Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973000 | RHN49902.1 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.59e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973000 | sp|Q67YE6|SAP12_ARATH | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.40e-72 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973000 | A0A396H9D4 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 7.59e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033970 | Msa0973000 | 0.861567 | 9.371025e-64 | -8.615850e-47 |
| Msa0039890 | Msa0973000 | 0.802824 | 4.670969e-49 | -8.615850e-47 |
| Msa0081920 | Msa0973000 | 0.857685 | 1.379104e-62 | -8.615850e-47 |
| Msa0087550 | Msa0973000 | 0.803088 | 4.119827e-49 | -8.615850e-47 |
| Msa0638820 | Msa0973000 | 0.804431 | 2.167905e-49 | -8.615850e-47 |
| Msa0652700 | Msa0973000 | 0.848524 | 5.801119e-60 | -8.615850e-47 |
| Msa0697510 | Msa0973000 | 0.802591 | 5.217948e-49 | -8.615850e-47 |
| Msa0697520 | Msa0973000 | 0.803979 | 2.691549e-49 | -8.615850e-47 |
| Msa0738400 | Msa0973000 | 0.828391 | 9.227354e-55 | -8.615850e-47 |
| Msa0826360 | Msa0973000 | 0.803675 | 3.112378e-49 | -8.615850e-47 |
| Msa0831680 | Msa0973000 | 0.804182 | 2.441818e-49 | -8.615850e-47 |
| Msa0841030 | Msa0973000 | 0.836306 | 1.011198e-56 | -8.615850e-47 |
| Msa0128030 | Msa0973000 | 0.877461 | 6.167398e-69 | -8.615850e-47 |
| Msa0134270 | Msa0973000 | 0.810277 | 1.248911e-50 | -8.615850e-47 |
| Msa0182020 | Msa0973000 | 0.826571 | 2.522377e-54 | -8.615850e-47 |
| Msa0207260 | Msa0973000 | 0.872884 | 2.255761e-67 | -8.615850e-47 |
| Msa0224210 | Msa0973000 | 0.828013 | 1.138309e-54 | -8.615850e-47 |
| Msa0390790 | Msa0973000 | 0.828282 | 9.801298e-55 | -8.615850e-47 |
| Msa0414720 | Msa0973000 | 0.824844 | 6.476544e-54 | -8.615850e-47 |
| Msa0459630 | Msa0973000 | 0.838459 | 2.840487e-57 | -8.615850e-47 |
| Msa0477660 | Msa0973000 | 0.803877 | 2.826687e-49 | -8.615850e-47 |
| Msa0480770 | Msa0973000 | 0.838059 | 3.600163e-57 | -8.615850e-47 |
| Msa0481740 | Msa0973000 | 0.840029 | 1.112213e-57 | -8.615850e-47 |
| Msa0481770 | Msa0973000 | 0.835710 | 1.432184e-56 | -8.615850e-47 |
| Msa0253120 | Msa0973000 | 0.821926 | 3.114142e-53 | -8.615850e-47 |
| Msa0284730 | Msa0973000 | 0.803843 | 2.873247e-49 | -8.615850e-47 |
| Msa0291900 | Msa0973000 | 0.824299 | 8.704292e-54 | -8.615850e-47 |
| Msa0508160 | Msa0973000 | 0.802783 | 4.763052e-49 | -8.615850e-47 |
| Msa0521720 | Msa0973000 | 0.805598 | 1.235706e-49 | -8.615850e-47 |
| Msa0560280 | Msa0973000 | 0.818510 | 1.887414e-52 | -8.615850e-47 |
| Msa0858170 | Msa0973000 | 0.822788 | 1.963561e-53 | -8.615850e-47 |
| Msa0870120 | Msa0973000 | 0.966594 | 3.944447e-126 | -8.615850e-47 |
| Msa0876790 | Msa0973000 | 0.813420 | 2.582450e-51 | -8.615850e-47 |
| Msa0935830 | Msa0973000 | 0.990926 | 5.194651e-185 | -8.615850e-47 |
| Msa0945230 | Msa0973000 | 0.838403 | 2.935968e-57 | -8.615850e-47 |
| Msa0973000 | Msa0979050 | 0.804208 | 2.412081e-49 | -8.615850e-47 |
| Msa0973000 | Msa0986160 | 0.804982 | 1.663177e-49 | -8.615850e-47 |
