Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825420 | XP_024639978.1 | 97.237 | 760 | 21 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825420 | sp|Q84VX0|RFS1_ARATH | 71.447 | 760 | 208 | 4 | 1 | 758 | 1 | 753 | 0.0 | 1118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825420 | G7K4U6 | 97.237 | 760 | 21 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118620 | Msa0825420 | 0.811585 | 6.503304e-51 | -8.615850e-47 |
| Msa0788250 | Msa0825420 | 0.907280 | 6.009550e-81 | -8.615850e-47 |
| Msa0825420 | Msa0864610 | 0.850244 | 1.924428e-60 | -8.615850e-47 |
| Msa0825420 | Msa0945040 | 0.912322 | 2.225121e-83 | -8.615850e-47 |
| Msa0825420 | Msa1401820 | 0.891805 | 2.839588e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825420 | MtrunA17_Chr5g0447201 | 97.237 | 760 | 21 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1538 |
| Msa0825420 | MtrunA17_Chr1g0173521 | 59.079 | 760 | 291 | 2 | 1 | 760 | 58 | 797 | 0.0 | 942 |
| Msa0825420 | MtrunA17_Chr4g0064311 | 53.785 | 753 | 319 | 6 | 1 | 750 | 98 | 824 | 0.0 | 839 |
| Msa0825420 | MtrunA17_Chr7g0257731 | 59.128 | 619 | 225 | 4 | 165 | 760 | 1 | 614 | 0.0 | 774 |
| Msa0825420 | MtrunA17_Chr3g0116641 | 47.530 | 749 | 377 | 6 | 1 | 744 | 1 | 738 | 0.0 | 722 |
| Msa0825420 | MtrunA17_Chr6g0449521 | 39.040 | 771 | 426 | 14 | 7 | 756 | 35 | 782 | 0.0 | 543 |
| Msa0825420 | MtrunA17_Chr4g0058701 | 39.740 | 770 | 388 | 16 | 7 | 735 | 22 | 756 | 0.0 | 536 |
| Msa0825420 | MtrunA17_Chr3g0117141 | 38.693 | 765 | 419 | 12 | 7 | 742 | 28 | 771 | 1.05e-178 | 531 |
| Msa0825420 | MtrunA17_Chr7g0267991 | 37.684 | 475 | 264 | 8 | 291 | 747 | 384 | 844 | 2.95e-95 | 315 |
| Msa0825420 | MtrunA17_Chr7g0267991 | 34.818 | 247 | 137 | 3 | 42 | 282 | 71 | 299 | 1.10e-40 | 160 |
| Msa0825420 | MtrunA17_Chr5g0427081 | 96.454 | 141 | 5 | 0 | 520 | 660 | 10 | 150 | 1.10e-91 | 283 |
| Msa0825420 | MtrunA17_Chr8g0380141 | 43.709 | 302 | 157 | 4 | 296 | 587 | 380 | 678 | 7.18e-78 | 265 |
| Msa0825420 | MtrunA17_Chr8g0380141 | 34.553 | 246 | 139 | 4 | 42 | 282 | 70 | 298 | 1.16e-40 | 159 |
| Msa0825420 | MtrunA17_Chr1g0201161 | 41.883 | 308 | 164 | 5 | 284 | 579 | 370 | 674 | 2.80e-70 | 248 |
| Msa0825420 | MtrunA17_Chr1g0201161 | 33.865 | 251 | 134 | 4 | 42 | 282 | 75 | 303 | 7.13e-39 | 155 |
| Msa0825420 | MtrunA17_Chr1g0201161 | 29.480 | 173 | 116 | 3 | 570 | 739 | 734 | 903 | 1.79e-14 | 77.8 |
| Msa0825420 | MtrunA17_Chr7g0270181 | 36.695 | 357 | 205 | 6 | 401 | 747 | 4 | 349 | 1.81e-64 | 219 |
| Msa0825420 | MtrunA17_Chr7g0257741 | 56.863 | 153 | 56 | 2 | 1 | 152 | 1 | 144 | 3.86e-50 | 172 |
| Msa0825420 | MtrunA17_Chr3g0139771 | 76.812 | 69 | 16 | 0 | 681 | 749 | 1 | 69 | 7.32e-16 | 73.6 |
| Msa0825420 | MtrunA17_Chr8g0380131 | 37.037 | 108 | 64 | 2 | 642 | 749 | 3 | 106 | 5.16e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0825420 | AT1G55740.1 | 71.447 | 760 | 208 | 4 | 1 | 758 | 1 | 753 | 0.0 | 1118 |
| Msa0825420 | AT3G57520.1 | 59.463 | 782 | 282 | 3 | 1 | 758 | 1 | 771 | 0.0 | 992 |
| Msa0825420 | AT3G57520.2 | 62.969 | 667 | 236 | 2 | 1 | 667 | 1 | 656 | 0.0 | 909 |
| Msa0825420 | AT5G20250.4 | 54.667 | 750 | 316 | 8 | 1 | 744 | 96 | 827 | 0.0 | 850 |
| Msa0825420 | AT5G20250.3 | 54.618 | 747 | 321 | 7 | 1 | 744 | 1 | 732 | 0.0 | 848 |
| Msa0825420 | AT5G20250.1 | 54.618 | 747 | 321 | 7 | 1 | 744 | 1 | 732 | 0.0 | 848 |
| Msa0825420 | AT5G20250.2 | 54.618 | 747 | 321 | 7 | 1 | 744 | 1 | 732 | 0.0 | 848 |
| Msa0825420 | AT3G57520.3 | 63.028 | 568 | 196 | 3 | 1 | 568 | 1 | 554 | 0.0 | 773 |
| Msa0825420 | AT5G40390.1 | 38.651 | 771 | 422 | 15 | 9 | 748 | 24 | 774 | 4.37e-178 | 530 |
| Msa0825420 | AT4G01970.1 | 38.065 | 465 | 266 | 10 | 296 | 742 | 398 | 858 | 6.97e-98 | 323 |
| Msa0825420 | AT4G01970.1 | 33.544 | 316 | 160 | 7 | 21 | 305 | 49 | 345 | 2.80e-42 | 166 |
| Msa0825420 | AT4G01970.2 | 38.065 | 465 | 266 | 10 | 296 | 742 | 445 | 905 | 2.53e-97 | 322 |
| Msa0825420 | AT4G01970.2 | 33.544 | 316 | 160 | 7 | 21 | 305 | 96 | 392 | 4.34e-42 | 165 |
Find 219 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTCCTTGCCGTCTTTC+TGG | 0.066893 | 5_3:-65232637 | None:intergenic |
| TTAGAGCTTCAGATGATTTC+TGG | 0.146587 | 5_3:+65233353 | Msa0825420:CDS |
| TCTCGGGATTTCATGGTAAT+TGG | 0.169806 | 5_3:-65234423 | None:intergenic |
| GAACATTTCTATTGATTTAT+AGG | 0.181863 | 5_3:+65234743 | Msa0825420:CDS |
| TTAGATACCATTGCAATTAA+TGG | 0.192004 | 5_3:+65232961 | Msa0825420:CDS |
| CAATCCTTGGTTGGTCTTCC+TGG | 0.200624 | 5_3:-65233928 | None:intergenic |
| AGATTTCAGGGCTGTTCTTC+AGG | 0.254721 | 5_3:+65231386 | Msa0825420:CDS |
| CATTCATGTTCCATATCTTT+AGG | 0.258825 | 5_3:-65234080 | None:intergenic |
| GTTCTTGTTACTCCTGCTTC+TGG | 0.263308 | 5_3:+65230734 | Msa0825420:CDS |
| AATCATTACCTGACATAAAT+AGG | 0.266033 | 5_3:-65233628 | None:intergenic |
| GGGACTCATTTGGTGTTCAT+TGG | 0.269955 | 5_3:+65231629 | Msa0825420:CDS |
| GTTTCTTTCTCATTTGCATT+TGG | 0.276272 | 5_3:+65230538 | Msa0825420:five_prime_UTR |
| TTGATCAATGGTGCATTTCT+TGG | 0.278920 | 5_3:+65230764 | Msa0825420:CDS |
| GGACTCATTTGGTGTTCATT+GGG | 0.286060 | 5_3:+65231630 | Msa0825420:CDS |
| GGTTGGTCTTCCTGGAAGTT+TGG | 0.298039 | 5_3:-65233920 | None:intergenic |
| CGACAGTGGCAGATGATAAA+TGG | 0.300808 | 5_3:+65234238 | Msa0825420:CDS |
| CAACAAATGATTCCGTTATC+AGG | 0.308551 | 5_3:-65233180 | None:intergenic |
| GCACGCAATAACAGGATATT+GGG | 0.318440 | 5_3:+65232837 | Msa0825420:CDS |
| TTCATATTCTCGGGATTTCA+TGG | 0.321029 | 5_3:-65234430 | None:intergenic |
| GCACAGTCACTGACATCATT+AGG | 0.326937 | 5_3:+65234193 | Msa0825420:CDS |
| GGTGTCAAATTTGCTCCTAT+TGG | 0.331292 | 5_3:+65234489 | Msa0825420:CDS |
| TTAATCAAGATGTTCAATTC+AGG | 0.335147 | 5_3:+65234513 | Msa0825420:CDS |
| CCAAACCAGTTCAACATATC+TGG | 0.338607 | 5_3:-65232189 | None:intergenic |
| TCTGGTGGTTCTTTGATCAA+TGG | 0.352616 | 5_3:+65230752 | Msa0825420:CDS |
| ATATTAAGAGCCAAACTTCC+AGG | 0.355546 | 5_3:+65233910 | Msa0825420:CDS |
| CATCTGCCACTGTCGATAAA+TGG | 0.356356 | 5_3:-65234230 | None:intergenic |
| GGAGCAAATTTGACACCATT+TGG | 0.358099 | 5_3:-65234483 | None:intergenic |
| GGCACGCAATAACAGGATAT+TGG | 0.359380 | 5_3:+65232836 | Msa0825420:CDS |
| CAGAATATCCTTGAAACTCT+TGG | 0.359438 | 5_3:+65233081 | Msa0825420:CDS |
| GCAGTCAAAGAGTTCAGTTC+TGG | 0.368353 | 5_3:+65234540 | Msa0825420:CDS |
| TGGAACATGAATGACTATTC+TGG | 0.373902 | 5_3:+65234090 | Msa0825420:CDS |
