Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870120 | RHN49902.1 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.59e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870120 | sp|Q67YE6|SAP12_ARATH | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.40e-72 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870120 | A0A396H9D4 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 7.59e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033970 | Msa0870120 | 0.854941 | 8.798480e-62 | -8.615850e-47 |
| Msa0081920 | Msa0870120 | 0.842233 | 2.929530e-58 | -8.615850e-47 |
| Msa0086190 | Msa0870120 | 0.804182 | 2.442093e-49 | -8.615850e-47 |
| Msa0087550 | Msa0870120 | 0.811696 | 6.154231e-51 | -8.615850e-47 |
| Msa0638820 | Msa0870120 | 0.809315 | 2.011017e-50 | -8.615850e-47 |
| Msa0652700 | Msa0870120 | 0.832568 | 8.774957e-56 | -8.615850e-47 |
| Msa0697520 | Msa0870120 | 0.806032 | 1.001453e-49 | -8.615850e-47 |
| Msa0708600 | Msa0870120 | 0.800026 | 1.748079e-48 | -8.615850e-47 |
| Msa0738400 | Msa0870120 | 0.804072 | 2.574068e-49 | -8.615850e-47 |
| Msa0831680 | Msa0870120 | 0.801222 | 9.970483e-49 | -8.615850e-47 |
| Msa0841030 | Msa0870120 | 0.821144 | 4.720642e-53 | -8.615850e-47 |
| Msa0128030 | Msa0870120 | 0.864444 | 1.211065e-64 | -8.615850e-47 |
| Msa0134270 | Msa0870120 | 0.816509 | 5.330429e-52 | -8.615850e-47 |
| Msa0182020 | Msa0870120 | 0.841149 | 5.661624e-58 | -8.615850e-47 |
| Msa0207260 | Msa0870120 | 0.857112 | 2.037855e-62 | -8.615850e-47 |
| Msa0224210 | Msa0870120 | 0.817089 | 3.951477e-52 | -8.615850e-47 |
| Msa0390790 | Msa0870120 | 0.815228 | 1.029412e-51 | -8.615850e-47 |
| Msa0414720 | Msa0870120 | 0.815319 | 9.827621e-52 | -8.615850e-47 |
| Msa0459630 | Msa0870120 | 0.838402 | 2.937225e-57 | -8.615850e-47 |
| Msa0480770 | Msa0870120 | 0.825479 | 4.584969e-54 | -8.615850e-47 |
| Msa0481740 | Msa0870120 | 0.821778 | 3.369574e-53 | -8.615850e-47 |
| Msa0481770 | Msa0870120 | 0.829216 | 5.826133e-55 | -8.615850e-47 |
| Msa0284730 | Msa0870120 | 0.807107 | 5.941237e-50 | -8.615850e-47 |
| Msa0506360 | Msa0870120 | 0.816778 | 4.641061e-52 | -8.615850e-47 |
| Msa0560280 | Msa0870120 | 0.818659 | 1.746114e-52 | -8.615850e-47 |
| Msa0858170 | Msa0870120 | 0.830138 | 3.476939e-55 | -8.615850e-47 |
| Msa0870120 | Msa0876790 | 0.813796 | 2.134571e-51 | -8.615850e-47 |
| Msa0870120 | Msa0935830 | 0.966109 | 1.749255e-125 | -8.615850e-47 |
| Msa0870120 | Msa0945230 | 0.826533 | 2.574385e-54 | -8.615850e-47 |
| Msa0870120 | Msa0973000 | 0.966594 | 3.944447e-126 | -8.615850e-47 |
| Msa0870120 | Msa1026080 | 0.833349 | 5.613262e-56 | -8.615850e-47 |
| Msa0870120 | Msa1080650 | 0.817384 | 3.391103e-52 | -8.615850e-47 |
| Msa0870120 | Msa1126440 | 0.819987 | 8.702189e-53 | -8.615850e-47 |
| Msa0870120 | Msa1127360 | 0.806139 | 9.508967e-50 | -8.615850e-47 |
| Msa0870120 | Msa1156490 | 0.815081 | 1.110023e-51 | -8.615850e-47 |
| Msa0870120 | Msa1217260 | 0.801260 | 9.793522e-49 | -8.615850e-47 |
| Msa0870120 | Msa1344220 | 0.812849 | 3.447288e-51 | -8.615850e-47 |
| Msa0870120 | Msa1349830 | 0.813637 | 2.313898e-51 | -8.615850e-47 |
| Msa0870120 | Msa1453600 | 0.830963 | 2.183518e-55 | -8.615850e-47 |