| Msa0973000 | Msa1026080 | 0.824174 | 9.311253e-54 | -8.615850e-47 |
| Msa0973000 | Msa1039650 | 0.802289 | 6.019528e-49 | -8.615850e-47 |
| Msa0973000 | Msa1080650 | 0.835847 | 1.321959e-56 | -8.615850e-47 |
| Msa0973000 | Msa1126440 | 0.837580 | 4.781133e-57 | -8.615850e-47 |
| Msa0973000 | Msa1156490 | 0.810373 | 1.190776e-50 | -8.615850e-47 |
| Msa0973000 | Msa1344220 | 0.810831 | 9.478672e-51 | -8.615850e-47 |
| Msa0973000 | Msa1349830 | 0.811373 | 7.233869e-51 | -8.615850e-47 |
| Msa0973000 | Msa1453600 | 0.833658 | 4.698961e-56 | -8.615850e-47 |
| Msa0973000 | Msa1459930 | 0.800646 | 1.307401e-48 | -8.615850e-47 |
| Msa0973000 | Msa1464020 | 0.818071 | 2.373195e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973000 | MtrunA17_Chr6g0451591 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.46e-131 | 369 |
| Msa0973000 | MtrunA17_Chr7g0257681 | 46.763 | 139 | 67 | 2 | 5 | 139 | 2 | 137 | 3.60e-38 | 132 |
| Msa0973000 | MtrunA17_Chr1g0173421 | 48.921 | 139 | 64 | 2 | 5 | 139 | 2 | 137 | 4.15e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973000 | AT3G28210.2 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0973000 | AT3G28210.1 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0973000 | AT3G57480.2 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0973000 | AT3G57480.1 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0973000 | AT2G41835.1 | 51.079 | 139 | 61 | 3 | 5 | 139 | 2 | 137 | 3.49e-41 | 140 |
| Msa0973000 | AT5G48205.1 | 39.091 | 110 | 34 | 2 | 5 | 108 | 2 | 84 | 3.35e-15 | 70.9 |
Find 45 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACATTCATGTGACTTAT+AGG | 0.238124 | 6_4:-5329232 | None:intergenic |
| CTGTAAAACTTGCCACATTA+AGG | 0.277586 | 6_4:+5329458 | Msa0973000:CDS |
| TAAGGCTTATTGATTCTATA+TGG | 0.292885 | 6_4:+5329674 | Msa0973000:exon |
| CTGCTGTTGTGGTCTGGTTT+CGG | 0.299904 | 6_4:-5329252 | None:intergenic |
| TTAAAGAAACATCGTAGTTC+AGG | 0.309481 | 6_4:+5329351 | Msa0973000:CDS |
| AAGGACAAATAATAGGTTTC+TGG | 0.312800 | 6_4:+5329566 | Msa0973000:CDS |
| AATATTCAAAATTGAAACTA+TGG | 0.320064 | 6_4:+5328365 | Msa0973000:exon |
| CAAATGCAAGGACAAATAAT+AGG | 0.336795 | 6_4:+5329559 | Msa0973000:CDS |
| TAATAGGTTTCTGGCTGCTT+TGG | 0.338054 | 6_4:+5329575 | Msa0973000:CDS |
| TTGCAGCCATCACATGTAAA+AGG | 0.365120 | 6_4:-5328465 | None:intergenic |
| GCTGCTTTGGCTTCAAGAAA+TGG | 0.396007 | 6_4:+5329588 | Msa0973000:CDS |
| ATCTCCTTGCAACGCTTCAC+GGG | 0.399170 | 6_4:-5329411 | None:intergenic |
| GTTGGTTTCTTCTTCTTGCT+AGG | 0.399693 | 6_4:-5329384 | None:intergenic |
| AATCTCCTTGCAACGCTTCA+CGG | 0.405276 | 6_4:-5329412 | None:intergenic |
| TGGCAATGTTTACCTAAATC+TGG | 0.409207 | 6_4:-5328411 | None:intergenic |
| TGAAGAATGCTCCATGTCTA+TGG | 0.426712 | 6_4:+5329290 | Msa0973000:CDS |
| AAAATTGAAACTATGGCATC+AGG | 0.440213 | 6_4:+5328372 | Msa0973000:exon |
| TCCTAGTAATCCATCTGTTA+AGG | 0.442872 | 6_4:+5329656 | Msa0973000:CDS |
| TTGGTTTCTTCTTCTTGCTA+GGG | 0.455380 | 6_4:-5329383 | None:intergenic |
| CAACGCTTCACGGGGCAAGT+TGG | 0.457687 | 6_4:-5329402 | None:intergenic |
