Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945040 | XP_024639978.1 | 97.105 | 760 | 22 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945040 | sp|Q84VX0|RFS1_ARATH | 71.711 | 760 | 206 | 4 | 1 | 758 | 1 | 753 | 0.0 | 1125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945040 | G7K4U6 | 97.105 | 760 | 22 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0788250 | Msa0945040 | 0.997140 | 1.608727e-237 | -8.615850e-47 |
| Msa0825420 | Msa0945040 | 0.912322 | 2.225121e-83 | -8.615850e-47 |
| Msa0826370 | Msa0945040 | 0.802644 | 5.088417e-49 | -8.615850e-47 |
| Msa0198140 | Msa0945040 | -0.801437 | 9.007170e-49 | -8.615850e-47 |
| Msa0864610 | Msa0945040 | 0.910068 | 2.829493e-82 | -8.615850e-47 |
| Msa0945040 | Msa1401820 | 0.950583 | 1.220875e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945040 | MtrunA17_Chr5g0447201 | 97.105 | 760 | 22 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1535 |
| Msa0945040 | MtrunA17_Chr1g0173521 | 58.816 | 760 | 293 | 2 | 1 | 760 | 58 | 797 | 0.0 | 942 |
| Msa0945040 | MtrunA17_Chr4g0064311 | 54.183 | 753 | 316 | 7 | 1 | 750 | 98 | 824 | 0.0 | 844 |
| Msa0945040 | MtrunA17_Chr7g0257731 | 58.966 | 619 | 226 | 4 | 165 | 760 | 1 | 614 | 0.0 | 772 |
| Msa0945040 | MtrunA17_Chr3g0116641 | 47.193 | 748 | 381 | 5 | 1 | 744 | 1 | 738 | 0.0 | 724 |
| Msa0945040 | MtrunA17_Chr6g0449521 | 38.860 | 772 | 426 | 15 | 7 | 756 | 35 | 782 | 0.0 | 541 |
| Msa0945040 | MtrunA17_Chr4g0058701 | 39.300 | 771 | 390 | 15 | 7 | 735 | 22 | 756 | 0.0 | 539 |
| Msa0945040 | MtrunA17_Chr3g0117141 | 38.562 | 765 | 420 | 12 | 7 | 742 | 28 | 771 | 7.12e-179 | 531 |
| Msa0945040 | MtrunA17_Chr7g0267991 | 37.684 | 475 | 264 | 8 | 291 | 747 | 384 | 844 | 1.16e-94 | 313 |
| Msa0945040 | MtrunA17_Chr7g0267991 | 34.818 | 247 | 137 | 3 | 42 | 282 | 71 | 299 | 5.79e-41 | 161 |
| Msa0945040 | MtrunA17_Chr5g0427081 | 96.454 | 141 | 5 | 0 | 520 | 660 | 10 | 150 | 4.28e-92 | 285 |
| Msa0945040 | MtrunA17_Chr8g0380141 | 43.709 | 302 | 157 | 4 | 296 | 587 | 380 | 678 | 3.85e-78 | 265 |
| Msa0945040 | MtrunA17_Chr8g0380141 | 34.959 | 246 | 138 | 4 | 42 | 282 | 70 | 298 | 1.36e-41 | 162 |
| Msa0945040 | MtrunA17_Chr1g0201161 | 41.883 | 308 | 164 | 5 | 284 | 579 | 370 | 674 | 2.88e-70 | 248 |
| Msa0945040 | MtrunA17_Chr1g0201161 | 33.865 | 251 | 134 | 4 | 42 | 282 | 75 | 303 | 3.79e-39 | 156 |
| Msa0945040 | MtrunA17_Chr1g0201161 | 29.885 | 174 | 114 | 4 | 570 | 739 | 734 | 903 | 1.71e-13 | 74.3 |
| Msa0945040 | MtrunA17_Chr7g0270181 | 36.975 | 357 | 204 | 6 | 401 | 747 | 4 | 349 | 7.18e-65 | 220 |
| Msa0945040 | MtrunA17_Chr7g0257741 | 57.516 | 153 | 55 | 2 | 1 | 152 | 1 | 144 | 1.05e-50 | 174 |
| Msa0945040 | MtrunA17_Chr3g0139771 | 78.261 | 69 | 15 | 0 | 681 | 749 | 1 | 69 | 6.15e-16 | 73.6 |
| Msa0945040 | MtrunA17_Chr8g0380131 | 38.043 | 92 | 54 | 1 | 642 | 733 | 3 | 91 | 1.46e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945040 | AT1G55740.1 | 71.711 | 760 | 206 | 4 | 1 | 758 | 1 | 753 | 0.0 | 1125 |
| Msa0945040 | AT3G57520.1 | 59.335 | 782 | 283 | 4 | 1 | 758 | 1 | 771 | 0.0 | 991 |
| Msa0945040 | AT3G57520.2 | 62.969 | 667 | 236 | 2 | 1 | 667 | 1 | 656 | 0.0 | 912 |
| Msa0945040 | AT5G20250.4 | 54.290 | 746 | 325 | 6 | 1 | 744 | 96 | 827 | 0.0 | 851 |
| Msa0945040 | AT5G20250.3 | 54.290 | 746 | 325 | 6 | 1 | 744 | 1 | 732 | 0.0 | 850 |
| Msa0945040 | AT5G20250.1 | 54.290 | 746 | 325 | 6 | 1 | 744 | 1 | 732 | 0.0 | 850 |
| Msa0945040 | AT5G20250.2 | 54.290 | 746 | 325 | 6 | 1 | 744 | 1 | 732 | 0.0 | 850 |
| Msa0945040 | AT3G57520.3 | 62.852 | 568 | 197 | 3 | 1 | 568 | 1 | 554 | 0.0 | 774 |
| Msa0945040 | AT5G40390.1 | 38.262 | 771 | 425 | 16 | 9 | 748 | 24 | 774 | 1.76e-177 | 528 |
| Msa0945040 | AT4G01970.1 | 37.634 | 465 | 268 | 10 | 296 | 742 | 398 | 858 | 9.92e-97 | 320 |
| Msa0945040 | AT4G01970.1 | 33.544 | 316 | 160 | 7 | 21 | 305 | 49 | 345 | 2.14e-42 | 166 |
| Msa0945040 | AT4G01970.2 | 37.634 | 465 | 268 | 10 | 296 | 742 | 445 | 905 | 3.67e-96 | 319 |
| Msa0945040 | AT4G01970.2 | 33.544 | 316 | 160 | 7 | 21 | 305 | 96 | 392 | 3.34e-42 | 166 |
Find 211 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTCCTTGCCGTCTTTC+TGG | 0.066893 | 6_3:-23205605 | None:intergenic |
| TTAGAGCTTCAGATGATTTC+TGG | 0.146587 | 6_3:+23206322 | Msa0945040:CDS |
| TCTCGGGATTTCATGGTAAT+TGG | 0.169806 | 6_3:-23207395 | None:intergenic |
| TAAACCAATAGGAGCAAATT+TGG | 0.190235 | 6_3:-23207465 | None:intergenic |
| TTAGATACCATTGCAATTAA+TGG | 0.192004 | 6_3:+23205930 | Msa0945040:CDS |
| CAATCCTTGGTTGGTCTTCC+TGG | 0.200624 | 6_3:-23206899 | None:intergenic |
| GTTCTTGTTACTCCTGCTTC+TGG | 0.263308 | 6_3:+23203742 | Msa0945040:CDS |
| AATCATTACCTGACATAAAT+AGG | 0.266033 | 6_3:-23206599 | None:intergenic |
| GGGACTCATTTGGTGTTCAT+TGG | 0.269955 | 6_3:+23204639 | Msa0945040:CDS |
| GTTTCTTTCTCATTTGCATT+TGG | 0.276272 | 6_3:+23203546 | Msa0945040:five_prime_UTR |
| TTGATCAATGGTGCATTTCT+TGG | 0.278920 | 6_3:+23203772 | Msa0945040:CDS |
| GGACTCATTTGGTGTTCATT+GGG | 0.286060 | 6_3:+23204640 | Msa0945040:CDS |
| GAGTTTAGTTCCGAATTTAA+TGG | 0.294252 | 6_3:+23207521 | Msa0945040:CDS |
| CGACAGTGGCAGATGATAAA+TGG | 0.300808 | 6_3:+23207210 | Msa0945040:CDS |
| CAACAAATGATTCCGTTATC+AGG | 0.308551 | 6_3:-23206149 | None:intergenic |
| GCACGCAATAACAGGATATT+GGG | 0.318440 | 6_3:+23205806 | Msa0945040:CDS |
| TTCATATTCTCGGGATTTCA+TGG | 0.321029 | 6_3:-23207402 | None:intergenic |
| GCACAGTCACTGACATCATT+AGG | 0.326937 | 6_3:+23207165 | Msa0945040:CDS |
| GGTGCCAAATTTGCTCCTAT+TGG | 0.331580 | 6_3:+23207461 | Msa0945040:CDS |
| TTAATCAAGATGTTTAATTC+AGG | 0.335147 | 6_3:+23207485 | Msa0945040:CDS |
| CCAAACCAGTTCAACATATC+TGG | 0.338607 | 6_3:-23205164 | None:intergenic |
| ATTTACAACTCCATTAAATT+CGG | 0.352036 | 6_3:-23207531 | None:intergenic |
| TCTGGTGGTTCTTTGATCAA+TGG | 0.352616 | 6_3:+23203760 | Msa0945040:CDS |
| CATCTGCCACTGTCGATAAA+TGG | 0.356356 | 6_3:-23207202 | None:intergenic |
| GGCACGCAATAACAGGATAT+TGG | 0.359380 | 6_3:+23205805 | Msa0945040:CDS |
| CAGAATATCCTTGAAACTCT+TGG | 0.359438 | 6_3:+23206050 | Msa0945040:CDS |
| ATATTAAGAGCTAAACTTCC+AGG | 0.366671 | 6_3:+23206881 | Msa0945040:CDS |
| TTTGCTTATTGAAGCACATA+AGG | 0.367083 | 6_3:+23204288 | Msa0945040:CDS |
