AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1147790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147790 MtrunA17_Chr2g0281621 97.500 40 1 0 67 106 214 253 2.05e-20 87.8
Msa1147790 MtrunA17_Chr2g0281391 73.469 49 13 0 1 49 1 49 1.96e-16 72.4
Msa1147790 MtrunA17_Chr4g0047861 82.500 40 7 0 67 106 234 273 3.07e-16 75.9
Msa1147790 MtrunA17_Chr6g0460391 82.051 39 7 0 2 40 14 52 2.38e-14 67.0
Msa1147790 MtrunA17_Chr2g0281641 71.795 39 11 0 67 105 134 172 5.07e-14 69.3
Msa1147790 MtrunA17_Chr8g0358501 100.000 26 0 0 81 106 1 26 1.46e-12 61.2
Msa1147790 MtrunA17_Chr5g0405141 100.000 26 0 0 81 106 1 26 1.46e-12 61.2
Msa1147790 MtrunA17_Chr5g0447851 100.000 26 0 0 81 106 1 26 1.46e-12 61.2
Msa1147790 MtrunA17_Chr2g0303921 83.333 36 6 0 158 193 240 275 2.20e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1147790 AT1G61130.1 71.795 39 11 0 67 105 213 251 2.78e-13 67.8
Msa1147790 AT1G11080.2 66.667 45 15 0 67 111 234 278 7.13e-13 66.6
Msa1147790 AT1G11080.1 66.667 45 15 0 67 111 234 278 7.54e-13 66.6

Find 49 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGTGTGGGTTGGGAATA+AGG 0.174980 7_4:-27254200 None:intergenic
AGGAAGAAGAAATGATATTT+TGG 0.188759 7_4:+27254095 None:intergenic
GAAGAAGCTGTGACTTTAAT+TGG 0.227175 7_4:-27253469 Msa1147790:intron
TCTTCAGCATAAGAAGTTTC+AGG 0.238833 7_4:+27253560 None:intergenic
AGCGGTTTCTGCTGCTGTTT+CGG 0.306932 7_4:-27253611 Msa1147790:CDS
TCTACACCCTTAGTAGATTC+AGG 0.310531 7_4:+27252541 None:intergenic
TGTTATATGGTTGAAAGTTA+TGG 0.329251 7_4:-27252763 Msa1147790:CDS
GCCCCTGGTAGCTCTGCTTA+TGG 0.343996 7_4:-27252385 Msa1147790:CDS
AACTCGTCAGCTTCGTGTTA+TGG 0.364898 7_4:-27253982 Msa1147790:CDS
TGCAGAAAGCTCTGAAAATC+AGG 0.376100 7_4:-27252497 Msa1147790:intron
CCCTTAGTAGATTCAGGAAT+AGG 0.380781 7_4:+27252547 None:intergenic
TTCTTATGCTGAAGATTGGT+TGG 0.389430 7_4:-27253552 Msa1147790:CDS
AAGAGTATTTGAAGTTGGTA+AGG 0.403752 7_4:+27254070 None:intergenic
TCCTATTCCTGAATCTACTA+AGG 0.405787 7_4:-27252548 Msa1147790:CDS
TGGTTGAAAGTTATGGACTA+TGG 0.418645 7_4:-27252756 Msa1147790:CDS
TATTTGAAGTTGGTAAGGGC+AGG 0.420749 7_4:+27254075 None:intergenic
AAACTTCTTATGCTGAAGAT+TGG 0.428394 7_4:-27253556 Msa1147790:CDS
TTCAGAGCTTTCTGCAGCAT+TGG 0.431912 7_4:+27252504 None:intergenic
AATTAAAGTCACAGCTTCTT+CGG 0.433034 7_4:+27253471 None:intergenic
TGGGAATGGTTGATTATGCT+TGG 0.436255 7_4:-27253532 Msa1147790:CDS
CGTGTTATGGATCTATTCTC+AGG 0.442786 7_4:-27253969 Msa1147790:CDS
TCTTATGCTGAAGATTGGTT+GGG 0.449984 7_4:-27253551 Msa1147790:CDS
CTTCAGCATAAGAAGTTTCA+GGG 0.461101 7_4:+27253561 None:intergenic
AAACCGCTGCAGGCCTCCCC+TGG 0.481818 7_4:+27253626 None:intergenic
TAGTGAAGAGTATTTGAAGT+TGG 0.484550 7_4:+27254065 None:intergenic
TCCACTTTGCTGCATAGAGT+TGG 0.493116 7_4:+27254005 None:intergenic
TGAAGAAGGAAAGGAACGAC+AGG 0.506971 7_4:+27254124 None:intergenic
ACAGCAGCAGAAACCGCTGC+AGG 0.518980 7_4:+27253616 None:intergenic
TGCTGAAGATTGGTTGGGAA+TGG 0.521112 7_4:-27253546 Msa1147790:CDS
TCTGTTAAGAACATGCTACC+AGG 0.525865 7_4:-27253644 Msa1147790:CDS
TGGGAAGAATGAAGAAGGAA+AGG 0.525960 7_4:+27254115 None:intergenic
AGAGTATTTGAAGTTGGTAA+GGG 0.534861 7_4:+27254071 None:intergenic
GCACCATAAGCAGAGCTACC+AGG 0.541799 7_4:+27252382 None:intergenic