| TACATGTGATGGCTGCAAAC+AGG | 0.464886 | 6_4:+5328470 | Msa0973000:CDS |
| GCCTTAACAGATGGATTACT+AGG | 0.510314 | 6_4:-5329657 | None:intergenic |
| TAAAGAAACATCGTAGTTCA+GGG | 0.514380 | 6_4:+5329352 | Msa0973000:CDS |
| TATGGTTAATGTGTAATACA+TGG | 0.526900 | 6_4:+5329692 | Msa0973000:three_prime_UTR |
| AATCAATAAGCCTTAACAGA+TGG | 0.544659 | 6_4:-5329666 | None:intergenic |
| TATGGAGATCACAGGCAACA+TGG | 0.561346 | 6_4:+5329308 | Msa0973000:CDS |
| TAAAAGGAAGGAAATCAAGC+TGG | 0.567522 | 6_4:-5328449 | None:intergenic |
| TGGATTACTAGGAGGAGAAG+TGG | 0.568210 | 6_4:-5329646 | None:intergenic |
| TGCAACAGCAGTTGTTGATG+AGG | 0.577728 | 6_4:-5329538 | None:intergenic |
| GCTGATCATGCTTGTAGTAG+AGG | 0.580042 | 6_4:+5329504 | Msa0973000:CDS |
| AAGCATGATCAGCAGCAAAA+CGG | 0.580672 | 6_4:-5329494 | None:intergenic |
| CAACTGCTGTTGCAAATGCA+AGG | 0.582464 | 6_4:+5329547 | Msa0973000:CDS |
| CAGCAGCAAAACGGTGCTTG+AGG | 0.584113 | 6_4:-5329485 | None:intergenic |
| TCCATGTCTATGGAGATCAC+AGG | 0.587969 | 6_4:+5329300 | Msa0973000:CDS |
| ATGGAGATCACAGGCAACAT+GGG | 0.594572 | 6_4:+5329309 | Msa0973000:CDS |
| GCTGGTGACAATCAACATGC+TGG | 0.594811 | 6_4:-5328431 | None:intergenic |
| ATGGTTAATGTGTAATACAT+GGG | 0.606158 | 6_4:+5329693 | Msa0973000:three_prime_UTR |
| TTGCCCCGTGAAGCGTTGCA+AGG | 0.613440 | 6_4:+5329407 | Msa0973000:CDS |
| ATTGAAACTATGGCATCAGG+TGG | 0.618057 | 6_4:+5328375 | Msa0973000:exon |
| GCCTGTGATCTCCATAGACA+TGG | 0.623654 | 6_4:-5329301 | None:intergenic |
| AGCCATCACATGTAAAAGGA+AGG | 0.626659 | 6_4:-5328461 | None:intergenic |
| GCTTGAGGCACACCTTAATG+TGG | 0.642622 | 6_4:-5329470 | None:intergenic |
| TCTCCTTGCAACGCTTCACG+GGG | 0.654277 | 6_4:-5329410 | None:intergenic |
| TTAACAGATGGATTACTAGG+AGG | 0.670885 | 6_4:-5329654 | None:intergenic |
| CAACATGGGAGAAAACGAAG+AGG | 0.737384 | 6_4:+5329323 | Msa0973000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTCTTTGATTAAT+AGG | + | chr6_4:5328809-5328828 | Msa0973000:intron | 10.0% |
| !! | TTAACATAATTTATAATAAC+AGG | + | chr6_4:5329188-5329207 | Msa0973000:intron | 10.0% |
| !! | AAATTAATTCTTTGATTAAT+AGG | + | chr6_4:5328809-5328828 | Msa0973000:intron | 10.0% |
| !! | TTAACATAATTTATAATAAC+AGG | + | chr6_4:5329188-5329207 | Msa0973000:intron | 10.0% |
| !! | AATATTCAAAATTGAAACTA+TGG | + | chr6_4:5328365-5328384 | Msa0973000:exon | 15.0% |
| !! | TGTATTATAATCAAATATGT+TGG | + | chr6_4:5328902-5328921 | Msa0973000:intron | 15.0% |
| !! | AATATTCAAAATTGAAACTA+TGG | + | chr6_4:5328365-5328384 | Msa0973000:exon | 15.0% |
| !! | TGTATTATAATCAAATATGT+TGG | + | chr6_4:5328902-5328921 | Msa0973000:intron | 15.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | - | chr6_4:5328984-5329003 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | - | chr6_4:5328984-5329003 | None:intergenic | 20.0% |