| TGGAACATGAATGACTATTC+TGG | 0.373902 | 6_3:+23207062 | Msa0945040:CDS |
| CATTTGGTGTTCATTGGGGC+TGG | 0.375289 | 6_3:+23204645 | Msa0945040:CDS |
| TGGTGTTTCTTCTGATCAAA+AGG | 0.383403 | 6_3:+23203792 | Msa0945040:CDS |
| GGAGCAAATTTGGCACCATT+TGG | 0.387548 | 6_3:-23207455 | None:intergenic |
| CTGGATTCTCGTCGTGGATA+AGG | 0.394790 | 6_3:-23207142 | None:intergenic |
| TTCAGTTATGAGGAAGAATC+AGG | 0.395624 | 6_3:+23207644 | Msa0945040:CDS |
| CTAGCATCCGCTGGTATTGA+TGG | 0.397699 | 6_3:+23206011 | Msa0945040:CDS |
| CATTGATATAACTCTTTCTC+CGG | 0.410663 | 6_3:-23207692 | None:intergenic |
| CTTGATGGTGTTAGGGAAGA+AGG | 0.410849 | 6_3:+23203696 | Msa0945040:CDS |
| GCATTTGTTATGACTTCATA+AGG | 0.411544 | 6_3:-23204675 | None:intergenic |
| ATTGCAGTCTCCTCAAGATA+TGG | 0.412765 | 6_3:+23207042 | Msa0945040:intron |
| TTGACTCCAGGAGATGAGAT+AGG | 0.414473 | 6_3:-23205885 | None:intergenic |
| TGTTTCCATTCAACACCATT+GGG | 0.415542 | 6_3:-23205419 | None:intergenic |
| AAGATTGAAGTCGTGGTGTC+CGG | 0.416723 | 6_3:-23206828 | None:intergenic |
| GTGAATTTATGCAGCCAGAT+TGG | 0.418742 | 6_3:+23206409 | Msa0945040:CDS |
| TGAATTTATGCAGCCAGATT+GGG | 0.419847 | 6_3:+23206410 | Msa0945040:CDS |
| CCAGATATGTTGAACTGGTT+TGG | 0.421533 | 6_3:+23205164 | Msa0945040:CDS |
| GCTTTCCCTATCTCATCTCC+TGG | 0.423799 | 6_3:+23205879 | Msa0945040:CDS |
| ATTGGAATAGAAACATCCTT+TGG | 0.425085 | 6_3:-23207377 | None:intergenic |
| GATGGAAACTTGATGGTGTT+AGG | 0.426147 | 6_3:+23203688 | Msa0945040:CDS |
| GATTTCAGGGCTGTTCTTCA+AGG | 0.428389 | 6_3:+23204397 | Msa0945040:CDS |
| GGAATTTGATGGGACTCATT+TGG | 0.432327 | 6_3:+23204629 | Msa0945040:CDS |
| TAATGCTTCATCTGGTTGGT+TGG | 0.433017 | 6_3:-23205910 | None:intergenic |
| AGGGAAGAAGGTTCTGAGTC+AGG | 0.435038 | 6_3:+23203708 | Msa0945040:CDS |
| TTGATGCAGTTCAAAGCGTT+CGG | 0.437922 | 6_3:+23206293 | Msa0945040:intron |
| CCATTTGGTAATTCTTTCAC+AGG | 0.443895 | 6_3:-23207440 | None:intergenic |
| CACAGTCACTGACATCATTA+GGG | 0.443981 | 6_3:+23207166 | Msa0945040:CDS |
| TACCTCTTTCCATCTCTAGC+AGG | 0.444123 | 6_3:-23206935 | None:intergenic |
| AACATCTTGATTAAACCAAT+AGG | 0.450743 | 6_3:-23207476 | None:intergenic |
| AATGACTATTCTGGAGTTGT+TGG | 0.457081 | 6_3:+23207071 | Msa0945040:CDS |
| TATGTGTGGCACGCAATAAC+AGG | 0.457665 | 6_3:+23205798 | Msa0945040:CDS |
| CCGCGTAGGTAGAACTATCT+TGG | 0.458879 | 6_3:-23204351 | None:intergenic |
| ATGACTATTCTGGAGTTGTT+GGG | 0.459794 | 6_3:+23207072 | Msa0945040:CDS |
| CTTAAAACATACCACAAAGA+TGG | 0.460266 | 6_3:-23207256 | None:intergenic |
| AGATGCCAGATATGTTGAAC+TGG | 0.461398 | 6_3:+23205159 | Msa0945040:intron |
| ATGTGAATTGTGTGAGATGC+AGG | 0.463395 | 6_3:-23206354 | None:intergenic |
| GGTGTTAAACCTGGGATTAG+TGG | 0.464175 | 6_3:+23205831 | Msa0945040:CDS |
| GGTTGGTTGGACTTGACTCC+AGG | 0.465627 | 6_3:-23205897 | None:intergenic |
| CACATTCTCTGAAGTGACAT+TGG | 0.467536 | 6_3:-23205213 | None:intergenic |
| TGTTGCTGATGGAAACTTGA+TGG | 0.470783 | 6_3:+23203681 | Msa0945040:CDS |
| ATGTTTCCATTCAACACCAT+TGG | 0.474051 | 6_3:-23205420 | None:intergenic |
| CTTATCCACGACGAGAATCC+AGG | 0.474066 | 6_3:+23207143 | Msa0945040:CDS |
| TTTCAAGAAAAGATGACTGT+AGG | 0.474623 | 6_3:+23203646 | Msa0945040:exon |
| ATGAATCACAGAACAGAGAA+AGG | 0.474977 | 6_3:-23203598 | None:intergenic |
| TCAATGAAAGTGCGCGGGTG+TGG | 0.475072 | 6_3:+23207557 | Msa0945040:CDS |
| CTGAAATCTCCTTCCAAAAG+AGG | 0.477676 | 6_3:-23204382 | None:intergenic |
| TTCAAGAAAAGATGACTGTA+GGG | 0.477683 | 6_3:+23203647 | Msa0945040:exon |
| ATGATGTCAGTGACTGTGCC+TGG | 0.481533 | 6_3:-23207161 | None:intergenic |
| CCATCAAATTCCTCCACATC+AGG | 0.481977 | 6_3:-23204618 | None:intergenic |
| ACAATACAGACGGATTGTAT+AGG | 0.482731 | 6_3:+23206180 | Msa0945040:CDS |
| ACATGAAACATATCCCAATC+TGG | 0.482945 | 6_3:-23206423 | None:intergenic |
| ATGGTATCTAATGCTTCATC+TGG | 0.485206 | 6_3:-23205918 | None:intergenic |
| GGAGCTGGTTGGTGCAAAGT+TGG | 0.487373 | 6_3:+23207110 | Msa0945040:CDS |
| ATCAGAAAATAAGCAATCCT+TGG | 0.487411 | 6_3:-23206912 | None:intergenic |
| CATGCTGCTGCAAGAGCAGT+TGG | 0.488415 | 6_3:+23206569 | Msa0945040:CDS |
| GAGGATGTCCTATTTATGTC+AGG | 0.491039 | 6_3:+23206591 | Msa0945040:CDS |
| AGATTGAAGTCGTGGTGTCC+GGG | 0.497726 | 6_3:-23206827 | None:intergenic |
| CCTGATGTGGAGGAATTTGA+TGG | 0.498094 | 6_3:+23204618 | Msa0945040:CDS |
| TATCTAATGCTTCATCTGGT+TGG | 0.499999 | 6_3:-23205914 | None:intergenic |
| CATTGGAGGCATCGATCTCT+AGG | 0.501698 | 6_3:+23206120 | Msa0945040:CDS |
| AAGTTTGTCATAATTGATGA+TGG | 0.501793 | 6_3:+23205374 | Msa0945040:CDS |
| TCTAGGAACTTTCCTGATAA+CGG | 0.503841 | 6_3:+23206137 | Msa0945040:CDS |
| ATTGAGATTTGTGTTGAAAG+TGG | 0.506532 | 6_3:+23204436 | Msa0945040:CDS |
| ATCAAGATGTTTAATTCAGG+AGG | 0.506929 | 6_3:+23207488 | Msa0945040:CDS |
| ATCCTTGAAACTCTTGGAGC+AGG | 0.507848 | 6_3:+23206056 | Msa0945040:CDS |
| AGAGGTGGAATTCAGTTATG+AGG | 0.508775 | 6_3:+23207634 | Msa0945040:CDS |
| ACTGGTTTGGATGGTGTACA+TGG | 0.510270 | 6_3:+23205177 | Msa0945040:CDS |
| ATGTGATGAATTCCCATGGC+AGG | 0.510914 | 6_3:-23205642 | None:intergenic |
| GTGTGAGATGCAGGGTCTCT+TGG | 0.512827 | 6_3:-23206345 | None:intergenic |
| GCTCTTAATATAGAACCGTC+AGG | 0.513998 | 6_3:-23206869 | None:intergenic |
| ACATACTCAAGCTTGCCAAC+AGG | 0.515300 | 6_3:-23203832 | None:intergenic |
| ATCAAAGAACCACCAGAAGC+AGG | 0.518612 | 6_3:-23203754 | None:intergenic |
| ACTTGCAAGGAAATATCATC+AGG | 0.521049 | 6_3:+23206097 | Msa0945040:CDS |
| TACTGTTGATTCAGAAGAGG+TGG | 0.521451 | 6_3:+23207619 | Msa0945040:CDS |
| TTCCAGAAAGACGGCAAGGA+AGG | 0.521640 | 6_3:+23205603 | Msa0945040:CDS |
| TCAATTATGACAAACTTAGC+AGG | 0.522019 | 6_3:-23205368 | None:intergenic |
| ACCATTGCAATTAATGGACT+CGG | 0.524368 | 6_3:+23205936 | Msa0945040:CDS |
| GTATTCAATTGTCAAGGAGC+TGG | 0.525702 | 6_3:+23207095 | Msa0945040:CDS |
| CTTGTTACTCCTGCTTCTGG+TGG | 0.525865 | 6_3:+23203745 | Msa0945040:CDS |
| CTGATGAATAAGCACCGAAA+AGG | 0.528725 | 6_3:-23207580 | None:intergenic |
| GAAAATAAGCAATCCTTGGT+TGG | 0.534266 | 6_3:-23206908 | None:intergenic |
| TTAAAACATACCACAAAGAT+GGG | 0.534469 | 6_3:-23207255 | None:intergenic |
| TTGTCATCGCGAGAGAAAGA+AGG | 0.535948 | 6_3:+23205029 | Msa0945040:CDS |
| ATGGAAACTTGATGGTGTTA+GGG | 0.536276 | 6_3:+23203689 | Msa0945040:CDS |