| CATTTGGTGTTCATTGGGGC+TGG | 0.375289 | 5_3:+65231635 | Msa0825420:CDS |
| TGGTGTTTCTTCTGATCAAA+AGG | 0.383403 | 5_3:+65230784 | Msa0825420:CDS |
| CTGGATTCTCGTCGTGGATA+AGG | 0.394790 | 5_3:-65234170 | None:intergenic |
| GCCACACCCGCGCACTTTCA+TGG | 0.396420 | 5_3:-65234586 | None:intergenic |
| CTAGCATCCGCTGGTATTGA+TGG | 0.397699 | 5_3:+65233042 | Msa0825420:CDS |
| GATTCTCTTTGATATGAGTT+AGG | 0.398900 | 5_3:-65232607 | None:intergenic |
| CATTGATATAACTCTTTCTC+CGG | 0.410663 | 5_3:-65234720 | None:intergenic |
| CTTGATGGTGTTAGGGAAGA+AGG | 0.410849 | 5_3:+65230688 | Msa0825420:CDS |
| GCATTTGTTATGACTTCATA+AGG | 0.411544 | 5_3:-65231665 | None:intergenic |
| ATTGCAGTCTCCTAAAGATA+TGG | 0.412765 | 5_3:+65234070 | Msa0825420:intron |
| TTGACTCCAGGAGATGAGAT+AGG | 0.414473 | 5_3:-65232916 | None:intergenic |
| AGCAAGAACTGTGTCTCAAA+GGG | 0.415408 | 5_3:-65231261 | None:intergenic |
| TGTTTCCATTCAACACCATT+GGG | 0.415542 | 5_3:-65232451 | None:intergenic |
| AAGATTGAAGTCGTGGTGTC+CGG | 0.416723 | 5_3:-65233857 | None:intergenic |
| GTGAATTTATGCAGCCAGAT+TGG | 0.418742 | 5_3:+65233440 | Msa0825420:CDS |
| TGAATTTATGCAGCCAGATT+GGG | 0.419847 | 5_3:+65233441 | Msa0825420:CDS |
| AAAGTTGATTACTGCTGATT+CGG | 0.420766 | 5_3:+65234638 | Msa0825420:CDS |
| CCAGATATGTTGAACTGGTT+TGG | 0.421533 | 5_3:+65232189 | Msa0825420:CDS |
| GCTTTCCCTATCTCATCTCC+TGG | 0.423799 | 5_3:+65232910 | Msa0825420:CDS |
| ATTGGAATAGAAACATCCTT+TGG | 0.425085 | 5_3:-65234405 | None:intergenic |
| ATTCAGTTACGAGGAAGAAT+CGG | 0.425977 | 5_3:+65234671 | Msa0825420:CDS |
| GATGGAAACTTGATGGTGTT+AGG | 0.426147 | 5_3:+65230680 | Msa0825420:CDS |
| TAATTCCGTCACAGGGACTA+TGG | 0.429944 | 5_3:-65234460 | None:intergenic |
| GGAATTTGATGGGACTCATT+TGG | 0.432327 | 5_3:+65231619 | Msa0825420:CDS |
| TAATGCTTCATCTGGTTGGT+TGG | 0.433017 | 5_3:-65232941 | None:intergenic |
| AGGGAAGAAGGTTCTGAGTC+AGG | 0.435038 | 5_3:+65230700 | Msa0825420:CDS |
| TTGATGCAGTTCAAAGCGTT+CGG | 0.437922 | 5_3:+65233324 | Msa0825420:intron |
| CACAGTCACTGACATCATTA+GGG | 0.443981 | 5_3:+65234194 | Msa0825420:CDS |
| TACCTCTTTCCATCTCTAGC+AGG | 0.444123 | 5_3:-65233964 | None:intergenic |
| AATGACTATTCTGGAGTTGT+TGG | 0.457081 | 5_3:+65234099 | Msa0825420:CDS |
| AACATCTTGATTAAACCAAT+AGG | 0.457563 | 5_3:-65234504 | None:intergenic |
| TATGTGTGGCACGCAATAAC+AGG | 0.457665 | 5_3:+65232829 | Msa0825420:CDS |
| ATGACTATTCTGGAGTTGTT+GGG | 0.459794 | 5_3:+65234100 | Msa0825420:CDS |
| CTTAAAACATACCACAAAGA+TGG | 0.460266 | 5_3:-65234284 | None:intergenic |
| AGATGCCAGATATGTTGAAC+TGG | 0.461398 | 5_3:+65232184 | Msa0825420:intron |
| ATGTGAATTGTGTGAGATGC+AGG | 0.463395 | 5_3:-65233385 | None:intergenic |
| GGTGTTAAACCTGGGATTAG+TGG | 0.464175 | 5_3:+65232862 | Msa0825420:CDS |
| GGTTGGTTGGACTTGACTCC+AGG | 0.465627 | 5_3:-65232928 | None:intergenic |
| ATGAATCACAGAACAGAGAA+AGG | 0.466293 | 5_3:-65230590 | None:intergenic |
| GATTTCAGGGCTGTTCTTCA+GGG | 0.470284 | 5_3:+65231387 | Msa0825420:CDS |
| TGTTGCTGATGGAAACTTGA+TGG | 0.470783 | 5_3:+65230673 | Msa0825420:CDS |
| ATGTTTCCATTCAACACCAT+TGG | 0.474051 | 5_3:-65232452 | None:intergenic |
| CTTATCCACGACGAGAATCC+AGG | 0.474066 | 5_3:+65234171 | Msa0825420:CDS |
| TTTCAAGAAAAGATGACTGT+AGG | 0.474623 | 5_3:+65230638 | Msa0825420:exon |
| AGTCGCAGAGTCTTTCCTAT+TGG | 0.476411 | 5_3:+65230809 | Msa0825420:CDS |
| CTGAAATCTCCTTCCAAAAG+AGG | 0.477676 | 5_3:-65231372 | None:intergenic |
| TTCAAGAAAAGATGACTGTA+GGG | 0.477683 | 5_3:+65230639 | Msa0825420:exon |
| TTCAGTTACGAGGAAGAATC+GGG | 0.479971 | 5_3:+65234672 | Msa0825420:CDS |
| ATGATGTCAGTGACTGTGCC+TGG | 0.481533 | 5_3:-65234189 | None:intergenic |
| CCATCAAATTCCTCCACATC+AGG | 0.481977 | 5_3:-65231608 | None:intergenic |
| ACAATACAGACGGATTGTAT+AGG | 0.482731 | 5_3:+65233211 | Msa0825420:CDS |
| ACATGAAACATATCCCAATC+TGG | 0.482945 | 5_3:-65233454 | None:intergenic |
| ATGGTATCTAATGCTTCATC+TGG | 0.485206 | 5_3:-65232949 | None:intergenic |
| ACATACTCAAGCTTGCCAAT+AGG | 0.485952 | 5_3:-65230824 | None:intergenic |
| GGAGCTGGTTGGTGCAAAGT+TGG | 0.487373 | 5_3:+65234138 | Msa0825420:CDS |
| ATCAGAAAATAAGCAATCCT+TGG | 0.487411 | 5_3:-65233941 | None:intergenic |
| CATGCTGCTGCAAGAGCAGT+TGG | 0.488415 | 5_3:+65233598 | Msa0825420:CDS |
| GAGGATGTCCTATTTATGTC+AGG | 0.491039 | 5_3:+65233620 | Msa0825420:CDS |
| AGATTGAAGTCGTGGTGTCC+GGG | 0.497726 | 5_3:-65233856 | None:intergenic |
| CCTGATGTGGAGGAATTTGA+TGG | 0.498094 | 5_3:+65231608 | Msa0825420:CDS |
| TATCTAATGCTTCATCTGGT+TGG | 0.499999 | 5_3:-65232945 | None:intergenic |
| CATTGGAGGCATCGATCTCT+AGG | 0.501698 | 5_3:+65233151 | Msa0825420:CDS |
| AAGTTTGTCATAATTGATGA+TGG | 0.501793 | 5_3:+65232406 | Msa0825420:CDS |
| TCTAGGAACTTTCCTGATAA+CGG | 0.503841 | 5_3:+65233168 | Msa0825420:CDS |
| ATCCTTGAAACTCTTGGAGC+AGG | 0.507848 | 5_3:+65233087 | Msa0825420:CDS |
| CCATTTGGTAATTCCGTCAC+AGG | 0.508864 | 5_3:-65234468 | None:intergenic |
| ACTGGTTTGGATGGTGTACA+TGG | 0.510270 | 5_3:+65232202 | Msa0825420:CDS |
| GTGTGAGATGCAGGGTCTCT+TGG | 0.512827 | 5_3:-65233376 | None:intergenic |
| GAATCAGCAGTAATCAACTT+TGG | 0.513800 | 5_3:-65234636 | None:intergenic |
| GCTCTTAATATAGAACCGTC+AGG | 0.513998 | 5_3:-65233898 | None:intergenic |
| ATCAAAGAACCACCAGAAGC+AGG | 0.518612 | 5_3:-65230746 | None:intergenic |
| ATATGATGAATTCCCATGGC+AGG | 0.519402 | 5_3:-65232674 | None:intergenic |
| ACTTGCAAGGAAATATCATC+AGG | 0.521049 | 5_3:+65233128 | Msa0825420:CDS |
| TTCCAGAAAGACGGCAAGGA+AGG | 0.521640 | 5_3:+65232635 | Msa0825420:CDS |
| TCAATTATGACAAACTTAGC+AGG | 0.522019 | 5_3:-65232400 | None:intergenic |
| ACCATTGCAATTAATGGACT+CGG | 0.524368 | 5_3:+65232967 | Msa0825420:CDS |
| GTATTCAATTGTCAAGGAGC+TGG | 0.525702 | 5_3:+65234123 | Msa0825420:CDS |
| CTTGTTACTCCTGCTTCTGG+TGG | 0.525865 | 5_3:+65230737 | Msa0825420:CDS |
| CTGATGAATAAGCACCGAAA+AGG | 0.528725 | 5_3:-65234608 | None:intergenic |
| AAGCAAGAACTGTGTCTCAA+AGG | 0.529677 | 5_3:-65231262 | None:intergenic |
| GAAAATAAGCAATCCTTGGT+TGG | 0.534266 | 5_3:-65233937 | None:intergenic |
| TTAAAACATACCACAAAGAT+GGG | 0.534469 | 5_3:-65234283 | None:intergenic |
| TTGTCATCGCGAGAGAAAGA+AGG | 0.535948 | 5_3:+65232054 | Msa0825420:CDS |
| ATGGAAACTTGATGGTGTTA+GGG | 0.536276 | 5_3:+65230681 | Msa0825420:CDS |
| TATTGGGGTGGTGTTAAACC+TGG | 0.537243 | 5_3:+65232853 | Msa0825420:CDS |
| GATTACTGCTGATTCGGAAG+AGG | 0.537885 | 5_3:+65234644 | Msa0825420:CDS |