| ! | CAGGCAAATATAAAACTAAT+CGG | - | chr6_4:5328527-5328546 | None:intergenic | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | + | chr6_4:5328907-5328926 | Msa0973000:intron | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | + | chr6_4:5329162-5329181 | Msa0973000:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | + | chr6_4:5329200-5329219 | Msa0973000:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | + | chr6_4:5329674-5329693 | Msa0973000:exon | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | + | chr6_4:5329692-5329711 | Msa0973000:three_prime_UTR | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | + | chr6_4:5329693-5329712 | Msa0973000:three_prime_UTR | 25.0% |
| ! | CAGGCAAATATAAAACTAAT+CGG | - | chr6_4:5328527-5328546 | None:intergenic | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | + | chr6_4:5328907-5328926 | Msa0973000:intron | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | + | chr6_4:5329162-5329181 | Msa0973000:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | + | chr6_4:5329200-5329219 | Msa0973000:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | + | chr6_4:5329674-5329693 | Msa0973000:exon | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | + | chr6_4:5329692-5329711 | Msa0973000:three_prime_UTR | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | + | chr6_4:5329693-5329712 | Msa0973000:three_prime_UTR | 25.0% |
| AAAATTGAAACTATGGCATC+AGG | + | chr6_4:5328372-5328391 | Msa0973000:exon | 30.0% | |
| AACCTAATCAAGAATTGTTC+AGG | - | chr6_4:5328546-5328565 | None:intergenic | 30.0% | |
| ! | TTTCTATTTCTTGCAATCTG+AGG | + | chr6_4:5328605-5328624 | Msa0973000:intron | 30.0% |
| ! | TTCTATTTCTTGCAATCTGA+GGG | + | chr6_4:5328606-5328625 | Msa0973000:intron | 30.0% |
| CTCATTGAAATTGACATAGA+GGG | - | chr6_4:5328758-5328777 | None:intergenic | 30.0% | |
| TTCAAATGTGTCAAATCATG+TGG | + | chr6_4:5329028-5329047 | Msa0973000:intron | 30.0% | |
| TCAGGTGATTAATAAACTTC+AGG | + | chr6_4:5329057-5329076 | Msa0973000:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | + | chr6_4:5329351-5329370 | Msa0973000:CDS | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | + | chr6_4:5329352-5329371 | Msa0973000:CDS | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | + | chr6_4:5329559-5329578 | Msa0973000:CDS | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | + | chr6_4:5329566-5329585 | Msa0973000:CDS | 30.0% | |
| AATCAATAAGCCTTAACAGA+TGG | - | chr6_4:5329669-5329688 | None:intergenic | 30.0% | |
| AAAATTGAAACTATGGCATC+AGG | + | chr6_4:5328372-5328391 | Msa0973000:exon | 30.0% | |
| AACCTAATCAAGAATTGTTC+AGG | - | chr6_4:5328546-5328565 | None:intergenic | 30.0% | |
| ! | TTTCTATTTCTTGCAATCTG+AGG | + | chr6_4:5328605-5328624 | Msa0973000:intron | 30.0% |
| ! | TTCTATTTCTTGCAATCTGA+GGG | + | chr6_4:5328606-5328625 | Msa0973000:intron | 30.0% |
| CTCATTGAAATTGACATAGA+GGG | - | chr6_4:5328758-5328777 | None:intergenic | 30.0% | |
| TTCAAATGTGTCAAATCATG+TGG | + | chr6_4:5329028-5329047 | Msa0973000:intron | 30.0% | |
| TCAGGTGATTAATAAACTTC+AGG | + | chr6_4:5329057-5329076 | Msa0973000:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | + | chr6_4:5329351-5329370 | Msa0973000:CDS | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | + | chr6_4:5329352-5329371 | Msa0973000:CDS | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | + | chr6_4:5329559-5329578 | Msa0973000:CDS | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | + | chr6_4:5329566-5329585 | Msa0973000:CDS | 30.0% | |
