Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824160 | XP_003617643.1 | 98.628 | 583 | 7 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824160 | sp|Q9FLP0|MA651_ARATH | 78.608 | 589 | 118 | 6 | 1 | 583 | 1 | 587 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824160 | G7K8P9 | 98.628 | 583 | 7 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0655860 | Msa0824160 | 0.823332 | 1.466359e-53 | -8.615850e-47 |
| Msa0824160 | Msa0824170 | 0.818718 | 1.693544e-52 | -8.615850e-47 |
| Msa0824160 | Msa1147790 | 0.836938 | 6.976184e-57 | -8.615850e-47 |
| Msa0824160 | Msa1196960 | 0.840339 | 9.228530e-58 | -8.615850e-47 |
| Msa0824160 | Msa1240030 | 0.813730 | 2.207648e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824160 | MtrunA17_Chr5g0444881 | 98.628 | 583 | 7 | 1 | 1 | 583 | 1 | 582 | 0.0 | 1178 |
| Msa0824160 | MtrunA17_Chr1g0164981 | 48.896 | 589 | 274 | 8 | 15 | 578 | 16 | 602 | 0.0 | 540 |
| Msa0824160 | MtrunA17_Chr8g0354131 | 50.000 | 566 | 266 | 6 | 15 | 574 | 14 | 568 | 0.0 | 535 |
| Msa0824160 | MtrunA17_Chr1g0188201 | 53.042 | 526 | 237 | 5 | 12 | 536 | 12 | 528 | 2.71e-177 | 519 |
| Msa0824160 | MtrunA17_Chr6g0476051 | 49.652 | 574 | 260 | 12 | 12 | 576 | 13 | 566 | 8.77e-175 | 512 |
| Msa0824160 | MtrunA17_Chr3g0122591 | 44.706 | 595 | 297 | 8 | 13 | 583 | 17 | 603 | 2.47e-166 | 486 |
| Msa0824160 | MtrunA17_Chr7g0245851 | 43.321 | 524 | 284 | 5 | 13 | 536 | 366 | 876 | 4.91e-129 | 403 |
| Msa0824160 | MtrunA17_Chr8g0345241 | 44.444 | 513 | 241 | 9 | 12 | 508 | 12 | 496 | 1.38e-126 | 381 |
| Msa0824160 | MtrunA17_Chr5g0410361 | 53.333 | 75 | 33 | 1 | 248 | 322 | 21 | 93 | 1.80e-17 | 77.8 |
| Msa0824160 | MtrunA17_Chr4g0039561 | 56.140 | 57 | 25 | 0 | 21 | 77 | 141 | 197 | 6.43e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824160 | AT5G55230.3 | 78.608 | 589 | 118 | 6 | 1 | 583 | 1 | 587 | 0.0 | 909 |
| Msa0824160 | AT5G55230.1 | 78.608 | 589 | 118 | 6 | 1 | 583 | 1 | 587 | 0.0 | 909 |
| Msa0824160 | AT5G55230.2 | 74.919 | 618 | 118 | 7 | 1 | 583 | 1 | 616 | 0.0 | 894 |
| Msa0824160 | AT4G26760.1 | 75.514 | 584 | 136 | 3 | 1 | 583 | 1 | 578 | 0.0 | 886 |
| Msa0824160 | AT1G14690.1 | 47.945 | 584 | 281 | 9 | 15 | 578 | 17 | 597 | 6.73e-178 | 516 |
| Msa0824160 | AT1G14690.2 | 47.945 | 584 | 281 | 9 | 15 | 578 | 17 | 597 | 6.73e-178 | 516 |
| Msa0824160 | AT2G01910.1 | 47.315 | 596 | 280 | 9 | 15 | 583 | 17 | 605 | 3.01e-175 | 509 |
| Msa0824160 | AT2G38720.1 | 47.920 | 553 | 271 | 6 | 19 | 568 | 12 | 550 | 1.10e-169 | 493 |
| Msa0824160 | AT2G01910.2 | 47.110 | 571 | 268 | 9 | 40 | 583 | 1 | 564 | 2.19e-163 | 478 |
| Msa0824160 | AT1G27920.1 | 47.228 | 523 | 266 | 6 | 13 | 531 | 17 | 533 | 5.83e-160 | 469 |
| Msa0824160 | AT5G51600.1 | 50.189 | 530 | 253 | 6 | 13 | 538 | 13 | 535 | 7.35e-160 | 474 |
| Msa0824160 | AT3G60840.1 | 42.959 | 561 | 302 | 6 | 13 | 570 | 13 | 558 | 7.06e-144 | 432 |
| Msa0824160 | AT5G62250.2 | 44.146 | 521 | 273 | 8 | 13 | 518 | 7 | 524 | 8.17e-125 | 379 |
| Msa0824160 | AT5G62250.1 | 44.146 | 521 | 273 | 8 | 13 | 518 | 7 | 524 | 8.17e-125 | 379 |
| Msa0824160 | AT1G27920.2 | 47.970 | 394 | 200 | 3 | 13 | 403 | 17 | 408 | 3.89e-120 | 362 |
Find 160 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTGTTGTAGGAAATA+TGG | 0.145024 | 5_3:+63293339 | Msa0824160:intron |
| AGTTTCATTGCTTATGCTTT+TGG | 0.186565 | 5_3:-63294188 | None:intergenic |
| TCTTAGCTTCTGCTATTAAT+TGG | 0.203805 | 5_3:+63296381 | Msa0824160:three_prime_UTR |
| GATATTCTTCAAACTTCTTC+AGG | 0.209572 | 5_3:-63293886 | None:intergenic |
| GATGCTGCTTCCCATGTTTC+TGG | 0.210443 | 5_3:+63296102 | Msa0824160:CDS |
| ATTATGGCATTGATTGATTC+TGG | 0.215257 | 5_3:+63294814 | Msa0824160:CDS |
| GAAGCTCAAAACCCTCTTAT+TGG | 0.235885 | 5_3:+63293206 | Msa0824160:CDS |
| CTCTTCCCATGCACGTGTTT+TGG | 0.242051 | 5_3:-63295560 | None:intergenic |
| CCGTATCAAAAGATGGAAAA+AGG | 0.249870 | 5_3:+63296028 | Msa0824160:CDS |
| TTAATTGAGAAGCTAATTCT+TGG | 0.260019 | 5_3:-63294444 | None:intergenic |
| TCGCTTAATGCTCATCAAAA+TGG | 0.292941 | 5_3:+63295997 | Msa0824160:CDS |
| TCGGCTTAAAGCTTCTTCTT+TGG | 0.293161 | 5_3:-63294890 | None:intergenic |
| CATTGAACCAACTGAATTAC+TGG | 0.310358 | 5_3:+63294840 | Msa0824160:CDS |
| TCGCAGCCTGATAATACTTC+TGG | 0.311689 | 5_3:+63293686 | Msa0824160:intron |
| TTGGAAACTAAGCTCTCATT+AGG | 0.335643 | 5_3:-63296148 | None:intergenic |
| AAAATATGTGGAGAGATAAC+TGG | 0.337379 | 5_3:+63293815 | Msa0824160:CDS |
| CTTGGCGAAAAGGGCTTTGC+TGG | 0.338989 | 5_3:+63293530 | Msa0824160:CDS |
| GCTAACTGGCCTAGCAGGGC+TGG | 0.343030 | 5_3:-63295908 | None:intergenic |
| GTGTGCAGGCCAGGTTGCTC+TGG | 0.344512 | 5_3:+63293164 | Msa0824160:intron |
| TTTAAGCCGAAAAGATATAT+TGG | 0.359716 | 5_3:+63294903 | Msa0824160:CDS |
| CAACTGCAGGTACATCATTA+AGG | 0.363873 | 5_3:-63293847 | None:intergenic |
| ACGGAACCAGAAGCTCCTTT+TGG | 0.365583 | 5_3:+63295877 | Msa0824160:CDS |
| TTATTTGTTGTAGGAAATAT+GGG | 0.367694 | 5_3:+63293340 | Msa0824160:intron |
| TTTGAACCAAAAGGAGCTTC+TGG | 0.368215 | 5_3:-63295883 | None:intergenic |
| GCACACCAGTAGAATCATTC+AGG | 0.370135 | 5_3:-63294162 | None:intergenic |
| ATAGTTCCAGAAGTATTATC+AGG | 0.372534 | 5_3:-63293692 | None:intergenic |
| TAATAGCAGAAGCTAAGATT+TGG | 0.377886 | 5_3:-63296376 | None:intergenic |
| TATTCCTGGTGCCCTTGCTC+TGG | 0.378206 | 5_3:+63294561 | Msa0824160:CDS |
| CTTCAAACTTCTTCAGGGTC+AGG | 0.381765 | 5_3:-63293880 | None:intergenic |
| AGAGAATGGTTACCTGGGTT+AGG | 0.384538 | 5_3:-63292010 | None:intergenic |