CACCATAAGCAGAGCTACCA+GGG 0.543311 7_4:+27252383 None:intergenic
CTACCAGGGGAGGCCTGCAG+CGG 0.565197 7_4:-27253629 Msa1147790:CDS
TTATGGTGCATAAGACGACC+TGG 0.566577 7_4:-27252368 Msa1147790:CDS
CCTATTCCTGAATCTACTAA+GGG 0.574186 7_4:-27252547 Msa1147790:CDS
ACCAACTCTATGCAGCAAAG+TGG 0.591206 7_4:-27254006 Msa1147790:exon
AGCTCATCAACAATGGCAGA+TGG 0.600942 7_4:-27252691 Msa1147790:CDS
CTGTTAAGAACATGCTACCA+GGG 0.603727 7_4:-27253643 Msa1147790:CDS
TAAGAACATGCTACCAGGGG+AGG 0.606131 7_4:-27253639 Msa1147790:CDS
TGATTTGAGCTCATCAACAA+TGG 0.616168 7_4:-27252698 Msa1147790:CDS
TGGTCTTTCTTCCTTCACCA+AGG 0.629656 7_4:-27252671 Msa1147790:intron
ATGGTGCATAAGACGACCTG+GGG 0.631357 7_4:-27252366 Msa1147790:CDS
TATGGTGCATAAGACGACCT+GGG 0.640286 7_4:-27252367 Msa1147790:CDS
TCATGTAGAGACTGTAGATG+TGG 0.685482 7_4:-27253940 Msa1147790:CDS
TGTTAAGAACATGCTACCAG+GGG 0.702676 7_4:-27253642 Msa1147790:CDS
ACCATAAGCAGAGCTACCAG+GGG 0.746221 7_4:+27252384 None:intergenic
TGGTGCATAAGACGACCTGG+GGG 0.758492 7_4:-27252365 Msa1147790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTTCCCAAAATT+CGG + chr7_4:27252673-27252692 None:intergenic 15.0%
!!! AATTTTGGGAAATTTTTTTT+TGG - chr7_4:27252673-27252692 Msa1147790:CDS 15.0%
!!! ATTTTGGGAAATTTTTTTTT+GGG - chr7_4:27252674-27252693 Msa1147790:CDS 15.0%
!! ACTAAAAACAATAAGAAAAT+TGG - chr7_4:27253292-27253311 Msa1147790:intron 15.0%
!! AAAAAAAATTTCCCAAAATT+CGG + chr7_4:27252673-27252692 None:intergenic 15.0%
!!! AATTTTGGGAAATTTTTTTT+TGG - chr7_4:27252673-27252692 Msa1147790:CDS 15.0%
!!! ATTTTGGGAAATTTTTTTTT+GGG - chr7_4:27252674-27252693 Msa1147790:CDS 15.0%
!! ACTAAAAACAATAAGAAAAT+TGG - chr7_4:27253292-27253311 Msa1147790:intron 15.0%
!! TTTCCTAAATTTAATGTTTG+TGG - chr7_4:27253648-27253667 Msa1147790:CDS 20.0%
!! AAACCACAAACATTAAATTT+AGG + chr7_4:27253654-27253673 None:intergenic 20.0%
!!! TTTTAATTTTGATCATGTTG+AGG - chr7_4:27253671-27253690 Msa1147790:intron 20.0%
!! TTTCCTAAATTTAATGTTTG+TGG - chr7_4:27253648-27253667 Msa1147790:CDS 20.0%
!! AAACCACAAACATTAAATTT+AGG + chr7_4:27253654-27253673 None:intergenic 20.0%
!!! TTTTAATTTTGATCATGTTG+AGG - chr7_4:27253671-27253690 Msa1147790:intron 20.0%
!! GGAAGAAGAAATGATATTTT+GGG + chr7_4:27252454-27252473 None:intergenic 25.0%
!! AGGAAGAAGAAATGATATTT+TGG + chr7_4:27252455-27252474 None:intergenic 25.0%
! TTATCTTGTGAATCAATGAA+TGG - chr7_4:27252733-27252752 Msa1147790:CDS 25.0%
! AGAAACAATAATCAGTAGAA+AGG + chr7_4:27253171-27253190 None:intergenic 25.0%
!! TATTTTATGCTTATACCTAC+AGG - chr7_4:27253237-27253256 Msa1147790:intron 25.0%
!! AGAAAATTGGCATGATTTTA+TGG - chr7_4:27253305-27253324 Msa1147790:intron 25.0%
!!! TATAGGTGTTATTGTTTTTC+AGG - chr7_4:27253330-27253349 Msa1147790:intron 25.0%
!!! CTTAATTTGACATGTTGTTT+TGG - chr7_4:27253740-27253759 Msa1147790:intron 25.0%
! TGTTATATGGTTGAAAGTTA+TGG - chr7_4:27253784-27253803 Msa1147790:intron 25.0%
! ACACAGATTATTAATACAGA+AGG + chr7_4:27253930-27253949 None:intergenic 25.0%
!! GGAAGAAGAAATGATATTTT+GGG + chr7_4:27252454-27252473 None:intergenic 25.0%
!! AGGAAGAAGAAATGATATTT+TGG + chr7_4:27252455-27252474 None:intergenic 25.0%
! TTATCTTGTGAATCAATGAA+TGG - chr7_4:27252733-27252752 Msa1147790:CDS 25.0%
! AGAAACAATAATCAGTAGAA+AGG + chr7_4:27253171-27253190 None:intergenic 25.0%
