AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132310 MtrunA17_Chr5g0395041 99.083 436 4 0 1 436 1 436 0.0 898
Msa1132310 MtrunA17_Chr3g0127861 43.256 430 224 8 12 434 1 417 2.71e-120 357
Msa1132310 MtrunA17_Chr1g0189151 43.230 421 198 8 17 435 9 390 2.40e-117 348
Msa1132310 MtrunA17_Chr4g0000091 29.018 224 150 4 126 347 62 278 8.09e-32 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132310 AT4G14500.1 66.591 440 136 6 1 436 1 433 0.0 598
Msa1132310 AT3G23080.1 65.197 431 131 6 9 436 5 419 0.0 561
Msa1132310 AT3G23080.2 64.604 404 124 6 36 436 1 388 0.0 515
Msa1132310 AT3G23080.3 64.604 404 124 6 36 436 1 388 0.0 515
Msa1132310 AT5G54170.1 45.561 428 212 6 23 434 6 428 4.69e-121 360
Msa1132310 AT1G64720.1 44.096 415 181 6 21 435 17 380 5.40e-121 357
Msa1132310 AT4G14500.2 61.290 279 101 4 1 274 1 277 3.43e-117 344
Msa1132310 AT3G13062.1 29.934 304 189 9 136 431 84 371 5.89e-36 137
Msa1132310 AT3G13062.2 31.250 304 185 10 136 431 84 371 1.13e-35 137
Msa1132310 AT3G13062.3 29.167 312 189 9 136 431 84 379 1.40e-34 133
Msa1132310 AT1G55960.1 31.727 249 156 6 128 369 75 316 2.63e-30 121
Msa1132310 AT1G55960.2 28.829 222 121 6 128 344 75 264 1.64e-18 87.4

Find 151 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTTTGTATTGCATATT+TGG 0.148571 7_3:-85184194 None:intergenic
TGGGACTGTTGCTGTGGTTT+TGG 0.168770 7_3:+85185710 Msa1132310:CDS
CCTAACTTTGCAACATCTTT+TGG 0.178743 7_3:-85185441 None:intergenic
AATGACCGACTCAGACTTTC+AGG 0.179580 7_3:-85186070 None:intergenic
AGTTAGTGAGGGATTTCTTC+TGG 0.188486 7_3:+85184560 Msa1132310:CDS
ATCTTCCGAATGTTGATTAA+TGG 0.204041 7_3:-85185830 None:intergenic
TTTGATTTGAATTTCAATTA+TGG 0.231058 7_3:+85182033 Msa1132310:exon
TTCCCGATCACTGCAGAAAA+AGG 0.234946 7_3:-85184764 None:intergenic
ATATTGTACAACTCTGTTAA+AGG 0.261407 7_3:-85186037 None:intergenic
AATTGTTCACTGGATTAAAA+AGG 0.263893 7_3:+85184663 Msa1132310:CDS
CCAAAAGATGTTGCAAAGTT+AGG 0.281442 7_3:+85185441 Msa1132310:CDS
CATTTCGGATTAATTATATA+AGG 0.287861 7_3:+85181725 Msa1132310:five_prime_UTR
GGAGCAAGTTTCGTTTCTTA+TGG 0.297226 7_3:+85182224 Msa1132310:CDS
GGATTATTTATTCGATGTTA+TGG 0.311579 7_3:+85182057 Msa1132310:CDS
ATACATTAGGTCCGGTGATA+TGG 0.313982 7_3:+85184058 Msa1132310:intron
GCATTCGATAGTGATAAATA+TGG 0.315144 7_3:-85185874 None:intergenic
ACAACCAGGCTTTCTTCTAA+TGG 0.315169 7_3:+85185579 Msa1132310:CDS
TACAGTTACAGAGGCTGATT+TGG 0.318868 7_3:+85184100 Msa1132310:CDS
AATTAAGATTTGTTATAGTT+TGG 0.320035 7_3:-85181765 None:intergenic
TGCTATGTGCGGTTCCGATT+TGG 0.329919 7_3:+85182125 Msa1132310:CDS
TCTCTATTTGTCGCAGATAT+TGG 0.336013 7_3:+85182308 Msa1132310:CDS
TGGAAACTTGCATTCGTTAG+AGG 0.346382 7_3:+85185599 Msa1132310:CDS
AAAGTAGAGGTCTACGCGTC+TGG 0.348134 7_3:-85185229 None:intergenic
ACAACTGTATACTTACATTT+CGG 0.350572 7_3:+85181710 None:intergenic
CATCTTCTTCATCTTCTTGA+AGG 0.364952 7_3:+85184125 Msa1132310:CDS
GATTGGAAGTGGGTGGCCTT+AGG 0.367105 7_3:+85185687 Msa1132310:CDS
CGAGCATTGTTGTTGGGAGC+AGG 0.370322 7_3:+85185756 Msa1132310:CDS
GTTAGTGAGGGATTTCTTCT+GGG 0.373539 7_3:+85184561 Msa1132310:CDS
ATATTATTGCTCGAAGGATT+TGG 0.373822 7_3:+85184788 Msa1132310:CDS
GAACGTTGACATTAAATAAC+AGG 0.381414 7_3:-85186131 None:intergenic
TGGACGGTTCCGCCGGGATT+CGG 0.387516 7_3:+85182244 Msa1132310:CDS
TTGGAGGAATGCCCTCATAA+TGG 0.394374 7_3:+85184634 Msa1132310:CDS
AATCTGTCGGGCATTGTTGA+TGG 0.394962 7_3:-85185652 None:intergenic
GTTAGAGGATGCGTCTTTGA+TGG 0.400725 7_3:+85185614 Msa1132310:CDS
TTTGTCGAGATGTGCGTTGA+TGG 0.403304 7_3:+85185548 Msa1132310:CDS
GATTCGGTGCTCGCCGTCTC+TGG 0.407752 7_3:+85182260 Msa1132310:CDS
ACGCTACCAAACACGCTTCT+CGG 0.411331 7_3:+85182398 Msa1132310:CDS
AATGCGCGATGAATCAATAA+AGG 0.413987 7_3:-85185942 None:intergenic
GACTTCTCTTCATCGGTCTT+CGG 0.414196 7_3:+85182203 Msa1132310:CDS
GGCGTCATCAGAACACGAAT+TGG 0.416015 7_3:-85182371 None:intergenic
TGCGAGCATAGGATCCCATT+TGG 0.417922 7_3:-85184599 None:intergenic
CCATGTCTTCGTGATGCAAA+AGG 0.428688 7_3:-85185413 None:intergenic
TTTCTTATGGACGGTTCCGC+CGG 0.430105 7_3:+85182237 Msa1132310:CDS
TGGAGGAATGCCCTCATAAT+GGG 0.431673 7_3:+85184635 Msa1132310:CDS
GTAGGGCGAGCATTGTTGTT+GGG 0.436511 7_3:+85185750 Msa1132310:CDS
ACAATTGATGTCCCATTATG+AGG 0.437523 7_3:-85184646 None:intergenic
CATCTTCTTGAAGGGAAAGA+TGG 0.441427 7_3:+85184134 Msa1132310:CDS
ATCATGACCGCAAGCCAAAT+CGG 0.444905 7_3:-85182139 None:intergenic
GAATTACCGAGAAGCGTGTT+TGG 0.447476 7_3:-85182404 None:intergenic
AGGCCACCCACTTCCAATCC+AGG 0.453527 7_3:-85185683 None:intergenic
TATGAAGAAACCTTCAATAA+CGG 0.462966 7_3:+85182084 Msa1132310:CDS
TGGAAGTGGGTGGCCTTAGG+TGG 0.465831 7_3:+85185690 Msa1132310:CDS
AGATTGGTCACGGCCTGGAT+TGG 0.468477 7_3:+85185670 Msa1132310:CDS
TCATCCAACGCAACATAGAA+AGG 0.470619 7_3:-85181873 None:intergenic
ATGTTCCATTAATCAACATT+CGG 0.473896 7_3:+85185825 Msa1132310:three_prime_UTR
ATTTGGCTTGCGGTCATGAT+CGG 0.474486 7_3:+85182142 Msa1132310:CDS
GTCACGGCCTGGATTGGAAG+TGG 0.475906 7_3:+85185676 Msa1132310:CDS
ACGAATGTTTCCGTTATTGA+AGG 0.481101 7_3:-85182094 None:intergenic
GTGGAATCTCGCAAAGGAGA+TGG 0.484870 7_3:+85185366 Msa1132310:intron
ATCAACAATGCCCGACAGAT+TGG 0.485079 7_3:+85185654 Msa1132310:CDS
GTTTGGTGATCGGTTGGTCA+TGG 0.485828 7_3:+85182164 Msa1132310:CDS
TTCTATGTTGCGTTGGATGA+AGG 0.487083 7_3:+85181876 Msa1132310:five_prime_UTR
GATGGAAGAAGAAGGTGGAT+AGG 0.487443 7_3:+85181898 Msa1132310:five_prime_UTR
TGCACGGAGATGAGAGATCT+AGG 0.488954 7_3:+85185788 Msa1132310:exon