| TTCATACAAAAGGGCTTCAA+TGG | 0.388223 | 5_3:-63296319 | None:intergenic |
| AATTGATCTGTGGAATCTAA+TGG | 0.391031 | 5_3:+63294465 | Msa0824160:CDS |
| ACCTTCTTAGCAGCGCTAAC+TGG | 0.396718 | 5_3:-63295922 | None:intergenic |
| GTCGATGAAGTCACTATTCC+TGG | 0.397495 | 5_3:+63294547 | Msa0824160:CDS |
| TCAAACAGTTTCCTTTCCTC+TGG | 0.399403 | 5_3:-63294496 | None:intergenic |
| GTAGGTGGCCCTCGTGCTAA+TGG | 0.403729 | 5_3:+63295943 | Msa0824160:CDS |
| ATACTGGTAAATAAAATTCC+TGG | 0.418500 | 5_3:+63295383 | Msa0824160:CDS |
| ACAAAAGGAAGAAAGGATAA+AGG | 0.418529 | 5_3:+63293763 | Msa0824160:CDS |
| CTAACTGGCCTAGCAGGGCT+GGG | 0.418614 | 5_3:-63295907 | None:intergenic |
| TCATCCTGCTTGCTTTAAGC+TGG | 0.421882 | 5_3:-63294702 | None:intergenic |
| GCAGCGCTAACTGGCCTAGC+AGG | 0.426792 | 5_3:-63295913 | None:intergenic |
| ACATAATTCACAGGAGCAAC+TGG | 0.432791 | 5_3:-63296063 | None:intergenic |
| TCTATCAGCTCTTGGCGAAA+AGG | 0.434662 | 5_3:+63293520 | Msa0824160:CDS |
| AGCTCTCATTAGGGTGATGT+TGG | 0.435737 | 5_3:-63296138 | None:intergenic |
| TCTACACTTCTATCAGCTCT+TGG | 0.437972 | 5_3:+63293512 | Msa0824160:CDS |
| AGCAGAGAAAGCTCGGATAC+TGG | 0.438832 | 5_3:+63295367 | Msa0824160:CDS |
| CTATCAGCTCTTGGCGAAAA+GGG | 0.441089 | 5_3:+63293521 | Msa0824160:CDS |
| GAGAATGGTTACCTGGGTTA+GGG | 0.444225 | 5_3:-63292009 | None:intergenic |
| GCCAGTTAGCGCTGCTAAGA+AGG | 0.445166 | 5_3:+63295921 | Msa0824160:CDS |
| ATATTCTTCAAACTTCTTCA+GGG | 0.448106 | 5_3:-63293885 | None:intergenic |
| TCAGTTAGAGCAGGAGTGCT+TGG | 0.449739 | 5_3:+63293406 | Msa0824160:CDS |
| GACAGAAGCTGAGATGTTAC+AGG | 0.452738 | 5_3:-63294527 | None:intergenic |
| TGCCATGCTTAGGCATGAAC+GGG | 0.453195 | 5_3:+63295642 | Msa0824160:CDS |
| TCATTAGGGTGATGTTGGGA+TGG | 0.454940 | 5_3:-63296133 | None:intergenic |
| TGCTGCAAGAGAGAAGATTA+TGG | 0.455462 | 5_3:+63294798 | Msa0824160:CDS |
| GCTGGCTTGAGGATTATAAT+CGG | 0.456304 | 5_3:+63294965 | Msa0824160:CDS |
| CAGTAGAATCATTCAGGCTT+GGG | 0.464227 | 5_3:-63294156 | None:intergenic |
| TATTGGACAAGGTTGAGAAA+TGG | 0.465695 | 5_3:+63294920 | Msa0824160:CDS |
| AGACAGAGAGCGTACAGTGC+GGG | 0.466643 | 5_3:-63291802 | None:intergenic |
| GCTTTGTTTGGCAGAGTGAC+AGG | 0.467364 | 5_3:+63294044 | Msa0824160:intron |
| AACTGAATTACTGGCTGACA+TGG | 0.467925 | 5_3:+63294849 | Msa0824160:CDS |
| TGAGCTTCAAGAACTTCAAA+AGG | 0.471280 | 5_3:+63293913 | Msa0824160:CDS |
| GCAGAGTGACAGGTTGCAAA+AGG | 0.476336 | 5_3:+63294054 | Msa0824160:intron |
| TGGTGAAAGTGATGAGGAAC+GGG | 0.477404 | 5_3:+63293370 | Msa0824160:CDS |
| TAAAACTGTGTTAGCAAGCC+TGG | 0.479637 | 5_3:-63294215 | None:intergenic |
| TGCTCATGTAGAAATAGATT+CGG | 0.480577 | 5_3:+63294774 | Msa0824160:CDS |
| CATGATCTATGTGCTGTCCT+TGG | 0.481657 | 5_3:+63294100 | Msa0824160:CDS |
| TGCCATAGCTGTTCAAGTGC+TGG | 0.483432 | 5_3:-63293740 | None:intergenic |
| TGTATTAGTAAACCTCCAAA+TGG | 0.486648 | 5_3:-63296284 | None:intergenic |
| TCAAGAACTTCAAAAGGAAA+AGG | 0.487196 | 5_3:+63293919 | Msa0824160:CDS |
| CATTAGGGTGATGTTGGGAT+GGG | 0.488018 | 5_3:-63296132 | None:intergenic |
| GGTGGCCCTCGTGCTAATGG+AGG | 0.488432 | 5_3:+63295946 | Msa0824160:CDS |
| CCAGTAGAATCATTCAGGCT+TGG | 0.490736 | 5_3:-63294157 | None:intergenic |
| AACAGTTTCCTTTCCTCTGG+AGG | 0.490807 | 5_3:-63294493 | None:intergenic |
| GTGGCCCTCGTGCTAATGGA+GGG | 0.494034 | 5_3:+63295947 | Msa0824160:CDS |
| TGCTCTGGATCTGATTGAGC+AGG | 0.502895 | 5_3:+63294576 | Msa0824160:CDS |
| AGGTTGCTCTGGAACTTCAA+TGG | 0.509729 | 5_3:+63293175 | Msa0824160:exon |
| GAGCTTTCTCTGCTCGCTTG+AGG | 0.510478 | 5_3:-63295358 | None:intergenic |
| ATGCAAAACAGGATGACAAC+AGG | 0.511644 | 5_3:+63295306 | Msa0824160:intron |
| AGATCCAGAGCAAGGGCACC+AGG | 0.513680 | 5_3:-63294565 | None:intergenic |
| GACATGGCCACATAATTCAC+AGG | 0.513896 | 5_3:-63296072 | None:intergenic |
| TATGGCAACAAAAGGAAGAA+AGG | 0.517548 | 5_3:+63293756 | Msa0824160:CDS |
| TCTATGTGCTGTCCTTGGTA+TGG | 0.521422 | 5_3:+63294105 | Msa0824160:CDS |
| TGAACAGCTATGGCAACAAA+AGG | 0.521810 | 5_3:+63293748 | Msa0824160:CDS |
| CTACAAAGATGAATTGAGGT+TGG | 0.523993 | 5_3:-63296167 | None:intergenic |
| TGCAGCTTTGGTTGATACAT+TGG | 0.524917 | 5_3:+63295534 | Msa0824160:intron |
| TAATACTTCTGGAACTATCA+AGG | 0.525873 | 5_3:+63293697 | Msa0824160:CDS |
| TGGAAACTAAGCTCTCATTA+GGG | 0.526936 | 5_3:-63296147 | None:intergenic |
| TGGTTGCCAAAACACGTGCA+TGG | 0.528372 | 5_3:+63295554 | Msa0824160:CDS |
| GATGCTTCTTCAGTTAGAGC+AGG | 0.532796 | 5_3:+63293397 | Msa0824160:CDS |
| ATGCCATGCTTAGGCATGAA+CGG | 0.537364 | 5_3:+63295641 | Msa0824160:CDS |
| GAGAGCGTACAGTGCGGGGA+TGG | 0.538251 | 5_3:-63291797 | None:intergenic |
| CATGTGTTCTCTCCAATAAG+AGG | 0.538884 | 5_3:-63293218 | None:intergenic |
| GCTTAAAGCAAGCAGGATGA+AGG | 0.542110 | 5_3:+63294705 | Msa0824160:CDS |
| AGCAGGTCCGTATCAAAAGA+TGG | 0.542218 | 5_3:+63296021 | Msa0824160:CDS |
| TGGGTTCAGCACCAGAAACA+TGG | 0.543852 | 5_3:-63296113 | None:intergenic |
| CTTCTCAATTAATTGATCTG+TGG | 0.545500 | 5_3:+63294455 | Msa0824160:CDS |
| CCAAGCCTGAATGATTCTAC+TGG | 0.547090 | 5_3:+63294157 | Msa0824160:CDS |
| GGTTGCCAAAACACGTGCAT+GGG | 0.547396 | 5_3:+63295555 | Msa0824160:CDS |
| TTCCCGTTCATGCCTAAGCA+TGG | 0.548978 | 5_3:-63295644 | None:intergenic |
| GCTCTCATTAGGGTGATGTT+GGG | 0.549210 | 5_3:-63296137 | None:intergenic |
| GGAGGTTTACTAATACATGT+TGG | 0.549572 | 5_3:+63296290 | Msa0824160:three_prime_UTR |
| TCAAGCGAGCAGAGAAAGCT+CGG | 0.552310 | 5_3:+63295360 | Msa0824160:CDS |