| CACTCATATCTAGCATCCGC+TGG | 0.540430 | 5_3:+65233033 | Msa0825420:CDS |
| ATCAAGATGTTCAATTCAGG+AGG | 0.543626 | 5_3:+65234516 | Msa0825420:CDS |
| CAAGGAAGGTCATCGGATAG+AGG | 0.543698 | 5_3:+65232649 | Msa0825420:CDS |
| TGTTCCATGCCACTAATCCC+AGG | 0.544946 | 5_3:-65232871 | None:intergenic |
| TACTGCTGATTCGGAAGAGG+TGG | 0.546336 | 5_3:+65234647 | Msa0825420:CDS |
| CACATTCTCTGAAGTGACGT+TGG | 0.546510 | 5_3:-65232238 | None:intergenic |
| GTCCTGCTCCAAGAGTTTCA+AGG | 0.548641 | 5_3:-65233089 | None:intergenic |
| ACAAAGATGGGAAAATATGA+TGG | 0.552357 | 5_3:-65234271 | None:intergenic |
| GAAACTCTTGGAGCAGGACA+TGG | 0.552642 | 5_3:+65233093 | Msa0825420:CDS |
| TGAATCACAGAACAGAGAAA+GGG | 0.553461 | 5_3:-65230589 | None:intergenic |
| GTGGCAGATGATAAATGGAC+AGG | 0.554459 | 5_3:+65234243 | Msa0825420:CDS |
| TCGGATAGAGGACCCTGCCA+TGG | 0.557137 | 5_3:+65232661 | Msa0825420:CDS |
| TGGAGCAGGACATGGTGGGA+GGG | 0.557166 | 5_3:+65233101 | Msa0825420:CDS |
| TGGACCCCAATGGTGTTGAA+TGG | 0.557644 | 5_3:+65232446 | Msa0825420:CDS |
| GGTGTTTCTTCTGATCAAAA+GGG | 0.558333 | 5_3:+65230785 | Msa0825420:CDS |
| GACTCATTTGGTGTTCATTG+GGG | 0.558449 | 5_3:+65231631 | Msa0825420:CDS |
| GAAATATCATCAGGCATTGG+AGG | 0.559741 | 5_3:+65233137 | Msa0825420:CDS |
| GAAAAGATGACTGTAGGGGC+AGG | 0.561229 | 5_3:+65230644 | Msa0825420:exon |
| CGGATAGAGGACCCTGCCAT+GGG | 0.562030 | 5_3:+65232662 | Msa0825420:CDS |
| TTGGAGCAGGACATGGTGGG+AGG | 0.562696 | 5_3:+65233100 | Msa0825420:CDS |
| GTGGTGGATGACTCAGAGAA+TGG | 0.563083 | 5_3:+65231218 | Msa0825420:CDS |
| GCCGAGTCCATTAATTGCAA+TGG | 0.564685 | 5_3:-65232968 | None:intergenic |
| ACTTCAGAGAATGTGAAAGA+AGG | 0.566901 | 5_3:+65232246 | Msa0825420:CDS |
| GCAGGAATATCTGTTGCTGA+TGG | 0.567325 | 5_3:+65230662 | Msa0825420:CDS |
| AAGAAGCTTGTACTTCCTGA+CGG | 0.570895 | 5_3:+65233883 | Msa0825420:CDS |
| CACAAGGGTTGTGATATTGA+CGG | 0.577264 | 5_3:+65231294 | Msa0825420:CDS |
| GTTGGGGTATTCAATTGTCA+AGG | 0.578349 | 5_3:+65234117 | Msa0825420:CDS |
| GGAACAAAGAGCATTGCTGA+AGG | 0.578391 | 5_3:+65230559 | Msa0825420:five_prime_UTR |
| TGACTCCAGGAGATGAGATA+GGG | 0.578809 | 5_3:-65232915 | None:intergenic |
| TTTATAGGCATGTGTATGTG+TGG | 0.579591 | 5_3:+65232815 | Msa0825420:intron |
| GGAACATTATGAGTCAAAGA+TGG | 0.580896 | 5_3:+65232888 | Msa0825420:CDS |
| CCTGTGACGGAATTACCAAA+TGG | 0.582381 | 5_3:+65234468 | Msa0825420:CDS |
| ATTTCAGAGTCTTCATCCGA+TGG | 0.583061 | 5_3:+65233567 | Msa0825420:intron |
| CTTGCTTATTGAAACACACA+AGG | 0.583726 | 5_3:+65231278 | Msa0825420:CDS |
| ATATGTTGAACTGGTTTGGA+TGG | 0.583851 | 5_3:+65232193 | Msa0825420:CDS |
| ATTGAGATTTGTGTCGAAAG+TGG | 0.584978 | 5_3:+65231426 | Msa0825420:CDS |
| CGGAGAAAGAGTTATATCAA+TGG | 0.585923 | 5_3:+65234721 | Msa0825420:CDS |
| TTACGAGGAAGAATCGGGAT+TGG | 0.588683 | 5_3:+65234677 | Msa0825420:CDS |
| TTGTCATAATTGATGATGGA+TGG | 0.588951 | 5_3:+65232410 | Msa0825420:CDS |
| GCAGCATGATATTCAGCCAT+CGG | 0.591613 | 5_3:-65233583 | None:intergenic |
| GACTATCAATTTGAGTGTGC+CGG | 0.594245 | 5_3:+65234701 | Msa0825420:CDS |
| TCTTCAAAAGATTGAAGTCG+TGG | 0.598479 | 5_3:-65233864 | None:intergenic |
| ATTTCAGGGCTGTTCTTCAG+GGG | 0.600176 | 5_3:+65231388 | Msa0825420:CDS |
| ATGTTTCCATGAAAGTGCGC+GGG | 0.602450 | 5_3:+65234580 | Msa0825420:CDS |
| ATTGACGGAGGGATCGACAA+TGG | 0.602460 | 5_3:+65231309 | Msa0825420:CDS |
| GAACAAAGAGCATTGCTGAA+GGG | 0.603346 | 5_3:+65230560 | Msa0825420:five_prime_UTR |
| TCAATTGTCAAGGAGCTGGT+TGG | 0.603577 | 5_3:+65234127 | Msa0825420:CDS |
| AATCACAAATTCCAGAAAGA+CGG | 0.606328 | 5_3:+65232626 | Msa0825420:CDS |
| TCACACAATTCACATTGCAT+CGG | 0.606593 | 5_3:+65233393 | Msa0825420:CDS |
| TAAACCTGGGATTAGTGGCA+TGG | 0.606597 | 5_3:+65232867 | Msa0825420:CDS |
| TGACTATTCTGGAGTTGTTG+GGG | 0.608376 | 5_3:+65234101 | Msa0825420:CDS |
| CTGTGCCTGGATTCTCGTCG+TGG | 0.608941 | 5_3:-65234176 | None:intergenic |
| ATCCTGCTAGAGATGGAAAG+AGG | 0.609009 | 5_3:+65233962 | Msa0825420:CDS |
| GGTAACAAAACCGCGTAGGT+AGG | 0.610466 | 5_3:-65231351 | None:intergenic |
| GGTAATATGATGAATTCCCA+TGG | 0.612655 | 5_3:-65232678 | None:intergenic |
| ATTGGGGTGGTGTTAAACCT+GGG | 0.617867 | 5_3:+65232854 | Msa0825420:CDS |
| TGCATGAGTCACAATACAGA+CGG | 0.618170 | 5_3:+65233201 | Msa0825420:CDS |
| TCAAGATGTTCAATTCAGGA+GGG | 0.618888 | 5_3:+65234517 | Msa0825420:CDS |
| ACTCTTGGAGCAGGACATGG+TGG | 0.623127 | 5_3:+65233096 | Msa0825420:CDS |
| GCTGCTGCAAGAGCAGTTGG+AGG | 0.623143 | 5_3:+65233601 | Msa0825420:CDS |
| TGGTGGATGACTCAGAGAAT+GGG | 0.624213 | 5_3:+65231219 | Msa0825420:CDS |
| CAAGATGTTCAATTCAGGAG+GGG | 0.626666 | 5_3:+65234518 | Msa0825420:CDS |
| TGAATTAGTCTATCTTCCAA+AGG | 0.628210 | 5_3:+65234389 | Msa0825420:CDS |
| TCTGTTAGCATGGACCCCAA+TGG | 0.628808 | 5_3:+65232436 | Msa0825420:CDS |
| TGGATGGCAATCTGTTAGCA+TGG | 0.629189 | 5_3:+65232426 | Msa0825420:CDS |
| AAGACGGCAAGGAAGGTCAT+CGG | 0.630476 | 5_3:+65232642 | Msa0825420:CDS |
| TATGATGAATTCCCATGGCA+GGG | 0.631193 | 5_3:-65232673 | None:intergenic |
| CTCTTGGAGCAGGACATGGT+GGG | 0.631869 | 5_3:+65233097 | Msa0825420:CDS |
| AAGGAAATATCATCAGGCAT+TGG | 0.632296 | 5_3:+65233134 | Msa0825420:CDS |
| GTGGGAGGGTGAAACTTGCA+AGG | 0.634046 | 5_3:+65233115 | Msa0825420:CDS |
| GTTTCCATTCAACACCATTG+GGG | 0.635207 | 5_3:-65232450 | None:intergenic |
| ATGTTGTGTAGCGACAAGCC+CGG | 0.639558 | 5_3:+65233838 | Msa0825420:intron |
| TCAAGAAAAGATGACTGTAG+GGG | 0.642324 | 5_3:+65230640 | Msa0825420:exon |
| AATTCAAAAGGTTTCAACAG+TGG | 0.643037 | 5_3:-65230616 | None:intergenic |
| CAGCGGATGCTAGATATGAG+TGG | 0.644150 | 5_3:-65233032 | None:intergenic |
| CTGATGTGGAGGAATTTGAT+GGG | 0.644921 | 5_3:+65231609 | Msa0825420:CDS |
| ATGTGAAAGAAGGATTACAA+AGG | 0.646563 | 5_3:+65232256 | Msa0825420:CDS |
| AAACTTTCTCAGGATTCACA+AGG | 0.647279 | 5_3:-65232990 | None:intergenic |
| CATTTGGTAATTCCGTCACA+GGG | 0.654139 | 5_3:-65234467 | None:intergenic |
| AGGGTTGTGATATTGACGGA+GGG | 0.657385 | 5_3:+65231298 | Msa0825420:CDS |
| AAATGAGAAAGAAACAGAGA+AGG | 0.660930 | 5_3:-65230530 | None:intergenic |
| ACTCAGAGAATGGGTAACTG+TGG | 0.666426 | 5_3:+65231228 | Msa0825420:CDS |
| GATTGTAGGATGTCCTGATG+TGG | 0.668084 | 5_3:+65231595 | Msa0825420:intron |
| CACGCAATAACAGGATATTG+GGG | 0.669516 | 5_3:+65232838 | Msa0825420:CDS |
| CAAATTCCAGAAAGACGGCA+AGG | 0.669689 | 5_3:+65232631 | Msa0825420:CDS |
| ACTTCCAGGAAGACCAACCA+AGG | 0.671630 | 5_3:+65233924 | Msa0825420:CDS |