AGACGGCGAGCACCGAATCC+CGG 0.489608 7_3:-85182256 None:intergenic
GCGAGCATAGGATCCCATTT+GGG 0.491899 7_3:-85184598 None:intergenic
GAGATCTAGGATCTATTCAA+TGG 0.495245 7_3:+85185801 Msa1132310:three_prime_UTR
TGACAGCTCCCCACATTCCA+TGG 0.497311 7_3:-85185470 None:intergenic
TGCGGTTCCGATTTGGCTTG+CGG 0.503029 7_3:+85182132 Msa1132310:CDS
GTCATGATCGGTTTGGTGAT+CGG 0.504723 7_3:+85182154 Msa1132310:CDS
AGTAGGGCGAGCATTGTTGT+TGG 0.504978 7_3:+85185749 Msa1132310:CDS
ATGGGACATCAATTGTTCAC+TGG 0.510323 7_3:+85184653 Msa1132310:CDS
CATTCGATAGTGATAAATAT+GGG 0.515889 7_3:-85185873 None:intergenic
TATTGCTCGAAGGATTTGGC+AGG 0.516863 7_3:+85184792 Msa1132310:CDS
GCTTGCGGTCATGATCGGTT+TGG 0.517226 7_3:+85182147 Msa1132310:CDS
CAAATATGCAATACAAAGCT+TGG 0.518060 7_3:+85184195 Msa1132310:CDS
CAAGTTTCGTTTCTTATGGA+CGG 0.518083 7_3:+85182228 Msa1132310:CDS
TCTAGTTGGGTAATCAAACC+TGG 0.518454 7_3:+85185252 Msa1132310:CDS
TGATCGGTTTGGTGATCGGT+TGG 0.518750 7_3:+85182158 Msa1132310:CDS
TTGGAGGGCGTAGAGAGAGG+GGG 0.519345 7_3:+85186007 Msa1132310:three_prime_UTR
GGAAGTGGGTGGCCTTAGGT+GGG 0.520331 7_3:+85185691 Msa1132310:CDS
GTTTCCATTAGAAGAAAGCC+TGG 0.520462 7_3:-85185583 None:intergenic
TAGGAGTTCGCCATGGAATG+TGG 0.521492 7_3:+85185460 Msa1132310:CDS
CGCACACTGCAAAGTGTTGG+AGG 0.521745 7_3:+85184618 Msa1132310:CDS
GAGCATTGTTGTTGGGAGCA+GGG 0.522764 7_3:+85185757 Msa1132310:CDS
ATCTTCTTCATCTTCTTGAA+GGG 0.522948 7_3:+85184126 Msa1132310:CDS
GATTTGAATTTCAATTATGG+AGG 0.524637 7_3:+85182036 Msa1132310:exon
GGAAAGATGGAGAGATTGAC+TGG 0.525971 7_3:+85184147 Msa1132310:CDS
CATCCAACGCAACATAGAAA+GGG 0.527024 7_3:-85181872 None:intergenic
TGGAATCTCGCAAAGGAGAT+GGG 0.527938 7_3:+85185367 Msa1132310:CDS
TCATGGCGTCCACGGTGGAC+CGG 0.529717 7_3:+85182181 Msa1132310:CDS
ATCCCCTTTCTATGTTGCGT+TGG 0.535186 7_3:+85181869 Msa1132310:five_prime_UTR
CATGTCTTCGTGATGCAAAA+GGG 0.535250 7_3:-85185412 None:intergenic
TGAGAGCATACCAGAATGCT+AGG 0.537126 7_3:+85185511 Msa1132310:CDS
GGTATACACAGTGGTGCAGT+AGG 0.538233 7_3:+85185732 Msa1132310:CDS
CCGACAGATTGGTCACGGCC+TGG 0.540884 7_3:+85185665 Msa1132310:CDS
GCTCGAAGGATTTGGCAGGC+TGG 0.543160 7_3:+85184796 Msa1132310:CDS
TCGGTTGGTCATGGCGTCCA+CGG 0.546920 7_3:+85182173 Msa1132310:CDS
AAGTAGAGGTCTACGCGTCT+GGG 0.548459 7_3:-85185228 None:intergenic
CTTAGGTGGGACTGTTGCTG+TGG 0.550839 7_3:+85185704 Msa1132310:CDS
TCACGGCCTGGATTGGAAGT+GGG 0.553226 7_3:+85185677 Msa1132310:CDS
GCTCGCACACTGCAAAGTGT+TGG 0.555461 7_3:+85184615 Msa1132310:CDS
AAGAAATCCCTCACTAACTC+AGG 0.556254 7_3:-85184556 None:intergenic
ACTTTGCAGTGTGCGAGCAT+AGG 0.560803 7_3:-85184610 None:intergenic
TCAGAACACGAATTGGAAGA+AGG 0.560879 7_3:-85182364 None:intergenic
AGGAGTTCGCCATGGAATGT+GGG 0.565387 7_3:+85185461 Msa1132310:CDS
CCAGGCCGTGACCAATCTGT+CGG 0.568274 7_3:-85185665 None:intergenic
ATGACCGACTCAGACTTTCA+GGG 0.570135 7_3:-85186069 None:intergenic
AGCGTGTTTGGTAGCGTCGG+TGG 0.579757 7_3:-85182392 None:intergenic
TGAAGGATGGAAGAAGAAGG+TGG 0.582655 7_3:+85181893 Msa1132310:five_prime_UTR
CACAGCAACAGTCCCACCTA+AGG 0.583165 7_3:-85185703 None:intergenic
CAATTGATGTCCCATTATGA+GGG 0.583701 7_3:-85184645 None:intergenic
GATATACGGGGACACGTGGT+GGG 0.583920 7_3:-85181825 None:intergenic
GGATGAAGGATGGAAGAAGA+AGG 0.585871 7_3:+85181890 Msa1132310:five_prime_UTR
TGCGTCTTTGATGGAAGAGA+GGG 0.591648 7_3:+85185623 Msa1132310:CDS
ATGCAACTCCTGAGTTAGTG+AGG 0.591962 7_3:+85184548 Msa1132310:CDS
TTTGGAGGGCGTAGAGAGAG+GGG 0.595858 7_3:+85186006 Msa1132310:three_prime_UTR
CTTCAAATACAGTTCTACTA+CGG 0.596069 7_3:-85184525 None:intergenic
TGGGCAGTTGTCTGCATGCG+AGG 0.601567 7_3:+85185386 Msa1132310:CDS
ATGTTGCGTTGGATGAAGGA+TGG 0.603610 7_3:+85181880 Msa1132310:five_prime_UTR
CGGCCTGGATTGGAAGTGGG+TGG 0.605735 7_3:+85185680 Msa1132310:CDS
AAGACCGATGAAGAGAAGTC+CGG 0.606267 7_3:-85182200 None:intergenic
CGGTGAACGCTAACCAGAGA+CGG 0.606502 7_3:-85182273 None:intergenic
ATGCGTCTTTGATGGAAGAG+AGG 0.608772 7_3:+85185622 Msa1132310:CDS
CAGTGATATACGGGGACACG+TGG 0.609051 7_3:-85181829 None:intergenic
TGGGATATTTACCGTTGATG+TGG 0.610794 7_3:-85181806 None:intergenic
TGCATACTACTGTGTGACAA+AGG 0.612553 7_3:+85184822 Msa1132310:CDS
AATAGAGAAAGCAGAAAGAG+CGG 0.618635 7_3:-85182293 None:intergenic
GGGAATATATTATTGCTCGA+AGG 0.619326 7_3:+85184782 Msa1132310:CDS
AATTAATCTAACCACATCAA+CGG 0.621572 7_3:+85181795 Msa1132310:five_prime_UTR
TGGACCGGACTTCTCTTCAT+CGG 0.622743 7_3:+85182196 Msa1132310:CDS
TCTCTCGTCAGCCATATCAC+CGG 0.623742 7_3:-85184069 None:intergenic
TGCAACTCCTGAGTTAGTGA+GGG 0.625852 7_3:+85184549 Msa1132310:CDS
TGACCCCTGAAAGTCTGAGT+CGG 0.629319 7_3:+85186065 Msa1132310:three_prime_UTR
GAGCAGGGCATAGATTTGCA+CGG 0.635579 7_3:+85185772 Msa1132310:CDS
AGAAGCGTGTTTGGTAGCGT+CGG 0.637843 7_3:-85182395 None:intergenic
AGACAAGGATACAGTTACAG+AGG 0.641279 7_3:+85184091 Msa1132310:CDS
TTACCCAACTAGAAAAGTAG+AGG 0.644640 7_3:-85185242 None:intergenic
GCTGTCAAGAAATTGCACTC+TGG 0.647856 7_3:+85185486 Msa1132310:CDS
AATGCCCGACAGATTGGTCA+CGG 0.651595 7_3:+85185660 Msa1132310:CDS
ATCCAACGCAACATAGAAAG+GGG 0.653159 7_3:-85181871 None:intergenic
GGAGTTCGCCATGGAATGTG+GGG 0.655861 7_3:+85185462 Msa1132310:CDS
TGACCGACTCAGACTTTCAG+GGG 0.667315 7_3:-85186068 None:intergenic
TGATGGCAAGTAAAACAACC+AGG 0.673260 7_3:+85185565 Msa1132310:CDS
AGCTTGGCGTTATGACTCTG+AGG 0.673296 7_3:+85184211 Msa1132310:CDS
TATGGCTGACGAGAGAGACA+AGG 0.679529 7_3:+85184076 Msa1132310:CDS
GTATACACAGTGGTGCAGTA+GGG 0.686841 7_3:+85185733 Msa1132310:CDS