| TTCCTTGTTGAAGAAGCTGC+AGG | 0.552930 | 5_3:+63293244 | Msa0824160:CDS |
| CTGAGATGTTACAGGTAACA+TGG | 0.553383 | 5_3:-63294519 | None:intergenic |
| GTTCAAAACCCAGCCCTGCT+AGG | 0.553563 | 5_3:+63295899 | Msa0824160:CDS |
| CACCAGCACTTGAACAGCTA+TGG | 0.556593 | 5_3:+63293738 | Msa0824160:CDS |
| TTGAACATGCTGCAAAGTCA+CGG | 0.559534 | 5_3:+63293447 | Msa0824160:CDS |
| ATGCTCATCAAAATGGAAGC+AGG | 0.564607 | 5_3:+63296004 | Msa0824160:CDS |
| CTGGCTTGAGGATTATAATC+GGG | 0.565938 | 5_3:+63294966 | Msa0824160:CDS |
| TAGAATCATTCAGGCTTGGG+TGG | 0.567300 | 5_3:-63294153 | None:intergenic |
| CAGCATGTGAAGAAGAGAGC+TGG | 0.571216 | 5_3:+63294947 | Msa0824160:CDS |
| TGGATACTCCTCCAGAGGAA+AGG | 0.571507 | 5_3:+63294485 | Msa0824160:CDS |
| GTTGTAGGAAATATGGGATG+AGG | 0.572584 | 5_3:+63293346 | Msa0824160:intron |
| TAGATGAATATGCCATGCTT+AGG | 0.573007 | 5_3:+63295632 | Msa0824160:CDS |
| CATGGCATATTCATCTAACA+TGG | 0.574080 | 5_3:-63295626 | None:intergenic |
| TAAGCAATGAAACTCTAGCC+AGG | 0.574133 | 5_3:+63294197 | Msa0824160:CDS |
| TGAACATGCTGCAAAGTCAC+GGG | 0.575369 | 5_3:+63293448 | Msa0824160:CDS |
| TTGACCAGCTTAAAGCAAGC+AGG | 0.578831 | 5_3:+63294698 | Msa0824160:CDS |
| TAGGAAATATGGGATGAGGT+TGG | 0.583335 | 5_3:+63293350 | Msa0824160:intron |
| CGTGCTAATGGAGGGGCCAA+CGG | 0.585471 | 5_3:+63295955 | Msa0824160:CDS |
| TTGGTGAAAGTGATGAGGAA+CGG | 0.586059 | 5_3:+63293369 | Msa0824160:CDS |
| GCTCAATCAGATCCAGAGCA+AGG | 0.588196 | 5_3:-63294573 | None:intergenic |
| AAATATGTGGAGAGATAACT+GGG | 0.595369 | 5_3:+63293816 | Msa0824160:CDS |
| CTCAATCAGATCCAGAGCAA+GGG | 0.597501 | 5_3:-63294572 | None:intergenic |
| CAGCGCTAACTGGCCTAGCA+GGG | 0.597807 | 5_3:-63295912 | None:intergenic |
| AGGTCTGACTCATCAACTGC+AGG | 0.598747 | 5_3:-63293860 | None:intergenic |
| TGAAGAAGAGAGCTGGCTTG+AGG | 0.599005 | 5_3:+63294954 | Msa0824160:CDS |
| AACGCTACAAAGATGAATTG+AGG | 0.599640 | 5_3:-63296171 | None:intergenic |
| CCGAAAAGATATATTGGACA+AGG | 0.599791 | 5_3:+63294909 | Msa0824160:CDS |
| ATGTGTTCTCTCCAATAAGA+GGG | 0.599871 | 5_3:-63293217 | None:intergenic |
| ATTGAAGTTCCAGAGCAACC+TGG | 0.600800 | 5_3:-63293173 | None:intergenic |
| CTTGGATGTGTACAAGAGAA+AGG | 0.603877 | 5_3:+63293424 | Msa0824160:CDS |
| TCATCTAACATGGCAAGAAG+AGG | 0.607995 | 5_3:-63295616 | None:intergenic |
| TGGCCCTCGTGCTAATGGAG+GGG | 0.609883 | 5_3:+63295948 | Msa0824160:CDS |
| GACAGAGAGCGTACAGTGCG+GGG | 0.610259 | 5_3:-63291801 | None:intergenic |
| GATATGTCATTCACGTATGA+CGG | 0.613269 | 5_3:+63295589 | Msa0824160:CDS |
| GGGTTCAGCACCAGAAACAT+GGG | 0.613771 | 5_3:-63296112 | None:intergenic |
| TACCTGCAGCTTCTTCAACA+AGG | 0.618085 | 5_3:-63293246 | None:intergenic |
| TTAAGCGATAGCCGTCGGCT+AGG | 0.622863 | 5_3:-63295982 | None:intergenic |
| ATGTCAGCCAGTAATTCAGT+TGG | 0.624296 | 5_3:-63294847 | None:intergenic |
| ATTTCAAGAGCAGCAAAGCA+CGG | 0.626904 | 5_3:+63295858 | Msa0824160:CDS |
| TTGGCCCCTCCATTAGCACG+AGG | 0.628327 | 5_3:-63295952 | None:intergenic |
| CTTCTTTAGTACAGTAACTG+AGG | 0.629711 | 5_3:+63294129 | Msa0824160:CDS |
| AGTTGCTCCTGTGAATTATG+TGG | 0.632255 | 5_3:+63296065 | Msa0824160:CDS |
| GTTAGCGCTGCTAAGAAGGT+AGG | 0.647545 | 5_3:+63295925 | Msa0824160:CDS |
| CCGTCGGCTAGGAGTACCGT+TGG | 0.647840 | 5_3:-63295971 | None:intergenic |
| AACAGGTATAATGCAAGCAG+AGG | 0.650748 | 5_3:+63295323 | Msa0824160:CDS |
| GAGCATTAAGCGATAGCCGT+CGG | 0.654471 | 5_3:-63295987 | None:intergenic |
| AAGACAGAGAGCGTACAGTG+CGG | 0.657931 | 5_3:-63291803 | None:intergenic |
| TGAGGTTGGTGAAAGTGATG+AGG | 0.659384 | 5_3:+63293364 | Msa0824160:CDS |
| TCTAATGGATACTCCTCCAG+AGG | 0.660216 | 5_3:+63294480 | Msa0824160:CDS |
| TGGCCCCTCCATTAGCACGA+GGG | 0.663430 | 5_3:-63295951 | None:intergenic |
| CTTATTGGAGAGAACACATG+TGG | 0.664987 | 5_3:+63293221 | Msa0824160:CDS |
| AACTTCACAAACCCTAACCC+AGG | 0.674699 | 5_3:+63291998 | Msa0824160:five_prime_UTR |
| GAACTGTTCTGAGCTGTGTG+TGG | 0.681297 | 5_3:+63296253 | Msa0824160:three_prime_UTR |
| TACTAAAGAAGTCCATACCA+AGG | 0.685608 | 5_3:-63294117 | None:intergenic |
| AGCGCTGCTAAGAAGGTAGG+TGG | 0.685968 | 5_3:+63295928 | Msa0824160:CDS |
| CAAGTGACAAGCAATTAGAG+AGG | 0.691680 | 5_3:+63296231 | Msa0824160:three_prime_UTR |
| CCAACGGTACTCCTAGCCGA+CGG | 0.770958 | 5_3:+63295971 | Msa0824160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTATATACAATTAA+TGG | + | chr5_3:63292327-63292346 | Msa0824160:intron | 10.0% |
| !! | CATAATTTAGAAAAAAAATT+TGG | + | chr5_3:63292378-63292397 | Msa0824160:intron | 10.0% |
| !!! | ATTTCTGATTTTTTTTTTGT+GGG | + | chr5_3:63293141-63293160 | Msa0824160:intron | 15.0% |
| !! | AAATGAATTCAAAATGATAA+AGG | - | chr5_3:63294371-63294390 | None:intergenic | 15.0% |
| !!! | TTATTTTGTTCTTTTTATGA+AGG | + | chr5_3:63294654-63294673 | Msa0824160:intron | 15.0% |
| !! | AAAAAAAAAAAAATGCACAA+GGG | - | chr5_3:63295004-63295023 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAATGCACA+AGG | - | chr5_3:63295005-63295024 | None:intergenic | 15.0% |
| !! | TTAAATCCAAAATGATATAT+TGG | - | chr5_3:63295266-63295285 | None:intergenic | 15.0% |
| !!! | TCATTTACTTTTTCTTTGTT+TGG | + | chr5_3:63292184-63292203 | Msa0824160:intron | 20.0% |
| !! | TTATGGTTATATATGCTTAA+TGG | + | chr5_3:63292283-63292302 | Msa0824160:intron | 20.0% |
| !! | AAACTAACAAATTAAACCAA+AGG | - | chr5_3:63292420-63292439 | None:intergenic | 20.0% |
| !!! | GTTAGTTTTATGTATTGATA+TGG | + | chr5_3:63292432-63292451 | Msa0824160:intron | 20.0% |
| !!! | TGTATTGATATGGATAATTT+AGG | + | chr5_3:63292442-63292461 | Msa0824160:intron | 20.0% |