| TATTGGGGTGGTGTTAAACC+TGG | 0.537243 | 6_3:+23205822 | Msa0945040:CDS |
| CACTCATATCTAGCATCCGC+TGG | 0.540430 | 6_3:+23206002 | Msa0945040:CDS |
| CAAGGAAGGTCATCGGATAG+AGG | 0.543698 | 6_3:+23205617 | Msa0945040:CDS |
| TGTTCCATGCCACTAATCCC+AGG | 0.544946 | 6_3:-23205840 | None:intergenic |
| GTCCTGCTCCAAGAGTTTCA+AGG | 0.548641 | 6_3:-23206058 | None:intergenic |
| GAAACTCTTGGAGCAGGACA+TGG | 0.552642 | 6_3:+23206062 | Msa0945040:CDS |
| TTGCTTATTGAAGCACATAA+GGG | 0.552730 | 6_3:+23204289 | Msa0945040:CDS |
| GTGGCAGATGATAAATGGAC+AGG | 0.554459 | 6_3:+23207215 | Msa0945040:CDS |
| TCGGTGCTTATTCATCAGCT+CGG | 0.554791 | 6_3:+23207585 | Msa0945040:CDS |
| ATTTCAGGGCTGTTCTTCAA+GGG | 0.556814 | 6_3:+23204398 | Msa0945040:CDS |
| TCGGATAGAGGACCCTGCCA+TGG | 0.557137 | 6_3:+23205629 | Msa0945040:CDS |
| TGGAGCAGGACATGGTGGGA+GGG | 0.557166 | 6_3:+23206070 | Msa0945040:CDS |
| TGGACCCCAATGGTGTTGAA+TGG | 0.557644 | 6_3:+23205414 | Msa0945040:CDS |
| CCTGTGAAAGAATTACCAAA+TGG | 0.557659 | 6_3:+23207440 | Msa0945040:CDS |
| GGTGTTTCTTCTGATCAAAA+GGG | 0.558333 | 6_3:+23203793 | Msa0945040:CDS |
| GACTCATTTGGTGTTCATTG+GGG | 0.558449 | 6_3:+23204641 | Msa0945040:CDS |
| GAAATATCATCAGGCATTGG+AGG | 0.559741 | 6_3:+23206106 | Msa0945040:CDS |
| GAAAAGATGACTGTAGGGGC+AGG | 0.561229 | 6_3:+23203652 | Msa0945040:exon |
| CGGATAGAGGACCCTGCCAT+GGG | 0.562030 | 6_3:+23205630 | Msa0945040:CDS |
| TTGGAGCAGGACATGGTGGG+AGG | 0.562696 | 6_3:+23206069 | Msa0945040:CDS |
| GTGGTGGATGACTCAGAGAA+TGG | 0.563083 | 6_3:+23204228 | Msa0945040:CDS |
| TGAATCACAGAACAGAGAAA+GGG | 0.563091 | 6_3:-23203597 | None:intergenic |
| ACTTCAGAGAATGTGAAAGA+AGG | 0.564462 | 6_3:+23205221 | Msa0945040:CDS |
| GCCGAGTCCATTAATTGCAA+TGG | 0.564685 | 6_3:-23205937 | None:intergenic |
| GCAGGAATATCTGTTGCTGA+TGG | 0.567325 | 6_3:+23203670 | Msa0945040:CDS |
| AAGAAGCTTGTACTTCCTGA+CGG | 0.570895 | 6_3:+23206854 | Msa0945040:CDS |
| GTTGGGGTATTCAATTGTCA+AGG | 0.578349 | 6_3:+23207089 | Msa0945040:CDS |
| GGAACAAAGAGCATTGCTGA+AGG | 0.578391 | 6_3:+23203567 | Msa0945040:five_prime_UTR |
| TGACTCCAGGAGATGAGATA+GGG | 0.578809 | 6_3:-23205884 | None:intergenic |
| TTTATAGGCATGTGTATGTG+TGG | 0.579591 | 6_3:+23205784 | Msa0945040:intron |
| CATTCATGTTCCATATCTTG+AGG | 0.580578 | 6_3:-23207052 | None:intergenic |
| GGAACATTATGAGTCAAAGA+TGG | 0.580896 | 6_3:+23205857 | Msa0945040:CDS |
| TCAAGATGTTTAATTCAGGA+GGG | 0.581133 | 6_3:+23207489 | Msa0945040:CDS |
| ATTTCAGAGTCTTCATCCGA+TGG | 0.583061 | 6_3:+23206538 | Msa0945040:intron |
| ATATGTTGAACTGGTTTGGA+TGG | 0.583851 | 6_3:+23205168 | Msa0945040:CDS |
| CGGAGAAAGAGTTATATCAA+TGG | 0.585923 | 6_3:+23207693 | Msa0945040:CDS |
| CAAGATGTTTAATTCAGGAG+GGG | 0.587768 | 6_3:+23207490 | Msa0945040:CDS |
| TTGTCATAATTGATGATGGA+TGG | 0.588951 | 6_3:+23205378 | Msa0945040:CDS |
| GACTATAGATTTGAGTGTGC+CGG | 0.590182 | 6_3:+23207673 | Msa0945040:CDS |
| GCAGCATGATATTCAGCCAT+CGG | 0.591613 | 6_3:-23206554 | None:intergenic |
| AGTCGCAGAGTCTTTCCTGT+TGG | 0.594965 | 6_3:+23203817 | Msa0945040:CDS |
| TTATGAGGAAGAATCAGGAT+TGG | 0.596231 | 6_3:+23207649 | Msa0945040:CDS |
| CATAAGGGTCGTGATATTGA+CGG | 0.598066 | 6_3:+23204304 | Msa0945040:CDS |
| TCTTCAAAAGATTGAAGTCG+TGG | 0.598479 | 6_3:-23206835 | None:intergenic |
| ATGTTTCAATGAAAGTGCGC+GGG | 0.600368 | 6_3:+23207552 | Msa0945040:CDS |
| GATTACTGTTGATTCAGAAG+AGG | 0.601348 | 6_3:+23207616 | Msa0945040:CDS |
| GAACAAAGAGCATTGCTGAA+GGG | 0.603346 | 6_3:+23203568 | Msa0945040:five_prime_UTR |
| TCAATTGTCAAGGAGCTGGT+TGG | 0.603577 | 6_3:+23207099 | Msa0945040:CDS |
| AATCACAAATTCCAGAAAGA+CGG | 0.606328 | 6_3:+23205594 | Msa0945040:CDS |
| TCACACAATTCACATTGCAT+CGG | 0.606593 | 6_3:+23206362 | Msa0945040:CDS |
| TAAACCTGGGATTAGTGGCA+TGG | 0.606597 | 6_3:+23205836 | Msa0945040:CDS |
| TGACTATTCTGGAGTTGTTG+GGG | 0.608376 | 6_3:+23207073 | Msa0945040:CDS |
| CTGTGCCTGGATTCTCGTCG+TGG | 0.608941 | 6_3:-23207148 | None:intergenic |
| ATCCTGCTAGAGATGGAAAG+AGG | 0.609009 | 6_3:+23206933 | Msa0945040:CDS |
| GAATCAACAGTAATCAACTT+CGG | 0.612554 | 6_3:-23207608 | None:intergenic |
| ATTGGGGTGGTGTTAAACCT+GGG | 0.617867 | 6_3:+23205823 | Msa0945040:CDS |
| TGCATGAGTCACAATACAGA+CGG | 0.618170 | 6_3:+23206170 | Msa0945040:CDS |
| CATTTGGTAATTCTTTCACA+GGG | 0.619704 | 6_3:-23207439 | None:intergenic |
| AATTCAAAAGGTTTCAACAG+TGG | 0.620498 | 6_3:-23203624 | None:intergenic |
| ACTCTTGGAGCAGGACATGG+TGG | 0.623127 | 6_3:+23206065 | Msa0945040:CDS |
| GCTGCTGCAAGAGCAGTTGG+AGG | 0.623143 | 6_3:+23206572 | Msa0945040:CDS |
| TGGTGGATGACTCAGAGAAT+GGG | 0.624213 | 6_3:+23204229 | Msa0945040:CDS |
| TCTGTTAGCATGGACCCCAA+TGG | 0.628808 | 6_3:+23205404 | Msa0945040:CDS |
| TGGATGGCAATCTGTTAGCA+TGG | 0.629189 | 6_3:+23205394 | Msa0945040:CDS |
| AGGGTCGTGATATTGACGGA+GGG | 0.630237 | 6_3:+23204308 | Msa0945040:CDS |
| AAGACGGCAAGGAAGGTCAT+CGG | 0.630476 | 6_3:+23205610 | Msa0945040:CDS |
| TGTGATGAATTCCCATGGCA+GGG | 0.631193 | 6_3:-23205641 | None:intergenic |
| CTCTTGGAGCAGGACATGGT+GGG | 0.631869 | 6_3:+23206066 | Msa0945040:CDS |
| AAGGAAATATCATCAGGCAT+TGG | 0.632296 | 6_3:+23206103 | Msa0945040:CDS |
| GTGGGAGGGTGAAACTTGCA+AGG | 0.634046 | 6_3:+23206084 | Msa0945040:CDS |
| GTTTCCATTCAACACCATTG+GGG | 0.635207 | 6_3:-23205418 | None:intergenic |
| ATGTTGTGTAGCGACAAGCC+CGG | 0.639558 | 6_3:+23206809 | Msa0945040:intron |
| ACAAAGATGGGAAAATATGA+CGG | 0.641050 | 6_3:-23207243 | None:intergenic |
| TCAAGAAAAGATGACTGTAG+GGG | 0.642324 | 6_3:+23203648 | Msa0945040:exon |
| TGAAGTAGTCTATCTTCCAA+AGG | 0.643888 | 6_3:+23207361 | Msa0945040:CDS |
| CAGCGGATGCTAGATATGAG+TGG | 0.644150 | 6_3:-23206001 | None:intergenic |
| CTGATGTGGAGGAATTTGAT+GGG | 0.644921 | 6_3:+23204619 | Msa0945040:CDS |
| ATGTGAAAGAAGGATTACAA+AGG | 0.646563 | 6_3:+23205231 | Msa0945040:CDS |
| AAACTTTCTCAGGATTCACA+AGG | 0.647279 | 6_3:-23205959 | None:intergenic |
| ATTGACGGAGGGGTTGACAG+TGG | 0.659836 | 6_3:+23204319 | Msa0945040:CDS |
| AAATGAGAAAGAAACAGAGA+AGG | 0.660930 | 6_3:-23203538 | None:intergenic |
| ACTCAGAGAATGGGTAACTG+TGG | 0.666426 | 6_3:+23204238 | Msa0945040:CDS |
| GATTGTAGGATGTCCTGATG+TGG | 0.668084 | 6_3:+23204605 | Msa0945040:intron |
| CACGCAATAACAGGATATTG+GGG | 0.669516 | 6_3:+23205807 | Msa0945040:CDS |