| Msa0870120 | Msa1464020 | 0.811721 | 6.077790e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870120 | MtrunA17_Chr6g0451591 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.46e-131 | 369 |
| Msa0870120 | MtrunA17_Chr7g0257681 | 46.763 | 139 | 67 | 2 | 5 | 139 | 2 | 137 | 3.60e-38 | 132 |
| Msa0870120 | MtrunA17_Chr1g0173421 | 48.921 | 139 | 64 | 2 | 5 | 139 | 2 | 137 | 4.15e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870120 | AT3G28210.2 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0870120 | AT3G28210.1 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0870120 | AT3G57480.2 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0870120 | AT3G57480.1 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0870120 | AT2G41835.1 | 51.079 | 139 | 61 | 3 | 5 | 139 | 2 | 137 | 3.49e-41 | 140 |
| Msa0870120 | AT5G48205.1 | 39.091 | 110 | 34 | 2 | 5 | 108 | 2 | 84 | 3.35e-15 | 70.9 |
Find 45 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACATTCATGTGACTTAT+AGG | 0.238124 | 6_1:-4410217 | None:intergenic |
| CTGTAAAACTTGCCACATTA+AGG | 0.277586 | 6_1:+4410443 | Msa0870120:CDS |
| TAAGGCTTATTGATTCTATA+TGG | 0.292885 | 6_1:+4410659 | Msa0870120:exon |
| CTGCTGTTGTGGTCTGGTTT+CGG | 0.299904 | 6_1:-4410237 | None:intergenic |
| TTAAAGAAACATCGTAGTTC+AGG | 0.309481 | 6_1:+4410336 | Msa0870120:CDS |
| AAGGACAAATAATAGGTTTC+TGG | 0.312800 | 6_1:+4410551 | Msa0870120:CDS |
| AATATTCAAAATTGAAACTA+TGG | 0.320064 | 6_1:+4409305 | Msa0870120:exon |
| CAAATGCAAGGACAAATAAT+AGG | 0.336795 | 6_1:+4410544 | Msa0870120:CDS |
| TAATAGGTTTCTGGCTGCTT+TGG | 0.338054 | 6_1:+4410560 | Msa0870120:CDS |
| TTGCAGCCATCACATGTAAA+AGG | 0.365120 | 6_1:-4409405 | None:intergenic |
| GCTGCTTTGGCTTCAAGAAA+TGG | 0.396007 | 6_1:+4410573 | Msa0870120:CDS |
| TCCTAGTAATCCTTCTGTTA+AGG | 0.396096 | 6_1:+4410641 | Msa0870120:CDS |
| ATCTCCTTGCAACGCTTCAC+GGG | 0.399170 | 6_1:-4410396 | None:intergenic |
| GTTGGTTTCTTCTTCTTGCT+AGG | 0.399693 | 6_1:-4410369 | None:intergenic |
| AATCTCCTTGCAACGCTTCA+CGG | 0.405276 | 6_1:-4410397 | None:intergenic |
| TGGCAATGTTTACCTAAATC+TGG | 0.409207 | 6_1:-4409351 | None:intergenic |
| TGAAGAATGCTCCATGTCTA+TGG | 0.426712 | 6_1:+4410275 | Msa0870120:CDS |
| AAAATTGAAACTATGGCATC+AGG | 0.440213 | 6_1:+4409312 | Msa0870120:exon |
| TTGGTTTCTTCTTCTTGCTA+GGG | 0.455380 | 6_1:-4410368 | None:intergenic |
| CAACGCTTCACGGGGCAAGT+TGG | 0.457687 | 6_1:-4410387 | None:intergenic |
| TACATGTGATGGCTGCAAAC+AGG | 0.460591 | 6_1:+4409410 | Msa0870120:CDS |
| TAAAGAAACATCGTAGTTCA+GGG | 0.514380 | 6_1:+4410337 | Msa0870120:CDS |
| TATGGTTAATGTGTAATACA+TGG | 0.526900 | 6_1:+4410677 | Msa0870120:three_prime_UTR |
| AGGATTACTAGGAGGAGAAG+TGG | 0.527657 | 6_1:-4410631 | None:intergenic |
| GCCTTAACAGAAGGATTACT+AGG | 0.531652 | 6_1:-4410642 | None:intergenic |
| TATGGAGATCACAGGCAACA+TGG | 0.561346 | 6_1:+4410293 | Msa0870120:CDS |
| TAAAAGGAAGGAAATCAAGC+TGG | 0.567522 | 6_1:-4409389 | None:intergenic |
| AATCAATAAGCCTTAACAGA+AGG | 0.575911 | 6_1:-4410651 | None:intergenic |
| TGCAACAGCAGTTGTTGATG+AGG | 0.577728 | 6_1:-4410523 | None:intergenic |
| GCTGATCATGCTTGTAGTAG+AGG | 0.580042 | 6_1:+4410489 | Msa0870120:CDS |
| AAGCATGATCAGCAGCAAAA+CGG | 0.580672 | 6_1:-4410479 | None:intergenic |
| CAACTGCTGTTGCAAATGCA+AGG | 0.582464 | 6_1:+4410532 | Msa0870120:CDS |
| CAGCAGCAAAACGGTGCTTG+AGG | 0.584113 | 6_1:-4410470 | None:intergenic |