| AATCAATAAGCCTTAACAGA+TGG | - | chr6_4:5329669-5329688 | None:intergenic | 30.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | + | chr6_4:5328399-5328418 | Msa0973000:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | - | chr6_4:5328414-5328433 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | - | chr6_4:5328452-5328471 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | + | chr6_4:5328459-5328478 | Msa0973000:CDS | 35.0% |
| TGCCTGAACAATTCTTGATT+AGG | + | chr6_4:5328541-5328560 | Msa0973000:intron | 35.0% | |
| TTAAGTGATGACAATCTGCA+TGG | + | chr6_4:5328668-5328687 | Msa0973000:intron | 35.0% | |
| TAAGTGATGACAATCTGCAT+GGG | + | chr6_4:5328669-5328688 | Msa0973000:intron | 35.0% | |
| GCTCATTGAAATTGACATAG+AGG | - | chr6_4:5328759-5328778 | None:intergenic | 35.0% | |
| CTATGTCAATTTCAATGAGC+TGG | + | chr6_4:5328759-5328778 | Msa0973000:intron | 35.0% | |
| ! | ATGTTGGTCTGGTCAAAATT+TGG | + | chr6_4:5328918-5328937 | Msa0973000:intron | 35.0% |
| TTGGTTTCTTCTTCTTGCTA+GGG | - | chr6_4:5329386-5329405 | None:intergenic | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | + | chr6_4:5329458-5329477 | Msa0973000:CDS | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | + | chr6_4:5329612-5329631 | Msa0973000:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | - | chr6_4:5329625-5329644 | None:intergenic | 35.0% |
| !! | TTAACAGATGGATTACTAGG+AGG | - | chr6_4:5329657-5329676 | None:intergenic | 35.0% |
| TCCTAGTAATCCATCTGTTA+AGG | + | chr6_4:5329656-5329675 | Msa0973000:CDS | 35.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | + | chr6_4:5328399-5328418 | Msa0973000:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | - | chr6_4:5328414-5328433 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | - | chr6_4:5328452-5328471 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | + | chr6_4:5328459-5328478 | Msa0973000:CDS | 35.0% |
| TGCCTGAACAATTCTTGATT+AGG | + | chr6_4:5328541-5328560 | Msa0973000:intron | 35.0% | |
| TTAAGTGATGACAATCTGCA+TGG | + | chr6_4:5328668-5328687 | Msa0973000:intron | 35.0% | |
| TAAGTGATGACAATCTGCAT+GGG | + | chr6_4:5328669-5328688 | Msa0973000:intron | 35.0% | |
| GCTCATTGAAATTGACATAG+AGG | - | chr6_4:5328759-5328778 | None:intergenic | 35.0% | |
| CTATGTCAATTTCAATGAGC+TGG | + | chr6_4:5328759-5328778 | Msa0973000:intron | 35.0% | |
| ! | ATGTTGGTCTGGTCAAAATT+TGG | + | chr6_4:5328918-5328937 | Msa0973000:intron | 35.0% |
| TTGGTTTCTTCTTCTTGCTA+GGG | - | chr6_4:5329386-5329405 | None:intergenic | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | + | chr6_4:5329458-5329477 | Msa0973000:CDS | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | + | chr6_4:5329612-5329631 | Msa0973000:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | - | chr6_4:5329625-5329644 | None:intergenic | 35.0% |
| !! | TTAACAGATGGATTACTAGG+AGG | - | chr6_4:5329657-5329676 | None:intergenic | 35.0% |