| GCAAGAACTGTGTCTCAAAG+GGG | 0.673183 | 5_3:-65231260 | None:intergenic |
| AAGAGGTAACAAAACCGCGT+AGG | 0.674435 | 5_3:-65231355 | None:intergenic |
| CTGGTTTGGATGGTGTACAT+GGG | 0.686671 | 5_3:+65232203 | Msa0825420:CDS |
| TGTAGGATGTCCTGATGTGG+AGG | 0.686980 | 5_3:+65231598 | Msa0825420:intron |
| AAGGGTTGTGATATTGACGG+AGG | 0.687615 | 5_3:+65231297 | Msa0825420:CDS |
| TGTGAATTGTGTGAGATGCA+GGG | 0.690378 | 5_3:-65233384 | None:intergenic |
| AATGTTTCCATGAAAGTGCG+CGG | 0.690958 | 5_3:+65234579 | Msa0825420:CDS |
| TATCGACCATTTATCGACAG+TGG | 0.693571 | 5_3:+65234224 | Msa0825420:CDS |
| CTGGCTGCATAAATTCACCA+AGG | 0.700322 | 5_3:-65233435 | None:intergenic |
| GCAATAACAGGATATTGGGG+TGG | 0.700706 | 5_3:+65232841 | Msa0825420:CDS |
| CCAAGGTGGTCCTACCTACG+CGG | 0.703690 | 5_3:+65231341 | Msa0825420:CDS |
| TTGCTTATTGAAACACACAA+GGG | 0.706543 | 5_3:+65231279 | Msa0825420:CDS |
| GACAATGGAGAACAAGACCA+AGG | 0.709771 | 5_3:+65231324 | Msa0825420:CDS |
| AGAGGTGGAATTCAGTTACG+AGG | 0.721190 | 5_3:+65234662 | Msa0825420:CDS |
| TTTGACACCATCAATACCAG+CGG | 0.721207 | 5_3:-65233049 | None:intergenic |
| AATGGAGAACAAGACCAAGG+TGG | 0.764997 | 5_3:+65231327 | Msa0825420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATGTTTTTGTTTT+AGG | + | chr5_3:65231160-65231179 | Msa0825420:intron | 10.0% |
| !!! | TTTATTATGTTTTTGTTTTA+GGG | + | chr5_3:65231161-65231180 | Msa0825420:intron | 10.0% |
| !!! | TCAAATTTTTACTTTAAAAA+TGG | - | chr5_3:65232098-65232117 | None:intergenic | 10.0% |
| !!! | TTTTTAAAGTAAAAATTTGA+TGG | + | chr5_3:65232098-65232117 | Msa0825420:intron | 10.0% |
| !! | TATTAACAAAAAAAGATTTA+AGG | - | chr5_3:65233767-65233786 | None:intergenic | 10.0% |
| !!! | TTATTATGTTTTTGTTTTAG+GGG | + | chr5_3:65231162-65231181 | Msa0825420:intron | 15.0% |
| !! | TTATGTAATTGTTAACAAAT+TGG | + | chr5_3:65231798-65231817 | Msa0825420:intron | 15.0% |
| !! | CAATTATATAGAAGAAAAAT+TGG | - | chr5_3:65234340-65234359 | None:intergenic | 15.0% |
| !!! | TCTTTTCTTGAAAATTCAAA+AGG | - | chr5_3:65230631-65230650 | None:intergenic | 20.0% |
| !! | ATAAACATCAAAAACCAAAA+GGG | - | chr5_3:65231093-65231112 | None:intergenic | 20.0% |
| !! | AATAAACATCAAAAACCAAA+AGG | - | chr5_3:65231094-65231113 | None:intergenic | 20.0% |
| !!! | TATTATGTTTTTGTTTTAGG+GGG | + | chr5_3:65231163-65231182 | Msa0825420:intron | 20.0% |
| !!! | TTTTTTCAATTACTAGGATT+AGG | + | chr5_3:65231829-65231848 | Msa0825420:intron | 20.0% |
| !! | TGAACAAAGAAAAAAATTGA+TGG | - | chr5_3:65232006-65232025 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTTTCTTTGTTC+AGG | + | chr5_3:65232005-65232024 | Msa0825420:intron | 20.0% |
| !! | GTAAAACACAAAAATATTAG+AGG | - | chr5_3:65232149-65232168 | None:intergenic | 20.0% |
| !! | TATATTTGACAATGAAAGTT+GGG | - | chr5_3:65232507-65232526 | None:intergenic | 20.0% |
| !! | ATATATTTGACAATGAAAGT+TGG | - | chr5_3:65232508-65232527 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTTTGATTTCAT+TGG | - | chr5_3:65232702-65232721 | None:intergenic | 20.0% |
| !!! | TTATTGAATAAATCTAGAGT+AGG | - | chr5_3:65233278-65233297 | None:intergenic | 20.0% |
| !! | TCTAGATTTATTCAATAACA+AGG | + | chr5_3:65233280-65233299 | Msa0825420:intron | 20.0% |
| !! | TCATGTAAGTTGTTAAATAT+AGG | + | chr5_3:65233471-65233490 | Msa0825420:intron | 20.0% |
| !!! | ATAGGATCCTAAATATATTT+TGG | + | chr5_3:65233489-65233508 | Msa0825420:intron | 20.0% |
| !! | CTATGAACCAAAATATATTT+AGG | - | chr5_3:65233499-65233518 | None:intergenic | 20.0% |
| !! | AGTTAAAAGAGAATAACTTA+TGG | - | chr5_3:65233659-65233678 | None:intergenic | 20.0% |
| ! | TCACACAAAAAACATACAAA+AGG | - | chr5_3:65230960-65230979 | None:intergenic | 25.0% |
| ! | CTATCATCATGATAAAAACA+TGG | + | chr5_3:65231001-65231020 | Msa0825420:intron | 25.0% |
| ! | TAAACATCAAAAACCAAAAG+GGG | - | chr5_3:65231092-65231111 | None:intergenic | 25.0% |
| ! | TTTGCAAGTGTTAATATTGA+AGG | + | chr5_3:65231117-65231136 | Msa0825420:intron | 25.0% |
| !!! | CGTTTTTTGTGTTTGTAAAT+CGG | + | chr5_3:65231474-65231493 | Msa0825420:intron | 25.0% |
| !!! | GTTTTTTGTGTTTGTAAATC+GGG | + | chr5_3:65231475-65231494 | Msa0825420:intron | 25.0% |
| !!! | TTAGTTTTTACAGTTATGTG+TGG | - | chr5_3:65231507-65231526 | None:intergenic | 25.0% |
| !!! | TCTGAGTTTTTTCAATTACT+AGG | + | chr5_3:65231823-65231842 | Msa0825420:intron | 25.0% |
| ! | TTATCTATTTCCACTAAAAG+TGG | + | chr5_3:65232281-65232300 | Msa0825420:intron | 25.0% |
| !! | TTACGTTATTTACAGTTTTG+AGG | + | chr5_3:65232366-65232385 | Msa0825420:intron | 25.0% |
| ! | AAGTTTGTCATAATTGATGA+TGG | + | chr5_3:65232406-65232425 | Msa0825420:CDS | 25.0% |
| !!! | TTTTCGTCGTTTTTGTTTAT+AGG | + | chr5_3:65232800-65232819 | Msa0825420:intron | 25.0% |
| ! | TTAGATACCATTGCAATTAA+TGG | + | chr5_3:65232961-65232980 | Msa0825420:CDS | 25.0% |
| ! | TAAAAGTGAAAAACTTTCTC+AGG | - | chr5_3:65233003-65233022 | None:intergenic | 25.0% |
| ! | AATCATTACCTGACATAAAT+AGG | - | chr5_3:65233631-65233650 | None:intergenic | 25.0% |
| !!! | TATGTAATTGTTTGTTGTCT+TGG | + | chr5_3:65233689-65233708 | Msa0825420:intron | 25.0% |
| ! | ATTTGTCAAGTAAGTAAGTT+AGG | - | chr5_3:65234013-65234032 | None:intergenic | 25.0% |
| ! | TTAAAACATACCACAAAGAT+GGG | - | chr5_3:65234286-65234305 | None:intergenic | 25.0% |
| !! | AAAATTGGTGTAACCTTTTT+AGG | - | chr5_3:65234325-65234344 | None:intergenic | 25.0% |
| ! | TGGTAAAAACTTCATATTCT+CGG | - | chr5_3:65234443-65234462 | None:intergenic | 25.0% |
| ! | AACATCTTGATTAAACCAAT+AGG | - | chr5_3:65234507-65234526 | None:intergenic | 25.0% |
| ! | TTAATCAAGATGTTCAATTC+AGG | + | chr5_3:65234513-65234532 | Msa0825420:CDS | 25.0% |
| GTTTCTTTCTCATTTGCATT+TGG | + | chr5_3:65230538-65230557 | Msa0825420:five_prime_UTR | 30.0% | |
| AATTCAAAAGGTTTCAACAG+TGG | - | chr5_3:65230619-65230638 | None:intergenic | 30.0% | |
| TTTCAAGAAAAGATGACTGT+AGG | + | chr5_3:65230638-65230657 | Msa0825420:exon | 30.0% | |
| TTCAAGAAAAGATGACTGTA+GGG | + | chr5_3:65230639-65230658 | Msa0825420:exon | 30.0% | |
| CTGTGTTTGTTTAAGGATTA+AGG | + | chr5_3:65231063-65231082 | Msa0825420:intron | 30.0% | |
| TTGCTTATTGAAACACACAA+GGG | + | chr5_3:65231279-65231298 | Msa0825420:CDS | 30.0% | |
| ! | TATGCATTGTGAATTTTTGC+TGG | + | chr5_3:65231566-65231585 | Msa0825420:intron | 30.0% |
| ! | ATGCATTGTGAATTTTTGCT+GGG | + | chr5_3:65231567-65231586 | Msa0825420:intron | 30.0% |