| CAAATTCCAGAAAGACGGCA+AGG | 0.669689 | 6_3:+23205599 | Msa0945040:CDS |
| AAGAGGTAACAAAACCGCGT+AGG | 0.674435 | 6_3:-23204365 | None:intergenic |
| GGGTCGTGATATTGACGGAG+GGG | 0.674757 | 6_3:+23204309 | Msa0945040:CDS |
| ACTTCCAGGAAGACCAACCA+AGG | 0.682213 | 6_3:+23206895 | Msa0945040:CDS |
| CCAAGATAGTTCTACCTACG+CGG | 0.682973 | 6_3:+23204351 | Msa0945040:CDS |
| CTGGTTTGGATGGTGTACAT+GGG | 0.686671 | 6_3:+23205178 | Msa0945040:CDS |
| TGTAGGATGTCCTGATGTGG+AGG | 0.686980 | 6_3:+23204608 | Msa0945040:intron |
| AAGGGTCGTGATATTGACGG+AGG | 0.687446 | 6_3:+23204307 | Msa0945040:CDS |
| AATGTTTCAATGAAAGTGCG+CGG | 0.689249 | 6_3:+23207551 | Msa0945040:CDS |
| TGTGAATTGTGTGAGATGCA+GGG | 0.690378 | 6_3:-23206353 | None:intergenic |
| TATCGACCATTTATCGACAG+TGG | 0.693571 | 6_3:+23207196 | Msa0945040:CDS |
| CTGGCTGCATAAATTCACCA+AGG | 0.700322 | 6_3:-23206404 | None:intergenic |
| GCAATAACAGGATATTGGGG+TGG | 0.700706 | 6_3:+23205810 | Msa0945040:CDS |
| GGTAATGTGATGAATTCCCA+TGG | 0.713393 | 6_3:-23205646 | None:intergenic |
| TTTGACACCATCAATACCAG+CGG | 0.721207 | 6_3:-23206018 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTATGTTTTTGTTTT+AGG | + | chr6_3:23204170-23204189 | Msa0945040:intron | 10.0% |
| !!! | TTTATTATGTTTTTGTTTTA+GGG | + | chr6_3:23204171-23204190 | Msa0945040:intron | 10.0% |
| !!! | TTTTTAAAGTAAAAATTTGA+TGG | + | chr6_3:23205073-23205092 | Msa0945040:intron | 10.0% |
| !! | TATTAACAAAAAAAGATTTA+AGG | - | chr6_3:23206738-23206757 | None:intergenic | 10.0% |
| !!! | TTTATAAATCAAATACTTTT+AGG | + | chr6_3:23207730-23207749 | Msa0945040:exon | 10.0% |
| !!! | TTATTATGTTTTTGTTTTAG+GGG | + | chr6_3:23204172-23204191 | Msa0945040:intron | 15.0% |
| !! | TTATGTAATTGTTAACAAAT+TGG | + | chr6_3:23204808-23204827 | Msa0945040:intron | 15.0% |
| !!! | TCTTTTCTTGAAAATTCAAA+AGG | - | chr6_3:23203639-23203658 | None:intergenic | 20.0% |
| !! | ATAAACATCAAAAACCAAAA+GGG | - | chr6_3:23204103-23204122 | None:intergenic | 20.0% |
| !! | AATAAACATCAAAAACCAAA+AGG | - | chr6_3:23204104-23204123 | None:intergenic | 20.0% |
| !!! | TATTATGTTTTTGTTTTAGG+GGG | + | chr6_3:23204173-23204192 | Msa0945040:intron | 20.0% |
| !!! | TTTTTTCAATTACTAGGATT+AGG | + | chr6_3:23204839-23204858 | Msa0945040:intron | 20.0% |
| !! | GTAAAACACAAAAATATTAG+AGG | - | chr6_3:23205124-23205143 | None:intergenic | 20.0% |
| !! | TTATTTATTTCCACTAAAAG+TGG | + | chr6_3:23205256-23205275 | Msa0945040:intron | 20.0% |
| !! | TATATTTGACAATGAAAGTT+GGG | - | chr6_3:23205475-23205494 | None:intergenic | 20.0% |
| !! | ATATATTTGACAATGAAAGT+TGG | - | chr6_3:23205476-23205495 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTTTGATTTCAT+TGG | - | chr6_3:23205670-23205689 | None:intergenic | 20.0% |
| !!! | TTATTGAATAAATCTAGAGT+AGG | - | chr6_3:23206247-23206266 | None:intergenic | 20.0% |
| !! | TCTAGATTTATTCAATAACA+AGG | + | chr6_3:23206249-23206268 | Msa0945040:intron | 20.0% |
| !! | TCATGTAAGTTGTTAAATAT+AGG | + | chr6_3:23206440-23206459 | Msa0945040:intron | 20.0% |
| !! | CTATGAACCAAAATATATTT+AGG | - | chr6_3:23206470-23206489 | None:intergenic | 20.0% |
| !! | TTAATCAAGATGTTTAATTC+AGG | + | chr6_3:23207485-23207504 | Msa0945040:CDS | 20.0% |
| !! | ATTTACAACTCCATTAAATT+CGG | - | chr6_3:23207534-23207553 | None:intergenic | 20.0% |
| !!! | TAAATCAAATACTTTTAGGT+TGG | + | chr6_3:23207734-23207753 | Msa0945040:exon | 20.0% |
| ! | TCACACAAAAAACATACAAA+AGG | - | chr6_3:23203970-23203989 | None:intergenic | 25.0% |
| ! | CTATCATCATGATAAAAACA+TGG | + | chr6_3:23204011-23204030 | Msa0945040:intron | 25.0% |
| ! | TAAACATCAAAAACCAAAAG+GGG | - | chr6_3:23204102-23204121 | None:intergenic | 25.0% |
| ! | TTTGCAAGTGTTAATATTGA+AGG | + | chr6_3:23204127-23204146 | Msa0945040:intron | 25.0% |
| !!! | CGTTTTTTGTGTTTGTAAAT+CGG | + | chr6_3:23204484-23204503 | Msa0945040:intron | 25.0% |
| !!! | GTTTTTTGTGTTTGTAAATC+GGG | + | chr6_3:23204485-23204504 | Msa0945040:intron | 25.0% |
| !!! | TTAGTTTTTACAGTTATGTG+TGG | - | chr6_3:23204517-23204536 | None:intergenic | 25.0% |
| !!! | TCTGAGTTTTTTCAATTACT+AGG | + | chr6_3:23204833-23204852 | Msa0945040:intron | 25.0% |
| !!! | TTTGAACTTTTTCTTTGTTC+AGG | + | chr6_3:23204980-23204999 | Msa0945040:intron | 25.0% |
| !! | TTACGTTATTTACAGTTTTG+AGG | + | chr6_3:23205334-23205353 | Msa0945040:intron | 25.0% |
| ! | AAGTTTGTCATAATTGATGA+TGG | + | chr6_3:23205374-23205393 | Msa0945040:CDS | 25.0% |
| !!! | TTTTCGTCGTTTTTGTTTAT+AGG | + | chr6_3:23205769-23205788 | Msa0945040:intron | 25.0% |
| ! | TTAGATACCATTGCAATTAA+TGG | + | chr6_3:23205930-23205949 | Msa0945040:CDS | 25.0% |
| ! | TAAAAGTGAAAAACTTTCTC+AGG | - | chr6_3:23205972-23205991 | None:intergenic | 25.0% |
| !! | AGGAGATCCTAAATATATTT+TGG | + | chr6_3:23206460-23206479 | Msa0945040:intron | 25.0% |
| ! | AATCATTACCTGACATAAAT+AGG | - | chr6_3:23206602-23206621 | None:intergenic | 25.0% |
| ! | AGTTAGAAGAGAATAACTTA+TGG | - | chr6_3:23206630-23206649 | None:intergenic | 25.0% |
| !!! | TATGTAATTGTTTGTTGTCT+TGG | + | chr6_3:23206660-23206679 | Msa0945040:intron | 25.0% |
| ! | TTAAAACATACCACAAAGAT+GGG | - | chr6_3:23207258-23207277 | None:intergenic | 25.0% |
| ! | TCGTAAAAACTTCATATTCT+CGG | - | chr6_3:23207415-23207434 | None:intergenic | 25.0% |
| ! | AACATCTTGATTAAACCAAT+AGG | - | chr6_3:23207479-23207498 | None:intergenic | 25.0% |
| !!! | AAATACTTTTAGGTTGGTTA+TGG | + | chr6_3:23207740-23207759 | Msa0945040:three_prime_UTR | 25.0% |
| GTTTCTTTCTCATTTGCATT+TGG | + | chr6_3:23203546-23203565 | Msa0945040:five_prime_UTR | 30.0% | |
| AATTCAAAAGGTTTCAACAG+TGG | - | chr6_3:23203627-23203646 | None:intergenic | 30.0% | |
| TTTCAAGAAAAGATGACTGT+AGG | + | chr6_3:23203646-23203665 | Msa0945040:exon | 30.0% | |
| TTCAAGAAAAGATGACTGTA+GGG | + | chr6_3:23203647-23203666 | Msa0945040:exon | 30.0% | |
| CTGTGTTTGTTTAAGGATTA+AGG | + | chr6_3:23204073-23204092 | Msa0945040:intron | 30.0% | |
| TTTGCTTATTGAAGCACATA+AGG | + | chr6_3:23204288-23204307 | Msa0945040:CDS | 30.0% | |
| TTGCTTATTGAAGCACATAA+GGG | + | chr6_3:23204289-23204308 | Msa0945040:CDS | 30.0% | |
| ATTGAGATTTGTGTTGAAAG+TGG | + | chr6_3:23204436-23204455 | Msa0945040:CDS | 30.0% | |
| ! | TATGCATTGTGAATTTTTGC+TGG | + | chr6_3:23204576-23204595 | Msa0945040:intron | 30.0% |