| TCCTAGTAATCCATCTGTTA+AGG | + | chr6_4:5329656-5329675 | Msa0973000:CDS | 35.0% | |
| ATTGAAACTATGGCATCAGG+TGG | + | chr6_4:5328375-5328394 | Msa0973000:exon | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | - | chr6_4:5328464-5328483 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | - | chr6_4:5328468-5328487 | None:intergenic | 40.0% | |
| CAAATCATGTGGTTGAGTTC+AGG | + | chr6_4:5329039-5329058 | Msa0973000:intron | 40.0% | |
| CGATTGAAAACACCTGAGTT+CGG | + | chr6_4:5329091-5329110 | Msa0973000:intron | 40.0% | |
| ! | CCAAAGTTTGTTCGAGTCAA+AGG | - | chr6_4:5329117-5329136 | None:intergenic | 40.0% |
| ! | CCTTTGACTCGAACAAACTT+TGG | + | chr6_4:5329114-5329133 | Msa0973000:intron | 40.0% |
| CGGACATTCATGTGACTTAT+AGG | - | chr6_4:5329235-5329254 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | - | chr6_4:5329266-5329285 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | + | chr6_4:5329290-5329309 | Msa0973000:CDS | 40.0% | |
| ! | GTTGGTTTCTTCTTCTTGCT+AGG | - | chr6_4:5329387-5329406 | None:intergenic | 40.0% |
| AAGCATGATCAGCAGCAAAA+CGG | - | chr6_4:5329497-5329516 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | + | chr6_4:5329575-5329594 | Msa0973000:CDS | 40.0% |
| !! | GCCTTAACAGATGGATTACT+AGG | - | chr6_4:5329660-5329679 | None:intergenic | 40.0% |
| ATTGAAACTATGGCATCAGG+TGG | + | chr6_4:5328375-5328394 | Msa0973000:exon | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | - | chr6_4:5328464-5328483 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | - | chr6_4:5328468-5328487 | None:intergenic | 40.0% | |
| CAAATCATGTGGTTGAGTTC+AGG | + | chr6_4:5329039-5329058 | Msa0973000:intron | 40.0% | |
| CGATTGAAAACACCTGAGTT+CGG | + | chr6_4:5329091-5329110 | Msa0973000:intron | 40.0% | |
| ! | CCAAAGTTTGTTCGAGTCAA+AGG | - | chr6_4:5329117-5329136 | None:intergenic | 40.0% |
| ! | CCTTTGACTCGAACAAACTT+TGG | + | chr6_4:5329114-5329133 | Msa0973000:intron | 40.0% |
| CGGACATTCATGTGACTTAT+AGG | - | chr6_4:5329235-5329254 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | - | chr6_4:5329266-5329285 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | + | chr6_4:5329290-5329309 | Msa0973000:CDS | 40.0% | |
| ! | GTTGGTTTCTTCTTCTTGCT+AGG | - | chr6_4:5329387-5329406 | None:intergenic | 40.0% |
| AAGCATGATCAGCAGCAAAA+CGG | - | chr6_4:5329497-5329516 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | + | chr6_4:5329575-5329594 | Msa0973000:CDS | 40.0% |
| !! | GCCTTAACAGATGGATTACT+AGG | - | chr6_4:5329660-5329679 | None:intergenic | 40.0% |
| TACATGTGATGGCTGCAAAC+AGG | + | chr6_4:5328470-5328489 | Msa0973000:CDS | 45.0% | |
| GTGTACTCCTCTCAATACCT+CGG | + | chr6_4:5328724-5328743 | Msa0973000:intron | 45.0% | |
| TGTACTCCTCTCAATACCTC+GGG | + | chr6_4:5328725-5328744 | Msa0973000:intron | 45.0% | |
| !! | ATTGAACCCGAGGTATTGAG+AGG | - | chr6_4:5328734-5328753 | None:intergenic | 45.0% |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | - | chr6_4:5329261-5329280 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | + | chr6_4:5329300-5329319 | Msa0973000:CDS | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | + | chr6_4:5329308-5329327 | Msa0973000:CDS | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | + | chr6_4:5329309-5329328 | Msa0973000:CDS | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | + | chr6_4:5329323-5329342 | Msa0973000:CDS | 45.0% | |