| !!! | GTATTGATATGGATAATTTA+GGG | + | chr5_3:63292443-63292462 | Msa0824160:intron | 20.0% |
| !! | AAAAACAAGATTAAAACAAG+CGG | - | chr5_3:63292563-63292582 | None:intergenic | 20.0% |
| !! | TATAGTATACAATGTGAATT+CGG | - | chr5_3:63292834-63292853 | None:intergenic | 20.0% |
| !! | AATTCACATTGTATACTATA+TGG | + | chr5_3:63292834-63292853 | Msa0824160:intron | 20.0% |
| !! | AAAAGACAAAAAAGTAAAAG+AGG | - | chr5_3:63292932-63292951 | None:intergenic | 20.0% |
| !!! | TTATACAGTAACTTTGTTTT+TGG | + | chr5_3:63292960-63292979 | Msa0824160:intron | 20.0% |
| !!! | AAGAGATTTTTTTATCTGTT+GGG | + | chr5_3:63293103-63293122 | Msa0824160:intron | 20.0% |
| !!! | CATTTCTGATTTTTTTTTTG+TGG | + | chr5_3:63293140-63293159 | Msa0824160:intron | 20.0% |
| !!! | TTTCTGATTTTTTTTTTGTG+GGG | + | chr5_3:63293142-63293161 | Msa0824160:intron | 20.0% |
| !!! | ATGTTATCTTTATTTGTTGT+AGG | + | chr5_3:63293331-63293350 | Msa0824160:intron | 20.0% |
| !!! | TTTATTTGTTGTAGGAAATA+TGG | + | chr5_3:63293339-63293358 | Msa0824160:intron | 20.0% |
| !!! | TTATTTGTTGTAGGAAATAT+GGG | + | chr5_3:63293340-63293359 | Msa0824160:intron | 20.0% |
| !!! | ATTTTGAATTCATTTCTGAT+TGG | + | chr5_3:63294376-63294395 | Msa0824160:intron | 20.0% |
| !! | TAATATGTTAGCATAAGTTA+TGG | - | chr5_3:63294637-63294656 | None:intergenic | 20.0% |
| !!! | AAGCTAAAATTTGGTAATTT+CGG | - | chr5_3:63295199-63295218 | None:intergenic | 20.0% |
| !! | TTAATAATAACAGTATCTGA+TGG | - | chr5_3:63295434-63295453 | None:intergenic | 20.0% |
| !!! | AGAATTAACATTGTTTCTTT+TGG | + | chr5_3:63295505-63295524 | Msa0824160:intron | 20.0% |
| !!! | ATATTACTAGTTACTGTTTT+AGG | + | chr5_3:63296197-63296216 | Msa0824160:three_prime_UTR | 20.0% |
| !! | TCTTTTTGCTTACTTCTTAA+TGG | + | chr5_3:63292159-63292178 | Msa0824160:intron | 25.0% |
| !!! | CTTAATTTTTGAAGATCCTT+TGG | + | chr5_3:63292401-63292420 | Msa0824160:intron | 25.0% |
| ! | ATTTAGTACATCTGATTCTA+GGG | - | chr5_3:63292633-63292652 | None:intergenic | 25.0% |
| ! | AATTTAGTACATCTGATTCT+AGG | - | chr5_3:63292634-63292653 | None:intergenic | 25.0% |
| ! | AAAACAAAGCAAAAGACAAA+AGG | - | chr5_3:63292672-63292691 | None:intergenic | 25.0% |
| !!! | TTTTCGATTTGTTGAAATCA+TGG | + | chr5_3:63292699-63292718 | Msa0824160:intron | 25.0% |
| !! | TAGCTTTTTGTAAAATCAAC+TGG | + | chr5_3:63292742-63292761 | Msa0824160:intron | 25.0% |
| !!! | GAAGAGATTTTTTTATCTGT+TGG | + | chr5_3:63293102-63293121 | Msa0824160:intron | 25.0% |
| ! | ACATAAACCTATTAATCCAT+AGG | - | chr5_3:63293315-63293334 | None:intergenic | 25.0% |
| ! | TCACAGATTCAAAAAATATG+TGG | + | chr5_3:63293803-63293822 | Msa0824160:CDS | 25.0% |
| ! | ATATTCTTCAAACTTCTTCA+GGG | - | chr5_3:63293888-63293907 | None:intergenic | 25.0% |
| !! | TCAAAAGGAAAAGGTAATTT+TGG | + | chr5_3:63293928-63293947 | Msa0824160:intron | 25.0% |
| ! | GTTAGGTAAATGATATCAAA+TGG | - | chr5_3:63293999-63294018 | None:intergenic | 25.0% |
| !!! | TTTTCTTACATTGCTTTGTT+TGG | + | chr5_3:63294032-63294051 | Msa0824160:intron | 25.0% |
| ! | TTAATTGAGAAGCTAATTCT+TGG | - | chr5_3:63294447-63294466 | None:intergenic | 25.0% |
| !! | CATCTGAAGTTTAAAAGTTT+GGG | + | chr5_3:63294609-63294628 | Msa0824160:intron | 25.0% |
| ! | TTTAAGCCGAAAAGATATAT+TGG | + | chr5_3:63294903-63294922 | Msa0824160:CDS | 25.0% |
| !! | ATTTGGTAATTTCGGAAATA+TGG | - | chr5_3:63295191-63295210 | None:intergenic | 25.0% |
| !! | GTTTGTCCAATATATCATTT+TGG | + | chr5_3:63295257-63295276 | Msa0824160:intron | 25.0% |
| ! | ATACTGGTAAATAAAATTCC+TGG | + | chr5_3:63295383-63295402 | Msa0824160:CDS | 25.0% |
| ! | AATAAAATTCCTGGTATGTA+TGG | + | chr5_3:63295392-63295411 | Msa0824160:intron | 25.0% |
| ! | ACAAAAAGATGCTACATTAT+TGG | + | chr5_3:63295481-63295500 | Msa0824160:intron | 25.0% |
| !! | ACCTGTATTTTCATACAAAA+GGG | - | chr5_3:63296331-63296350 | None:intergenic | 25.0% |
| !! | TACCTGTATTTTCATACAAA+AGG | - | chr5_3:63296332-63296351 | None:intergenic | 25.0% |
| TAGGTATGAGTATAGATCAA+AGG | - | chr5_3:63292051-63292070 | None:intergenic | 30.0% | |
| GAGAAAAAGAAGAAGTAGAT+AGG | - | chr5_3:63292070-63292089 | None:intergenic | 30.0% | |
| ! | TAATCAAAGTCAGTGTTGAA+AGG | - | chr5_3:63292245-63292264 | None:intergenic | 30.0% |
| CATAATTGAATGCAAAGCTA+AGG | - | chr5_3:63292268-63292287 | None:intergenic | 30.0% | |
| !! | CTTAGCTTTGCATTCAATTA+TGG | + | chr5_3:63292266-63292285 | Msa0824160:intron | 30.0% |
| !!! | TTTTGAGTTTGCTTTGACTA+TGG | + | chr5_3:63292498-63292517 | Msa0824160:intron | 30.0% |
| ! | TTTGACTAGTCAAAGACTAA+GGG | - | chr5_3:63292594-63292613 | None:intergenic | 30.0% |
| AAAAGACAAAAGGAAAAAGG+GGG | - | chr5_3:63292662-63292681 | None:intergenic | 30.0% | |
| CAAAAGACAAAAGGAAAAAG+GGG | - | chr5_3:63292663-63292682 | None:intergenic | 30.0% | |
| GCAAAAGACAAAAGGAAAAA+GGG | - | chr5_3:63292664-63292683 | None:intergenic | 30.0% | |
| AGCAAAAGACAAAAGGAAAA+AGG | - | chr5_3:63292665-63292684 | None:intergenic | 30.0% | |
| AAGCTATGCAAAATCATGAT+GGG | - | chr5_3:63292728-63292747 | None:intergenic | 30.0% | |
| AAAGCTATGCAAAATCATGA+TGG | - | chr5_3:63292729-63292748 | None:intergenic | 30.0% | |
| CAAGATTTATCCACTATGTA+GGG | - | chr5_3:63293060-63293079 | None:intergenic | 30.0% | |
| !!! | TTTTTTATCTGTTGGGTTGA+TGG | + | chr5_3:63293110-63293129 | Msa0824160:intron | 30.0% |
| ! | TGATGTACGCTTTTGATAAA+AGG | - | chr5_3:63293586-63293605 | None:intergenic | 30.0% |
| !! | ATAGTTCCAGAAGTATTATC+AGG | - | chr5_3:63293695-63293714 | None:intergenic | 30.0% |