GCAAAGTTAGGAGTTCGCCA+TGG 0.689467 7_3:+85185453 Msa1132310:CDS
GTTGGTCATGGCGTCCACGG+TGG 0.693217 7_3:+85182176 Msa1132310:CDS
GATGCAGTGGAATCTCGCAA+AGG 0.695128 7_3:+85185360 Msa1132310:intron
AAGAGAAGTCCGGTCCACCG+TGG 0.715281 7_3:-85182190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTGAAATTTATC+TGG + chr7_3:85182471-85182490 Msa1132310:intron 10.0%
!!! AATTAAGATTTGTTATAGTT+TGG - chr7_3:85181768-85181787 None:intergenic 15.0%
!!! TTTGATTTGAATTTCAATTA+TGG + chr7_3:85182033-85182052 Msa1132310:exon 15.0%
!! TGAAATATATATAATGTATC+AGG + chr7_3:85182507-85182526 Msa1132310:intron 15.0%
!!! TAGACTATATATAATTTTGT+TGG + chr7_3:85182970-85182989 Msa1132310:intron 15.0%
!!! AGACTATATATAATTTTGTT+GGG + chr7_3:85182971-85182990 Msa1132310:intron 15.0%
!! TACAACATTAACTATTTATT+TGG - chr7_3:85184697-85184716 None:intergenic 15.0%
!! AAAAAGAAATATAAGAAACA+GGG - chr7_3:85185059-85185078 None:intergenic 15.0%
!! CATTTCGGATTAATTATATA+AGG + chr7_3:85181725-85181744 Msa1132310:five_prime_UTR 20.0%
!! TTGGTCTAATTTCAAAAATA+AGG + chr7_3:85182327-85182346 Msa1132310:CDS 20.0%
!!! GTAATTCACTACATTATTTT+TGG + chr7_3:85182420-85182439 Msa1132310:intron 20.0%
!!! TATACTTTTTCAGCATTTTT+AGG + chr7_3:85182566-85182585 Msa1132310:intron 20.0%
!! ACTTATAGTAGTAGAAAATA+TGG + chr7_3:85182670-85182689 Msa1132310:intron 20.0%
!!! GATTTTTATTGTTGTTGTTA+AGG + chr7_3:85182911-85182930 Msa1132310:intron 20.0%
!!! TATATAATTTTGTTGGGTTA+AGG + chr7_3:85182977-85182996 Msa1132310:intron 20.0%
!! AGTATTATAACAACATAGAT+TGG - chr7_3:85183592-85183611 None:intergenic 20.0%
!!! TTTGTTATGATTTTTCTACT+TGG + chr7_3:85183779-85183798 Msa1132310:intron 20.0%
!!! ATATTATACTGTATTTCTAG+CGG + chr7_3:85183992-85184011 Msa1132310:intron 20.0%
!! CAAAAAGAAATATAAGAAAC+AGG - chr7_3:85185060-85185079 None:intergenic 20.0%
!! AGGTTTATGAAAAATTAGAT+TGG - chr7_3:85185086-85185105 None:intergenic 20.0%
!! TATTTAATCTTCAATGTTGT+AGG + chr7_3:85185170-85185189 Msa1132310:intron 20.0%
!! ATTTAATCTTCAATGTTGTA+GGG + chr7_3:85185171-85185190 Msa1132310:intron 20.0%
!! TAGCATCAACTATTTAATAA+TGG + chr7_3:85185310-85185329 Msa1132310:intron 20.0%
! AATTAATCTAACCACATCAA+CGG + chr7_3:85181795-85181814 Msa1132310:five_prime_UTR 25.0%
!!! TTTGCTTTTTCAGTGATATA+CGG - chr7_3:85181842-85181861 None:intergenic 25.0%
! GATTTGAATTTCAATTATGG+AGG + chr7_3:85182036-85182055 Msa1132310:exon 25.0%
! GGATTATTTATTCGATGTTA+TGG + chr7_3:85182057-85182076 Msa1132310:CDS 25.0%
! TATGAAGAAACCTTCAATAA+CGG + chr7_3:85182084-85182103 Msa1132310:CDS 25.0%
!! TGGTTTCAATTCAAGTTATT+AGG + chr7_3:85182440-85182459 Msa1132310:intron 25.0%
!! GGTTTCAATTCAAGTTATTA+GGG + chr7_3:85182441-85182460 Msa1132310:intron 25.0%
!! TGGTTTTTGATATAACACTA+TGG + chr7_3:85182842-85182861 Msa1132310:intron 25.0%
!! TTTTTACTTAGCTACCTTTT+AGG + chr7_3:85183038-85183057 Msa1132310:intron 25.0%
! AAAACACTCTTTCAAAAATG+TGG - chr7_3:85183138-85183157 None:intergenic 25.0%
! TGATACAAAATACCCTAATT+TGG + chr7_3:85183496-85183515 Msa1132310:intron 25.0%
!!! ATGAAGCGTTTTATTCATTT+TGG + chr7_3:85184019-85184038 Msa1132310:intron 25.0%
!!! GTTTTATTCATTTTGGAACT+TGG + chr7_3:85184026-85184045 Msa1132310:intron 25.0%
!! TTTTACTTCCTAGTTTAAAG+TGG + chr7_3:85184351-85184370 Msa1132310:intron 25.0%
! ACATAAATCCACTTTAAACT+AGG - chr7_3:85184362-85184381 None:intergenic 25.0%
! AATTGTTCACTGGATTAAAA+AGG + chr7_3:85184663-85184682 Msa1132310:CDS 25.0%
! TTTAATCTTCAATGTTGTAG+GGG + chr7_3:85185172-85185191 Msa1132310:intron 25.0%
! ATGTTCCATTAATCAACATT+CGG + chr7_3:85185825-85185844 Msa1132310:three_prime_UTR 25.0%
! CATTCGATAGTGATAAATAT+GGG - chr7_3:85185876-85185895 None:intergenic 25.0%
! ATATTGTACAACTCTGTTAA+AGG - chr7_3:85186040-85186059 None:intergenic 25.0%
!!! TTGCTTTTTCAGTGATATAC+GGG - chr7_3:85181841-85181860 None:intergenic 30.0%
!! TTTTCAGCATTTTTAGGAAC+TGG + chr7_3:85182572-85182591 Msa1132310:intron 30.0%
ATATGGTACAAACTAGACTT+AGG + chr7_3:85182687-85182706 Msa1132310:intron 30.0%
AAGAGAGTAGATCAGATAAA+TGG + chr7_3:85182752-85182771 Msa1132310:intron 30.0%
AGGTAGAGAATCTATTAAGA+AGG + chr7_3:85182789-85182808 Msa1132310:intron 30.0%
! TAATGAGTTGGATAAAGACA+TGG + chr7_3:85182822-85182841 Msa1132310:intron 30.0%
!! AAGTTTTATCCCACTAAACA+GGG - chr7_3:85182891-85182910 None:intergenic 30.0%
! TATTGTTGTTGTTAAGGAAC+TGG + chr7_3:85182917-85182936 Msa1132310:intron 30.0%
!! ACTCTAAAACAAAGCCTAAA+AGG - chr7_3:85183055-85183074 None:intergenic 30.0%
!!! GCTTTGTTTTAGAGTTTGAA+GGG + chr7_3:85183060-85183079 Msa1132310:intron 30.0%
!!! CTTTGTTTTAGAGTTTGAAG+GGG + chr7_3:85183061-85183080 Msa1132310:intron 30.0%
AAGGAACTCAAACATTGTAT+TGG - chr7_3:85183225-85183244 None:intergenic 30.0%
! CTTTGTTTGCAAATTTGGAA+GGG - chr7_3:85183361-85183380 None:intergenic 30.0%
!! TAAGGCTTTGTTTGCAAATT+TGG - chr7_3:85183366-85183385 None:intergenic 30.0%
AAATTTGCAAACAAAGCCTT+AGG + chr7_3:85183365-85183384 Msa1132310:intron 30.0%
AATTTGCAAACAAAGCCTTA+GGG + chr7_3:85183366-85183385 Msa1132310:intron 30.0%
TACAAAATACCCTAATTTGG+AGG + chr7_3:85183499-85183518 Msa1132310:intron 30.0%
!!! TTTTGAGTTCCTCCAAATTA+GGG - chr7_3:85183511-85183530 None:intergenic 30.0%
!!! TTTTTGAGTTCCTCCAAATT+AGG - chr7_3:85183512-85183531 None:intergenic 30.0%
CTCAAAAATTGTATCACAAC+TGG + chr7_3:85183524-85183543 Msa1132310:intron 30.0%
! ATTGTATCACAACTGGATTT+TGG + chr7_3:85183531-85183550 Msa1132310:intron 30.0%
ATTAGACACACAGAAGAAAT+TGG - chr7_3:85183845-85183864 None:intergenic 30.0%