| TCCATGTCTATGGAGATCAC+AGG | 0.587969 | 6_1:+4410285 | Msa0870120:CDS |
| ATGGAGATCACAGGCAACAT+GGG | 0.594572 | 6_1:+4410294 | Msa0870120:CDS |
| GCTGGTGACAATCAACATGC+TGG | 0.594811 | 6_1:-4409371 | None:intergenic |
| ATGGTTAATGTGTAATACAT+GGG | 0.606158 | 6_1:+4410678 | Msa0870120:three_prime_UTR |
| TTGCCCCGTGAAGCGTTGCA+AGG | 0.613440 | 6_1:+4410392 | Msa0870120:CDS |
| ATTGAAACTATGGCATCAGG+TGG | 0.618057 | 6_1:+4409315 | Msa0870120:exon |
| GCCTGTGATCTCCATAGACA+TGG | 0.623654 | 6_1:-4410286 | None:intergenic |
| AGCCATCACATGTAAAAGGA+AGG | 0.626659 | 6_1:-4409401 | None:intergenic |
| GCTTGAGGCACACCTTAATG+TGG | 0.642622 | 6_1:-4410455 | None:intergenic |
| TCTCCTTGCAACGCTTCACG+GGG | 0.654277 | 6_1:-4410395 | None:intergenic |
| TTAACAGAAGGATTACTAGG+AGG | 0.691197 | 6_1:-4410639 | None:intergenic |
| CAACATGGGAGAAAACGAAG+AGG | 0.737384 | 6_1:+4410308 | Msa0870120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACATAATTTATAATAAC+AGG | + | chr6_1:4410173-4410192 | Msa0870120:intron | 10.0% |
| !! | TTAACATAATTTATAATAAC+AGG | + | chr6_1:4410173-4410192 | Msa0870120:intron | 10.0% |
| !! | AATATTCAAAATTGAAACTA+TGG | + | chr6_1:4409305-4409324 | Msa0870120:exon | 15.0% |
| !! | AATATTCAAAATTGAAACTA+TGG | + | chr6_1:4409305-4409324 | Msa0870120:exon | 15.0% |
| !! | TGAAATACAATAAGAACATA+AGG | - | chr6_1:4409669-4409688 | None:intergenic | 20.0% |
| !! | TGTAGTATAATCAAATATGT+TGG | + | chr6_1:4409707-4409726 | Msa0870120:intron | 20.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | - | chr6_1:4409969-4409988 | None:intergenic | 20.0% |
| !! | TGAAATACAATAAGAACATA+AGG | - | chr6_1:4409669-4409688 | None:intergenic | 20.0% |
| !! | TGTAGTATAATCAAATATGT+TGG | + | chr6_1:4409707-4409726 | Msa0870120:intron | 20.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | - | chr6_1:4409969-4409988 | None:intergenic | 20.0% |
| ! | CAGTCAAGTATATAACTAAT+CGG | - | chr6_1:4409473-4409492 | None:intergenic | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | + | chr6_1:4409712-4409731 | Msa0870120:intron | 25.0% |
| !! | ATAATCAAATATGTTGGTCT+GGG | + | chr6_1:4409713-4409732 | Msa0870120:intron | 25.0% |
| ! | TTCAAATTTGTCAAATCATG+TGG | + | chr6_1:4409769-4409788 | Msa0870120:intron | 25.0% |
| ! | TTTGCAGTATAATCATATGT+TGG | + | chr6_1:4409887-4409906 | Msa0870120:intron | 25.0% |
| !! | AGTATAATCATATGTTGGTT+TGG | + | chr6_1:4409892-4409911 | Msa0870120:intron | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | + | chr6_1:4410147-4410166 | Msa0870120:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | + | chr6_1:4410185-4410204 | Msa0870120:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | + | chr6_1:4410659-4410678 | Msa0870120:exon | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | + | chr6_1:4410677-4410696 | Msa0870120:three_prime_UTR | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | + | chr6_1:4410678-4410697 | Msa0870120:three_prime_UTR | 25.0% |
| ! | CAGTCAAGTATATAACTAAT+CGG | - | chr6_1:4409473-4409492 | None:intergenic | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | + | chr6_1:4409712-4409731 | Msa0870120:intron | 25.0% |
| !! | ATAATCAAATATGTTGGTCT+GGG | + | chr6_1:4409713-4409732 | Msa0870120:intron | 25.0% |
| ! | TTCAAATTTGTCAAATCATG+TGG | + | chr6_1:4409769-4409788 | Msa0870120:intron | 25.0% |