| !! | TAATACTTCTGGAACTATCA+AGG | + | chr5_3:63293697-63293716 | Msa0824160:CDS | 30.0% |
| ACAAAAGGAAGAAAGGATAA+AGG | + | chr5_3:63293763-63293782 | Msa0824160:CDS | 30.0% | |
| AAAATATGTGGAGAGATAAC+TGG | + | chr5_3:63293815-63293834 | Msa0824160:CDS | 30.0% | |
| AAATATGTGGAGAGATAACT+GGG | + | chr5_3:63293816-63293835 | Msa0824160:CDS | 30.0% | |
| GATATTCTTCAAACTTCTTC+AGG | - | chr5_3:63293889-63293908 | None:intergenic | 30.0% | |
| TCAAGAACTTCAAAAGGAAA+AGG | + | chr5_3:63293919-63293938 | Msa0824160:CDS | 30.0% | |
| GCGACTAGATGATATAATAT+TGG | - | chr5_3:63293963-63293982 | None:intergenic | 30.0% | |
| ! | AGTTTCATTGCTTATGCTTT+TGG | - | chr5_3:63294191-63294210 | None:intergenic | 30.0% |
| TGAAAGAAGATAAAAAGCAG+AGG | + | chr5_3:63294242-63294261 | Msa0824160:CDS | 30.0% | |
| AATTTACTTCCAAGTGTGAT+AGG | - | chr5_3:63294346-63294365 | None:intergenic | 30.0% | |
| CTTCTCAATTAATTGATCTG+TGG | + | chr5_3:63294455-63294474 | Msa0824160:CDS | 30.0% | |
| AATTGATCTGTGGAATCTAA+TGG | + | chr5_3:63294465-63294484 | Msa0824160:CDS | 30.0% | |
| ! | CCAAACTTTTAAACTTCAGA+TGG | - | chr5_3:63294611-63294630 | None:intergenic | 30.0% |
| ! | CCATCTGAAGTTTAAAAGTT+TGG | + | chr5_3:63294608-63294627 | Msa0824160:intron | 30.0% |
| TGCTCATGTAGAAATAGATT+CGG | + | chr5_3:63294774-63294793 | Msa0824160:CDS | 30.0% | |
| !! | ATTATGGCATTGATTGATTC+TGG | + | chr5_3:63294814-63294833 | Msa0824160:CDS | 30.0% |
| ! | CCTTGTCCAATATATCTTTT+CGG | - | chr5_3:63294912-63294931 | None:intergenic | 30.0% |
| CAAGACATTTACTATCATGT+TGG | + | chr5_3:63295072-63295091 | Msa0824160:intron | 30.0% | |
| CTTGCAGTAAAGCTAAAATT+TGG | - | chr5_3:63295208-63295227 | None:intergenic | 30.0% | |
| ATAATAACAGTATCTGATGG+TGG | - | chr5_3:63295431-63295450 | None:intergenic | 30.0% | |
| AAGAAGAAAAACGAAGAATG+AGG | + | chr5_3:63295665-63295684 | Msa0824160:CDS | 30.0% | |
| AGAAGAAAAACGAAGAATGA+GGG | + | chr5_3:63295666-63295685 | Msa0824160:CDS | 30.0% | |
| ! | TTACTGATTATCGAATCAAC+TGG | + | chr5_3:63295716-63295735 | Msa0824160:intron | 30.0% |
| TTTCTTCTGATCCTATAAAG+TGG | - | chr5_3:63295839-63295858 | None:intergenic | 30.0% | |
| ! | CCTTTTTCCATCTTTTGATA+CGG | - | chr5_3:63296031-63296050 | None:intergenic | 30.0% |
| CGTATCAAAAGATGGAAAAA+GGG | + | chr5_3:63296029-63296048 | Msa0824160:CDS | 30.0% | |
| ! | TGTGTGGTATATTTTCCATT+TGG | + | chr5_3:63296269-63296288 | Msa0824160:three_prime_UTR | 30.0% |
| TGTATTAGTAAACCTCCAAA+TGG | - | chr5_3:63296287-63296306 | None:intergenic | 30.0% | |
| TAATAGCAGAAGCTAAGATT+TGG | - | chr5_3:63296379-63296398 | None:intergenic | 30.0% | |
| TCTTAGCTTCTGCTATTAAT+TGG | + | chr5_3:63296381-63296400 | Msa0824160:three_prime_UTR | 30.0% | |
| TGAGTATAGATCAAAGGAAG+AGG | - | chr5_3:63292045-63292064 | None:intergenic | 35.0% | |
| ! | ATATGGATAATTTAGGGCAC+TGG | + | chr5_3:63292449-63292468 | Msa0824160:intron | 35.0% |
| ! | CTTTGACTAGTCAAAGACTA+AGG | - | chr5_3:63292595-63292614 | None:intergenic | 35.0% |
| CTAGGAACTTTGACTACTAT+AGG | - | chr5_3:63292871-63292890 | None:intergenic | 35.0% | |
| AAACGCTGCATTTCATTCTA+GGG | - | chr5_3:63292902-63292921 | None:intergenic | 35.0% | |
| AAAACGCTGCATTTCATTCT+AGG | - | chr5_3:63292903-63292922 | None:intergenic | 35.0% | |
| ATTTATCCACTATGTAGGGT+CGG | - | chr5_3:63293056-63293075 | None:intergenic | 35.0% | |
| GCAAGATTTATCCACTATGT+AGG | - | chr5_3:63293061-63293080 | None:intergenic | 35.0% | |
| ATGTGTTCTCTCCAATAAGA+GGG | - | chr5_3:63293220-63293239 | None:intergenic | 35.0% | |
| ! | CACATGACCTATGGATTAAT+AGG | + | chr5_3:63293305-63293324 | Msa0824160:intron | 35.0% |
| TATGGCAACAAAAGGAAGAA+AGG | + | chr5_3:63293756-63293775 | Msa0824160:CDS | 35.0% | |
| TGAGCTTCAAGAACTTCAAA+AGG | + | chr5_3:63293913-63293932 | Msa0824160:CDS | 35.0% | |
| TACTAAAGAAGTCCATACCA+AGG | - | chr5_3:63294120-63294139 | None:intergenic | 35.0% | |
| CTTCTTTAGTACAGTAACTG+AGG | + | chr5_3:63294129-63294148 | Msa0824160:CDS | 35.0% | |
| !!! | TCTGATTGGCTTTTAGTCTA+TGG | + | chr5_3:63294390-63294409 | Msa0824160:intron | 35.0% |
| ! | TCTTTTTATGAAGGCTGAAG+TGG | + | chr5_3:63294663-63294682 | Msa0824160:intron | 35.0% |
| CATTGAACCAACTGAATTAC+TGG | + | chr5_3:63294840-63294859 | Msa0824160:CDS | 35.0% | |
| CCGAAAAGATATATTGGACA+AGG | + | chr5_3:63294909-63294928 | Msa0824160:CDS | 35.0% | |
| TATTGGACAAGGTTGAGAAA+TGG | + | chr5_3:63294920-63294939 | Msa0824160:CDS | 35.0% | |
| !!! | TTTTTTTGTGTCCGTGTTGT+TGG | + | chr5_3:63295019-63295038 | Msa0824160:intron | 35.0% |
| ACTGATAGACTATAGACGAA+AGG | - | chr5_3:63295138-63295157 | None:intergenic | 35.0% | |
| GTAATTTCGGAAATATGGCA+AGG | - | chr5_3:63295186-63295205 | None:intergenic | 35.0% | |
| CTTACACAACAATGCAAAAC+AGG | + | chr5_3:63295295-63295314 | Msa0824160:intron | 35.0% | |
| !! | TTTTGGTGTATATGCAGCTT+TGG | + | chr5_3:63295522-63295541 | Msa0824160:intron | 35.0% |
| GATATGTCATTCACGTATGA+CGG | + | chr5_3:63295589-63295608 | Msa0824160:CDS | 35.0% | |
| CATGGCATATTCATCTAACA+TGG | - | chr5_3:63295629-63295648 | None:intergenic | 35.0% | |
| TAGATGAATATGCCATGCTT+AGG | + | chr5_3:63295632-63295651 | Msa0824160:CDS | 35.0% | |
| AGAATGAGGGTAAGTTTCAT+TGG | + | chr5_3:63295679-63295698 | Msa0824160:intron | 35.0% | |
| GTTTCATTGGTATGATGACT+AGG | + | chr5_3:63295692-63295711 | Msa0824160:intron | 35.0% | |
| !!! | TTTTACTGACTCGTTTACTC+TGG | + | chr5_3:63295808-63295827 | Msa0824160:intron | 35.0% |
| TCGCTTAATGCTCATCAAAA+TGG | + | chr5_3:63295997-63296016 | Msa0824160:CDS | 35.0% | |