GAAGCTGATTGTCATATTTA+AGG - chr7_3:85183870-85183889 None:intergenic 30.0%
! AGCTTCTTTTTACTGTAACA+TGG + chr7_3:85183884-85183903 Msa1132310:intron 30.0%
AATTGATGTTCCTATGTAAG+TGG + chr7_3:85183939-85183958 Msa1132310:intron 30.0%
AATATATCAAACAACCATCC+AGG - chr7_3:85183977-85183996 None:intergenic 30.0%
TTGGTTATTGCACATACATT+AGG + chr7_3:85184045-85184064 Msa1132310:intron 30.0%
ATCTTCTTCATCTTCTTGAA+GGG + chr7_3:85184126-85184145 Msa1132310:CDS 30.0%
! CAAGCTTTGTATTGCATATT+TGG - chr7_3:85184197-85184216 None:intergenic 30.0%
CAAATATGCAATACAAAGCT+TGG + chr7_3:85184195-85184214 Msa1132310:CDS 30.0%
! TGTTCAATTTTCATCTTGTG+CGG + chr7_3:85184244-85184263 Msa1132310:intron 30.0%
TTGGATATCCTTTCTATTTG+AGG + chr7_3:85184325-85184344 Msa1132310:intron 30.0%
!! TAAAAGTGCCTCAAATAGAA+AGG - chr7_3:85184336-85184355 None:intergenic 30.0%
AATAAATCAGCATCTGATCT+TGG + chr7_3:85184473-85184492 Msa1132310:intron 30.0%
CTTCAAATACAGTTCTACTA+CGG - chr7_3:85184528-85184547 None:intergenic 30.0%
GTATTTAATGTACACTGACA+TGG + chr7_3:85184714-85184733 Msa1132310:intron 30.0%
ATATTATTGCTCGAAGGATT+TGG + chr7_3:85184788-85184807 Msa1132310:CDS 30.0%
AGAAAATCCTGTTAATCTGA+AGG + chr7_3:85184940-85184959 Msa1132310:intron 30.0%
GATTATACAGTGTAAACGTA+AGG + chr7_3:85185140-85185159 Msa1132310:intron 30.0%
TTAATCTTCAATGTTGTAGG+GGG + chr7_3:85185173-85185192 Msa1132310:intron 30.0%
AATCAAACCTGGTAAGAAAT+AGG + chr7_3:85185263-85185282 Msa1132310:intron 30.0%
! ATCTTCCGAATGTTGATTAA+TGG - chr7_3:85185833-85185852 None:intergenic 30.0%
GCATTCGATAGTGATAAATA+TGG - chr7_3:85185877-85185896 None:intergenic 30.0%
! ACTATCGAATGCTAATTTTG+CGG + chr7_3:85185885-85185904 Msa1132310:three_prime_UTR 30.0%
!!! TTGTGCATTTTAGAATGCAA+AGG + chr7_3:85185964-85185983 Msa1132310:three_prime_UTR 30.0%
! CTTTTGAATGTGTAATCTGT+TGG + chr7_3:85186098-85186117 Msa1132310:three_prime_UTR 30.0%
GAACGTTGACATTAAATAAC+AGG - chr7_3:85186134-85186153 None:intergenic 30.0%
!!! TGCTTTTTCAGTGATATACG+GGG - chr7_3:85181840-85181859 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG - chr7_3:85181967-85181986 None:intergenic 35.0%
ACGAATGTTTCCGTTATTGA+AGG - chr7_3:85182097-85182116 None:intergenic 35.0%
CAAGTTTCGTTTCTTATGGA+CGG + chr7_3:85182228-85182247 Msa1132310:CDS 35.0%
AATAGAGAAAGCAGAAAGAG+CGG - chr7_3:85182296-85182315 None:intergenic 35.0%
TCTCTATTTGTCGCAGATAT+TGG + chr7_3:85182308-85182327 Msa1132310:CDS 35.0%
! CAAAAATAAGGAGAAAGTGC+TGG + chr7_3:85182339-85182358 Msa1132310:CDS 35.0%
!! TGTCTAGTATTGACATGTGA+TGG + chr7_3:85182532-85182551 Msa1132310:intron 35.0%
TTAGGAACTGGTTATATGTG+TGG + chr7_3:85182584-85182603 Msa1132310:intron 35.0%
ATTAGAGAGATAGAGAGAGT+TGG + chr7_3:85182641-85182660 Msa1132310:intron 35.0%
TTAGAGAGATAGAGAGAGTT+GGG + chr7_3:85182642-85182661 Msa1132310:intron 35.0%
AAACTAGACTTAGGTGGTTT+GGG + chr7_3:85182696-85182715 Msa1132310:intron 35.0%
CTCTTTACTACAGAATCCAA+AGG - chr7_3:85182737-85182756 None:intergenic 35.0%
AAATGGAGTCAAATCACTAG+AGG + chr7_3:85182769-85182788 Msa1132310:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG + chr7_3:85182810-85182829 Msa1132310:intron 35.0%
!! CAAGTTTTATCCCACTAAAC+AGG - chr7_3:85182892-85182911 None:intergenic 35.0%
!!! GGCTTTGTTTTAGAGTTTGA+AGG + chr7_3:85183059-85183078 Msa1132310:intron 35.0%
! TGTTTGAGTTCCTTCAAAGT+AGG + chr7_3:85183231-85183250 Msa1132310:intron 35.0%
! GTTTGAGTTCCTTCAAAGTA+GGG + chr7_3:85183232-85183251 Msa1132310:intron 35.0%
! TTTGAGTTCCTTCAAAGTAG+GGG + chr7_3:85183233-85183252 Msa1132310:intron 35.0%
TTTGGAAAAAAGGAAGAAGC+AGG - chr7_3:85183323-85183342 None:intergenic 35.0%
TTTGCAAATTTGGAAGGGAA+GGG - chr7_3:85183356-85183375 None:intergenic 35.0%
!! GCTTTGTTTGCAAATTTGGA+AGG - chr7_3:85183362-85183381 None:intergenic 35.0%
TCTGTTTGAGAGTTTAGGAA+GGG + chr7_3:85183389-85183408 Msa1132310:intron 35.0%
! TATCACAACTGGATTTTGGA+GGG + chr7_3:85183535-85183554 Msa1132310:intron 35.0%
AGATCCTACACATAGAATCA+CGG - chr7_3:85183818-85183837 None:intergenic 35.0%
TATTGCACATACATTAGGTC+CGG + chr7_3:85184050-85184069 Msa1132310:intron 35.0%
CATCTTCTTCATCTTCTTGA+AGG + chr7_3:85184125-85184144 Msa1132310:CDS 35.0%
! GATTGACTGGCAAAGTTTTA+TGG + chr7_3:85184160-85184179 Msa1132310:CDS 35.0%
!! ACTGGCAAAGTTTTATGGAA+AGG + chr7_3:85184165-85184184 Msa1132310:CDS 35.0%
TTCCATATTTGACACCCAAA+AGG + chr7_3:85184394-85184413 Msa1132310:intron 35.0%
! GACTATGTAATGAGCCTTTT+GGG - chr7_3:85184411-85184430 None:intergenic 35.0%
! TGACTATGTAATGAGCCTTT+TGG - chr7_3:85184412-85184431 None:intergenic 35.0%
! ATGATGATTTTCGTCCCAAA+TGG + chr7_3:85184584-85184603 Msa1132310:CDS 35.0%
! TGATGATTTTCGTCCCAAAT+GGG + chr7_3:85184585-85184604 Msa1132310:CDS 35.0%
CAATTGATGTCCCATTATGA+GGG - chr7_3:85184648-85184667 None:intergenic 35.0%
ACAATTGATGTCCCATTATG+AGG - chr7_3:85184649-85184668 None:intergenic 35.0%
GGGAATATATTATTGCTCGA+AGG + chr7_3:85184782-85184801 Msa1132310:CDS 35.0%
TTATCTCGTTTCTTTCCCAA+TGG + chr7_3:85184889-85184908 Msa1132310:intron 35.0%
!! CTTTTCTAGTGACAGAAGAA+TGG - chr7_3:85184922-85184941 None:intergenic 35.0%
! TTTTCTGACAACACATACAC+AGG - chr7_3:85185106-85185125 None:intergenic 35.0%
!! TAGACCTCTACTTTTCTAGT+TGG + chr7_3:85185238-85185257 Msa1132310:CDS 35.0%
!!! AGACCTCTACTTTTCTAGTT+GGG + chr7_3:85185239-85185258 Msa1132310:CDS 35.0%
TTACCCAACTAGAAAAGTAG+AGG - chr7_3:85185245-85185264 None:intergenic 35.0%
! AACTTTGCCTATTTCTTACC+AGG - chr7_3:85185273-85185292 None:intergenic 35.0%