!! TATTTTATGCTTATACCTAC+AGG - chr7_4:27253237-27253256 Msa1147790:intron 25.0%
!! AGAAAATTGGCATGATTTTA+TGG - chr7_4:27253305-27253324 Msa1147790:intron 25.0%
!!! TATAGGTGTTATTGTTTTTC+AGG - chr7_4:27253330-27253349 Msa1147790:intron 25.0%
!!! CTTAATTTGACATGTTGTTT+TGG - chr7_4:27253740-27253759 Msa1147790:intron 25.0%
! TGTTATATGGTTGAAAGTTA+TGG - chr7_4:27253784-27253803 Msa1147790:intron 25.0%
! ACACAGATTATTAATACAGA+AGG + chr7_4:27253930-27253949 None:intergenic 25.0%
!! TATTTTGGGAAGAATGAAGA+AGG + chr7_4:27252440-27252459 None:intergenic 30.0%
!! AGAGTATTTGAAGTTGGTAA+GGG + chr7_4:27252479-27252498 None:intergenic 30.0%
!! AAGAGTATTTGAAGTTGGTA+AGG + chr7_4:27252480-27252499 None:intergenic 30.0%
!! TAGTGAAGAGTATTTGAAGT+TGG + chr7_4:27252485-27252504 None:intergenic 30.0%
! ATGTAACCAATCCGAATTTT+GGG - chr7_4:27252659-27252678 Msa1147790:intron 30.0%
AAATTTCCCAAAATTCGGAT+TGG + chr7_4:27252668-27252687 None:intergenic 30.0%
! CTTCCAATGTAATTGTTGTT+TGG - chr7_4:27252765-27252784 Msa1147790:CDS 30.0%
AAGCCAAACAACAATTACAT+TGG + chr7_4:27252771-27252790 None:intergenic 30.0%
!! CTTTGATTTGACTGAAATGA+GGG - chr7_4:27252788-27252807 Msa1147790:intron 30.0%
! GTTTCTGTCATTTGGTTATT+AGG - chr7_4:27252831-27252850 Msa1147790:intron 30.0%
!!! TGTTTCGGTTTGACATTTTT+TGG - chr7_4:27252951-27252970 Msa1147790:intron 30.0%
!!! GTTTCGGTTTGACATTTTTT+GGG - chr7_4:27252952-27252971 Msa1147790:intron 30.0%
AAACTTCTTATGCTGAAGAT+TGG - chr7_4:27252991-27253010 Msa1147790:intron 30.0%
AATTAAAGTCACAGCTTCTT+CGG + chr7_4:27253079-27253098 None:intergenic 30.0%
AGGTCAGTTGTTTGTATTAA+TGG - chr7_4:27253130-27253149 Msa1147790:intron 30.0%
!! ATTGTTTCTGATGCTTAGAT+TGG - chr7_4:27253182-27253201 Msa1147790:intron 30.0%
TAGGATCTCTTATGAAGTAA+GGG + chr7_4:27253470-27253489 None:intergenic 30.0%
TTAGGATCTCTTATGAAGTA+AGG + chr7_4:27253471-27253490 None:intergenic 30.0%
ATACAGAAGGAAAGTGAAAA+AGG + chr7_4:27253917-27253936 None:intergenic 30.0%
!! TATTTTGGGAAGAATGAAGA+AGG + chr7_4:27252440-27252459 None:intergenic 30.0%
!! AGAGTATTTGAAGTTGGTAA+GGG + chr7_4:27252479-27252498 None:intergenic 30.0%
!! AAGAGTATTTGAAGTTGGTA+AGG + chr7_4:27252480-27252499 None:intergenic 30.0%
!! TAGTGAAGAGTATTTGAAGT+TGG + chr7_4:27252485-27252504 None:intergenic 30.0%
! ATGTAACCAATCCGAATTTT+GGG - chr7_4:27252659-27252678 Msa1147790:intron 30.0%
AAATTTCCCAAAATTCGGAT+TGG + chr7_4:27252668-27252687 None:intergenic 30.0%
! CTTCCAATGTAATTGTTGTT+TGG - chr7_4:27252765-27252784 Msa1147790:CDS 30.0%
AAGCCAAACAACAATTACAT+TGG + chr7_4:27252771-27252790 None:intergenic 30.0%
!! CTTTGATTTGACTGAAATGA+GGG - chr7_4:27252788-27252807 Msa1147790:intron 30.0%
! GTTTCTGTCATTTGGTTATT+AGG - chr7_4:27252831-27252850 Msa1147790:intron 30.0%
!!! TGTTTCGGTTTGACATTTTT+TGG - chr7_4:27252951-27252970 Msa1147790:intron 30.0%
!!! GTTTCGGTTTGACATTTTTT+GGG - chr7_4:27252952-27252971 Msa1147790:intron 30.0%
AAACTTCTTATGCTGAAGAT+TGG - chr7_4:27252991-27253010 Msa1147790:intron 30.0%
AATTAAAGTCACAGCTTCTT+CGG + chr7_4:27253079-27253098 None:intergenic 30.0%
AGGTCAGTTGTTTGTATTAA+TGG - chr7_4:27253130-27253149 Msa1147790:intron 30.0%
!! ATTGTTTCTGATGCTTAGAT+TGG - chr7_4:27253182-27253201 Msa1147790:intron 30.0%