| !! | GCATTTGTTATGACTTCATA+AGG | - | chr5_3:65231668-65231687 | None:intergenic | 30.0% |
| AAACAAGAACAAAGAAGAAC+TGG | - | chr5_3:65231733-65231752 | None:intergenic | 30.0% | |
| AAGTCCTAATACTGAACTAA+TGG | - | chr5_3:65231899-65231918 | None:intergenic | 30.0% | |
| AAAGTTCATCACTGCAAATT+AGG | - | chr5_3:65231950-65231969 | None:intergenic | 30.0% | |
| GGCATCTGAATAATACAAAT+AGG | - | chr5_3:65232171-65232190 | None:intergenic | 30.0% | |
| ATGTGAAAGAAGGATTACAA+AGG | + | chr5_3:65232256-65232275 | Msa0825420:CDS | 30.0% | |
| !!! | GTTATTTACAGTTTTGAGGA+AGG | + | chr5_3:65232370-65232389 | Msa0825420:intron | 30.0% |
| TCAATTATGACAAACTTAGC+AGG | - | chr5_3:65232403-65232422 | None:intergenic | 30.0% | |
| !! | TTGTCATAATTGATGATGGA+TGG | + | chr5_3:65232410-65232429 | Msa0825420:CDS | 30.0% |
| TTCGACATTGTAAAAATGCA+TGG | - | chr5_3:65232538-65232557 | None:intergenic | 30.0% | |
| GATTCTCTTTGATATGAGTT+AGG | - | chr5_3:65232610-65232629 | None:intergenic | 30.0% | |
| AATCACAAATTCCAGAAAGA+CGG | + | chr5_3:65232626-65232645 | Msa0825420:CDS | 30.0% | |
| AAACGACGAAAAATTTGCAA+CGG | - | chr5_3:65232792-65232811 | None:intergenic | 30.0% | |
| ! | GCTTACAATACTATTTTCCT+TGG | + | chr5_3:65233418-65233437 | Msa0825420:CDS | 30.0% |
| CACAACATTACAAAATCAGA+AGG | - | chr5_3:65233826-65233845 | None:intergenic | 30.0% | |
| ATCAGAAAATAAGCAATCCT+TGG | - | chr5_3:65233944-65233963 | None:intergenic | 30.0% | |
| CATTCATGTTCCATATCTTT+AGG | - | chr5_3:65234083-65234102 | None:intergenic | 30.0% | |
| ACAAAGATGGGAAAATATGA+TGG | - | chr5_3:65234274-65234293 | None:intergenic | 30.0% | |
| ! | ATCATATTTTCCCATCTTTG+TGG | + | chr5_3:65234273-65234292 | Msa0825420:CDS | 30.0% |
| CTTAAAACATACCACAAAGA+TGG | - | chr5_3:65234287-65234306 | None:intergenic | 30.0% | |
| ! | CATCTTTGTGGTATGTTTTA+AGG | + | chr5_3:65234285-65234304 | Msa0825420:intron | 30.0% |
| ! | TGAATTAGTCTATCTTCCAA+AGG | + | chr5_3:65234389-65234408 | Msa0825420:CDS | 30.0% |
| ATTGGAATAGAAACATCCTT+TGG | - | chr5_3:65234408-65234427 | None:intergenic | 30.0% | |
| GGTAAAAACTTCATATTCTC+GGG | - | chr5_3:65234442-65234461 | None:intergenic | 30.0% | |
| ! | AAAGTTGATTACTGCTGATT+CGG | + | chr5_3:65234638-65234657 | Msa0825420:CDS | 30.0% |
| CATTGATATAACTCTTTCTC+CGG | - | chr5_3:65234723-65234742 | None:intergenic | 30.0% | |
| TGAATCACAGAACAGAGAAA+GGG | - | chr5_3:65230592-65230611 | None:intergenic | 35.0% | |
| ATGAATCACAGAACAGAGAA+AGG | - | chr5_3:65230593-65230612 | None:intergenic | 35.0% | |
| TCAAGAAAAGATGACTGTAG+GGG | + | chr5_3:65230640-65230659 | Msa0825420:exon | 35.0% | |
| !! | ATGGAAACTTGATGGTGTTA+GGG | + | chr5_3:65230681-65230700 | Msa0825420:CDS | 35.0% |
| TTGATCAATGGTGCATTTCT+TGG | + | chr5_3:65230764-65230783 | Msa0825420:CDS | 35.0% | |
| TGGTGTTTCTTCTGATCAAA+AGG | + | chr5_3:65230784-65230803 | Msa0825420:CDS | 35.0% | |
| GGTGTTTCTTCTGATCAAAA+GGG | + | chr5_3:65230785-65230804 | Msa0825420:CDS | 35.0% | |
| GTTGACACTGTGTTTGTTTA+AGG | + | chr5_3:65231056-65231075 | Msa0825420:intron | 35.0% | |
| CTTGCTTATTGAAACACACA+AGG | + | chr5_3:65231278-65231297 | Msa0825420:CDS | 35.0% | |
| !! | GTTTTGTTACCTCTTTTGGA+AGG | + | chr5_3:65231363-65231382 | Msa0825420:CDS | 35.0% |
| !! | TCTTTTGGAAGGAGATTTCA+GGG | + | chr5_3:65231374-65231393 | Msa0825420:CDS | 35.0% |
| ATTGAGATTTGTGTCGAAAG+TGG | + | chr5_3:65231426-65231445 | Msa0825420:CDS | 35.0% | |
| ! | GTTTTTACAGTTATGTGTGG+AGG | - | chr5_3:65231504-65231523 | None:intergenic | 35.0% |
| AGAAGAACTGGAAAGTGAAA+AGG | - | chr5_3:65231721-65231740 | None:intergenic | 35.0% | |
| TGCGAAATTTACATCACTGA+TGG | + | chr5_3:65231761-65231780 | Msa0825420:intron | 35.0% | |
| TGCTCCATTAGTTCAGTATT+AGG | + | chr5_3:65231892-65231911 | Msa0825420:intron | 35.0% | |
| !! | ATATGTTGAACTGGTTTGGA+TGG | + | chr5_3:65232193-65232212 | Msa0825420:CDS | 35.0% |
| ACTTCAGAGAATGTGAAAGA+AGG | + | chr5_3:65232246-65232265 | Msa0825420:CDS | 35.0% | |
| !! | GTAACTTAGACCACTTTTAG+TGG | - | chr5_3:65232294-65232313 | None:intergenic | 35.0% |
| !!! | ATTTACAGTTTTGAGGAAGG+TGG | + | chr5_3:65232373-65232392 | Msa0825420:intron | 35.0% |
| TGTTTCCATTCAACACCATT+GGG | - | chr5_3:65232454-65232473 | None:intergenic | 35.0% | |
| ATGTTTCCATTCAACACCAT+TGG | - | chr5_3:65232455-65232474 | None:intergenic | 35.0% | |
| GGTAATATGATGAATTCCCA+TGG | - | chr5_3:65232681-65232700 | None:intergenic | 35.0% | |
| TTTATAGGCATGTGTATGTG+TGG | + | chr5_3:65232815-65232834 | Msa0825420:intron | 35.0% | |
| GGAACATTATGAGTCAAAGA+TGG | + | chr5_3:65232888-65232907 | Msa0825420:CDS | 35.0% | |
| TATCTAATGCTTCATCTGGT+TGG | - | chr5_3:65232948-65232967 | None:intergenic | 35.0% | |
| ATGGTATCTAATGCTTCATC+TGG | - | chr5_3:65232952-65232971 | None:intergenic | 35.0% | |
| !! | ACCATTGCAATTAATGGACT+CGG | + | chr5_3:65232967-65232986 | Msa0825420:CDS | 35.0% |
| AAACTTTCTCAGGATTCACA+AGG | - | chr5_3:65232993-65233012 | None:intergenic | 35.0% | |
| CAGAATATCCTTGAAACTCT+TGG | + | chr5_3:65233081-65233100 | Msa0825420:CDS | 35.0% | |
| ACTTGCAAGGAAATATCATC+AGG | + | chr5_3:65233128-65233147 | Msa0825420:CDS | 35.0% | |
| AAGGAAATATCATCAGGCAT+TGG | + | chr5_3:65233134-65233153 | Msa0825420:CDS | 35.0% | |
| TCTAGGAACTTTCCTGATAA+CGG | + | chr5_3:65233168-65233187 | Msa0825420:CDS | 35.0% | |
| CAACAAATGATTCCGTTATC+AGG | - | chr5_3:65233183-65233202 | None:intergenic | 35.0% | |
| !! | ACAATACAGACGGATTGTAT+AGG | + | chr5_3:65233211-65233230 | Msa0825420:CDS | 35.0% |
| TTAGAGCTTCAGATGATTTC+TGG | + | chr5_3:65233353-65233372 | Msa0825420:CDS | 35.0% | |
| TCACACAATTCACATTGCAT+CGG | + | chr5_3:65233393-65233412 | Msa0825420:CDS | 35.0% | |
| TGAATTTATGCAGCCAGATT+GGG | + | chr5_3:65233441-65233460 | Msa0825420:CDS | 35.0% | |
| ACATGAAACATATCCCAATC+TGG | - | chr5_3:65233457-65233476 | None:intergenic | 35.0% | |
| TGGTTCATAGAAAATGTGCT+AGG | + | chr5_3:65233509-65233528 | Msa0825420:intron | 35.0% | |
| AGAAAATGTGCTAGGATTTC+AGG | + | chr5_3:65233517-65233536 | Msa0825420:intron | 35.0% | |
| TCTTCAAAAGATTGAAGTCG+TGG | - | chr5_3:65233867-65233886 | None:intergenic | 35.0% | |
| ATATTAAGAGCCAAACTTCC+AGG | + | chr5_3:65233910-65233929 | Msa0825420:CDS | 35.0% | |
| GAAAATAAGCAATCCTTGGT+TGG | - | chr5_3:65233940-65233959 | None:intergenic | 35.0% | |
| ATTGCAGTCTCCTAAAGATA+TGG | + | chr5_3:65234070-65234089 | Msa0825420:intron | 35.0% | |
| TGGAACATGAATGACTATTC+TGG | + | chr5_3:65234090-65234109 | Msa0825420:CDS | 35.0% | |