| ! | TTTGCAGTATAATCATATGT+TGG | + | chr6_1:4409887-4409906 | Msa0870120:intron | 25.0% |
| !! | AGTATAATCATATGTTGGTT+TGG | + | chr6_1:4409892-4409911 | Msa0870120:intron | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | + | chr6_1:4410147-4410166 | Msa0870120:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | + | chr6_1:4410185-4410204 | Msa0870120:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | + | chr6_1:4410659-4410678 | Msa0870120:exon | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | + | chr6_1:4410677-4410696 | Msa0870120:three_prime_UTR | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | + | chr6_1:4410678-4410697 | Msa0870120:three_prime_UTR | 25.0% |
| AAAATTGAAACTATGGCATC+AGG | + | chr6_1:4409312-4409331 | Msa0870120:exon | 30.0% | |
| TCAGTTTGCAAGAAATAAAG+AGG | - | chr6_1:4409551-4409570 | None:intergenic | 30.0% | |
| ! | TCTTTATTTCTTGCAAACTG+AGG | + | chr6_1:4409550-4409569 | Msa0870120:intron | 30.0% |
| ! | CTTTATTTCTTGCAAACTGA+GGG | + | chr6_1:4409551-4409570 | Msa0870120:intron | 30.0% |
| TTCAAATGTGTCAAATCATG+TGG | + | chr6_1:4410013-4410032 | Msa0870120:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | + | chr6_1:4410336-4410355 | Msa0870120:CDS | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | + | chr6_1:4410337-4410356 | Msa0870120:CDS | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | + | chr6_1:4410544-4410563 | Msa0870120:CDS | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | + | chr6_1:4410551-4410570 | Msa0870120:CDS | 30.0% | |
| AATCAATAAGCCTTAACAGA+AGG | - | chr6_1:4410654-4410673 | None:intergenic | 30.0% | |
| AAAATTGAAACTATGGCATC+AGG | + | chr6_1:4409312-4409331 | Msa0870120:exon | 30.0% | |
| TCAGTTTGCAAGAAATAAAG+AGG | - | chr6_1:4409551-4409570 | None:intergenic | 30.0% | |
| ! | TCTTTATTTCTTGCAAACTG+AGG | + | chr6_1:4409550-4409569 | Msa0870120:intron | 30.0% |
| ! | CTTTATTTCTTGCAAACTGA+GGG | + | chr6_1:4409551-4409570 | Msa0870120:intron | 30.0% |
| TTCAAATGTGTCAAATCATG+TGG | + | chr6_1:4410013-4410032 | Msa0870120:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | + | chr6_1:4410336-4410355 | Msa0870120:CDS | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | + | chr6_1:4410337-4410356 | Msa0870120:CDS | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | + | chr6_1:4410544-4410563 | Msa0870120:CDS | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | + | chr6_1:4410551-4410570 | Msa0870120:CDS | 30.0% | |
| AATCAATAAGCCTTAACAGA+AGG | - | chr6_1:4410654-4410673 | None:intergenic | 30.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | + | chr6_1:4409339-4409358 | Msa0870120:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | - | chr6_1:4409354-4409373 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | - | chr6_1:4409392-4409411 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | + | chr6_1:4409399-4409418 | Msa0870120:CDS | 35.0% |
| TCACGTGATTAGTAAACTTC+AGG | + | chr6_1:4409798-4409817 | Msa0870120:intron | 35.0% | |
| ! | CTCTATTTCTTGCAAACTGA+TGG | + | chr6_1:4409858-4409877 | Msa0870120:intron | 35.0% |
| !! | ATGTTGGTTTGGTCAAGATT+TGG | + | chr6_1:4409903-4409922 | Msa0870120:intron | 35.0% |
| TCAGGTGATCAATAAACTTC+AGG | + | chr6_1:4410042-4410061 | Msa0870120:intron | 35.0% | |