| CCGTATCAAAAGATGGAAAA+AGG | + | chr5_3:63296028-63296047 | Msa0824160:CDS | 35.0% | |
| TGGAAACTAAGCTCTCATTA+GGG | - | chr5_3:63296150-63296169 | None:intergenic | 35.0% | |
| TTGGAAACTAAGCTCTCATT+AGG | - | chr5_3:63296151-63296170 | None:intergenic | 35.0% | |
| CTACAAAGATGAATTGAGGT+TGG | - | chr5_3:63296170-63296189 | None:intergenic | 35.0% | |
| AACGCTACAAAGATGAATTG+AGG | - | chr5_3:63296174-63296193 | None:intergenic | 35.0% | |
| ! | GTGGTATATTTTCCATTTGG+AGG | + | chr5_3:63296272-63296291 | Msa0824160:three_prime_UTR | 35.0% |
| GGAGGTTTACTAATACATGT+TGG | + | chr5_3:63296290-63296309 | Msa0824160:three_prime_UTR | 35.0% | |
| TTCATACAAAAGGGCTTCAA+TGG | - | chr5_3:63296322-63296341 | None:intergenic | 35.0% | |
| ! | GCCCTTTTGTATGAAAATAC+AGG | + | chr5_3:63296327-63296346 | Msa0824160:three_prime_UTR | 35.0% |
| AGAAGAGAGAATGGTTACCT+GGG | - | chr5_3:63292018-63292037 | None:intergenic | 40.0% | |
| AAGAAGAGAGAATGGTTACC+TGG | - | chr5_3:63292019-63292038 | None:intergenic | 40.0% | |
| AGAGGAAGAAGAAGAGAGAA+TGG | - | chr5_3:63292027-63292046 | None:intergenic | 40.0% | |
| ! | CATTCTAGGGACAGAAAACT+AGG | - | chr5_3:63292889-63292908 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTGTGGGGTGTGC+AGG | + | chr5_3:63293150-63293169 | Msa0824160:intron | 40.0% |
| GAAGCTCAAAACCCTCTTAT+TGG | + | chr5_3:63293206-63293225 | Msa0824160:CDS | 40.0% | |
| CATGTGTTCTCTCCAATAAG+AGG | - | chr5_3:63293221-63293240 | None:intergenic | 40.0% | |
| CTTATTGGAGAGAACACATG+TGG | + | chr5_3:63293221-63293240 | Msa0824160:CDS | 40.0% | |
| CATGTGCATCTAATGTTGCA+AGG | - | chr5_3:63293291-63293310 | None:intergenic | 40.0% | |
| CATTAGATGCACATGACCTA+TGG | + | chr5_3:63293296-63293315 | Msa0824160:intron | 40.0% | |
| GTTGTAGGAAATATGGGATG+AGG | + | chr5_3:63293346-63293365 | Msa0824160:intron | 40.0% | |
| TAGGAAATATGGGATGAGGT+TGG | + | chr5_3:63293350-63293369 | Msa0824160:intron | 40.0% | |
| TTGGTGAAAGTGATGAGGAA+CGG | + | chr5_3:63293369-63293388 | Msa0824160:CDS | 40.0% | |
| CTTGGATGTGTACAAGAGAA+AGG | + | chr5_3:63293424-63293443 | Msa0824160:CDS | 40.0% | |
| TTGAACATGCTGCAAAGTCA+CGG | + | chr5_3:63293447-63293466 | Msa0824160:CDS | 40.0% | |
| TCTACACTTCTATCAGCTCT+TGG | + | chr5_3:63293512-63293531 | Msa0824160:CDS | 40.0% | |
| TGAACAGCTATGGCAACAAA+AGG | + | chr5_3:63293748-63293767 | Msa0824160:CDS | 40.0% | |
| CAACTGCAGGTACATCATTA+AGG | - | chr5_3:63293850-63293869 | None:intergenic | 40.0% | |
| AAAACTGTCGATGCACTGTT+AGG | - | chr5_3:63294016-63294035 | None:intergenic | 40.0% | |
| CAGTAGAATCATTCAGGCTT+GGG | - | chr5_3:63294159-63294178 | None:intergenic | 40.0% | |
| TAAGCAATGAAACTCTAGCC+AGG | + | chr5_3:63294197-63294216 | Msa0824160:CDS | 40.0% | |
| TAAAACTGTGTTAGCAAGCC+TGG | - | chr5_3:63294218-63294237 | None:intergenic | 40.0% | |
| TAAAAAGCAGAGGTTGCACA+AGG | + | chr5_3:63294252-63294271 | Msa0824160:CDS | 40.0% | |
| ATTTCCATGCCTATCACACT+TGG | + | chr5_3:63294334-63294353 | Msa0824160:intron | 40.0% | |
| TCAAACAGTTTCCTTTCCTC+TGG | - | chr5_3:63294499-63294518 | None:intergenic | 40.0% | |
| CTGAGATGTTACAGGTAACA+TGG | - | chr5_3:63294522-63294541 | None:intergenic | 40.0% | |
| TGCTGCAAGAGAGAAGATTA+TGG | + | chr5_3:63294798-63294817 | Msa0824160:CDS | 40.0% | |
| ATGTCAGCCAGTAATTCAGT+TGG | - | chr5_3:63294850-63294869 | None:intergenic | 40.0% | |
| ! | AACTGAATTACTGGCTGACA+TGG | + | chr5_3:63294849-63294868 | Msa0824160:CDS | 40.0% |
| TCGGCTTAAAGCTTCTTCTT+TGG | - | chr5_3:63294893-63294912 | None:intergenic | 40.0% | |
| !! | GCTGGCTTGAGGATTATAAT+CGG | + | chr5_3:63294965-63294984 | Msa0824160:CDS | 40.0% |
| ! | CTGGCTTGAGGATTATAATC+GGG | + | chr5_3:63294966-63294985 | Msa0824160:CDS | 40.0% |
| !! | TTGTTGGTTGTGCACAGTTT+TGG | + | chr5_3:63295035-63295054 | Msa0824160:intron | 40.0% |
| ! | TGCAAATTGACTCAGTTCAG+AGG | - | chr5_3:63295111-63295130 | None:intergenic | 40.0% |
| ATGCAAAACAGGATGACAAC+AGG | + | chr5_3:63295306-63295325 | Msa0824160:intron | 40.0% | |
| AACAGGTATAATGCAAGCAG+AGG | + | chr5_3:63295323-63295342 | Msa0824160:CDS | 40.0% | |
| GGTTTCATTCCATACATACC+AGG | - | chr5_3:63295404-63295423 | None:intergenic | 40.0% | |
| ! | TGCAGCTTTGGTTGATACAT+TGG | + | chr5_3:63295534-63295553 | Msa0824160:intron | 40.0% |
| TCATCTAACATGGCAAGAAG+AGG | - | chr5_3:63295619-63295638 | None:intergenic | 40.0% | |
| CTCTGGACTATCCACTTTAT+AGG | + | chr5_3:63295825-63295844 | Msa0824160:intron | 40.0% | |
| ATTTCAAGAGCAGCAAAGCA+CGG | + | chr5_3:63295858-63295877 | Msa0824160:CDS | 40.0% | |
| TTTGAACCAAAAGGAGCTTC+TGG | - | chr5_3:63295886-63295905 | None:intergenic | 40.0% | |
| ATGCTCATCAAAATGGAAGC+AGG | + | chr5_3:63296004-63296023 | Msa0824160:CDS | 40.0% | |
| ACATAATTCACAGGAGCAAC+TGG | - | chr5_3:63296066-63296085 | None:intergenic | 40.0% | |
| AGTTGCTCCTGTGAATTATG+TGG | + | chr5_3:63296065-63296084 | Msa0824160:CDS | 40.0% | |
| ! | AGCAGCATCTTCTTTTGACA+TGG | - | chr5_3:63296091-63296110 | None:intergenic | 40.0% |
| CAAGTGACAAGCAATTAGAG+AGG | + | chr5_3:63296231-63296250 | Msa0824160:three_prime_UTR | 40.0% | |
| AACTTCACAAACCCTAACCC+AGG | + | chr5_3:63291998-63292017 | Msa0824160:five_prime_UTR | 45.0% | |
| GAGAATGGTTACCTGGGTTA+GGG | - | chr5_3:63292012-63292031 | None:intergenic | 45.0% | |
| AGAGAATGGTTACCTGGGTT+AGG | - | chr5_3:63292013-63292032 | None:intergenic | 45.0% | |
| CTGGTTCACTGTGATTTCAG+CGG | + | chr5_3:63292761-63292780 | Msa0824160:intron | 45.0% | |