| !! | AATGACTATTCTGGAGTTGT+TGG | + | chr5_3:65234099-65234118 | Msa0825420:CDS | 35.0% |
| !! | ATGACTATTCTGGAGTTGTT+GGG | + | chr5_3:65234100-65234119 | Msa0825420:CDS | 35.0% |
| TTTACACCACACTCCTAAAA+AGG | + | chr5_3:65234309-65234328 | Msa0825420:intron | 35.0% | |
| TGTTTACGATGTTTGTTTGC+AGG | + | chr5_3:65234366-65234385 | Msa0825420:intron | 35.0% | |
| TTCATATTCTCGGGATTTCA+TGG | - | chr5_3:65234433-65234452 | None:intergenic | 35.0% | |
| ATCAAGATGTTCAATTCAGG+AGG | + | chr5_3:65234516-65234535 | Msa0825420:CDS | 35.0% | |
| TCAAGATGTTCAATTCAGGA+GGG | + | chr5_3:65234517-65234536 | Msa0825420:CDS | 35.0% | |
| !!! | GAGTTCAGTTCTGGTTTTAA+TGG | + | chr5_3:65234549-65234568 | Msa0825420:CDS | 35.0% |
| GAATCAGCAGTAATCAACTT+TGG | - | chr5_3:65234639-65234658 | None:intergenic | 35.0% | |
| ATTCAGTTACGAGGAAGAAT+CGG | + | chr5_3:65234671-65234690 | Msa0825420:CDS | 35.0% | |
| CGGAGAAAGAGTTATATCAA+TGG | + | chr5_3:65234721-65234740 | Msa0825420:CDS | 35.0% | |
| !! | GAACAAAGAGCATTGCTGAA+GGG | + | chr5_3:65230560-65230579 | Msa0825420:five_prime_UTR | 40.0% |
| TGTTGCTGATGGAAACTTGA+TGG | + | chr5_3:65230673-65230692 | Msa0825420:CDS | 40.0% | |
| !! | GATGGAAACTTGATGGTGTT+AGG | + | chr5_3:65230680-65230699 | Msa0825420:CDS | 40.0% |
| TCTGGTGGTTCTTTGATCAA+TGG | + | chr5_3:65230752-65230771 | Msa0825420:CDS | 40.0% | |
| ACATACTCAAGCTTGCCAAT+AGG | - | chr5_3:65230827-65230846 | None:intergenic | 40.0% | |
| ! | GTCTTTTCCGCTTCAAAATG+TGG | + | chr5_3:65231199-65231218 | Msa0825420:CDS | 40.0% |
| ! | TTTTCCGCTTCAAAATGTGG+TGG | + | chr5_3:65231202-65231221 | Msa0825420:CDS | 40.0% |
| !! | TCATCCACCACATTTTGAAG+CGG | - | chr5_3:65231209-65231228 | None:intergenic | 40.0% |
| AGCAAGAACTGTGTCTCAAA+GGG | - | chr5_3:65231264-65231283 | None:intergenic | 40.0% | |
| AAGCAAGAACTGTGTCTCAA+AGG | - | chr5_3:65231265-65231284 | None:intergenic | 40.0% | |
| CACAAGGGTTGTGATATTGA+CGG | + | chr5_3:65231294-65231313 | Msa0825420:CDS | 40.0% | |
| CTGAAATCTCCTTCCAAAAG+AGG | - | chr5_3:65231375-65231394 | None:intergenic | 40.0% | |
| !! | CTCTTTTGGAAGGAGATTTC+AGG | + | chr5_3:65231373-65231392 | Msa0825420:CDS | 40.0% |
| CTGATGTGGAGGAATTTGAT+GGG | + | chr5_3:65231609-65231628 | Msa0825420:CDS | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | + | chr5_3:65231619-65231638 | Msa0825420:CDS | 40.0% | |
| !! | GGACTCATTTGGTGTTCATT+GGG | + | chr5_3:65231630-65231649 | Msa0825420:CDS | 40.0% |
| !! | GACTCATTTGGTGTTCATTG+GGG | + | chr5_3:65231631-65231650 | Msa0825420:CDS | 40.0% |
| ATGAACTTTAAGCTGCGACA+AGG | - | chr5_3:65232124-65232143 | None:intergenic | 40.0% | |
| AGATGCCAGATATGTTGAAC+TGG | + | chr5_3:65232184-65232203 | Msa0825420:intron | 40.0% | |
| CCAAACCAGTTCAACATATC+TGG | - | chr5_3:65232192-65232211 | None:intergenic | 40.0% | |
| CCAGATATGTTGAACTGGTT+TGG | + | chr5_3:65232189-65232208 | Msa0825420:CDS | 40.0% | |
| GTTTCCATTCAACACCATTG+GGG | - | chr5_3:65232453-65232472 | None:intergenic | 40.0% | |
| TATGATGAATTCCCATGGCA+GGG | - | chr5_3:65232676-65232695 | None:intergenic | 40.0% | |
| ATATGATGAATTCCCATGGC+AGG | - | chr5_3:65232677-65232696 | None:intergenic | 40.0% | |
| GCACGCAATAACAGGATATT+GGG | + | chr5_3:65232837-65232856 | Msa0825420:CDS | 40.0% | |
| CACGCAATAACAGGATATTG+GGG | + | chr5_3:65232838-65232857 | Msa0825420:CDS | 40.0% | |
| TAATGCTTCATCTGGTTGGT+TGG | - | chr5_3:65232944-65232963 | None:intergenic | 40.0% | |
| TTTGACACCATCAATACCAG+CGG | - | chr5_3:65233052-65233071 | None:intergenic | 40.0% | |
| !! | GAAATATCATCAGGCATTGG+AGG | + | chr5_3:65233137-65233156 | Msa0825420:CDS | 40.0% |
| TGCATGAGTCACAATACAGA+CGG | + | chr5_3:65233201-65233220 | Msa0825420:CDS | 40.0% | |
| !! | TACAGACGGATTGTATAGGT+AGG | + | chr5_3:65233215-65233234 | Msa0825420:intron | 40.0% |
| ! | TTGATGCAGTTCAAAGCGTT+CGG | + | chr5_3:65233324-65233343 | Msa0825420:intron | 40.0% |
| TGTGAATTGTGTGAGATGCA+GGG | - | chr5_3:65233387-65233406 | None:intergenic | 40.0% | |
| ATGTGAATTGTGTGAGATGC+AGG | - | chr5_3:65233388-65233407 | None:intergenic | 40.0% | |
| GTGAATTTATGCAGCCAGAT+TGG | + | chr5_3:65233440-65233459 | Msa0825420:CDS | 40.0% | |
| ATTTCAGAGTCTTCATCCGA+TGG | + | chr5_3:65233567-65233586 | Msa0825420:intron | 40.0% | |
| GAGGATGTCCTATTTATGTC+AGG | + | chr5_3:65233620-65233639 | Msa0825420:CDS | 40.0% | |
| AAGAAGCTTGTACTTCCTGA+CGG | + | chr5_3:65233883-65233902 | Msa0825420:CDS | 40.0% | |
| GCTCTTAATATAGAACCGTC+AGG | - | chr5_3:65233901-65233920 | None:intergenic | 40.0% | |
| ! | TTTTCTGATCCTGCTAGAGA+TGG | + | chr5_3:65233955-65233974 | Msa0825420:CDS | 40.0% |
| ! | ATCAGCTTGTTCTTTGCTCA+TGG | + | chr5_3:65234039-65234058 | Msa0825420:intron | 40.0% |
| !! | TGACTATTCTGGAGTTGTTG+GGG | + | chr5_3:65234101-65234120 | Msa0825420:CDS | 40.0% |
| ! | GTTGGGGTATTCAATTGTCA+AGG | + | chr5_3:65234117-65234136 | Msa0825420:CDS | 40.0% |
| GTATTCAATTGTCAAGGAGC+TGG | + | chr5_3:65234123-65234142 | Msa0825420:CDS | 40.0% | |
| CACAGTCACTGACATCATTA+GGG | + | chr5_3:65234194-65234213 | Msa0825420:CDS | 40.0% | |
| TATCGACCATTTATCGACAG+TGG | + | chr5_3:65234224-65234243 | Msa0825420:CDS | 40.0% | |
| !! | GTGTAACCTTTTTAGGAGTG+TGG | - | chr5_3:65234318-65234337 | None:intergenic | 40.0% |
| TCTCGGGATTTCATGGTAAT+TGG | - | chr5_3:65234426-65234445 | None:intergenic | 40.0% | |
| ! | TTTTACCATAGTCCCTGTGA+CGG | + | chr5_3:65234455-65234474 | Msa0825420:CDS | 40.0% |
| ! | CATTTGGTAATTCCGTCACA+GGG | - | chr5_3:65234470-65234489 | None:intergenic | 40.0% |
| GGAGCAAATTTGACACCATT+TGG | - | chr5_3:65234486-65234505 | None:intergenic | 40.0% | |
| ! | GGTGTCAAATTTGCTCCTAT+TGG | + | chr5_3:65234489-65234508 | Msa0825420:CDS | 40.0% |
| CAAGATGTTCAATTCAGGAG+GGG | + | chr5_3:65234518-65234537 | Msa0825420:CDS | 40.0% | |
| ! | AATGTTTCCATGAAAGTGCG+CGG | + | chr5_3:65234579-65234598 | Msa0825420:CDS | 40.0% |
| !! | CTGATGAATAAGCACCGAAA+AGG | - | chr5_3:65234611-65234630 | None:intergenic | 40.0% |
| TTCAGTTACGAGGAAGAATC+GGG | + | chr5_3:65234672-65234691 | Msa0825420:CDS | 40.0% | |
| GACTATCAATTTGAGTGTGC+CGG | + | chr5_3:65234701-65234720 | Msa0825420:CDS | 40.0% | |
| !! | GGAACAAAGAGCATTGCTGA+AGG | + | chr5_3:65230559-65230578 | Msa0825420:five_prime_UTR | 45.0% |
| GCAGGAATATCTGTTGCTGA+TGG | + | chr5_3:65230662-65230681 | Msa0825420:CDS | 45.0% | |
| !! | CTTGATGGTGTTAGGGAAGA+AGG | + | chr5_3:65230688-65230707 | Msa0825420:CDS | 45.0% |