| AATCTCCTTGCAACGCTTCA+CGG | - | chr6_4:5329415-5329434 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | + | chr6_4:5329504-5329523 | Msa0973000:CDS | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | - | chr6_4:5329541-5329560 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | + | chr6_4:5329547-5329566 | Msa0973000:CDS | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | + | chr6_4:5329588-5329607 | Msa0973000:CDS | 45.0% |
| TGGATTACTAGGAGGAGAAG+TGG | - | chr6_4:5329649-5329668 | None:intergenic | 45.0% | |
| TACATGTGATGGCTGCAAAC+AGG | + | chr6_4:5328470-5328489 | Msa0973000:CDS | 45.0% | |
| GTGTACTCCTCTCAATACCT+CGG | + | chr6_4:5328724-5328743 | Msa0973000:intron | 45.0% | |
| TGTACTCCTCTCAATACCTC+GGG | + | chr6_4:5328725-5328744 | Msa0973000:intron | 45.0% | |
| !! | ATTGAACCCGAGGTATTGAG+AGG | - | chr6_4:5328734-5328753 | None:intergenic | 45.0% |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | - | chr6_4:5329261-5329280 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | + | chr6_4:5329300-5329319 | Msa0973000:CDS | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | + | chr6_4:5329308-5329327 | Msa0973000:CDS | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | + | chr6_4:5329309-5329328 | Msa0973000:CDS | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | + | chr6_4:5329323-5329342 | Msa0973000:CDS | 45.0% | |
| AATCTCCTTGCAACGCTTCA+CGG | - | chr6_4:5329415-5329434 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | + | chr6_4:5329504-5329523 | Msa0973000:CDS | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | - | chr6_4:5329541-5329560 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | + | chr6_4:5329547-5329566 | Msa0973000:CDS | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | + | chr6_4:5329588-5329607 | Msa0973000:CDS | 45.0% |
| TGGATTACTAGGAGGAGAAG+TGG | - | chr6_4:5329649-5329668 | None:intergenic | 45.0% | |
| !!! | ATATATATTTTTCATTTTAA+TGG | - | chr6_4:5328992-5329011 | None:intergenic | 5.0% |
| !!! | ATATATATTTTTCATTTTAA+TGG | - | chr6_4:5328992-5329011 | None:intergenic | 5.0% |
| GCTGGTGACAATCAACATGC+TGG | - | chr6_4:5328434-5328453 | None:intergenic | 50.0% | |
| ! | ATCTGCATGGGTTGACCTGA+TGG | + | chr6_4:5328681-5328700 | Msa0973000:intron | 50.0% |
| ! | ATGGGTTGACCTGATGGTGT+TGG | + | chr6_4:5328687-5328706 | Msa0973000:intron | 50.0% |
| !! | TGACCTGATGGTGTTGGCTT+CGG | + | chr6_4:5328693-5328712 | Msa0973000:intron | 50.0% |
| CATAGAGGGAATTGAACCCG+AGG | - | chr6_4:5328744-5328763 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | - | chr6_4:5329255-5329274 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | - | chr6_4:5329304-5329323 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | - | chr6_4:5329414-5329433 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | - | chr6_4:5329473-5329492 | None:intergenic | 50.0% | |