! CCTAACTTTGCAACATCTTT+TGG - chr7_3:85185444-85185463 None:intergenic 35.0%
CCAAAAGATGTTGCAAAGTT+AGG + chr7_3:85185441-85185460 Msa1132310:CDS 35.0%
! GAGATCTAGGATCTATTCAA+TGG + chr7_3:85185801-85185820 Msa1132310:three_prime_UTR 35.0%
AATGCGCGATGAATCAATAA+AGG - chr7_3:85185945-85185964 None:intergenic 35.0%
TGGGATATTTACCGTTGATG+TGG - chr7_3:85181809-85181828 None:intergenic 40.0%
ATCCAACGCAACATAGAAAG+GGG - chr7_3:85181874-85181893 None:intergenic 40.0%
CATCCAACGCAACATAGAAA+GGG - chr7_3:85181875-85181894 None:intergenic 40.0%
TCATCCAACGCAACATAGAA+AGG - chr7_3:85181876-85181895 None:intergenic 40.0%
TTCTATGTTGCGTTGGATGA+AGG + chr7_3:85181876-85181895 Msa1132310:five_prime_UTR 40.0%
!! GATGATGATGATGATGGACA+TGG - chr7_3:85181961-85181980 None:intergenic 40.0%
!! CGTCGATATTTTGCTATGTG+CGG + chr7_3:85182114-85182133 Msa1132310:CDS 40.0%
GGAGCAAGTTTCGTTTCTTA+TGG + chr7_3:85182224-85182243 Msa1132310:CDS 40.0%
TCAGAACACGAATTGGAAGA+AGG - chr7_3:85182367-85182386 None:intergenic 40.0%
TAGAGAGATAGAGAGAGTTG+GGG + chr7_3:85182643-85182662 Msa1132310:intron 40.0%
TGGTACAAACTAGACTTAGG+TGG + chr7_3:85182690-85182709 Msa1132310:intron 40.0%
CAAACTAGACTTAGGTGGTT+TGG + chr7_3:85182695-85182714 Msa1132310:intron 40.0%
GCATGTAGAGAGATAACCTT+TGG + chr7_3:85182718-85182737 Msa1132310:intron 40.0%
!!! TGTTTTAGAGTTTGAAGGGG+AGG + chr7_3:85183064-85183083 Msa1132310:intron 40.0%
!!! GTTTTAGAGTTTGAAGGGGA+GGG + chr7_3:85183065-85183084 Msa1132310:intron 40.0%
TTGAGTTCCTTCAAAGTAGG+GGG + chr7_3:85183234-85183253 Msa1132310:intron 40.0%
TCAAAATCCCCCTACTTTGA+AGG - chr7_3:85183244-85183263 None:intergenic 40.0%
GGAATAGAAGACTTCGGAAT+GGG - chr7_3:85183295-85183314 None:intergenic 40.0%
AGGAATAGAAGACTTCGGAA+TGG - chr7_3:85183296-85183315 None:intergenic 40.0%
GTGGAAGGAATAGAAGACTT+CGG - chr7_3:85183301-85183320 None:intergenic 40.0%
GTTTGCAAATTTGGAAGGGA+AGG - chr7_3:85183357-85183376 None:intergenic 40.0%
AAACTCTCAAACAGACCCTA+AGG - chr7_3:85183384-85183403 None:intergenic 40.0%
TAGGGTCTGTTTGAGAGTTT+AGG + chr7_3:85183384-85183403 Msa1132310:intron 40.0%
GTCTGTTTGAGAGTTTAGGA+AGG + chr7_3:85183388-85183407 Msa1132310:intron 40.0%
! AAGGGAGGACTTTGAAAGAA+AGG + chr7_3:85183407-85183426 Msa1132310:intron 40.0%
! GAGGACTTTGAAAGAAAGGA+AGG + chr7_3:85183411-85183430 Msa1132310:intron 40.0%
GAAAGAAAGGAAGGATGAAG+TGG + chr7_3:85183420-85183439 Msa1132310:intron 40.0%
GATGAAGTGGAAGGAATGAA+GGG + chr7_3:85183433-85183452 Msa1132310:intron 40.0%
!!! AAGGAATGAAGGGTTTTGAG+AGG + chr7_3:85183443-85183462 Msa1132310:intron 40.0%
!!! AGGAATGAAGGGTTTTGAGA+GGG + chr7_3:85183444-85183463 Msa1132310:intron 40.0%
! GTATCACAACTGGATTTTGG+AGG + chr7_3:85183534-85183553 Msa1132310:intron 40.0%
!! AACTGGATTTTGGAGGGTTT+TGG + chr7_3:85183541-85183560 Msa1132310:intron 40.0%
!! CATACTCTAAGGCTTGGTTT+GGG - chr7_3:85183732-85183751 None:intergenic 40.0%
AATGCTGCAACCATACTCTA+AGG - chr7_3:85183743-85183762 None:intergenic 40.0%
CTAGAAGTGACCACTTACAT+AGG - chr7_3:85183952-85183971 None:intergenic 40.0%
ATACATTAGGTCCGGTGATA+TGG + chr7_3:85184058-85184077 Msa1132310:intron 40.0%
AGACAAGGATACAGTTACAG+AGG + chr7_3:85184091-85184110 Msa1132310:CDS 40.0%
TACAGTTACAGAGGCTGATT+TGG + chr7_3:85184100-85184119 Msa1132310:CDS 40.0%
CATCTTCTTGAAGGGAAAGA+TGG + chr7_3:85184134-85184153 Msa1132310:CDS 40.0%
TGCGGATATTGTCTGTAATC+TGG + chr7_3:85184262-85184281 Msa1132310:intron 40.0%
!! AGCCTTTTGGGTGTCAAATA+TGG - chr7_3:85184399-85184418 None:intergenic 40.0%
! TCTTGGAGCTTTTAACAGAC+AGG + chr7_3:85184490-85184509 Msa1132310:intron 40.0%
! CTTGGAGCTTTTAACAGACA+GGG + chr7_3:85184491-85184510 Msa1132310:intron 40.0%
! TTGGAGCTTTTAACAGACAG+GGG + chr7_3:85184492-85184511 Msa1132310:intron 40.0%
AAGAAATCCCTCACTAACTC+AGG - chr7_3:85184559-85184578 None:intergenic 40.0%
AGTTAGTGAGGGATTTCTTC+TGG + chr7_3:85184560-85184579 Msa1132310:CDS 40.0%
GTTAGTGAGGGATTTCTTCT+GGG + chr7_3:85184561-85184580 Msa1132310:CDS 40.0%
ATGGGACATCAATTGTTCAC+TGG + chr7_3:85184653-85184672 Msa1132310:CDS 40.0%
TGCATACTACTGTGTGACAA+AGG + chr7_3:85184822-85184841 Msa1132310:CDS 40.0%
TTCTAGTGACAGAAGAATGG+AGG - chr7_3:85184919-85184938 None:intergenic 40.0%
GTTAGTGCCTTCAGATTAAC+AGG - chr7_3:85184950-85184969 None:intergenic 40.0%
!! CGTTTTGGCAAACTTGGATA+GGG - chr7_3:85185201-85185220 None:intergenic 40.0%
!! TTATCGCGTTTTGGCAAACT+TGG - chr7_3:85185207-85185226 None:intergenic 40.0%
TCTAGTTGGGTAATCAAACC+TGG + chr7_3:85185252-85185271 Msa1132310:CDS 40.0%
CATGTCTTCGTGATGCAAAA+GGG - chr7_3:85185415-85185434 None:intergenic 40.0%
! CTTTTGCATCACGAAGACAT+GGG + chr7_3:85185414-85185433 Msa1132310:CDS 40.0%
! TTTTGCATCACGAAGACATG+GGG + chr7_3:85185415-85185434 Msa1132310:CDS 40.0%
! CATCTGTTTTCCTAGCATTC+TGG - chr7_3:85185524-85185543 None:intergenic 40.0%
TGATGGCAAGTAAAACAACC+AGG + chr7_3:85185565-85185584 Msa1132310:CDS 40.0%
ACAACCAGGCTTTCTTCTAA+TGG + chr7_3:85185579-85185598 Msa1132310:CDS 40.0%
GTTTCCATTAGAAGAAAGCC+TGG - chr7_3:85185586-85185605 None:intergenic 40.0%
TGGAAACTTGCATTCGTTAG+AGG + chr7_3:85185599-85185618 Msa1132310:CDS 40.0%
!!! GCAATTACACGCCTCTTTTT+TGG + chr7_3:85185988-85186007 Msa1132310:three_prime_UTR 40.0%
!!! ATTACACGCCTCTTTTTTGG+AGG + chr7_3:85185991-85186010 Msa1132310:three_prime_UTR 40.0%
!!! TTACACGCCTCTTTTTTGGA+GGG + chr7_3:85185992-85186011 Msa1132310:three_prime_UTR 40.0%
ATCCCCTTTCTATGTTGCGT+TGG + chr7_3:85181869-85181888 Msa1132310:five_prime_UTR 45.0%