| ! | CCAAAGTTTGTTTGAGTCAA+AGG | - | chr6_1:4410102-4410121 | None:intergenic | 35.0% |
| CCTTTGACTCAAACAAACTT+TGG | + | chr6_1:4410099-4410118 | Msa0870120:intron | 35.0% | |
| TTGGTTTCTTCTTCTTGCTA+GGG | - | chr6_1:4410371-4410390 | None:intergenic | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | + | chr6_1:4410443-4410462 | Msa0870120:CDS | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | + | chr6_1:4410597-4410616 | Msa0870120:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | - | chr6_1:4410610-4410629 | None:intergenic | 35.0% |
| TTAACAGAAGGATTACTAGG+AGG | - | chr6_1:4410642-4410661 | None:intergenic | 35.0% | |
| TCCTAGTAATCCTTCTGTTA+AGG | + | chr6_1:4410641-4410660 | Msa0870120:CDS | 35.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | + | chr6_1:4409339-4409358 | Msa0870120:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | - | chr6_1:4409354-4409373 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | - | chr6_1:4409392-4409411 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | + | chr6_1:4409399-4409418 | Msa0870120:CDS | 35.0% |
| TCACGTGATTAGTAAACTTC+AGG | + | chr6_1:4409798-4409817 | Msa0870120:intron | 35.0% | |
| ! | CTCTATTTCTTGCAAACTGA+TGG | + | chr6_1:4409858-4409877 | Msa0870120:intron | 35.0% |
| !! | ATGTTGGTTTGGTCAAGATT+TGG | + | chr6_1:4409903-4409922 | Msa0870120:intron | 35.0% |
| TCAGGTGATCAATAAACTTC+AGG | + | chr6_1:4410042-4410061 | Msa0870120:intron | 35.0% | |
| ! | CCAAAGTTTGTTTGAGTCAA+AGG | - | chr6_1:4410102-4410121 | None:intergenic | 35.0% |
| CCTTTGACTCAAACAAACTT+TGG | + | chr6_1:4410099-4410118 | Msa0870120:intron | 35.0% | |
| TTGGTTTCTTCTTCTTGCTA+GGG | - | chr6_1:4410371-4410390 | None:intergenic | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | + | chr6_1:4410443-4410462 | Msa0870120:CDS | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | + | chr6_1:4410597-4410616 | Msa0870120:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | - | chr6_1:4410610-4410629 | None:intergenic | 35.0% |
| TTAACAGAAGGATTACTAGG+AGG | - | chr6_1:4410642-4410661 | None:intergenic | 35.0% | |
| TCCTAGTAATCCTTCTGTTA+AGG | + | chr6_1:4410641-4410660 | Msa0870120:CDS | 35.0% | |
| ATTGAAACTATGGCATCAGG+TGG | + | chr6_1:4409315-4409334 | Msa0870120:exon | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | - | chr6_1:4409404-4409423 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | - | chr6_1:4409408-4409427 | None:intergenic | 40.0% | |
| CAAATCATGTGGTTGAGTTC+AGG | + | chr6_1:4410024-4410043 | Msa0870120:intron | 40.0% | |
| CGATTGAAAACACCTGAGTT+CGG | + | chr6_1:4410076-4410095 | Msa0870120:intron | 40.0% | |
| CGGACATTCATGTGACTTAT+AGG | - | chr6_1:4410220-4410239 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | - | chr6_1:4410251-4410270 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | + | chr6_1:4410275-4410294 | Msa0870120:CDS | 40.0% | |
| ! | GTTGGTTTCTTCTTCTTGCT+AGG | - | chr6_1:4410372-4410391 | None:intergenic | 40.0% |
| AAGCATGATCAGCAGCAAAA+CGG | - | chr6_1:4410482-4410501 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | + | chr6_1:4410560-4410579 | Msa0870120:CDS | 40.0% |
| GCCTTAACAGAAGGATTACT+AGG | - | chr6_1:4410645-4410664 | None:intergenic | 40.0% | |
