-27481246 | Msa1242860:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr8_2:27481679-27481698 | Msa1242860:intron | 55.0% | |
| AGGAGGCTCACACGAAATCC+AGG | - | chr8_2:27481227-27481246 | Msa1242860:CDS | 55.0% | |
| GCAGTGGCAAAGCAACAAGG+TGG | - | chr8_2:27481679-27481698 | Msa1242860:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 27481158 | 27482784 | 27481158 | ID=Msa1242860;Name=Msa1242860 |
| chr8_2 | mRNA | 27481158 | 27482784 | 27481158 | ID=Msa1242860-mRNA-1;Parent=Msa1242860;Name=Msa1242860-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0.66|0.5|4|0|247 |
| chr8_2 | exon | 27482694 | 27482784 | 27482694 | ID=Msa1242860-mRNA-1:exon:9687;Parent=Msa1242860-mRNA-1 |
| chr8_2 | exon | 27482392 | 27482610 | 27482392 | ID=Msa1242860-mRNA-1:exon:9686;Parent=Msa1242860-mRNA-1 |
| chr8_2 | exon | 27481441 | 27481659 | 27481441 | ID=Msa1242860-mRNA-1:exon:9685;Parent=Msa1242860-mRNA-1 |
| chr8_2 | exon | 27481158 | 27481369 | 27481158 | ID=Msa1242860-mRNA-1:exon:9684;Parent=Msa1242860-mRNA-1 |
| chr8_2 | CDS | 27482694 | 27482784 | 27482694 | ID=Msa1242860-mRNA-1:cds;Parent=Msa1242860-mRNA-1 |
| chr8_2 | CDS | 27482392 | 27482610 | 27482392 | ID=Msa1242860-mRNA-1:cds;Parent=Msa1242860-mRNA-1 |
| chr8_2 | CDS | 27481441 | 27481659 | 27481441 | ID=Msa1242860-mRNA-1:cds;Parent=Msa1242860-mRNA-1 |
| chr8_2 | CDS | 27481158 | 27481369 | 27481158 | ID=Msa1242860-mRNA-1:cds;Parent=Msa1242860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