ATGTTGCGTTGGATGAAGGA+TGG + chr7_3:85181880-85181899 Msa1132310:five_prime_UTR 45.0%
GGATGAAGGATGGAAGAAGA+AGG + chr7_3:85181890-85181909 Msa1132310:five_prime_UTR 45.0%
TGAAGGATGGAAGAAGAAGG+TGG + chr7_3:85181893-85181912 Msa1132310:five_prime_UTR 45.0%
GATGGAAGAAGAAGGTGGAT+AGG + chr7_3:85181898-85181917 Msa1132310:five_prime_UTR 45.0%
ATCATGACCGCAAGCCAAAT+CGG - chr7_3:85182142-85182161 None:intergenic 45.0%
!! ATTTGGCTTGCGGTCATGAT+CGG + chr7_3:85182142-85182161 Msa1132310:CDS 45.0%
!! GTCATGATCGGTTTGGTGAT+CGG + chr7_3:85182154-85182173 Msa1132310:CDS 45.0%
AAGACCGATGAAGAGAAGTC+CGG - chr7_3:85182203-85182222 None:intergenic 45.0%
GACTTCTCTTCATCGGTCTT+CGG + chr7_3:85182203-85182222 Msa1132310:CDS 45.0%
! GAATTACCGAGAAGCGTGTT+TGG - chr7_3:85182407-85182426 None:intergenic 45.0%
TAGAAGACTTCGGAATGGGA+GGG - chr7_3:85183291-85183310 None:intergenic 45.0%
ATAGAAGACTTCGGAATGGG+AGG - chr7_3:85183292-85183311 None:intergenic 45.0%
AAAAGGAAGAAGCAGGTGGA+AGG - chr7_3:85183316-85183335 None:intergenic 45.0%
GGAAAAAAGGAAGAAGCAGG+TGG - chr7_3:85183320-85183339 None:intergenic 45.0%
AAATTTGGAAGGGAAGGGAG+GGG - chr7_3:85183351-85183370 None:intergenic 45.0%
CAAATTTGGAAGGGAAGGGA+GGG - chr7_3:85183352-85183371 None:intergenic 45.0%
GTTTGAGAGTTTAGGAAGGG+AGG + chr7_3:85183392-85183411 Msa1132310:intron 45.0%
GAAAGGAAGGATGAAGTGGA+AGG + chr7_3:85183424-85183443 Msa1132310:intron 45.0%
GGATGAAGTGGAAGGAATGA+AGG + chr7_3:85183432-85183451 Msa1132310:intron 45.0%
!!! GGAATGAAGGGTTTTGAGAG+GGG + chr7_3:85183445-85183464 Msa1132310:intron 45.0%
!! GATTTTGGAGGGTTTTGGTG+TGG + chr7_3:85183546-85183565 Msa1132310:intron 45.0%
AGTTTGGAGGGGAGATTAGA+GGG - chr7_3:85183709-85183728 None:intergenic 45.0%
!! TAAGGCTTGGTTTGGGAGTT+TGG - chr7_3:85183725-85183744 None:intergenic 45.0%
!! CCATACTCTAAGGCTTGGTT+TGG - chr7_3:85183733-85183752 None:intergenic 45.0%
CCAAACCAAGCCTTAGAGTA+TGG + chr7_3:85183730-85183749 Msa1132310:intron 45.0%
!! TGCAACCATACTCTAAGGCT+TGG - chr7_3:85183738-85183757 None:intergenic 45.0%
TTCGCCGTGATTCTATGTGT+AGG + chr7_3:85183811-85183830 Msa1132310:intron 45.0%
!! AAGTGGTCACTTCTAGTTCC+TGG + chr7_3:85183956-85183975 Msa1132310:intron 45.0%
GGAAAGATGGAGAGATTGAC+TGG + chr7_3:85184147-85184166 Msa1132310:CDS 45.0%
ATGCAACTCCTGAGTTAGTG+AGG + chr7_3:85184548-85184567 Msa1132310:CDS 45.0%
TGCAACTCCTGAGTTAGTGA+GGG + chr7_3:85184549-85184568 Msa1132310:CDS 45.0%
TTGGAGGAATGCCCTCATAA+TGG + chr7_3:85184634-85184653 Msa1132310:CDS 45.0%
TGGAGGAATGCCCTCATAAT+GGG + chr7_3:85184635-85184654 Msa1132310:CDS 45.0%
CTGCAGAAAAAGGGGAACTA+TGG - chr7_3:85184757-85184776 None:intergenic 45.0%
! TCCCCTTTTTCTGCAGTGAT+CGG + chr7_3:85184761-85184780 Msa1132310:CDS 45.0%
TCCCGATCACTGCAGAAAAA+GGG - chr7_3:85184766-85184785 None:intergenic 45.0%
TTCCCGATCACTGCAGAAAA+AGG - chr7_3:85184767-85184786 None:intergenic 45.0%
TATTGCTCGAAGGATTTGGC+AGG + chr7_3:85184792-85184811 Msa1132310:CDS 45.0%
! AAGAATGGAGGCTAGCCATT+GGG - chr7_3:85184907-85184926 None:intergenic 45.0%
!! GCGTTTTGGCAAACTTGGAT+AGG - chr7_3:85185202-85185221 None:intergenic 45.0%
AGTGTGCGAAATTGATGCAG+TGG + chr7_3:85185347-85185366 Msa1132310:intron 45.0%
TGGAATCTCGCAAAGGAGAT+GGG + chr7_3:85185367-85185386 Msa1132310:CDS 45.0%
CCATGTCTTCGTGATGCAAA+AGG - chr7_3:85185416-85185435 None:intergenic 45.0%
! CCTTTTGCATCACGAAGACA+TGG + chr7_3:85185413-85185432 Msa1132310:CDS 45.0%
GCTGTCAAGAAATTGCACTC+TGG + chr7_3:85185486-85185505 Msa1132310:CDS 45.0%
! TGAGAGCATACCAGAATGCT+AGG + chr7_3:85185511-85185530 Msa1132310:CDS 45.0%
TTTGTCGAGATGTGCGTTGA+TGG + chr7_3:85185548-85185567 Msa1132310:CDS 45.0%
GTTAGAGGATGCGTCTTTGA+TGG + chr7_3:85185614-85185633 Msa1132310:CDS 45.0%
ATGCGTCTTTGATGGAAGAG+AGG + chr7_3:85185622-85185641 Msa1132310:CDS 45.0%
TGCGTCTTTGATGGAAGAGA+GGG + chr7_3:85185623-85185642 Msa1132310:CDS 45.0%
! AATCTGTCGGGCATTGTTGA+TGG - chr7_3:85185655-85185674 None:intergenic 45.0%
ATCAACAATGCCCGACAGAT+TGG + chr7_3:85185654-85185673 Msa1132310:CDS 45.0%
!!! GTGGTTTTGGGTATACACAG+TGG + chr7_3:85185723-85185742 Msa1132310:CDS 45.0%
GTATACACAGTGGTGCAGTA+GGG + chr7_3:85185733-85185752 Msa1132310:CDS 45.0%
! ATGACCGACTCAGACTTTCA+GGG - chr7_3:85186072-85186091 None:intergenic 45.0%
! AATGACCGACTCAGACTTTC+AGG - chr7_3:85186073-85186092 None:intergenic 45.0%
!!! TACAAATAAATAATTTTTTT+TGG + chr7_3:85184306-85184325 Msa1132310:intron 5.0%
TGCTATGTGCGGTTCCGATT+TGG + chr7_3:85182125-85182144 Msa1132310:CDS 50.0%
!! TGATCGGTTTGGTGATCGGT+TGG + chr7_3:85182158-85182177 Msa1132310:CDS 50.0%
! GTTTGGTGATCGGTTGGTCA+TGG + chr7_3:85182164-85182183 Msa1132310:CDS 50.0%
TGGACCGGACTTCTCTTCAT+CGG + chr7_3:85182196-85182215 Msa1132310:CDS 50.0%
TTTCTTATGGACGGTTCCGC+CGG + chr7_3:85182237-85182256 Msa1132310:CDS 50.0%
GGCGTCATCAGAACACGAAT+TGG - chr7_3:85182374-85182393 None:intergenic 50.0%
!! AGAAGCGTGTTTGGTAGCGT+CGG - chr7_3:85182398-85182417 None:intergenic 50.0%
ACGCTACCAAACACGCTTCT+CGG + chr7_3:85182398-85182417 Msa1132310:CDS 50.0%
ATGCAGCTGACCCTGTTTAG+TGG + chr7_3:85182878-85182897 Msa1132310:intron 50.0%
TGCAGCTGACCCTGTTTAGT+GGG + chr7_3:85182879-85182898 Msa1132310:intron 50.0%
!! AGGGGAGGGCTTTGGAAAAA+AGG - chr7_3:85183333-85183352 None:intergenic 50.0%
GCAAATTTGGAAGGGAAGGG+AGG - chr7_3:85183353-85183372 None:intergenic 50.0%
!!! ATGAAGGGTTTTGAGAGGGG+AGG + chr7_3:85183448-85183467 Msa1132310:intron 50.0%
!!! TGAAGGGTTTTGAGAGGGGA+GGG + chr7_3:85183449-85183468 Msa1132310:intron 50.0%