| ATTGAAACTATGGCATCAGG+TGG | + | chr6_1:4409315-4409334 | Msa0870120:exon | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | - | chr6_1:4409404-4409423 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | - | chr6_1:4409408-4409427 | None:intergenic | 40.0% | |
| CAAATCATGTGGTTGAGTTC+AGG | + | chr6_1:4410024-4410043 | Msa0870120:intron | 40.0% | |
| CGATTGAAAACACCTGAGTT+CGG | + | chr6_1:4410076-4410095 | Msa0870120:intron | 40.0% | |
| CGGACATTCATGTGACTTAT+AGG | - | chr6_1:4410220-4410239 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | - | chr6_1:4410251-4410270 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | + | chr6_1:4410275-4410294 | Msa0870120:CDS | 40.0% | |
| ! | GTTGGTTTCTTCTTCTTGCT+AGG | - | chr6_1:4410372-4410391 | None:intergenic | 40.0% |
| AAGCATGATCAGCAGCAAAA+CGG | - | chr6_1:4410482-4410501 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | + | chr6_1:4410560-4410579 | Msa0870120:CDS | 40.0% |
| GCCTTAACAGAAGGATTACT+AGG | - | chr6_1:4410645-4410664 | None:intergenic | 40.0% | |
| TACATGTGATGGCTGCAAAC+AGG | + | chr6_1:4409410-4409429 | Msa0870120:CDS | 45.0% | |
| CGACCAAAAACACCTGAGTT+CGG | + | chr6_1:4409832-4409851 | Msa0870120:intron | 45.0% | |
| ! | AGACCGAACTCAGGTGTTTT+TGG | - | chr6_1:4409838-4409857 | None:intergenic | 45.0% |
| GAAATAGAGAGACCGAACTC+AGG | - | chr6_1:4409847-4409866 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | - | chr6_1:4410246-4410265 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | + | chr6_1:4410285-4410304 | Msa0870120:CDS | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | + | chr6_1:4410293-4410312 | Msa0870120:CDS | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | + | chr6_1:4410294-4410313 | Msa0870120:CDS | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | + | chr6_1:4410308-4410327 | Msa0870120:CDS | 45.0% | |
| AATCTCCTTGCAACGCTTCA+CGG | - | chr6_1:4410400-4410419 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | + | chr6_1:4410489-4410508 | Msa0870120:CDS | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | - | chr6_1:4410526-4410545 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | + | chr6_1:4410532-4410551 | Msa0870120:CDS | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | + | chr6_1:4410573-4410592 | Msa0870120:CDS | 45.0% |
| AGGATTACTAGGAGGAGAAG+TGG | - | chr6_1:4410634-4410653 | None:intergenic | 45.0% | |
| TACATGTGATGGCTGCAAAC+AGG | + | chr6_1:4409410-4409429 | Msa0870120:CDS | 45.0% | |
| CGACCAAAAACACCTGAGTT+CGG | + | chr6_1:4409832-4409851 | Msa0870120:intron | 45.0% | |
| ! | AGACCGAACTCAGGTGTTTT+TGG | - | chr6_1:4409838-4409857 | None:intergenic | 45.0% |
| GAAATAGAGAGACCGAACTC+AGG | - | chr6_1:4409847-4409866 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | - | chr6_1:4410246-4410265 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | + | chr6_1:4410285-4410304 | Msa0870120:CDS | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | + | chr6_1:4410293-4410312 | Msa0870120:CDS | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | + | chr6_1:4410294-4410313 | Msa0870120:CDS | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | + | chr6_1:4410308-4410327 | Msa0870120:CDS | 45.0% | |