TAGGATCTCTTATGAAGTAA+GGG + chr7_4:27253470-27253489 None:intergenic 30.0%
TTAGGATCTCTTATGAAGTA+AGG + chr7_4:27253471-27253490 None:intergenic 30.0%
ATACAGAAGGAAAGTGAAAA+AGG + chr7_4:27253917-27253936 None:intergenic 30.0%
!!! TAGAGTTGGTTTTCGAATTC+TGG + chr7_4:27252531-27252550 None:intergenic 35.0%
! GATGTAACCAATCCGAATTT+TGG - chr7_4:27252658-27252677 Msa1147790:intron 35.0%
!! GCTTTGATTTGACTGAAATG+AGG - chr7_4:27252787-27252806 Msa1147790:intron 35.0%
AACAGAAACCAAAAATGTCG+TGG + chr7_4:27252814-27252833 None:intergenic 35.0%
!! TGGTTTCTGTTTCTGTCATT+TGG - chr7_4:27252823-27252842 Msa1147790:intron 35.0%
TGATTGTATCTACATTGTGC+AGG - chr7_4:27252860-27252879 Msa1147790:intron 35.0%
GATTGTATCTACATTGTGCA+GGG - chr7_4:27252861-27252880 Msa1147790:intron 35.0%
CTTCAGCATAAGAAGTTTCA+GGG + chr7_4:27252989-27253008 None:intergenic 35.0%
TCTTCAGCATAAGAAGTTTC+AGG + chr7_4:27252990-27253009 None:intergenic 35.0%
TTCTTATGCTGAAGATTGGT+TGG - chr7_4:27252995-27253014 Msa1147790:intron 35.0%
! TCTTATGCTGAAGATTGGTT+GGG - chr7_4:27252996-27253015 Msa1147790:intron 35.0%
!! GCTTCTTCGGATTGTTTTAT+AGG + chr7_4:27253066-27253085 None:intergenic 35.0%
GAAGAAGCTGTGACTTTAAT+TGG - chr7_4:27253078-27253097 Msa1147790:intron 35.0%
TACAAACAACTGACCTCTAT+TGG + chr7_4:27253126-27253145 None:intergenic 35.0%
! GGCATGATTTTATGGCTTAT+AGG - chr7_4:27253313-27253332 Msa1147790:intron 35.0%
! ATGGTTTGAGACTCAAATTC+TGG + chr7_4:27253440-27253459 None:intergenic 35.0%
AGGATCTCTTATGAAGTAAG+GGG + chr7_4:27253469-27253488 None:intergenic 35.0%
! TAATGAACACTTTCTAGCAC+AGG + chr7_4:27253497-27253516 None:intergenic 35.0%
! TTCTCAAACTGTTTTCTGTG+TGG - chr7_4:27253523-27253542 Msa1147790:CDS 35.0%
CTCTACTAAGAGCTGAATAT+TGG + chr7_4:27253594-27253613 None:intergenic 35.0%
! AAAGTGATTTTCCCTGTTCT+TGG + chr7_4:27253621-27253640 None:intergenic 35.0%
!! GGAAGGGACATTTTGTTATA+TGG - chr7_4:27253771-27253790 Msa1147790:intron 35.0%
! TGGTTGAAAGTTATGGACTA+TGG - chr7_4:27253791-27253810 Msa1147790:intron 35.0%
TGATTTGAGCTCATCAACAA+TGG - chr7_4:27253849-27253868 Msa1147790:intron 35.0%
AAAAACACTAACCTTGGTGA+AGG + chr7_4:27253890-27253909 None:intergenic 35.0%
GGAAAGAAAAACACTAACCT+TGG + chr7_4:27253896-27253915 None:intergenic 35.0%
TCCTATTCCTGAATCTACTA+AGG - chr7_4:27253999-27254018 Msa1147790:CDS 35.0%
CCTATTCCTGAATCTACTAA+GGG - chr7_4:27254000-27254019 Msa1147790:CDS 35.0%
!!! TAGAGTTGGTTTTCGAATTC+TGG + chr7_4:27252531-27252550 None:intergenic 35.0%
! GATGTAACCAATCCGAATTT+TGG - chr7_4:27252658-27252677 Msa1147790:intron 35.0%
!! GCTTTGATTTGACTGAAATG+AGG - chr7_4:27252787-27252806 Msa1147790:intron 35.0%
AACAGAAACCAAAAATGTCG+TGG + chr7_4:27252814-27252833 None:intergenic 35.0%
!! TGGTTTCTGTTTCTGTCATT+TGG - chr7_4:27252823-27252842 Msa1147790:intron 35.0%
TGATTGTATCTACATTGTGC+AGG - chr7_4:27252860-27252879 Msa1147790:intron 35.0%
GATTGTATCTACATTGTGCA+GGG - chr7_4:27252861-27252880 Msa1147790:intron 35.0%
CTTCAGCATAAGAAGTTTCA+GGG + chr7_4:27252989-27253008 None:intergenic 35.0%
TCTTCAGCATAAGAAGTTTC+AGG + chr7_4:27252990-27253009 None:intergenic 35.0%
TTCTTATGCTGAAGATTGGT+TGG - chr7_4:27252995-27253014 Msa1147790:intron 35.0%
! TCTTATGCTGAAGATTGGTT+GGG - chr7_4:27252996-27253015 Msa1147790:intron 35.0%