| GTTCTTGTTACTCCTGCTTC+TGG | + | chr5_3:65230734-65230753 | Msa0825420:CDS | 45.0% | |
| ATCAAAGAACCACCAGAAGC+AGG | - | chr5_3:65230749-65230768 | None:intergenic | 45.0% | |
| AGTCGCAGAGTCTTTCCTAT+TGG | + | chr5_3:65230809-65230828 | Msa0825420:CDS | 45.0% | |
| ! | TGGTGGATGACTCAGAGAAT+GGG | + | chr5_3:65231219-65231238 | Msa0825420:CDS | 45.0% |
| ACTCAGAGAATGGGTAACTG+TGG | + | chr5_3:65231228-65231247 | Msa0825420:CDS | 45.0% | |
| GCAAGAACTGTGTCTCAAAG+GGG | - | chr5_3:65231263-65231282 | None:intergenic | 45.0% | |
| AAGGGTTGTGATATTGACGG+AGG | + | chr5_3:65231297-65231316 | Msa0825420:CDS | 45.0% | |
| AGGGTTGTGATATTGACGGA+GGG | + | chr5_3:65231298-65231317 | Msa0825420:CDS | 45.0% | |
| GACAATGGAGAACAAGACCA+AGG | + | chr5_3:65231324-65231343 | Msa0825420:CDS | 45.0% | |
| AATGGAGAACAAGACCAAGG+TGG | + | chr5_3:65231327-65231346 | Msa0825420:CDS | 45.0% | |
| AAGAGGTAACAAAACCGCGT+AGG | - | chr5_3:65231358-65231377 | None:intergenic | 45.0% | |
| !!! | CGCGGTTTTGTTACCTCTTT+TGG | + | chr5_3:65231359-65231378 | Msa0825420:CDS | 45.0% |
| AGATTTCAGGGCTGTTCTTC+AGG | + | chr5_3:65231386-65231405 | Msa0825420:CDS | 45.0% | |
| GATTTCAGGGCTGTTCTTCA+GGG | + | chr5_3:65231387-65231406 | Msa0825420:CDS | 45.0% | |
| ATTTCAGGGCTGTTCTTCAG+GGG | + | chr5_3:65231388-65231407 | Msa0825420:CDS | 45.0% | |
| ! | ACTAAACCATCGAGTTGCCT+AGG | + | chr5_3:65231522-65231541 | Msa0825420:intron | 45.0% |
| TTTGCTGGGTGCATGATTGT+AGG | + | chr5_3:65231581-65231600 | Msa0825420:intron | 45.0% | |
| GATTGTAGGATGTCCTGATG+TGG | + | chr5_3:65231595-65231614 | Msa0825420:intron | 45.0% | |
| CCATCAAATTCCTCCACATC+AGG | - | chr5_3:65231611-65231630 | None:intergenic | 45.0% | |
| CCTGATGTGGAGGAATTTGA+TGG | + | chr5_3:65231608-65231627 | Msa0825420:CDS | 45.0% | |
| !! | GGGACTCATTTGGTGTTCAT+TGG | + | chr5_3:65231629-65231648 | Msa0825420:CDS | 45.0% |
| TTGTCATCGCGAGAGAAAGA+AGG | + | chr5_3:65232054-65232073 | Msa0825420:CDS | 45.0% | |
| !! | ACTGGTTTGGATGGTGTACA+TGG | + | chr5_3:65232202-65232221 | Msa0825420:CDS | 45.0% |
| !! | CTGGTTTGGATGGTGTACAT+GGG | + | chr5_3:65232203-65232222 | Msa0825420:CDS | 45.0% |
| !! | CACATTCTCTGAAGTGACGT+TGG | - | chr5_3:65232241-65232260 | None:intergenic | 45.0% |
| TGGATGGCAATCTGTTAGCA+TGG | + | chr5_3:65232426-65232445 | Msa0825420:CDS | 45.0% | |
| CAAATTCCAGAAAGACGGCA+AGG | + | chr5_3:65232631-65232650 | Msa0825420:CDS | 45.0% | |
| TATGTGTGGCACGCAATAAC+AGG | + | chr5_3:65232829-65232848 | Msa0825420:CDS | 45.0% | |
| GGCACGCAATAACAGGATAT+TGG | + | chr5_3:65232836-65232855 | Msa0825420:CDS | 45.0% | |
| GCAATAACAGGATATTGGGG+TGG | + | chr5_3:65232841-65232860 | Msa0825420:CDS | 45.0% | |
| ! | TATTGGGGTGGTGTTAAACC+TGG | + | chr5_3:65232853-65232872 | Msa0825420:CDS | 45.0% |
| ! | ATTGGGGTGGTGTTAAACCT+GGG | + | chr5_3:65232854-65232873 | Msa0825420:CDS | 45.0% |
| GGTGTTAAACCTGGGATTAG+TGG | + | chr5_3:65232862-65232881 | Msa0825420:CDS | 45.0% | |
| ! | TAAACCTGGGATTAGTGGCA+TGG | + | chr5_3:65232867-65232886 | Msa0825420:CDS | 45.0% |
| TGACTCCAGGAGATGAGATA+GGG | - | chr5_3:65232918-65232937 | None:intergenic | 45.0% | |
| TTGACTCCAGGAGATGAGAT+AGG | - | chr5_3:65232919-65232938 | None:intergenic | 45.0% | |
| GCCGAGTCCATTAATTGCAA+TGG | - | chr5_3:65232971-65232990 | None:intergenic | 45.0% | |
| ATCCTTGAAACTCTTGGAGC+AGG | + | chr5_3:65233087-65233106 | Msa0825420:CDS | 45.0% | |
| CTGGCTGCATAAATTCACCA+AGG | - | chr5_3:65233438-65233457 | None:intergenic | 45.0% | |
| GCAGCATGATATTCAGCCAT+CGG | - | chr5_3:65233586-65233605 | None:intergenic | 45.0% | |
| AAGATTGAAGTCGTGGTGTC+CGG | - | chr5_3:65233860-65233879 | None:intergenic | 45.0% | |
| ATCCTGCTAGAGATGGAAAG+AGG | + | chr5_3:65233962-65233981 | Msa0825420:CDS | 45.0% | |
| TACCTCTTTCCATCTCTAGC+AGG | - | chr5_3:65233967-65233986 | None:intergenic | 45.0% | |
| TCAATTGTCAAGGAGCTGGT+TGG | + | chr5_3:65234127-65234146 | Msa0825420:CDS | 45.0% | |
| GCACAGTCACTGACATCATT+AGG | + | chr5_3:65234193-65234212 | Msa0825420:CDS | 45.0% | |
| CATCTGCCACTGTCGATAAA+TGG | - | chr5_3:65234233-65234252 | None:intergenic | 45.0% | |
| CGACAGTGGCAGATGATAAA+TGG | + | chr5_3:65234238-65234257 | Msa0825420:CDS | 45.0% | |
| GTGGCAGATGATAAATGGAC+AGG | + | chr5_3:65234243-65234262 | Msa0825420:CDS | 45.0% | |
| TAATTCCGTCACAGGGACTA+TGG | - | chr5_3:65234463-65234482 | None:intergenic | 45.0% | |
| ! | CCATTTGGTAATTCCGTCAC+AGG | - | chr5_3:65234471-65234490 | None:intergenic | 45.0% |
| ! | CCTGTGACGGAATTACCAAA+TGG | + | chr5_3:65234468-65234487 | Msa0825420:CDS | 45.0% |
| GCAGTCAAAGAGTTCAGTTC+TGG | + | chr5_3:65234540-65234559 | Msa0825420:CDS | 45.0% | |
| ! | ATGTTTCCATGAAAGTGCGC+GGG | + | chr5_3:65234580-65234599 | Msa0825420:CDS | 45.0% |
| !! | GATTACTGCTGATTCGGAAG+AGG | + | chr5_3:65234644-65234663 | Msa0825420:CDS | 45.0% |
| AGAGGTGGAATTCAGTTACG+AGG | + | chr5_3:65234662-65234681 | Msa0825420:CDS | 45.0% | |
| TTACGAGGAAGAATCGGGAT+TGG | + | chr5_3:65234677-65234696 | Msa0825420:CDS | 45.0% | |
| GAAAAGATGACTGTAGGGGC+AGG | + | chr5_3:65230644-65230663 | Msa0825420:exon | 50.0% | |
| !! | AGGGAAGAAGGTTCTGAGTC+AGG | + | chr5_3:65230700-65230719 | Msa0825420:CDS | 50.0% |
| CTTGTTACTCCTGCTTCTGG+TGG | + | chr5_3:65230737-65230756 | Msa0825420:CDS | 50.0% | |
| ! | AGGATTAAGGCGACCCCTTT+TGG | + | chr5_3:65231076-65231095 | Msa0825420:intron | 50.0% |
| !! | GTGGTGGATGACTCAGAGAA+TGG | + | chr5_3:65231218-65231237 | Msa0825420:CDS | 50.0% |
| ATTGACGGAGGGATCGACAA+TGG | + | chr5_3:65231309-65231328 | Msa0825420:CDS | 50.0% | |
| GGTAACAAAACCGCGTAGGT+AGG | - | chr5_3:65231354-65231373 | None:intergenic | 50.0% | |
| TGTGATCCTAGGCAACTCGA+TGG | - | chr5_3:65231531-65231550 | None:intergenic | 50.0% | |
| AGTCTCAGCACTGTGATCCT+AGG | - | chr5_3:65231542-65231561 | None:intergenic | 50.0% | |
| TGTAGGATGTCCTGATGTGG+AGG | + | chr5_3:65231598-65231617 | Msa0825420:intron | 50.0% | |
| !! | CATTTGGTGTTCATTGGGGC+TGG | + | chr5_3:65231635-65231654 | Msa0825420:CDS | 50.0% |
| TCTGTTAGCATGGACCCCAA+TGG | + | chr5_3:65232436-65232455 | Msa0825420:CDS | 50.0% | |
| ! | TGGACCCCAATGGTGTTGAA+TGG | + | chr5_3:65232446-65232465 | Msa0825420:CDS | 50.0% |
| TTCCAGAAAGACGGCAAGGA+AGG | + | chr5_3:65232635-65232654 | Msa0825420:CDS | 50.0% | |
| AAGACGGCAAGGAAGGTCAT+CGG | + | chr5_3:65232642-65232661 | Msa0825420:CDS | 50.0% | |
| CAAGGAAGGTCATCGGATAG+AGG | + | chr5_3:65232649-65232668 | Msa0825420:CDS | 50.0% | |