| AATCTCCTTGCAACGCTTCA+CGG | - | chr6_1:4410400-4410419 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | + | chr6_1:4410489-4410508 | Msa0870120:CDS | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | - | chr6_1:4410526-4410545 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | + | chr6_1:4410532-4410551 | Msa0870120:CDS | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | + | chr6_1:4410573-4410592 | Msa0870120:CDS | 45.0% |
| AGGATTACTAGGAGGAGAAG+TGG | - | chr6_1:4410634-4410653 | None:intergenic | 45.0% | |
| !!! | ATATATATTTTTCATTTTAA+TGG | - | chr6_1:4409977-4409996 | None:intergenic | 5.0% |
| !!! | ATATATATTTTTCATTTTAA+TGG | - | chr6_1:4409977-4409996 | None:intergenic | 5.0% |
| GCTGGTGACAATCAACATGC+TGG | - | chr6_1:4409374-4409393 | None:intergenic | 50.0% | |
| TTGAGTCAAAGGCCGAACTC+AGG | - | chr6_1:4410091-4410110 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | - | chr6_1:4410240-4410259 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | - | chr6_1:4410289-4410308 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | - | chr6_1:4410399-4410418 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | - | chr6_1:4410458-4410477 | None:intergenic | 50.0% | |
| GCTGGTGACAATCAACATGC+TGG | - | chr6_1:4409374-4409393 | None:intergenic | 50.0% | |
| TTGAGTCAAAGGCCGAACTC+AGG | - | chr6_1:4410091-4410110 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | - | chr6_1:4410240-4410259 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | - | chr6_1:4410289-4410308 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | - | chr6_1:4410399-4410418 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | - | chr6_1:4410458-4410477 | None:intergenic | 50.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | - | chr6_1:4410398-4410417 | None:intergenic | 55.0% | |
| CAGCAGCAAAACGGTGCTTG+AGG | - | chr6_1:4410473-4410492 | None:intergenic | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | - | chr6_1:4410398-4410417 | None:intergenic | 55.0% | |
| CAGCAGCAAAACGGTGCTTG+AGG | - | chr6_1:4410473-4410492 | None:intergenic | 55.0% | |
| CAACGCTTCACGGGGCAAGT+TGG | - | chr6_1:4410390-4410409 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | + | chr6_1:4410392-4410411 | Msa0870120:CDS | 60.0% |
| CAACGCTTCACGGGGCAAGT+TGG | - | chr6_1:4410390-4410409 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | + | chr6_1:4410392-4410411 | Msa0870120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4409255 | 4410747 | 4409255 | ID=Msa0870120;Name=Msa0870120 |
| chr6_1 | mRNA | 4409255 | 4410747 | 4409255 | ID=Msa0870120-mRNA-1;Parent=Msa0870120;Name=Msa0870120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=69|1|1|1|1|1|2|76|194 |
| chr6_1 | exon | 4409255 | 4409431 | 4409255 | ID=Msa0870120-mRNA-1:exon:1410;Parent=Msa0870120-mRNA-1 |
| chr6_1 | exon | 4410195 | 4410747 | 4410195 | ID=Msa0870120-mRNA-1:exon:1411;Parent=Msa0870120-mRNA-1 |
| chr6_1 | five_prime_UTR | 4409255 | 4409323 | 4409255 | ID=Msa0870120-mRNA-1:five_prime_utr;Parent=Msa0870120-mRNA-1 |
| chr6_1 | CDS | 4409324 | 4409431 | 4409324 | ID=Msa0870120-mRNA-1:cds;Parent=Msa0870120-mRNA-1 |
| chr6_1 | CDS | 4410195 | 4410671 | 4410195 | ID=Msa0870120-mRNA-1:cds;Parent=Msa0870120-mRNA-1 |
| chr6_1 | three_prime_UTR | 4410672 | 4410747 | 4410672 | ID=Msa0870120-mRNA-1:three_prime_utr;Parent=Msa0870120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