| ATTGAAGTTCCAGAGCAACC+TGG | - | chr5_3:63293176-63293195 | None:intergenic | 45.0% | |
| !! | AGGTTGCTCTGGAACTTCAA+TGG | + | chr5_3:63293175-63293194 | Msa0824160:exon | 45.0% |
| TTCCTTGTTGAAGAAGCTGC+AGG | + | chr5_3:63293244-63293263 | Msa0824160:CDS | 45.0% | |
| TACCTGCAGCTTCTTCAACA+AGG | - | chr5_3:63293249-63293268 | None:intergenic | 45.0% | |
| !! | TGAGGTTGGTGAAAGTGATG+AGG | + | chr5_3:63293364-63293383 | Msa0824160:CDS | 45.0% |
| TGGTGAAAGTGATGAGGAAC+GGG | + | chr5_3:63293370-63293389 | Msa0824160:CDS | 45.0% | |
| GATGCTTCTTCAGTTAGAGC+AGG | + | chr5_3:63293397-63293416 | Msa0824160:CDS | 45.0% | |
| TGAACATGCTGCAAAGTCAC+GGG | + | chr5_3:63293448-63293467 | Msa0824160:CDS | 45.0% | |
| TCTATCAGCTCTTGGCGAAA+AGG | + | chr5_3:63293520-63293539 | Msa0824160:CDS | 45.0% | |
| CTATCAGCTCTTGGCGAAAA+GGG | + | chr5_3:63293521-63293540 | Msa0824160:CDS | 45.0% | |
| TCGCAGCCTGATAATACTTC+TGG | + | chr5_3:63293686-63293705 | Msa0824160:intron | 45.0% | |
| CTTCAAACTTCTTCAGGGTC+AGG | - | chr5_3:63293883-63293902 | None:intergenic | 45.0% | |
| CATGATCTATGTGCTGTCCT+TGG | + | chr5_3:63294100-63294119 | Msa0824160:CDS | 45.0% | |
| TCTATGTGCTGTCCTTGGTA+TGG | + | chr5_3:63294105-63294124 | Msa0824160:CDS | 45.0% | |
| TAGAATCATTCAGGCTTGGG+TGG | - | chr5_3:63294156-63294175 | None:intergenic | 45.0% | |
| CCAGTAGAATCATTCAGGCT+TGG | - | chr5_3:63294160-63294179 | None:intergenic | 45.0% | |
| CCAAGCCTGAATGATTCTAC+TGG | + | chr5_3:63294157-63294176 | Msa0824160:CDS | 45.0% | |
| GCACACCAGTAGAATCATTC+AGG | - | chr5_3:63294165-63294184 | None:intergenic | 45.0% | |
| ACTTCCAAGTGTGATAGGCA+TGG | - | chr5_3:63294341-63294360 | None:intergenic | 45.0% | |
| GCTAATTCTTGGAGCTGCAA+TGG | - | chr5_3:63294436-63294455 | None:intergenic | 45.0% | |
| ! | TCTAATGGATACTCCTCCAG+AGG | + | chr5_3:63294480-63294499 | Msa0824160:CDS | 45.0% |
| AACAGTTTCCTTTCCTCTGG+AGG | - | chr5_3:63294496-63294515 | None:intergenic | 45.0% | |
| GACAGAAGCTGAGATGTTAC+AGG | - | chr5_3:63294530-63294549 | None:intergenic | 45.0% | |
| GTCGATGAAGTCACTATTCC+TGG | + | chr5_3:63294547-63294566 | Msa0824160:CDS | 45.0% | |
| CTCAATCAGATCCAGAGCAA+GGG | - | chr5_3:63294575-63294594 | None:intergenic | 45.0% | |
| TTGACCAGCTTAAAGCAAGC+AGG | + | chr5_3:63294698-63294717 | Msa0824160:CDS | 45.0% | |
| ! | TCATCCTGCTTGCTTTAAGC+TGG | - | chr5_3:63294705-63294724 | None:intergenic | 45.0% |
| GCTTAAAGCAAGCAGGATGA+AGG | + | chr5_3:63294705-63294724 | Msa0824160:CDS | 45.0% | |
| ACTGTGCACAACCAACAACA+CGG | - | chr5_3:63295033-63295052 | None:intergenic | 45.0% | |
| !! | ACAGTATCTGATGGTGGTTG+TGG | - | chr5_3:63295425-63295444 | None:intergenic | 45.0% |
| ATGCCATGCTTAGGCATGAA+CGG | + | chr5_3:63295641-63295660 | Msa0824160:CDS | 45.0% | |
| AGCAGGTCCGTATCAAAAGA+TGG | + | chr5_3:63296021-63296040 | Msa0824160:CDS | 45.0% | |
| GACATGGCCACATAATTCAC+AGG | - | chr5_3:63296075-63296094 | None:intergenic | 45.0% | |
| CATTAGGGTGATGTTGGGAT+GGG | - | chr5_3:63296135-63296154 | None:intergenic | 45.0% | |
| TCATTAGGGTGATGTTGGGA+TGG | - | chr5_3:63296136-63296155 | None:intergenic | 45.0% | |
| GCTCTCATTAGGGTGATGTT+GGG | - | chr5_3:63296140-63296159 | None:intergenic | 45.0% | |
| AGCTCTCATTAGGGTGATGT+TGG | - | chr5_3:63296141-63296160 | None:intergenic | 45.0% | |
| ! | AAGACAGAGAGCGTACAGTG+CGG | - | chr5_3:63291806-63291825 | None:intergenic | 50.0% |
| ATGTAGCCGACCCTACATAG+TGG | + | chr5_3:63293047-63293066 | Msa0824160:intron | 50.0% | |
| !! | TCAGTTAGAGCAGGAGTGCT+TGG | + | chr5_3:63293406-63293425 | Msa0824160:CDS | 50.0% |
| CACCAGCACTTGAACAGCTA+TGG | + | chr5_3:63293738-63293757 | Msa0824160:CDS | 50.0% | |
| TGCCATAGCTGTTCAAGTGC+TGG | - | chr5_3:63293743-63293762 | None:intergenic | 50.0% | |
| AGGTCTGACTCATCAACTGC+AGG | - | chr5_3:63293863-63293882 | None:intergenic | 50.0% | |
| !! | GCTTTGTTTGGCAGAGTGAC+AGG | + | chr5_3:63294044-63294063 | Msa0824160:intron | 50.0% |
| GCAGAGTGACAGGTTGCAAA+AGG | + | chr5_3:63294054-63294073 | Msa0824160:intron | 50.0% | |
| TGGATACTCCTCCAGAGGAA+AGG | + | chr5_3:63294485-63294504 | Msa0824160:CDS | 50.0% | |
| GCTCAATCAGATCCAGAGCA+AGG | - | chr5_3:63294576-63294595 | None:intergenic | 50.0% | |
| ! | TGCTCTGGATCTGATTGAGC+AGG | + | chr5_3:63294576-63294595 | Msa0824160:CDS | 50.0% |
| CAGCATGTGAAGAAGAGAGC+TGG | + | chr5_3:63294947-63294966 | Msa0824160:CDS | 50.0% | |
| !! | TGAAGAAGAGAGCTGGCTTG+AGG | + | chr5_3:63294954-63294973 | Msa0824160:CDS | 50.0% |
| !! | GTGCACAGTTTTGGTGAGAG+AGG | + | chr5_3:63295044-63295063 | Msa0824160:intron | 50.0% |
| TCAAGCGAGCAGAGAAAGCT+CGG | + | chr5_3:63295360-63295379 | Msa0824160:CDS | 50.0% | |
| AGCAGAGAAAGCTCGGATAC+TGG | + | chr5_3:63295367-63295386 | Msa0824160:CDS | 50.0% | |
| TGGTTGCCAAAACACGTGCA+TGG | + | chr5_3:63295554-63295573 | Msa0824160:CDS | 50.0% | |
| GGTTGCCAAAACACGTGCAT+GGG | + | chr5_3:63295555-63295574 | Msa0824160:CDS | 50.0% | |
| ! | CTCTTCCCATGCACGTGTTT+TGG | - | chr5_3:63295563-63295582 | None:intergenic | 50.0% |
| TGCCATGCTTAGGCATGAAC+GGG | + | chr5_3:63295642-63295661 | Msa0824160:CDS | 50.0% | |
| TTCCCGTTCATGCCTAAGCA+TGG | - | chr5_3:63295647-63295666 | None:intergenic | 50.0% | |
| ! | ACGGAACCAGAAGCTCCTTT+TGG | + | chr5_3:63295877-63295896 | Msa0824160:CDS | 50.0% |
| !!! | GGGCTGGGTTTTGAACCAAA+AGG | - | chr5_3:63295895-63295914 | None:intergenic | 50.0% |
| ACCTTCTTAGCAGCGCTAAC+TGG | - | chr5_3:63295925-63295944 | None:intergenic | 50.0% | |
| GTTAGCGCTGCTAAGAAGGT+AGG | + | chr5_3:63295925-63295944 | Msa0824160:CDS | 50.0% | |