!! GCTTCTTCGGATTGTTTTAT+AGG + chr7_4:27253066-27253085 None:intergenic 35.0%
GAAGAAGCTGTGACTTTAAT+TGG - chr7_4:27253078-27253097 Msa1147790:intron 35.0%
TACAAACAACTGACCTCTAT+TGG + chr7_4:27253126-27253145 None:intergenic 35.0%
! GGCATGATTTTATGGCTTAT+AGG - chr7_4:27253313-27253332 Msa1147790:intron 35.0%
! ATGGTTTGAGACTCAAATTC+TGG + chr7_4:27253440-27253459 None:intergenic 35.0%
AGGATCTCTTATGAAGTAAG+GGG + chr7_4:27253469-27253488 None:intergenic 35.0%
! TAATGAACACTTTCTAGCAC+AGG + chr7_4:27253497-27253516 None:intergenic 35.0%
! TTCTCAAACTGTTTTCTGTG+TGG - chr7_4:27253523-27253542 Msa1147790:CDS 35.0%
CTCTACTAAGAGCTGAATAT+TGG + chr7_4:27253594-27253613 None:intergenic 35.0%
! AAAGTGATTTTCCCTGTTCT+TGG + chr7_4:27253621-27253640 None:intergenic 35.0%
!! GGAAGGGACATTTTGTTATA+TGG - chr7_4:27253771-27253790 Msa1147790:intron 35.0%
! TGGTTGAAAGTTATGGACTA+TGG - chr7_4:27253791-27253810 Msa1147790:intron 35.0%
TGATTTGAGCTCATCAACAA+TGG - chr7_4:27253849-27253868 Msa1147790:intron 35.0%
AAAAACACTAACCTTGGTGA+AGG + chr7_4:27253890-27253909 None:intergenic 35.0%
GGAAAGAAAAACACTAACCT+TGG + chr7_4:27253896-27253915 None:intergenic 35.0%
TCCTATTCCTGAATCTACTA+AGG - chr7_4:27253999-27254018 Msa1147790:CDS 35.0%
CCTATTCCTGAATCTACTAA+GGG - chr7_4:27254000-27254019 Msa1147790:CDS 35.0%
TGGGAAGAATGAAGAAGGAA+AGG + chr7_4:27252435-27252454 None:intergenic 40.0%
!! TATTTGAAGTTGGTAAGGGC+AGG + chr7_4:27252475-27252494 None:intergenic 40.0%
!!! GTTTTCGAATTCTGGAACAC+TGG + chr7_4:27252523-27252542 None:intergenic 40.0%
CGTGTTATGGATCTATTCTC+AGG - chr7_4:27252578-27252597 Msa1147790:intron 40.0%
TCATGTAGAGACTGTAGATG+TGG - chr7_4:27252607-27252626 Msa1147790:intron 40.0%
TCTGTTAAGAACATGCTACC+AGG - chr7_4:27252903-27252922 Msa1147790:intron 40.0%
CTGTTAAGAACATGCTACCA+GGG - chr7_4:27252904-27252923 Msa1147790:intron 40.0%
TGTTAAGAACATGCTACCAG+GGG - chr7_4:27252905-27252924 Msa1147790:intron 40.0%
!!! TTTGACATTTTTTGGGCAGC+TGG - chr7_4:27252959-27252978 Msa1147790:intron 40.0%
!!! TTGACATTTTTTGGGCAGCT+GGG - chr7_4:27252960-27252979 Msa1147790:intron 40.0%
TGGGAATGGTTGATTATGCT+TGG - chr7_4:27253015-27253034 Msa1147790:intron 40.0%
! ACTTTCTAGCACAGGTCATT+AGG + chr7_4:27253489-27253508 None:intergenic 40.0%
!!! TTTGACATGTTGTTTTGGCC+TGG - chr7_4:27253745-27253764 Msa1147790:intron 40.0%
CCCTTAGTAGATTCAGGAAT+AGG + chr7_4:27254003-27254022 None:intergenic 40.0%
TCTACACCCTTAGTAGATTC+AGG + chr7_4:27254009-27254028 None:intergenic 40.0%
!! TGCAGAAAGCTCTGAAAATC+AGG - chr7_4:27254050-27254069 Msa1147790:five_prime_UTR 40.0%
TGGGAAGAATGAAGAAGGAA+AGG + chr7_4:27252435-27252454 None:intergenic 40.0%
!! TATTTGAAGTTGGTAAGGGC+AGG + chr7_4:27252475-27252494 None:intergenic 40.0%
!!! GTTTTCGAATTCTGGAACAC+TGG + chr7_4:27252523-27252542 None:intergenic 40.0%
CGTGTTATGGATCTATTCTC+AGG - chr7_4:27252578-27252597 Msa1147790:intron 40.0%
TCATGTAGAGACTGTAGATG+TGG - chr7_4:27252607-27252626 Msa1147790:intron 40.0%
TCTGTTAAGAACATGCTACC+AGG - chr7_4:27252903-27252922 Msa1147790:intron 40.0%
CTGTTAAGAACATGCTACCA+GGG - chr7_4:27252904-27252923 Msa1147790:intron 40.0%
TGTTAAGAACATGCTACCAG+GGG - chr7_4:27252905-27252924 Msa1147790:intron 40.0%