| ! | ATGCATTGTGAATTTTTGCT+GGG | + | chr6_3:23204577-23204596 | Msa0945040:intron | 30.0% |
| !! | GCATTTGTTATGACTTCATA+AGG | - | chr6_3:23204678-23204697 | None:intergenic | 30.0% |
| AAACAAGAACAAAGAAGAAC+TGG | - | chr6_3:23204743-23204762 | None:intergenic | 30.0% | |
| TGTTCCATTAGTTCAGTATT+AGG | + | chr6_3:23204902-23204921 | Msa0945040:intron | 30.0% | |
| AAGTCCTAATACTGAACTAA+TGG | - | chr6_3:23204909-23204928 | None:intergenic | 30.0% | |
| AAAGTTCATCACTGCAAATT+AGG | - | chr6_3:23204960-23204979 | None:intergenic | 30.0% | |
| GGCATCTGAATAATACAAAT+AGG | - | chr6_3:23205146-23205165 | None:intergenic | 30.0% | |
| ATGTGAAAGAAGGATTACAA+AGG | + | chr6_3:23205231-23205250 | Msa0945040:CDS | 30.0% | |
| !!! | GTTATTTACAGTTTTGAGGA+AGG | + | chr6_3:23205338-23205357 | Msa0945040:intron | 30.0% |
| TCAATTATGACAAACTTAGC+AGG | - | chr6_3:23205371-23205390 | None:intergenic | 30.0% | |
| !! | TTGTCATAATTGATGATGGA+TGG | + | chr6_3:23205378-23205397 | Msa0945040:CDS | 30.0% |
| TTCGTCATTGTAAAAATGCA+TGG | - | chr6_3:23205506-23205525 | None:intergenic | 30.0% | |
| AATCACAAATTCCAGAAAGA+CGG | + | chr6_3:23205594-23205613 | Msa0945040:CDS | 30.0% | |
| AAACGACGAAAAATTTGCAA+CGG | - | chr6_3:23205761-23205780 | None:intergenic | 30.0% | |
| ! | GCTTACAATACTATTTTCCT+TGG | + | chr6_3:23206387-23206406 | Msa0945040:CDS | 30.0% |
| CACAACATTACAAAATCAGA+AGG | - | chr6_3:23206797-23206816 | None:intergenic | 30.0% | |
| ATATTAAGAGCTAAACTTCC+AGG | + | chr6_3:23206881-23206900 | Msa0945040:CDS | 30.0% | |
| ATCAGAAAATAAGCAATCCT+TGG | - | chr6_3:23206915-23206934 | None:intergenic | 30.0% | |
| CTTGTCAAGTAAGTAAAGTT+AGG | - | chr6_3:23206984-23207003 | None:intergenic | 30.0% | |
| ACAAAGATGGGAAAATATGA+CGG | - | chr6_3:23207246-23207265 | None:intergenic | 30.0% | |
| CTTAAAACATACCACAAAGA+TGG | - | chr6_3:23207259-23207278 | None:intergenic | 30.0% | |
| ! | CATCTTTGTGGTATGTTTTA+AGG | + | chr6_3:23207257-23207276 | Msa0945040:intron | 30.0% |
| TTTACATCACACTCCTAAAA+AGG | + | chr6_3:23207281-23207300 | Msa0945040:intron | 30.0% | |
| CAATTATACACAAGAAAAGC+TGG | - | chr6_3:23207312-23207331 | None:intergenic | 30.0% | |
| TGTTTATGATGTTTGTTTGC+AGG | + | chr6_3:23207338-23207357 | Msa0945040:intron | 30.0% | |
| ATTGGAATAGAAACATCCTT+TGG | - | chr6_3:23207380-23207399 | None:intergenic | 30.0% | |
| CGTAAAAACTTCATATTCTC+GGG | - | chr6_3:23207414-23207433 | None:intergenic | 30.0% | |
| ! | CATTTGGTAATTCTTTCACA+GGG | - | chr6_3:23207442-23207461 | None:intergenic | 30.0% |
| TAAACCAATAGGAGCAAATT+TGG | - | chr6_3:23207468-23207487 | None:intergenic | 30.0% | |
| ATCAAGATGTTTAATTCAGG+AGG | + | chr6_3:23207488-23207507 | Msa0945040:CDS | 30.0% | |
| TCAAGATGTTTAATTCAGGA+GGG | + | chr6_3:23207489-23207508 | Msa0945040:CDS | 30.0% | |
| ! | GAGTTTAGTTCCGAATTTAA+TGG | + | chr6_3:23207521-23207540 | Msa0945040:CDS | 30.0% |
| GAATCAACAGTAATCAACTT+CGG | - | chr6_3:23207611-23207630 | None:intergenic | 30.0% | |
| CATTGATATAACTCTTTCTC+CGG | - | chr6_3:23207695-23207714 | None:intergenic | 30.0% | |
| TGAATCACAGAACAGAGAAA+GGG | - | chr6_3:23203600-23203619 | None:intergenic | 35.0% | |
| ATGAATCACAGAACAGAGAA+AGG | - | chr6_3:23203601-23203620 | None:intergenic | 35.0% | |
| TCAAGAAAAGATGACTGTAG+GGG | + | chr6_3:23203648-23203667 | Msa0945040:exon | 35.0% | |
| !! | ATGGAAACTTGATGGTGTTA+GGG | + | chr6_3:23203689-23203708 | Msa0945040:CDS | 35.0% |
| TTGATCAATGGTGCATTTCT+TGG | + | chr6_3:23203772-23203791 | Msa0945040:CDS | 35.0% | |
| TGGTGTTTCTTCTGATCAAA+AGG | + | chr6_3:23203792-23203811 | Msa0945040:CDS | 35.0% | |
| GGTGTTTCTTCTGATCAAAA+GGG | + | chr6_3:23203793-23203812 | Msa0945040:CDS | 35.0% | |
| GTTGACACTGTGTTTGTTTA+AGG | + | chr6_3:23204066-23204085 | Msa0945040:intron | 35.0% | |
| AGCAAAAACTGTGTCTCAAA+GGG | - | chr6_3:23204274-23204293 | None:intergenic | 35.0% | |
| AAGCAAAAACTGTGTCTCAA+AGG | - | chr6_3:23204275-23204294 | None:intergenic | 35.0% | |
| !! | GTTTTGTTACCTCTTTTGGA+AGG | + | chr6_3:23204373-23204392 | Msa0945040:CDS | 35.0% |
| !! | TCTTTTGGAAGGAGATTTCA+GGG | + | chr6_3:23204384-23204403 | Msa0945040:CDS | 35.0% |
| ! | GTTTTTACAGTTATGTGTGG+AGG | - | chr6_3:23204514-23204533 | None:intergenic | 35.0% |
| AGAAGAACTGGAAAGTGAAA+AGG | - | chr6_3:23204731-23204750 | None:intergenic | 35.0% | |
| TGCGAAATTTACATCACTGA+TGG | + | chr6_3:23204771-23204790 | Msa0945040:intron | 35.0% | |
| ATGAACTTTAAGCTGCAACA+AGG | - | chr6_3:23205099-23205118 | None:intergenic | 35.0% | |
| !! | ATATGTTGAACTGGTTTGGA+TGG | + | chr6_3:23205168-23205187 | Msa0945040:CDS | 35.0% |
| ACTTCAGAGAATGTGAAAGA+AGG | + | chr6_3:23205221-23205240 | Msa0945040:CDS | 35.0% | |
| !! | GTAACTTAGACCACTTTTAG+TGG | - | chr6_3:23205269-23205288 | None:intergenic | 35.0% |
| !!! | ATTTACAGTTTTGAGGAAGG+TGG | + | chr6_3:23205341-23205360 | Msa0945040:intron | 35.0% |
| TGTTTCCATTCAACACCATT+GGG | - | chr6_3:23205422-23205441 | None:intergenic | 35.0% | |
| ATGTTTCCATTCAACACCAT+TGG | - | chr6_3:23205423-23205442 | None:intergenic | 35.0% | |
| TTTATAGGCATGTGTATGTG+TGG | + | chr6_3:23205784-23205803 | Msa0945040:intron | 35.0% | |
| GGAACATTATGAGTCAAAGA+TGG | + | chr6_3:23205857-23205876 | Msa0945040:CDS | 35.0% | |
| TATCTAATGCTTCATCTGGT+TGG | - | chr6_3:23205917-23205936 | None:intergenic | 35.0% | |
| ATGGTATCTAATGCTTCATC+TGG | - | chr6_3:23205921-23205940 | None:intergenic | 35.0% | |
| !! | ACCATTGCAATTAATGGACT+CGG | + | chr6_3:23205936-23205955 | Msa0945040:CDS | 35.0% |
| AAACTTTCTCAGGATTCACA+AGG | - | chr6_3:23205962-23205981 | None:intergenic | 35.0% | |
| CAGAATATCCTTGAAACTCT+TGG | + | chr6_3:23206050-23206069 | Msa0945040:CDS | 35.0% | |
| ACTTGCAAGGAAATATCATC+AGG | + | chr6_3:23206097-23206116 | Msa0945040:CDS | 35.0% | |
| AAGGAAATATCATCAGGCAT+TGG | + | chr6_3:23206103-23206122 | Msa0945040:CDS | 35.0% | |
| TCTAGGAACTTTCCTGATAA+CGG | + | chr6_3:23206137-23206156 | Msa0945040:CDS | 35.0% | |
| CAACAAATGATTCCGTTATC+AGG | - | chr6_3:23206152-23206171 | None:intergenic | 35.0% | |
| !! | ACAATACAGACGGATTGTAT+AGG | + | chr6_3:23206180-23206199 | Msa0945040:CDS | 35.0% |
| TTAGAGCTTCAGATGATTTC+TGG | + | chr6_3:23206322-23206341 | Msa0945040:CDS | 35.0% | |
| TCACACAATTCACATTGCAT+CGG | + | chr6_3:23206362-23206381 | Msa0945040:CDS | 35.0% | |