| TGTTCCATGCCACTAATCCC+AGG | - | chr5_3:65232874-65232893 | None:intergenic | 50.0% | |
| GCTTTCCCTATCTCATCTCC+TGG | + | chr5_3:65232910-65232929 | Msa0825420:CDS | 50.0% | |
| CAGCGGATGCTAGATATGAG+TGG | - | chr5_3:65233035-65233054 | None:intergenic | 50.0% | |
| CACTCATATCTAGCATCCGC+TGG | + | chr5_3:65233033-65233052 | Msa0825420:CDS | 50.0% | |
| ! | CTAGCATCCGCTGGTATTGA+TGG | + | chr5_3:65233042-65233061 | Msa0825420:CDS | 50.0% |
| GTCCTGCTCCAAGAGTTTCA+AGG | - | chr5_3:65233092-65233111 | None:intergenic | 50.0% | |
| GAAACTCTTGGAGCAGGACA+TGG | + | chr5_3:65233093-65233112 | Msa0825420:CDS | 50.0% | |
| !! | CATTGGAGGCATCGATCTCT+AGG | + | chr5_3:65233151-65233170 | Msa0825420:CDS | 50.0% |
| ATGTTGTGTAGCGACAAGCC+CGG | + | chr5_3:65233838-65233857 | Msa0825420:intron | 50.0% | |
| AGATTGAAGTCGTGGTGTCC+GGG | - | chr5_3:65233859-65233878 | None:intergenic | 50.0% | |
| !! | GGTTGGTCTTCCTGGAAGTT+TGG | - | chr5_3:65233923-65233942 | None:intergenic | 50.0% |
| ACTTCCAGGAAGACCAACCA+AGG | + | chr5_3:65233924-65233943 | Msa0825420:CDS | 50.0% | |
| !! | CAATCCTTGGTTGGTCTTCC+TGG | - | chr5_3:65233931-65233950 | None:intergenic | 50.0% |
| CTGGATTCTCGTCGTGGATA+AGG | - | chr5_3:65234173-65234192 | None:intergenic | 50.0% | |
| CTTATCCACGACGAGAATCC+AGG | + | chr5_3:65234171-65234190 | Msa0825420:CDS | 50.0% | |
| ATGATGTCAGTGACTGTGCC+TGG | - | chr5_3:65234192-65234211 | None:intergenic | 50.0% | |
| !! | TACTGCTGATTCGGAAGAGG+TGG | + | chr5_3:65234647-65234666 | Msa0825420:CDS | 50.0% |
| GACCTTCCTTGCCGTCTTTC+TGG | - | chr5_3:65232640-65232659 | None:intergenic | 55.0% | |
| ! | GGTTGGTTGGACTTGACTCC+AGG | - | chr5_3:65232931-65232950 | None:intergenic | 55.0% |
| ACTCTTGGAGCAGGACATGG+TGG | + | chr5_3:65233096-65233115 | Msa0825420:CDS | 55.0% | |
| CTCTTGGAGCAGGACATGGT+GGG | + | chr5_3:65233097-65233116 | Msa0825420:CDS | 55.0% | |
| GTGGGAGGGTGAAACTTGCA+AGG | + | chr5_3:65233115-65233134 | Msa0825420:CDS | 55.0% | |
| GTGTGAGATGCAGGGTCTCT+TGG | - | chr5_3:65233379-65233398 | None:intergenic | 55.0% | |
| CATGCTGCTGCAAGAGCAGT+TGG | + | chr5_3:65233598-65233617 | Msa0825420:CDS | 55.0% | |
| ! | GGAGCTGGTTGGTGCAAAGT+TGG | + | chr5_3:65234138-65234157 | Msa0825420:CDS | 55.0% |
| CCAAGGTGGTCCTACCTACG+CGG | + | chr5_3:65231341-65231360 | Msa0825420:CDS | 60.0% | |
| TCGGATAGAGGACCCTGCCA+TGG | + | chr5_3:65232661-65232680 | Msa0825420:CDS | 60.0% | |
| CGGATAGAGGACCCTGCCAT+GGG | + | chr5_3:65232662-65232681 | Msa0825420:CDS | 60.0% | |
| ! | TTGGAGCAGGACATGGTGGG+AGG | + | chr5_3:65233100-65233119 | Msa0825420:CDS | 60.0% |
| ! | TGGAGCAGGACATGGTGGGA+GGG | + | chr5_3:65233101-65233120 | Msa0825420:CDS | 60.0% |
| GCTGCTGCAAGAGCAGTTGG+AGG | + | chr5_3:65233601-65233620 | Msa0825420:CDS | 60.0% | |
| CTGTGCCTGGATTCTCGTCG+TGG | - | chr5_3:65234179-65234198 | None:intergenic | 60.0% | |
| ! | TCCATGAAAGTGCGCGGGTG+TGG | + | chr5_3:65234585-65234604 | Msa0825420:CDS | 60.0% |
| CCGCGTAGGTAGGACCACCT+TGG | - | chr5_3:65231344-65231363 | None:intergenic | 65.0% | |
| GCCACACCCGCGCACTTTCA+TGG | - | chr5_3:65234589-65234608 | None:intergenic | 65.0% | |
| ! | GTGCGCGGGTGTGGCCTTTT+CGG | + | chr5_3:65234594-65234613 | Msa0825420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 65230531 | 65234764 | 65230531 | ID=Msa0825420;Name=Msa0825420 |
| chr5_3 | mRNA | 65230531 | 65234764 | 65230531 | ID=Msa0825420-mRNA-1;Parent=Msa0825420;Name=Msa0825420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=119|1|0.92|1|1|1|13|0|760 |
| chr5_3 | exon | 65230531 | 65230840 | 65230531 | ID=Msa0825420-mRNA-1:exon:20435;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65231182 | 65231447 | 65231182 | ID=Msa0825420-mRNA-1:exon:20436;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65231603 | 65231693 | 65231603 | ID=Msa0825420-mRNA-1:exon:20437;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65232027 | 65232075 | 65232027 | ID=Msa0825420-mRNA-1:exon:20438;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65232186 | 65232277 | 65232186 | ID=Msa0825420-mRNA-1:exon:20439;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65232381 | 65232488 | 65232381 | ID=Msa0825420-mRNA-1:exon:20440;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65232595 | 65232729 | 65232595 | ID=Msa0825420-mRNA-1:exon:20441;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65232822 | 65233232 | 65232822 | ID=Msa0825420-mRNA-1:exon:20442;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65233333 | 65233474 | 65233333 | ID=Msa0825420-mRNA-1:exon:20443;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65233574 | 65233641 | 65233574 | ID=Msa0825420-mRNA-1:exon:20444;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65233849 | 65233983 | 65233849 | ID=Msa0825420-mRNA-1:exon:20445;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65234077 | 65234294 | 65234077 | ID=Msa0825420-mRNA-1:exon:20446;Parent=Msa0825420-mRNA-1 |
| chr5_3 | exon | 65234388 | 65234764 | 65234388 | ID=Msa0825420-mRNA-1:exon:20447;Parent=Msa0825420-mRNA-1 |
| chr5_3 | five_prime_UTR | 65230531 | 65230649 | 65230531 | ID=Msa0825420-mRNA-1:five_prime_utr;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65230650 | 65230840 | 65230650 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65231182 | 65231447 | 65231182 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65231603 | 65231693 | 65231603 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65232027 | 65232075 | 65232027 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65232186 | 65232277 | 65232186 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65232381 | 65232488 | 65232381 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65232595 | 65232729 | 65232595 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65232822 | 65233232 | 65232822 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65233333 | 65233474 | 65233333 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65233574 | 65233641 | 65233574 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65233849 | 65233983 | 65233849 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65234077 | 65234294 | 65234077 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| chr5_3 | CDS | 65234388 | 65234764 | 65234388 | ID=Msa0825420-mRNA-1:cds;Parent=Msa0825420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