| GCTGGTGACAATCAACATGC+TGG | - | chr6_4:5328434-5328453 | None:intergenic | 50.0% | |
| ! | ATCTGCATGGGTTGACCTGA+TGG | + | chr6_4:5328681-5328700 | Msa0973000:intron | 50.0% |
| ! | ATGGGTTGACCTGATGGTGT+TGG | + | chr6_4:5328687-5328706 | Msa0973000:intron | 50.0% |
| !! | TGACCTGATGGTGTTGGCTT+CGG | + | chr6_4:5328693-5328712 | Msa0973000:intron | 50.0% |
| CATAGAGGGAATTGAACCCG+AGG | - | chr6_4:5328744-5328763 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | - | chr6_4:5329255-5329274 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | - | chr6_4:5329304-5329323 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | - | chr6_4:5329414-5329433 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | - | chr6_4:5329473-5329492 | None:intergenic | 50.0% | |
| GATCCGAAGCCAACACCATC+AGG | - | chr6_4:5328699-5328718 | None:intergenic | 55.0% | |
| TCGAGTCAAAGGCCGAACTC+AGG | - | chr6_4:5329106-5329125 | None:intergenic | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | - | chr6_4:5329413-5329432 | None:intergenic | 55.0% | |
| CAGCAGCAAAACGGTGCTTG+AGG | - | chr6_4:5329488-5329507 | None:intergenic | 55.0% | |
| GATCCGAAGCCAACACCATC+AGG | - | chr6_4:5328699-5328718 | None:intergenic | 55.0% | |
| TCGAGTCAAAGGCCGAACTC+AGG | - | chr6_4:5329106-5329125 | None:intergenic | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | - | chr6_4:5329413-5329432 | None:intergenic | 55.0% | |
| CAGCAGCAAAACGGTGCTTG+AGG | - | chr6_4:5329488-5329507 | None:intergenic | 55.0% | |
| TGCACGCGCGCAAAAACTCG+AGG | + | chr6_4:5328832-5328851 | Msa0973000:intron | 60.0% | |
| CAACGCTTCACGGGGCAAGT+TGG | - | chr6_4:5329405-5329424 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | + | chr6_4:5329407-5329426 | Msa0973000:CDS | 60.0% |
| TGCACGCGCGCAAAAACTCG+AGG | + | chr6_4:5328832-5328851 | Msa0973000:intron | 60.0% | |
| CAACGCTTCACGGGGCAAGT+TGG | - | chr6_4:5329405-5329424 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | + | chr6_4:5329407-5329426 | Msa0973000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 5328318 | 5329762 | 5328318 | ID=Msa0973000;Name=Msa0973000 |
| chr6_4 | mRNA | 5328318 | 5329762 | 5328318 | ID=Msa0973000-mRNA-1;Parent=Msa0973000;Name=Msa0973000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=66|1|1|1|1|1|2|76|194 |
| chr6_4 | exon | 5328318 | 5328491 | 5328318 | ID=Msa0973000-mRNA-1:exon:2271;Parent=Msa0973000-mRNA-1 |
| chr6_4 | exon | 5329210 | 5329762 | 5329210 | ID=Msa0973000-mRNA-1:exon:2272;Parent=Msa0973000-mRNA-1 |
| chr6_4 | five_prime_UTR | 5328318 | 5328383 | 5328318 | ID=Msa0973000-mRNA-1:five_prime_utr;Parent=Msa0973000-mRNA-1 |
| chr6_4 | CDS | 5328384 | 5328491 | 5328384 | ID=Msa0973000-mRNA-1:cds;Parent=Msa0973000-mRNA-1 |
| chr6_4 | CDS | 5329210 | 5329686 | 5329210 | ID=Msa0973000-mRNA-1:cds;Parent=Msa0973000-mRNA-1 |
| chr6_4 | three_prime_UTR | 5329687 | 5329762 | 5329687 | ID=Msa0973000-mRNA-1:three_prime_utr;Parent=Msa0973000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