| TGAATTTATGCAGCCAGATT+GGG | + | chr6_3:23206410-23206429 | Msa0945040:CDS | 35.0% | |
| ACATGAAACATATCCCAATC+TGG | - | chr6_3:23206426-23206445 | None:intergenic | 35.0% | |
| TGGTTCATAGAAAATGTGCT+AGG | + | chr6_3:23206480-23206499 | Msa0945040:intron | 35.0% | |
| AGAAAATGTGCTAGGATTTC+AGG | + | chr6_3:23206488-23206507 | Msa0945040:intron | 35.0% | |
| TCTTCAAAAGATTGAAGTCG+TGG | - | chr6_3:23206838-23206857 | None:intergenic | 35.0% | |
| GAAAATAAGCAATCCTTGGT+TGG | - | chr6_3:23206911-23206930 | None:intergenic | 35.0% | |
| CATTCATGTTCCATATCTTG+AGG | - | chr6_3:23207055-23207074 | None:intergenic | 35.0% | |
| TGGAACATGAATGACTATTC+TGG | + | chr6_3:23207062-23207081 | Msa0945040:CDS | 35.0% | |
| !! | AATGACTATTCTGGAGTTGT+TGG | + | chr6_3:23207071-23207090 | Msa0945040:CDS | 35.0% |
| !! | ATGACTATTCTGGAGTTGTT+GGG | + | chr6_3:23207072-23207091 | Msa0945040:CDS | 35.0% |
| ! | GTCATATTTTCCCATCTTTG+TGG | + | chr6_3:23207245-23207264 | Msa0945040:CDS | 35.0% |
| ! | AAAGCTGGTGTAACCTTTTT+AGG | - | chr6_3:23207297-23207316 | None:intergenic | 35.0% |
| TGAAGTAGTCTATCTTCCAA+AGG | + | chr6_3:23207361-23207380 | Msa0945040:CDS | 35.0% | |
| TTCATATTCTCGGGATTTCA+TGG | - | chr6_3:23207405-23207424 | None:intergenic | 35.0% | |
| ! | CCATTTGGTAATTCTTTCAC+AGG | - | chr6_3:23207443-23207462 | None:intergenic | 35.0% |
| CCTGTGAAAGAATTACCAAA+TGG | + | chr6_3:23207440-23207459 | Msa0945040:CDS | 35.0% | |
| CAAGATGTTTAATTCAGGAG+GGG | + | chr6_3:23207490-23207509 | Msa0945040:CDS | 35.0% | |
| ! | AATGTTTCAATGAAAGTGCG+CGG | + | chr6_3:23207551-23207570 | Msa0945040:CDS | 35.0% |
| !! | GATTACTGTTGATTCAGAAG+AGG | + | chr6_3:23207616-23207635 | Msa0945040:CDS | 35.0% |
| TTCAGTTATGAGGAAGAATC+AGG | + | chr6_3:23207644-23207663 | Msa0945040:CDS | 35.0% | |
| TTATGAGGAAGAATCAGGAT+TGG | + | chr6_3:23207649-23207668 | Msa0945040:CDS | 35.0% | |
| CGGAGAAAGAGTTATATCAA+TGG | + | chr6_3:23207693-23207712 | Msa0945040:CDS | 35.0% | |
| !! | GAACAAAGAGCATTGCTGAA+GGG | + | chr6_3:23203568-23203587 | Msa0945040:five_prime_UTR | 40.0% |
| TGTTGCTGATGGAAACTTGA+TGG | + | chr6_3:23203681-23203700 | Msa0945040:CDS | 40.0% | |
| !! | GATGGAAACTTGATGGTGTT+AGG | + | chr6_3:23203688-23203707 | Msa0945040:CDS | 40.0% |
| TCTGGTGGTTCTTTGATCAA+TGG | + | chr6_3:23203760-23203779 | Msa0945040:CDS | 40.0% | |
| ! | GTCTTTTCCGCTTCAAAATG+TGG | + | chr6_3:23204209-23204228 | Msa0945040:CDS | 40.0% |
| ! | TTTTCCGCTTCAAAATGTGG+TGG | + | chr6_3:23204212-23204231 | Msa0945040:CDS | 40.0% |
| !! | TCATCCACCACATTTTGAAG+CGG | - | chr6_3:23204219-23204238 | None:intergenic | 40.0% |
| GCAAAAACTGTGTCTCAAAG+GGG | - | chr6_3:23204273-23204292 | None:intergenic | 40.0% | |
| CATAAGGGTCGTGATATTGA+CGG | + | chr6_3:23204304-23204323 | Msa0945040:CDS | 40.0% | |
| CTGAAATCTCCTTCCAAAAG+AGG | - | chr6_3:23204385-23204404 | None:intergenic | 40.0% | |
| !! | CTCTTTTGGAAGGAGATTTC+AGG | + | chr6_3:23204383-23204402 | Msa0945040:CDS | 40.0% |
| ATTTCAGGGCTGTTCTTCAA+GGG | + | chr6_3:23204398-23204417 | Msa0945040:CDS | 40.0% | |
| CTGATGTGGAGGAATTTGAT+GGG | + | chr6_3:23204619-23204638 | Msa0945040:CDS | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | + | chr6_3:23204629-23204648 | Msa0945040:CDS | 40.0% | |
| !! | GGACTCATTTGGTGTTCATT+GGG | + | chr6_3:23204640-23204659 | Msa0945040:CDS | 40.0% |
| !! | GACTCATTTGGTGTTCATTG+GGG | + | chr6_3:23204641-23204660 | Msa0945040:CDS | 40.0% |
| AGATGCCAGATATGTTGAAC+TGG | + | chr6_3:23205159-23205178 | Msa0945040:intron | 40.0% | |
| CCAAACCAGTTCAACATATC+TGG | - | chr6_3:23205167-23205186 | None:intergenic | 40.0% | |
| CCAGATATGTTGAACTGGTT+TGG | + | chr6_3:23205164-23205183 | Msa0945040:CDS | 40.0% | |
| !! | CACATTCTCTGAAGTGACAT+TGG | - | chr6_3:23205216-23205235 | None:intergenic | 40.0% |
| GTTTCCATTCAACACCATTG+GGG | - | chr6_3:23205421-23205440 | None:intergenic | 40.0% | |
| GGTAATGTGATGAATTCCCA+TGG | - | chr6_3:23205649-23205668 | None:intergenic | 40.0% | |
| GCACGCAATAACAGGATATT+GGG | + | chr6_3:23205806-23205825 | Msa0945040:CDS | 40.0% | |
| CACGCAATAACAGGATATTG+GGG | + | chr6_3:23205807-23205826 | Msa0945040:CDS | 40.0% | |
| TAATGCTTCATCTGGTTGGT+TGG | - | chr6_3:23205913-23205932 | None:intergenic | 40.0% | |
| TTTGACACCATCAATACCAG+CGG | - | chr6_3:23206021-23206040 | None:intergenic | 40.0% | |
| !! | GAAATATCATCAGGCATTGG+AGG | + | chr6_3:23206106-23206125 | Msa0945040:CDS | 40.0% |
| TGCATGAGTCACAATACAGA+CGG | + | chr6_3:23206170-23206189 | Msa0945040:CDS | 40.0% | |
| !! | TACAGACGGATTGTATAGGT+AGG | + | chr6_3:23206184-23206203 | Msa0945040:intron | 40.0% |
| ! | TTGATGCAGTTCAAAGCGTT+CGG | + | chr6_3:23206293-23206312 | Msa0945040:intron | 40.0% |
| TGTGAATTGTGTGAGATGCA+GGG | - | chr6_3:23206356-23206375 | None:intergenic | 40.0% | |
| ATGTGAATTGTGTGAGATGC+AGG | - | chr6_3:23206357-23206376 | None:intergenic | 40.0% | |
| GTGAATTTATGCAGCCAGAT+TGG | + | chr6_3:23206409-23206428 | Msa0945040:CDS | 40.0% | |
| ATTTCAGAGTCTTCATCCGA+TGG | + | chr6_3:23206538-23206557 | Msa0945040:intron | 40.0% | |
| GAGGATGTCCTATTTATGTC+AGG | + | chr6_3:23206591-23206610 | Msa0945040:CDS | 40.0% | |
| AAGAAGCTTGTACTTCCTGA+CGG | + | chr6_3:23206854-23206873 | Msa0945040:CDS | 40.0% | |
| GCTCTTAATATAGAACCGTC+AGG | - | chr6_3:23206872-23206891 | None:intergenic | 40.0% | |
| ! | TTTTCTGATCCTGCTAGAGA+TGG | + | chr6_3:23206926-23206945 | Msa0945040:CDS | 40.0% |
| ! | ATCAGCTTGTTCTTTGCTCA+TGG | + | chr6_3:23207011-23207030 | Msa0945040:intron | 40.0% |
| ATTGCAGTCTCCTCAAGATA+TGG | + | chr6_3:23207042-23207061 | Msa0945040:intron | 40.0% | |
| !! | TGACTATTCTGGAGTTGTTG+GGG | + | chr6_3:23207073-23207092 | Msa0945040:CDS | 40.0% |
| ! | GTTGGGGTATTCAATTGTCA+AGG | + | chr6_3:23207089-23207108 | Msa0945040:CDS | 40.0% |
| GTATTCAATTGTCAAGGAGC+TGG | + | chr6_3:23207095-23207114 | Msa0945040:CDS | 40.0% | |
| CACAGTCACTGACATCATTA+GGG | + | chr6_3:23207166-23207185 | Msa0945040:CDS | 40.0% | |
| TATCGACCATTTATCGACAG+TGG | + | chr6_3:23207196-23207215 | Msa0945040:CDS | 40.0% | |
| TCTCGGGATTTCATGGTAAT+TGG | - | chr6_3:23207398-23207417 | None:intergenic | 40.0% | |
| ! | ATGTTTCAATGAAAGTGCGC+GGG | + | chr6_3:23207552-23207571 | Msa0945040:CDS | 40.0% |