!! TTTTGAGAGGGGAGGGCTTT+GGG + chr7_3:85183456-85183475 Msa1132310:intron 50.0%
GTTTGGAGGGGAGATTAGAG+GGG - chr7_3:85183708-85183727 None:intergenic 50.0%
GAGTTTGGAGGGGAGATTAG+AGG - chr7_3:85183710-85183729 None:intergenic 50.0%
!! CTTGGTTTGGGAGTTTGGAG+GGG - chr7_3:85183720-85183739 None:intergenic 50.0%
!! GCTTGGTTTGGGAGTTTGGA+GGG - chr7_3:85183721-85183740 None:intergenic 50.0%
!! GGTCACTTCTAGTTCCTGGA+TGG + chr7_3:85183960-85183979 Msa1132310:intron 50.0%
TCTCTCGTCAGCCATATCAC+CGG - chr7_3:85184072-85184091 None:intergenic 50.0%
TATGGCTGACGAGAGAGACA+AGG + chr7_3:85184076-85184095 Msa1132310:CDS 50.0%
AGCTTGGCGTTATGACTCTG+AGG + chr7_3:85184211-85184230 Msa1132310:CDS 50.0%
GCGAGCATAGGATCCCATTT+GGG - chr7_3:85184601-85184620 None:intergenic 50.0%
TGCGAGCATAGGATCCCATT+TGG - chr7_3:85184602-85184621 None:intergenic 50.0%
ACTTTGCAGTGTGCGAGCAT+AGG - chr7_3:85184613-85184632 None:intergenic 50.0%
CCCGATCACTGCAGAAAAAG+GGG - chr7_3:85184765-85184784 None:intergenic 50.0%
! CCCCTTTTTCTGCAGTGATC+GGG + chr7_3:85184762-85184781 Msa1132310:CDS 50.0%
! GAAGAATGGAGGCTAGCCAT+TGG - chr7_3:85184908-85184927 None:intergenic 50.0%
AAGTAGAGGTCTACGCGTCT+GGG - chr7_3:85185231-85185250 None:intergenic 50.0%
AAAGTAGAGGTCTACGCGTC+TGG - chr7_3:85185232-85185251 None:intergenic 50.0%
GATGCAGTGGAATCTCGCAA+AGG + chr7_3:85185360-85185379 Msa1132310:intron 50.0%
GTGGAATCTCGCAAAGGAGA+TGG + chr7_3:85185366-85185385 Msa1132310:intron 50.0%
GCAAAGTTAGGAGTTCGCCA+TGG + chr7_3:85185453-85185472 Msa1132310:CDS 50.0%
TAGGAGTTCGCCATGGAATG+TGG + chr7_3:85185460-85185479 Msa1132310:CDS 50.0%
AGGAGTTCGCCATGGAATGT+GGG + chr7_3:85185461-85185480 Msa1132310:CDS 50.0%
! AATGCCCGACAGATTGGTCA+CGG + chr7_3:85185660-85185679 Msa1132310:CDS 50.0%
! TGGGACTGTTGCTGTGGTTT+TGG + chr7_3:85185710-85185729 Msa1132310:CDS 50.0%
! GGGACTGTTGCTGTGGTTTT+GGG + chr7_3:85185711-85185730 Msa1132310:CDS 50.0%
GGTATACACAGTGGTGCAGT+AGG + chr7_3:85185732-85185751 Msa1132310:CDS 50.0%
! AGTAGGGCGAGCATTGTTGT+TGG + chr7_3:85185749-85185768 Msa1132310:CDS 50.0%
! GTAGGGCGAGCATTGTTGTT+GGG + chr7_3:85185750-85185769 Msa1132310:CDS 50.0%
! GAGCATTGTTGTTGGGAGCA+GGG + chr7_3:85185757-85185776 Msa1132310:CDS 50.0%
GAGCAGGGCATAGATTTGCA+CGG + chr7_3:85185772-85185791 Msa1132310:CDS 50.0%
TGCACGGAGATGAGAGATCT+AGG + chr7_3:85185788-85185807 Msa1132310:exon 50.0%
CTCTACGCCCTCCAAAAAAG+AGG - chr7_3:85186002-85186021 None:intergenic 50.0%
!! TTTTTGGAGGGCGTAGAGAG+AGG + chr7_3:85186004-85186023 Msa1132310:three_prime_UTR 50.0%
!! TTTTGGAGGGCGTAGAGAGA+GGG + chr7_3:85186005-85186024 Msa1132310:three_prime_UTR 50.0%
TGACCCCTGAAAGTCTGAGT+CGG + chr7_3:85186065-85186084 Msa1132310:three_prime_UTR 50.0%
! TGACCGACTCAGACTTTCAG+GGG - chr7_3:85186071-85186090 None:intergenic 50.0%
GATATACGGGGACACGTGGT+GGG - chr7_3:85181828-85181847 None:intergenic 55.0%
TGATATACGGGGACACGTGG+TGG - chr7_3:85181829-85181848 None:intergenic 55.0%
CAGTGATATACGGGGACACG+TGG - chr7_3:85181832-85181851 None:intergenic 55.0%
!! TGCGGTTCCGATTTGGCTTG+CGG + chr7_3:85182132-85182151 Msa1132310:CDS 55.0%
GCTTGCGGTCATGATCGGTT+TGG + chr7_3:85182147-85182166 Msa1132310:CDS 55.0%
TTCTTATGGACGGTTCCGCC+GGG + chr7_3:85182238-85182257 Msa1132310:CDS 55.0%
CGGTGAACGCTAACCAGAGA+CGG - chr7_3:85182276-85182295 None:intergenic 55.0%
AGAGTTTGAAGGGGAGGGTG+AGG + chr7_3:85183070-85183089 Msa1132310:intron 55.0%
GAGTTTGAAGGGGAGGGTGA+GGG + chr7_3:85183071-85183090 Msa1132310:intron 55.0%
! CTTTGGGGGGAGAGGAATAG+AGG + chr7_3:85183094-85183113 Msa1132310:intron 55.0%
ACTTCGGAATGGGAGGGCTT+TGG - chr7_3:85183285-85183304 None:intergenic 55.0%
!!! GTTTTGAGAGGGGAGGGCTT+TGG + chr7_3:85183455-85183474 Msa1132310:intron 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG + chr7_3:85183457-85183476 Msa1132310:intron 55.0%
!! TGGAGGGTTTTGGTGTGGCT+TGG + chr7_3:85183551-85183570 Msa1132310:intron 55.0%
!! GGCTTGGTTTGGGAGTTTGG+AGG - chr7_3:85183722-85183741 None:intergenic 55.0%
GCTCGCACACTGCAAAGTGT+TGG + chr7_3:85184615-85184634 Msa1132310:CDS 55.0%
!! CGCACACTGCAAAGTGTTGG+AGG + chr7_3:85184618-85184637 Msa1132310:CDS 55.0%
! CGTCTGGGCTTATCGCGTTT+TGG - chr7_3:85185216-85185235 None:intergenic 55.0%
GGAGTTCGCCATGGAATGTG+GGG + chr7_3:85185462-85185481 Msa1132310:CDS 55.0%
TGACAGCTCCCCACATTCCA+TGG - chr7_3:85185473-85185492 None:intergenic 55.0%
! AGATTGGTCACGGCCTGGAT+TGG + chr7_3:85185670-85185689 Msa1132310:CDS 55.0%
! TCACGGCCTGGATTGGAAGT+GGG + chr7_3:85185677-85185696 Msa1132310:CDS 55.0%
GATTGGAAGTGGGTGGCCTT+AGG + chr7_3:85185687-85185706 Msa1132310:CDS 55.0%
CACAGCAACAGTCCCACCTA+AGG - chr7_3:85185706-85185725 None:intergenic 55.0%
CTTAGGTGGGACTGTTGCTG+TGG + chr7_3:85185704-85185723 Msa1132310:CDS 55.0%
! CGAGCATTGTTGTTGGGAGC+AGG + chr7_3:85185756-85185775 Msa1132310:CDS 55.0%
! TTTGGAGGGCGTAGAGAGAG+GGG + chr7_3:85186006-85186025 Msa1132310:three_prime_UTR 55.0%
! TCGGTTGGTCATGGCGTCCA+CGG + chr7_3:85182173-85182192 Msa1132310:CDS 60.0%
AAGAGAAGTCCGGTCCACCG+TGG - chr7_3:85182193-85182212 None:intergenic 60.0%
!! AGCGTGTTTGGTAGCGTCGG+TGG - chr7_3:85182395-85182414 None:intergenic 60.0%
AAGGGGAGGGTGAGGGCTTT+GGG + chr7_3:85183078-85183097 Msa1132310:intron 60.0%
!! CGGAATGGGAGGGCTTTGGA+AGG - chr7_3:85183281-85183300 None:intergenic 60.0%
TTGGAAGGGAAGGGAGGGGA+GGG - chr7_3:85183347-85183366 None:intergenic 60.0%
TTTGGAAGGGAAGGGAGGGG+AGG - chr7_3:85183348-85183367 None:intergenic 60.0%