| GAGCATTAAGCGATAGCCGT+CGG | - | chr5_3:63295990-63296009 | None:intergenic | 50.0% | |
| ! | GATGCTGCTTCCCATGTTTC+TGG | + | chr5_3:63296102-63296121 | Msa0824160:CDS | 50.0% |
| GGGTTCAGCACCAGAAACAT+GGG | - | chr5_3:63296115-63296134 | None:intergenic | 50.0% | |
| TGGGTTCAGCACCAGAAACA+TGG | - | chr5_3:63296116-63296135 | None:intergenic | 50.0% | |
| ! | GAACTGTTCTGAGCTGTGTG+TGG | + | chr5_3:63296253-63296272 | Msa0824160:three_prime_UTR | 50.0% |
| ! | AGACAGAGAGCGTACAGTGC+GGG | - | chr5_3:63291805-63291824 | None:intergenic | 55.0% |
| CTTGGCGAAAAGGGCTTTGC+TGG | + | chr5_3:63293530-63293549 | Msa0824160:CDS | 55.0% | |
| TATTCCTGGTGCCCTTGCTC+TGG | + | chr5_3:63294561-63294580 | Msa0824160:CDS | 55.0% | |
| GAGCTTTCTCTGCTCGCTTG+AGG | - | chr5_3:63295361-63295380 | None:intergenic | 55.0% | |
| GTTCAAAACCCAGCCCTGCT+AGG | + | chr5_3:63295899-63295918 | Msa0824160:CDS | 55.0% | |
| GCCAGTTAGCGCTGCTAAGA+AGG | + | chr5_3:63295921-63295940 | Msa0824160:CDS | 55.0% | |
| AGCGCTGCTAAGAAGGTAGG+TGG | + | chr5_3:63295928-63295947 | Msa0824160:CDS | 55.0% | |
| ! | TTAAGCGATAGCCGTCGGCT+AGG | - | chr5_3:63295985-63296004 | None:intergenic | 55.0% |
| ! | GACAGAGAGCGTACAGTGCG+GGG | - | chr5_3:63291804-63291823 | None:intergenic | 60.0% |
| ! | TTTTGTGGGGTGTGCAGGCC+AGG | + | chr5_3:63293155-63293174 | Msa0824160:intron | 60.0% |
| !! | AGATCCAGAGCAAGGGCACC+AGG | - | chr5_3:63294568-63294587 | None:intergenic | 60.0% |
| ! | CTAACTGGCCTAGCAGGGCT+GGG | - | chr5_3:63295910-63295929 | None:intergenic | 60.0% |
| ! | CAGCGCTAACTGGCCTAGCA+GGG | - | chr5_3:63295915-63295934 | None:intergenic | 60.0% |
| GTAGGTGGCCCTCGTGCTAA+TGG | + | chr5_3:63295943-63295962 | Msa0824160:CDS | 60.0% | |
| GTGGCCCTCGTGCTAATGGA+GGG | + | chr5_3:63295947-63295966 | Msa0824160:CDS | 60.0% | |
| TGGCCCTCGTGCTAATGGAG+GGG | + | chr5_3:63295948-63295967 | Msa0824160:CDS | 60.0% | |
| TGGCCCCTCCATTAGCACGA+GGG | - | chr5_3:63295954-63295973 | None:intergenic | 60.0% | |
| TTGGCCCCTCCATTAGCACG+AGG | - | chr5_3:63295955-63295974 | None:intergenic | 60.0% | |
| CGTGCTAATGGAGGGGCCAA+CGG | + | chr5_3:63295955-63295974 | Msa0824160:CDS | 60.0% | |
| CCAACGGTACTCCTAGCCGA+CGG | + | chr5_3:63295971-63295990 | Msa0824160:CDS | 60.0% | |
| ! | GAGAGCGTACAGTGCGGGGA+TGG | - | chr5_3:63291800-63291819 | None:intergenic | 65.0% |
| GTGTGCAGGCCAGGTTGCTC+TGG | + | chr5_3:63293164-63293183 | Msa0824160:intron | 65.0% | |
| ! | GCTAACTGGCCTAGCAGGGC+TGG | - | chr5_3:63295911-63295930 | None:intergenic | 65.0% |
| ! | GCAGCGCTAACTGGCCTAGC+AGG | - | chr5_3:63295916-63295935 | None:intergenic | 65.0% |
| GGTGGCCCTCGTGCTAATGG+AGG | + | chr5_3:63295946-63295965 | Msa0824160:CDS | 65.0% | |
| !! | CCGTCGGCTAGGAGTACCGT+TGG | - | chr5_3:63295974-63295993 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 63291795 | 63296415 | 63291795 | ID=Msa0824160;Name=Msa0824160 |
| chr5_3 | mRNA | 63291795 | 63296415 | 63291795 | ID=Msa0824160-mRNA-1;Parent=Msa0824160;Name=Msa0824160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=247|1|1|1|0.88|0.9|10|263|583 |
| chr5_3 | exon | 63291795 | 63292019 | 63291795 | ID=Msa0824160-mRNA-1:exon:19738;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63293172 | 63293265 | 63293172 | ID=Msa0824160-mRNA-1:exon:19739;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63293353 | 63293556 | 63293353 | ID=Msa0824160-mRNA-1:exon:19740;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63293692 | 63293940 | 63293692 | ID=Msa0824160-mRNA-1:exon:19741;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63294058 | 63294273 | 63294058 | ID=Msa0824160-mRNA-1:exon:19742;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63294442 | 63294597 | 63294442 | ID=Msa0824160-mRNA-1:exon:19743;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63294676 | 63294987 | 63294676 | ID=Msa0824160-mRNA-1:exon:19744;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63295317 | 63295404 | 63295317 | ID=Msa0824160-mRNA-1:exon:19745;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63295539 | 63295687 | 63295539 | ID=Msa0824160-mRNA-1:exon:19746;Parent=Msa0824160-mRNA-1 |
| chr5_3 | exon | 63295847 | 63296415 | 63295847 | ID=Msa0824160-mRNA-1:exon:19747;Parent=Msa0824160-mRNA-1 |
| chr5_3 | five_prime_UTR | 63291795 | 63292019 | 63291795 | ID=Msa0824160-mRNA-1:five_prime_utr;Parent=Msa0824160-mRNA-1 |
| chr5_3 | five_prime_UTR | 63293172 | 63293193 | 63293172 | ID=Msa0824160-mRNA-1:five_prime_utr;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63293194 | 63293265 | 63293194 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63293353 | 63293556 | 63293353 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63293692 | 63293940 | 63293692 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63294058 | 63294273 | 63294058 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63294442 | 63294597 | 63294442 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63294676 | 63294987 | 63294676 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63295317 | 63295404 | 63295317 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63295539 | 63295687 | 63295539 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | CDS | 63295847 | 63296152 | 63295847 | ID=Msa0824160-mRNA-1:cds;Parent=Msa0824160-mRNA-1 |
| chr5_3 | three_prime_UTR | 63296153 | 63296415 | 63296153 | ID=Msa0824160-mRNA-1:three_prime_utr;Parent=Msa0824160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