| !! | CTGATGAATAAGCACCGAAA+AGG | - | chr6_3:23207583-23207602 | None:intergenic | 40.0% |
| !! | TACTGTTGATTCAGAAGAGG+TGG | + | chr6_3:23207619-23207638 | Msa0945040:CDS | 40.0% |
| AGAGGTGGAATTCAGTTATG+AGG | + | chr6_3:23207634-23207653 | Msa0945040:CDS | 40.0% | |
| GACTATAGATTTGAGTGTGC+CGG | + | chr6_3:23207673-23207692 | Msa0945040:CDS | 40.0% | |
| !! | GGAACAAAGAGCATTGCTGA+AGG | + | chr6_3:23203567-23203586 | Msa0945040:five_prime_UTR | 45.0% |
| GCAGGAATATCTGTTGCTGA+TGG | + | chr6_3:23203670-23203689 | Msa0945040:CDS | 45.0% | |
| !! | CTTGATGGTGTTAGGGAAGA+AGG | + | chr6_3:23203696-23203715 | Msa0945040:CDS | 45.0% |
| GTTCTTGTTACTCCTGCTTC+TGG | + | chr6_3:23203742-23203761 | Msa0945040:CDS | 45.0% | |
| ATCAAAGAACCACCAGAAGC+AGG | - | chr6_3:23203757-23203776 | None:intergenic | 45.0% | |
| ACATACTCAAGCTTGCCAAC+AGG | - | chr6_3:23203835-23203854 | None:intergenic | 45.0% | |
| ! | AGGATTAAGGTGACCCCTTT+TGG | + | chr6_3:23204086-23204105 | Msa0945040:intron | 45.0% |
| ! | TGGTGGATGACTCAGAGAAT+GGG | + | chr6_3:23204229-23204248 | Msa0945040:CDS | 45.0% |
| ACTCAGAGAATGGGTAACTG+TGG | + | chr6_3:23204238-23204257 | Msa0945040:CDS | 45.0% | |
| ! | CCAAGATAGTTCTACCTACG+CGG | + | chr6_3:23204351-23204370 | Msa0945040:CDS | 45.0% |
| AAGAGGTAACAAAACCGCGT+AGG | - | chr6_3:23204368-23204387 | None:intergenic | 45.0% | |
| !!! | CGCGGTTTTGTTACCTCTTT+TGG | + | chr6_3:23204369-23204388 | Msa0945040:CDS | 45.0% |
| GATTTCAGGGCTGTTCTTCA+AGG | + | chr6_3:23204397-23204416 | Msa0945040:CDS | 45.0% | |
| ! | ACTAAACCATCGAGTTGCCT+AGG | + | chr6_3:23204532-23204551 | Msa0945040:intron | 45.0% |
| TTTGCTGGGTGCATGATTGT+AGG | + | chr6_3:23204591-23204610 | Msa0945040:intron | 45.0% | |
| GATTGTAGGATGTCCTGATG+TGG | + | chr6_3:23204605-23204624 | Msa0945040:intron | 45.0% | |
| CCATCAAATTCCTCCACATC+AGG | - | chr6_3:23204621-23204640 | None:intergenic | 45.0% | |
| CCTGATGTGGAGGAATTTGA+TGG | + | chr6_3:23204618-23204637 | Msa0945040:CDS | 45.0% | |
| !! | GGGACTCATTTGGTGTTCAT+TGG | + | chr6_3:23204639-23204658 | Msa0945040:CDS | 45.0% |
| TTGTCATCGCGAGAGAAAGA+AGG | + | chr6_3:23205029-23205048 | Msa0945040:CDS | 45.0% | |
| !! | ACTGGTTTGGATGGTGTACA+TGG | + | chr6_3:23205177-23205196 | Msa0945040:CDS | 45.0% |
| !! | CTGGTTTGGATGGTGTACAT+GGG | + | chr6_3:23205178-23205197 | Msa0945040:CDS | 45.0% |
| TGGATGGCAATCTGTTAGCA+TGG | + | chr6_3:23205394-23205413 | Msa0945040:CDS | 45.0% | |
| CAAATTCCAGAAAGACGGCA+AGG | + | chr6_3:23205599-23205618 | Msa0945040:CDS | 45.0% | |
| TGTGATGAATTCCCATGGCA+GGG | - | chr6_3:23205644-23205663 | None:intergenic | 45.0% | |
| ATGTGATGAATTCCCATGGC+AGG | - | chr6_3:23205645-23205664 | None:intergenic | 45.0% | |
| TATGTGTGGCACGCAATAAC+AGG | + | chr6_3:23205798-23205817 | Msa0945040:CDS | 45.0% | |
| GGCACGCAATAACAGGATAT+TGG | + | chr6_3:23205805-23205824 | Msa0945040:CDS | 45.0% | |
| GCAATAACAGGATATTGGGG+TGG | + | chr6_3:23205810-23205829 | Msa0945040:CDS | 45.0% | |
| ! | TATTGGGGTGGTGTTAAACC+TGG | + | chr6_3:23205822-23205841 | Msa0945040:CDS | 45.0% |
| ! | ATTGGGGTGGTGTTAAACCT+GGG | + | chr6_3:23205823-23205842 | Msa0945040:CDS | 45.0% |
| GGTGTTAAACCTGGGATTAG+TGG | + | chr6_3:23205831-23205850 | Msa0945040:CDS | 45.0% | |
| ! | TAAACCTGGGATTAGTGGCA+TGG | + | chr6_3:23205836-23205855 | Msa0945040:CDS | 45.0% |
| TGACTCCAGGAGATGAGATA+GGG | - | chr6_3:23205887-23205906 | None:intergenic | 45.0% | |
| TTGACTCCAGGAGATGAGAT+AGG | - | chr6_3:23205888-23205907 | None:intergenic | 45.0% | |
| GCCGAGTCCATTAATTGCAA+TGG | - | chr6_3:23205940-23205959 | None:intergenic | 45.0% | |
| ATCCTTGAAACTCTTGGAGC+AGG | + | chr6_3:23206056-23206075 | Msa0945040:CDS | 45.0% | |
| CTGGCTGCATAAATTCACCA+AGG | - | chr6_3:23206407-23206426 | None:intergenic | 45.0% | |
| GCAGCATGATATTCAGCCAT+CGG | - | chr6_3:23206557-23206576 | None:intergenic | 45.0% | |
| AAGATTGAAGTCGTGGTGTC+CGG | - | chr6_3:23206831-23206850 | None:intergenic | 45.0% | |
| ATCCTGCTAGAGATGGAAAG+AGG | + | chr6_3:23206933-23206952 | Msa0945040:CDS | 45.0% | |
| TACCTCTTTCCATCTCTAGC+AGG | - | chr6_3:23206938-23206957 | None:intergenic | 45.0% | |
| TCAATTGTCAAGGAGCTGGT+TGG | + | chr6_3:23207099-23207118 | Msa0945040:CDS | 45.0% | |
| GCACAGTCACTGACATCATT+AGG | + | chr6_3:23207165-23207184 | Msa0945040:CDS | 45.0% | |
| CATCTGCCACTGTCGATAAA+TGG | - | chr6_3:23207205-23207224 | None:intergenic | 45.0% | |
| CGACAGTGGCAGATGATAAA+TGG | + | chr6_3:23207210-23207229 | Msa0945040:CDS | 45.0% | |
| GTGGCAGATGATAAATGGAC+AGG | + | chr6_3:23207215-23207234 | Msa0945040:CDS | 45.0% | |
| GGAGCAAATTTGGCACCATT+TGG | - | chr6_3:23207458-23207477 | None:intergenic | 45.0% | |
| ! | GGTGCCAAATTTGCTCCTAT+TGG | + | chr6_3:23207461-23207480 | Msa0945040:CDS | 45.0% |
| ! | TCGGTGCTTATTCATCAGCT+CGG | + | chr6_3:23207585-23207604 | Msa0945040:CDS | 45.0% |
| GAAAAGATGACTGTAGGGGC+AGG | + | chr6_3:23203652-23203671 | Msa0945040:exon | 50.0% | |
| !! | AGGGAAGAAGGTTCTGAGTC+AGG | + | chr6_3:23203708-23203727 | Msa0945040:CDS | 50.0% |
| CTTGTTACTCCTGCTTCTGG+TGG | + | chr6_3:23203745-23203764 | Msa0945040:CDS | 50.0% | |
| AGTCGCAGAGTCTTTCCTGT+TGG | + | chr6_3:23203817-23203836 | Msa0945040:CDS | 50.0% | |
| !! | GTGGTGGATGACTCAGAGAA+TGG | + | chr6_3:23204228-23204247 | Msa0945040:CDS | 50.0% |
| AAGGGTCGTGATATTGACGG+AGG | + | chr6_3:23204307-23204326 | Msa0945040:CDS | 50.0% | |
| AGGGTCGTGATATTGACGGA+GGG | + | chr6_3:23204308-23204327 | Msa0945040:CDS | 50.0% | |
| CCGCGTAGGTAGAACTATCT+TGG | - | chr6_3:23204354-23204373 | None:intergenic | 50.0% | |
| TGTGATCCTAGGCAACTCGA+TGG | - | chr6_3:23204541-23204560 | None:intergenic | 50.0% | |
| AGTCTCAGCACTGTGATCCT+AGG | - | chr6_3:23204552-23204571 | None:intergenic | 50.0% | |
| TGTAGGATGTCCTGATGTGG+AGG | + | chr6_3:23204608-23204627 | Msa0945040:intron | 50.0% | |
| !! | CATTTGGTGTTCATTGGGGC+TGG | + | chr6_3:23204645-23204664 | Msa0945040:CDS | 50.0% |
| TCTGTTAGCATGGACCCCAA+TGG | + | chr6_3:23205404-23205423 | Msa0945040:CDS | 50.0% | |
| ! | TGGACCCCAATGGTGTTGAA+TGG | + | chr6_3:23205414-23205433 | Msa0945040:CDS | 50.0% |
| TTCCAGAAAGACGGCAAGGA+AGG | + | chr6_3:23205603-23205622 | Msa0945040:CDS | 50.0% | |
| AAGACGGCAAGGAAGGTCAT+CGG | + | chr6_3:23205610-23205629 | Msa0945040:CDS | 50.0% | |