!!! TTTGACATTTTTTGGGCAGC+TGG - chr7_4:27252959-27252978 Msa1147790:intron 40.0%
!!! TTGACATTTTTTGGGCAGCT+GGG - chr7_4:27252960-27252979 Msa1147790:intron 40.0%
TGGGAATGGTTGATTATGCT+TGG - chr7_4:27253015-27253034 Msa1147790:intron 40.0%
! ACTTTCTAGCACAGGTCATT+AGG + chr7_4:27253489-27253508 None:intergenic 40.0%
!!! TTTGACATGTTGTTTTGGCC+TGG - chr7_4:27253745-27253764 Msa1147790:intron 40.0%
CCCTTAGTAGATTCAGGAAT+AGG + chr7_4:27254003-27254022 None:intergenic 40.0%
TCTACACCCTTAGTAGATTC+AGG + chr7_4:27254009-27254028 None:intergenic 40.0%
!! TGCAGAAAGCTCTGAAAATC+AGG - chr7_4:27254050-27254069 Msa1147790:five_prime_UTR 40.0%
TGAAGAAGGAAAGGAACGAC+AGG + chr7_4:27252426-27252445 None:intergenic 45.0%
ACCAACTCTATGCAGCAAAG+TGG - chr7_4:27252541-27252560 Msa1147790:CDS 45.0%
TCCACTTTGCTGCATAGAGT+TGG + chr7_4:27252545-27252564 None:intergenic 45.0%
AACTCGTCAGCTTCGTGTTA+TGG - chr7_4:27252565-27252584 Msa1147790:CDS 45.0%
! AATGAGGGCCACGACATTTT+TGG - chr7_4:27252803-27252822 Msa1147790:intron 45.0%
! TGCTGAAGATTGGTTGGGAA+TGG - chr7_4:27253001-27253020 Msa1147790:intron 45.0%
TCGCTTCAATCAACCGTGTT+GGG - chr7_4:27253386-27253405 Msa1147790:intron 45.0%
AAGATGTCTCAGTCCCAACA+CGG + chr7_4:27253402-27253421 None:intergenic 45.0%
ATGAAGTAAGGGGTCACTGA+TGG + chr7_4:27253459-27253478 None:intergenic 45.0%
! GTGATTTTCCCTGTTCTTGG+CGG + chr7_4:27253618-27253637 None:intergenic 45.0%
!!! ACATGTTGTTTTGGCCTGGT+AGG - chr7_4:27253749-27253768 Msa1147790:intron 45.0%
!!! CATGTTGTTTTGGCCTGGTA+GGG - chr7_4:27253750-27253769 Msa1147790:intron 45.0%
AGCTCATCAACAATGGCAGA+TGG - chr7_4:27253856-27253875 Msa1147790:intron 45.0%
TGGTCTTTCTTCCTTCACCA+AGG - chr7_4:27253876-27253895 Msa1147790:intron 45.0%
GAGACGCTGATGAAGACTAA+AGG + chr7_4:27253975-27253994 None:intergenic 45.0%
TTCAGAGCTTTCTGCAGCAT+TGG + chr7_4:27254046-27254065 None:intergenic 45.0%
AATTATTGACATGCAGCCCC+TGG - chr7_4:27254147-27254166 Msa1147790:five_prime_UTR 45.0%
TTATGGTGCATAAGACGACC+TGG - chr7_4:27254179-27254198 Msa1147790:five_prime_UTR 45.0%
TATGGTGCATAAGACGACCT+GGG - chr7_4:27254180-27254199 Msa1147790:five_prime_UTR 45.0%
TGAAGAAGGAAAGGAACGAC+AGG + chr7_4:27252426-27252445 None:intergenic 45.0%
ACCAACTCTATGCAGCAAAG+TGG - chr7_4:27252541-27252560 Msa1147790:CDS 45.0%
TCCACTTTGCTGCATAGAGT+TGG + chr7_4:27252545-27252564 None:intergenic 45.0%
AACTCGTCAGCTTCGTGTTA+TGG - chr7_4:27252565-27252584 Msa1147790:CDS 45.0%
! AATGAGGGCCACGACATTTT+TGG - chr7_4:27252803-27252822 Msa1147790:intron 45.0%
! TGCTGAAGATTGGTTGGGAA+TGG - chr7_4:27253001-27253020 Msa1147790:intron 45.0%
TCGCTTCAATCAACCGTGTT+GGG - chr7_4:27253386-27253405 Msa1147790:intron 45.0%
AAGATGTCTCAGTCCCAACA+CGG + chr7_4:27253402-27253421 None:intergenic 45.0%
ATGAAGTAAGGGGTCACTGA+TGG + chr7_4:27253459-27253478 None:intergenic 45.0%
! GTGATTTTCCCTGTTCTTGG+CGG + chr7_4:27253618-27253637 None:intergenic 45.0%
!!! ACATGTTGTTTTGGCCTGGT+AGG - chr7_4:27253749-27253768 Msa1147790:intron 45.0%
!!! CATGTTGTTTTGGCCTGGTA+GGG - chr7_4:27253750-27253769 Msa1147790:intron 45.0%
AGCTCATCAACAATGGCAGA+TGG - chr7_4:27253856-27253875 Msa1147790:intron 45.0%
TGGTCTTTCTTCCTTCACCA+AGG - chr7_4:27253876-27253895 Msa1147790:intron 45.0%
GAGACGCTGATGAAGACTAA+AGG + chr7_4:27253975-27253994 None:intergenic 45.0%