GCTCGAAGGATTTGGCAGGC+TGG + chr7_3:85184796-85184815 Msa1132310:CDS 60.0%
TGGGCAGTTGTCTGCATGCG+AGG + chr7_3:85185386-85185405 Msa1132310:CDS 60.0%
CAGGCCGTGACCAATCTGTC+GGG - chr7_3:85185667-85185686 None:intergenic 60.0%
CCAGGCCGTGACCAATCTGT+CGG - chr7_3:85185668-85185687 None:intergenic 60.0%
! GTCACGGCCTGGATTGGAAG+TGG + chr7_3:85185676-85185695 Msa1132310:CDS 60.0%
AGGCCACCCACTTCCAATCC+AGG - chr7_3:85185686-85185705 None:intergenic 60.0%
! TGGAAGTGGGTGGCCTTAGG+TGG + chr7_3:85185690-85185709 Msa1132310:CDS 60.0%
! GGAAGTGGGTGGCCTTAGGT+GGG + chr7_3:85185691-85185710 Msa1132310:CDS 60.0%
! TTGGAGGGCGTAGAGAGAGG+GGG + chr7_3:85186007-85186026 Msa1132310:three_prime_UTR 60.0%
GTTGGTCATGGCGTCCACGG+TGG + chr7_3:85182176-85182195 Msa1132310:CDS 65.0%
TCATGGCGTCCACGGTGGAC+CGG + chr7_3:85182181-85182200 Msa1132310:CDS 65.0%
TGGACGGTTCCGCCGGGATT+CGG + chr7_3:85182244-85182263 Msa1132310:CDS 65.0%
!! AGACGGCGAGCACCGAATCC+CGG - chr7_3:85182259-85182278 None:intergenic 65.0%
!! GATTCGGTGCTCGCCGTCTC+TGG + chr7_3:85182260-85182279 Msa1132310:CDS 65.0%
GAAGGGGAGGGTGAGGGCTT+TGG + chr7_3:85183077-85183096 Msa1132310:intron 65.0%
AGGGGAGGGTGAGGGCTTTG+GGG + chr7_3:85183079-85183098 Msa1132310:intron 65.0%
! CCGACAGATTGGTCACGGCC+TGG + chr7_3:85185665-85185684 Msa1132310:CDS 65.0%
! CGGCCTGGATTGGAAGTGGG+TGG + chr7_3:85185680-85185699 Msa1132310:CDS 65.0%
AGGGCGTAGAGAGAGGGGGA+TGG + chr7_3:85186011-85186030 Msa1132310:three_prime_UTR 65.0%
GGGCGTAGAGAGAGGGGGAT+GGG + chr7_3:85186012-85186031 Msa1132310:three_prime_UTR 65.0%
! GGGGAGGGTGAGGGCTTTGG+GGG + chr7_3:85183080-85183099 Msa1132310:intron 70.0%
!! GGGAGGGTGAGGGCTTTGGG+GGG + chr7_3:85183081-85183100 Msa1132310:intron 70.0%
!! GGTGAGGGCTTTGGGGGGAG+AGG + chr7_3:85183086-85183105 Msa1132310:intron 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr7_3:85183341-85183360 None:intergenic 70.0%
!! CGGCGAGCACCGAATCCCGG+CGG - chr7_3:85182256-85182275 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85181722 85186164 85181722 ID=Msa1132310;Name=Msa1132310
chr7_3 mRNA 85181722 85186164 85181722 ID=Msa1132310-mRNA-1;Parent=Msa1132310;Name=Msa1132310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=330|1|1|1|1|0.83|6|364|436
chr7_3 exon 85181722 85182419 85181722 ID=Msa1132310-mRNA-1:exon:25369;Parent=Msa1132310-mRNA-1
chr7_3 exon 85184067 85184232 85184067 ID=Msa1132310-mRNA-1:exon:25370;Parent=Msa1132310-mRNA-1
chr7_3 exon 85184508 85184684 85184508 ID=Msa1132310-mRNA-1:exon:25371;Parent=Msa1132310-mRNA-1
chr7_3 exon 85184760 85184843 85184760 ID=Msa1132310-mRNA-1:exon:25372;Parent=Msa1132310-mRNA-1
chr7_3 exon 85185192 85185273 85185192 ID=Msa1132310-mRNA-1:exon:25373;Parent=Msa1132310-mRNA-1
chr7_3 exon 85185367 85186164 85185367 ID=Msa1132310-mRNA-1:exon:25374;Parent=Msa1132310-mRNA-1
chr7_3 five_prime_UTR 85181722 85182051 85181722 ID=Msa1132310-mRNA-1:five_prime_utr;Parent=Msa1132310-mRNA-1
chr7_3 CDS 85182052 85182419 85182052 ID=Msa1132310-mRNA-1:cds;Parent=Msa1132310-mRNA-1
chr7_3 CDS 85184067 85184232 85184067 ID=Msa1132310-mRNA-1:cds;Parent=Msa1132310-mRNA-1
chr7_3 CDS 85184508 85184684 85184508 ID=Msa1132310-mRNA-1:cds;Parent=Msa1132310-mRNA-1
chr7_3 CDS 85184760 85184843 85184760 ID=Msa1132310-mRNA-1:cds;Parent=Msa1132310-mRNA-1
chr7_3 CDS 85185192 85185273 85185192 ID=Msa1132310-mRNA-1:cds;Parent=Msa1132310-mRNA-1
chr7_3 CDS 85185367 85185800 85185367 ID=Msa1132310-mRNA-1:cds;Parent=Msa1132310-mRNA-1
chr7_3 three_prime_UTR 85185801 85186164 85185801 ID=Msa1132310-mRNA-1:three_prime_utr;Parent=Msa1132310-mRNA-1
Gene Sequence

>Msa1132310

ATGGAGGATTATTTATTCGATGTTATGGAGTTTATGAAGAAACCTTCAATAACGGAAACATTCGTCGATATTTTGCTATGTGCGGTTCCGATTTGGCTTGCGGTCATGATCGGTTTGGTGATCGGTTGGTCATGGCGTCCACGGTGGACCGGACTTCTCTTCATCGGTCTTCGGAGCAAGTTTCGTTTCTTATGGACGGTTCCGCCGGGATTCGGTGCTCGCCGTCTCTGGTTAGCGTTCACCGCTCTTTCTGCTTTCTCTATTTGTCGCAGATATTGGTCTAATTTCAAAAATAAGGAGAAAGTGCTGGATCCTTCTTCCAATTCGTGTTCTGATGACGCCACCGACGCTACCAAACACGCTTCTCGGTCCGGTGATATGGCTGACGAGAGAGACAAGGATACAGTTACAGAGGCTGATTTGGAACATCTTCTTCATCTTCTTGAAGGGAAAGATGGAGAGATTGACTGGCAAAGTTTTATGGAAAGGTCAACACCAAATATGCAATACAAAGCTTGGCGTTATGACTCTGAGACAGGGGCTACAGTTTACCGTAGTAGAACTGTATTTGAAGATGCAACTCCTGAGTTAGTGAGGGATTTCTTCTGGGATGATGATTTTCGTCCCAAATGGGATCCTATGCTCGCACACTGCAAAGTGTTGGAGGAATGCCCTCATAATGGGACATCAATTGTTCACTGGATTAAAAAGTTCCCCTTTTTCTGCAGTGATCGGGAATATATTATTGCTCGAAGGATTTGGCAGGCTGGAAATGCATACTACTGTGTGACAAAGGGGGTTCCCTATCCAAGTTTGCCAAAACGCGATAAGCCCAGACGCGTAGACCTCTACTTTTCTAGTTGGGTAATCAAACCTGTGGAATCTCGCAAAGGAGATGGGCAGTTGTCTGCATGCGAGGTTACCCTTTTGCATCACGAAGACATGGGGATTCCAAAAGATGTTGCAAAGTTAGGAGTTCGCCATGGAATGTGGGGAGCTGTCAAGAAATTGCACTCTGGTATGAGAGCATACCAGAATGCTAGGAAAACAGATGCTTCTTTGTCGAGATGTGCGTTGATGGCAAGTAAAACAACCAGGCTTTCTTCTAATGGAAACTTGCATTCGTTAGAGGATGCGTCTTTGATGGAAGAGAGGGAGCAAGCCATCAACAATGCCCGACAGATTGGTCACGGCCTGGATTGGAAGTGGGTGGCCTTAGGTGGGACTGTTGCTGTGGTTTTGGGTATACACAGTGGTGCAGTAGGGCGAGCATTGTTGTTGGGAGCAGGGCATAGATTTGCACGGAGATGA
Protein sequence

>Msa1132310

MEDYLFDVMEFMKKPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLLFIGLRSKFRFLWTVPPGFGARRLWLAFTALSAFSICRRYWSNFKNKEKVLDPSSNSCSDDATDATKHASRSGDMADERDKDTVTEADLEHLLHLLEGKDGEIDWQSFMERSTPNMQYKAWRYDSETGATVYRSRTVFEDATPELVRDFFWDDDFRPKWDPMLAHCKVLEECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQAGNAYYCVTKGVPYPSLPKRDKPRRVDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDMGIPKDVAKLGVRHGMWGAVKKLHSGMRAYQNARKTDASLSRCALMASKTTRLSSNGNLHSLEDASLMEEREQAINNARQIGHGLDWKWVALGGTVAVVLGIHSGAVGRALLLGAGHRFARR*