| CAAGGAAGGTCATCGGATAG+AGG | + | chr6_3:23205617-23205636 | Msa0945040:CDS | 50.0% | |
| TGTTCCATGCCACTAATCCC+AGG | - | chr6_3:23205843-23205862 | None:intergenic | 50.0% | |
| GCTTTCCCTATCTCATCTCC+TGG | + | chr6_3:23205879-23205898 | Msa0945040:CDS | 50.0% | |
| CAGCGGATGCTAGATATGAG+TGG | - | chr6_3:23206004-23206023 | None:intergenic | 50.0% | |
| CACTCATATCTAGCATCCGC+TGG | + | chr6_3:23206002-23206021 | Msa0945040:CDS | 50.0% | |
| ! | CTAGCATCCGCTGGTATTGA+TGG | + | chr6_3:23206011-23206030 | Msa0945040:CDS | 50.0% |
| GTCCTGCTCCAAGAGTTTCA+AGG | - | chr6_3:23206061-23206080 | None:intergenic | 50.0% | |
| GAAACTCTTGGAGCAGGACA+TGG | + | chr6_3:23206062-23206081 | Msa0945040:CDS | 50.0% | |
| !! | CATTGGAGGCATCGATCTCT+AGG | + | chr6_3:23206120-23206139 | Msa0945040:CDS | 50.0% |
| ATGTTGTGTAGCGACAAGCC+CGG | + | chr6_3:23206809-23206828 | Msa0945040:intron | 50.0% | |
| AGATTGAAGTCGTGGTGTCC+GGG | - | chr6_3:23206830-23206849 | None:intergenic | 50.0% | |
| ACTTCCAGGAAGACCAACCA+AGG | + | chr6_3:23206895-23206914 | Msa0945040:CDS | 50.0% | |
| !! | CAATCCTTGGTTGGTCTTCC+TGG | - | chr6_3:23206902-23206921 | None:intergenic | 50.0% |
| CTGGATTCTCGTCGTGGATA+AGG | - | chr6_3:23207145-23207164 | None:intergenic | 50.0% | |
| CTTATCCACGACGAGAATCC+AGG | + | chr6_3:23207143-23207162 | Msa0945040:CDS | 50.0% | |
| ATGATGTCAGTGACTGTGCC+TGG | - | chr6_3:23207164-23207183 | None:intergenic | 50.0% | |
| GGGTCGTGATATTGACGGAG+GGG | + | chr6_3:23204309-23204328 | Msa0945040:CDS | 55.0% | |
| ATTGACGGAGGGGTTGACAG+TGG | + | chr6_3:23204319-23204338 | Msa0945040:CDS | 55.0% | |
| GACCTTCCTTGCCGTCTTTC+TGG | - | chr6_3:23205608-23205627 | None:intergenic | 55.0% | |
| ! | GGTTGGTTGGACTTGACTCC+AGG | - | chr6_3:23205900-23205919 | None:intergenic | 55.0% |
| ACTCTTGGAGCAGGACATGG+TGG | + | chr6_3:23206065-23206084 | Msa0945040:CDS | 55.0% | |
| CTCTTGGAGCAGGACATGGT+GGG | + | chr6_3:23206066-23206085 | Msa0945040:CDS | 55.0% | |
| GTGGGAGGGTGAAACTTGCA+AGG | + | chr6_3:23206084-23206103 | Msa0945040:CDS | 55.0% | |
| GTGTGAGATGCAGGGTCTCT+TGG | - | chr6_3:23206348-23206367 | None:intergenic | 55.0% | |
| CATGCTGCTGCAAGAGCAGT+TGG | + | chr6_3:23206569-23206588 | Msa0945040:CDS | 55.0% | |
| ! | GGAGCTGGTTGGTGCAAAGT+TGG | + | chr6_3:23207110-23207129 | Msa0945040:CDS | 55.0% |
| ! | TCAATGAAAGTGCGCGGGTG+TGG | + | chr6_3:23207557-23207576 | Msa0945040:CDS | 55.0% |
| TCGGATAGAGGACCCTGCCA+TGG | + | chr6_3:23205629-23205648 | Msa0945040:CDS | 60.0% | |
| CGGATAGAGGACCCTGCCAT+GGG | + | chr6_3:23205630-23205649 | Msa0945040:CDS | 60.0% | |
| ! | TTGGAGCAGGACATGGTGGG+AGG | + | chr6_3:23206069-23206088 | Msa0945040:CDS | 60.0% |
| ! | TGGAGCAGGACATGGTGGGA+GGG | + | chr6_3:23206070-23206089 | Msa0945040:CDS | 60.0% |
| GCTGCTGCAAGAGCAGTTGG+AGG | + | chr6_3:23206572-23206591 | Msa0945040:CDS | 60.0% | |
| CTGTGCCTGGATTCTCGTCG+TGG | - | chr6_3:23207151-23207170 | None:intergenic | 60.0% | |
| ! | GTGCGCGGGTGTGGCCTTTT+CGG | + | chr6_3:23207566-23207585 | Msa0945040:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 23203539 | 23207795 | 23203539 | ID=Msa0945040;Name=Msa0945040 |
| chr6_3 | mRNA | 23203539 | 23207795 | 23203539 | ID=Msa0945040-mRNA-1;Parent=Msa0945040;Name=Msa0945040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=119|1|1|1|1|1|13|59|760 |
| chr6_3 | exon | 23203539 | 23203848 | 23203539 | ID=Msa0945040-mRNA-1:exon:6600;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23204192 | 23204457 | 23204192 | ID=Msa0945040-mRNA-1:exon:6601;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23204613 | 23204703 | 23204613 | ID=Msa0945040-mRNA-1:exon:6602;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23205002 | 23205050 | 23205002 | ID=Msa0945040-mRNA-1:exon:6603;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23205161 | 23205252 | 23205161 | ID=Msa0945040-mRNA-1:exon:6604;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23205349 | 23205456 | 23205349 | ID=Msa0945040-mRNA-1:exon:6605;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23205563 | 23205697 | 23205563 | ID=Msa0945040-mRNA-1:exon:6606;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23205791 | 23206201 | 23205791 | ID=Msa0945040-mRNA-1:exon:6607;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23206302 | 23206443 | 23206302 | ID=Msa0945040-mRNA-1:exon:6608;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23206545 | 23206612 | 23206545 | ID=Msa0945040-mRNA-1:exon:6609;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23206820 | 23206954 | 23206820 | ID=Msa0945040-mRNA-1:exon:6610;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23207049 | 23207266 | 23207049 | ID=Msa0945040-mRNA-1:exon:6611;Parent=Msa0945040-mRNA-1 |
| chr6_3 | exon | 23207360 | 23207795 | 23207360 | ID=Msa0945040-mRNA-1:exon:6612;Parent=Msa0945040-mRNA-1 |
| chr6_3 | five_prime_UTR | 23203539 | 23203657 | 23203539 | ID=Msa0945040-mRNA-1:five_prime_utr;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23203658 | 23203848 | 23203658 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23204192 | 23204457 | 23204192 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23204613 | 23204703 | 23204613 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23205002 | 23205050 | 23205002 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23205161 | 23205252 | 23205161 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23205349 | 23205456 | 23205349 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23205563 | 23205697 | 23205563 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23205791 | 23206201 | 23205791 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23206302 | 23206443 | 23206302 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23206545 | 23206612 | 23206545 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23206820 | 23206954 | 23206820 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23207049 | 23207266 | 23207049 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | CDS | 23207360 | 23207736 | 23207360 | ID=Msa0945040-mRNA-1:cds;Parent=Msa0945040-mRNA-1 |
| chr6_3 | three_prime_UTR | 23207737 | 23207795 | 23207737 | ID=Msa0945040-mRNA-1:three_prime_utr;Parent=Msa0945040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