TTCAGAGCTTTCTGCAGCAT+TGG + chr7_4:27254046-27254065 None:intergenic 45.0%
AATTATTGACATGCAGCCCC+TGG - chr7_4:27254147-27254166 Msa1147790:five_prime_UTR 45.0%
TTATGGTGCATAAGACGACC+TGG - chr7_4:27254179-27254198 Msa1147790:five_prime_UTR 45.0%
TATGGTGCATAAGACGACCT+GGG - chr7_4:27254180-27254199 Msa1147790:five_prime_UTR 45.0%
TAAGAACATGCTACCAGGGG+AGG - chr7_4:27252908-27252927 Msa1147790:intron 50.0%
! AGCGGTTTCTGCTGCTGTTT+CGG - chr7_4:27252936-27252955 Msa1147790:intron 50.0%
GTGAACTCAGCGAACCTATG+TGG - chr7_4:27253100-27253119 Msa1147790:intron 50.0%
CGAACCTATGTGGCCAATAG+AGG - chr7_4:27253110-27253129 Msa1147790:intron 50.0%
CTGACCTCTATTGGCCACAT+AGG + chr7_4:27253117-27253136 None:intergenic 50.0%
CCAGCTGAATGTCAACCTGT+AGG + chr7_4:27253255-27253274 None:intergenic 50.0%
! CCTACAGGTTGACATTCAGC+TGG - chr7_4:27253252-27253271 Msa1147790:intron 50.0%
GTCGCTTCAATCAACCGTGT+TGG - chr7_4:27253385-27253404 Msa1147790:intron 50.0%
TAGTAGAGACCGCCAAGAAC+AGG - chr7_4:27253606-27253625 Msa1147790:CDS 50.0%
AGTAGAGACCGCCAAGAACA+GGG - chr7_4:27253607-27253626 Msa1147790:CDS 50.0%
!!! TTGTTTTGGCCTGGTAGGGA+AGG - chr7_4:27253754-27253773 Msa1147790:intron 50.0%
!!! TGTTTTGGCCTGGTAGGGAA+GGG - chr7_4:27253755-27253774 Msa1147790:intron 50.0%
CAAAATGTCCCTTCCCTACC+AGG + chr7_4:27253766-27253785 None:intergenic 50.0%
! CAGGTTTTGCATCTCTCTCC+CGG - chr7_4:27254069-27254088 Msa1147790:five_prime_UTR 50.0%
ACCATAAGCAGAGCTACCAG+GGG + chr7_4:27254166-27254185 None:intergenic 50.0%
CACCATAAGCAGAGCTACCA+GGG + chr7_4:27254167-27254186 None:intergenic 50.0%
ATGGTGCATAAGACGACCTG+GGG - chr7_4:27254181-27254200 Msa1147790:five_prime_UTR 50.0%
AGACGACCTGGGGGATTTAA+TGG - chr7_4:27254191-27254210 Msa1147790:five_prime_UTR 50.0%
TAAGAACATGCTACCAGGGG+AGG - chr7_4:27252908-27252927 Msa1147790:intron 50.0%
! AGCGGTTTCTGCTGCTGTTT+CGG - chr7_4:27252936-27252955 Msa1147790:intron 50.0%
GTGAACTCAGCGAACCTATG+TGG - chr7_4:27253100-27253119 Msa1147790:intron 50.0%
CGAACCTATGTGGCCAATAG+AGG - chr7_4:27253110-27253129 Msa1147790:intron 50.0%
CTGACCTCTATTGGCCACAT+AGG + chr7_4:27253117-27253136 None:intergenic 50.0%
CCAGCTGAATGTCAACCTGT+AGG + chr7_4:27253255-27253274 None:intergenic 50.0%
! CCTACAGGTTGACATTCAGC+TGG - chr7_4:27253252-27253271 Msa1147790:intron 50.0%
GTCGCTTCAATCAACCGTGT+TGG - chr7_4:27253385-27253404 Msa1147790:intron 50.0%
TAGTAGAGACCGCCAAGAAC+AGG - chr7_4:27253606-27253625 Msa1147790:CDS 50.0%
AGTAGAGACCGCCAAGAACA+GGG - chr7_4:27253607-27253626 Msa1147790:CDS 50.0%
!!! TTGTTTTGGCCTGGTAGGGA+AGG - chr7_4:27253754-27253773 Msa1147790:intron 50.0%
!!! TGTTTTGGCCTGGTAGGGAA+GGG - chr7_4:27253755-27253774 Msa1147790:intron 50.0%
CAAAATGTCCCTTCCCTACC+AGG + chr7_4:27253766-27253785 None:intergenic 50.0%
! CAGGTTTTGCATCTCTCTCC+CGG - chr7_4:27254069-27254088 Msa1147790:five_prime_UTR 50.0%
ACCATAAGCAGAGCTACCAG+GGG + chr7_4:27254166-27254185 None:intergenic 50.0%
CACCATAAGCAGAGCTACCA+GGG + chr7_4:27254167-27254186 None:intergenic 50.0%
ATGGTGCATAAGACGACCTG+GGG - chr7_4:27254181-27254200 Msa1147790:five_prime_UTR 50.0%
GCACCATAAGCAGAGCTACC+AGG + chr7_4:27254168-27254187 None:intergenic 55.0%
TGGTGCATAAGACGACCTGG+GGG - chr7_4:27254182-27254201 Msa1147790:five_prime_UTR 55.0%
GCACCATAAGCAGAGCTACC+AGG + chr7_4:27254168-27254187 None:intergenic 55.0%
TGGTGCATAAGACGACCTGG+GGG - chr7_4:27254182-27254201 Msa1147790:five_prime_UTR 55.0%
ACAGCAGCAGAAACCGCTGC+AGG + chr7_4:27252934-27252953 None:intergenic 60.0%
! GCCCCTGGTAGCTCTGCTTA+TGG - chr7_4:27254162-27254181 Msa1147790:five_prime_UTR 60.0%
ACAGCAGCAGAAACCGCTGC+AGG + chr7_4:27252934-27252953 None:intergenic 60.0%
! GCCCCTGGTAGCTCTGCTTA+TGG - chr7_4:27254162-27254181 Msa1147790:five_prime_UTR 60.0%
GCGCGCTCGTTTGTGTGTCC+GGG + chr7_4:27254090-27254109 None:intergenic 65.0%
CGCGCGCTCGTTTGTGTGTC+CGG + chr7_4:27254091-27254110 None:intergenic 65.0%
GCGCGCTCGTTTGTGTGTCC+GGG + chr7_4:27254090-27254109 None:intergenic 65.0%
CGCGCGCTCGTTTGTGTGTC+CGG + chr7_4:27254091-27254110 None:intergenic 65.0%
CTACCAGGGGAGGCCTGCAG+CGG - chr7_4:27252918-27252937 Msa1147790:intron 70.0%
AAACCGCTGCAGGCCTCCCC+TGG + chr7_4:27252924-27252943 None:intergenic 70.0%
CTACCAGGGGAGGCCTGCAG+CGG - chr7_4:27252918-27252937 Msa1147790:intron 70.0%
AAACCGCTGCAGGCCTCCCC+TGG + chr7_4:27252924-27252943 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 27252359 27254210 27252359 ID=Msa1147790;Name=Msa1147790
chr7_4 mRNA 27252359 27254210 27252359 ID=Msa1147790-mRNA-1;Parent=Msa1147790;Name=Msa1147790-mRNA-1;_AED=0.34;_eAED=0.34;_QI=191|0.5|0.4|1|1|1|5|0|195
chr7_4 exon 27252359 27252406 27252359 ID=Msa1147790-mRNA-1:exon:6691;Parent=Msa1147790-mRNA-1
chr7_4 exon 27252498 27252590 27252498 ID=Msa1147790-mRNA-1:exon:6690;Parent=Msa1147790-mRNA-1
chr7_4 exon 27252672 27252798 27252672 ID=Msa1147790-mRNA-1:exon:6689;Parent=Msa1147790-mRNA-1
chr7_4 exon 27253470 27253687 27253470 ID=Msa1147790-mRNA-1:exon:6688;Parent=Msa1147790-mRNA-1
chr7_4 exon 27253918 27254210 27253918 ID=Msa1147790-mRNA-1:exon:6687;Parent=Msa1147790-mRNA-1
chr7_4 five_prime_UTR 27254020 27254210 27254020 ID=Msa1147790-mRNA-1:five_prime_utr;Parent=Msa1147790-mRNA-1
chr7_4 CDS 27253918 27254019 27253918 ID=Msa1147790-mRNA-1:cds;Parent=Msa1147790-mRNA-1
chr7_4 CDS 27253470 27253687 27253470 ID=Msa1147790-mRNA-1:cds;Parent=Msa1147790-mRNA-1
chr7_4 CDS 27252672 27252798 27252672 ID=Msa1147790-mRNA-1:cds;Parent=Msa1147790-mRNA-1
chr7_4 CDS 27252498 27252590 27252498 ID=Msa1147790-mRNA-1:cds;Parent=Msa1147790-mRNA-1
chr7_4 CDS 27252359 27252406 27252359 ID=Msa1147790-mRNA-1:cds;Parent=Msa1147790-mRNA-1
Gene Sequence

>Msa1147790

ATGCAGCAAAGTGGAAACTCGTCAGCTTCGTGTTATGGATCTATTCTCAGGAGAAGATCATGTAGAGACTGTAGATGTGGTGAAAAACAAGTGTTGAGAACTGGTACAATAGTTGTGTCTGTGTCTGTTAAGAACATGCTACCAGGGGAGGCCTGCAGCGGTTTCTGCTGCTGTTTCGGTTTGACATTTTTTGGGCAGCTGGGAAACCCTGAAACTTCTTATGCTGAAGATTGGTTGGGAATGGTTGATTATGCTTGGAGTCATGCAGTGATATATGATGAAACCTATAAAACAATCCGAAGAAGCTGTGACTTTAATTGGGAAGGGACATTTTGTTATATGGTTGAAAGTTATGGACTATGGAGACATGTGACAGAATCATTAAAACTATTCTCTTTTGATTTGAGCTCATCAACAATGGCAGATGGTCTTTCTTCCTTCACCAAGTCTTCATCAGCGTCTCAAAATCCTATTCCTGAATCTACTAAGGGTGTAGAAAATGTTAAAGATTCCAATGCTGCAGAAAGCTCTGAAAATCAGCCCCTGGTAGCTCTGCTTATGGTGCATAAGACGACCTGGGGGATTTAA
Protein sequence

>Msa1147790

MQQSGNSSASCYGSILRRRSCRDCRCGEKQVLRTGTIVVSVSVKNMLPGEACSGFCCCFGLTFFGQLGNPETSYAEDWLGMVDYAWSHAVIYDETYKTIRRSCDFNWEGTFCYMVESYGLWRHVTESLKLFSFDLSSSTMADGLSSFTKSSSASQNPIPESTKGVENVKDSNAAESSENQPLVALLMVHKTTWGI*