Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1033520 | XP_003625031.1 | 98.802 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 7.55e-118 | 340 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1033520 | sp|Q9M1J1|FIS1A_ARATH | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.61e-79 | 234 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1033520 | A2Q2Z4 | 98.802 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 3.60e-118 | 340 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000940 | Msa1033520 | 0.810784 | 9.701744e-51 | -8.615850e-47 |
Msa0006880 | Msa1033520 | 0.816115 | 6.530162e-52 | -8.615850e-47 |
Msa0008840 | Msa1033520 | 0.832581 | 8.713719e-56 | -8.615850e-47 |
Msa0057750 | Msa1033520 | 0.804991 | 1.655920e-49 | -8.615850e-47 |
Msa0061970 | Msa1033520 | 0.814425 | 1.550601e-51 | -8.615850e-47 |
Msa0072170 | Msa1033520 | 0.810886 | 9.221335e-51 | -8.615850e-47 |
Msa0094010 | Msa1033520 | 0.800396 | 1.469722e-48 | -8.615850e-47 |
Msa0101180 | Msa1033520 | 0.814609 | 1.411944e-51 | -8.615850e-47 |
Msa0103070 | Msa1033520 | 0.807733 | 4.376216e-50 | -8.615850e-47 |
Msa0112300 | Msa1033520 | -0.800822 | 1.203459e-48 | -8.615850e-47 |
Msa0113240 | Msa1033520 | 0.812569 | 3.969257e-51 | -8.615850e-47 |
Msa0115370 | Msa1033520 | 0.800719 | 1.263309e-48 | -8.615850e-47 |
Msa0120540 | Msa1033520 | 0.812673 | 3.765686e-51 | -8.615850e-47 |
Msa0606810 | Msa1033520 | 0.824021 | 1.011218e-53 | -8.615850e-47 |
Msa0607510 | Msa1033520 | 0.845329 | 4.347723e-59 | -8.615850e-47 |
Msa0625790 | Msa1033520 | 0.802167 | 6.379141e-49 | -8.615850e-47 |
Msa0626940 | Msa1033520 | 0.810039 | 1.405467e-50 | -8.615850e-47 |
Msa0659140 | Msa1033520 | 0.805447 | 1.329280e-49 | -8.615850e-47 |
Msa0669720 | Msa1033520 | 0.812466 | 4.180198e-51 | -8.615850e-47 |
Msa0669760 | Msa1033520 | 0.801692 | 7.987026e-49 | -8.615850e-47 |
Msa0690550 | Msa1033520 | 0.818584 | 1.816014e-52 | -8.615850e-47 |
Msa0693790 | Msa1033520 | 0.846928 | 1.595625e-59 | -8.615850e-47 |
Msa0711490 | Msa1033520 | 0.805648 | 1.206021e-49 | -8.615850e-47 |
Msa0822170 | Msa1033520 | 0.808115 | 3.628344e-50 | -8.615850e-47 |
Msa0836050 | Msa1033520 | 0.804716 | 1.890186e-49 | -8.615850e-47 |
Msa0121820 | Msa1033520 | 0.802840 | 4.635854e-49 | -8.615850e-47 |
Msa0131450 | Msa1033520 | 0.807813 | 4.207478e-50 | -8.615850e-47 |
Msa0145150 | Msa1033520 | 0.809740 | 1.629504e-50 | -8.615850e-47 |
Msa0166750 | Msa1033520 | 0.842155 | 3.073467e-58 | -8.615850e-47 |
Msa0175290 | Msa1033520 | -0.802686 | 4.987117e-49 | -8.615850e-47 |
Msa0180120 | Msa1033520 | 0.837096 | 6.360083e-57 | -8.615850e-47 |
Msa0183460 | Msa1033520 | 0.819623 | 1.053787e-52 | -8.615850e-47 |
Msa0212750 | Msa1033520 | -0.808967 | 2.387499e-50 | -8.615850e-47 |
Msa0370160 | Msa1033520 | -0.808041 | 3.762958e-50 | -8.615850e-47 |
Msa0439890 | Msa1033520 | 0.815065 | 1.118797e-51 | -8.615850e-47 |
Msa0443430 | Msa1033520 | 0.805069 | 1.594998e-49 | -8.615850e-47 |
Msa0467260 | Msa1033520 | -0.804955 | 1.684480e-49 | -8.615850e-47 |
Msa0479330 | Msa1033520 | 0.801474 | 8.850975e-49 | -8.615850e-47 |
Msa1010460 | Msa1033520 | 0.818549 | 1.850014e-52 | -8.615850e-47 |
Msa1010720 | Msa1033520 | 0.805731 | 1.158492e-49 | -8.615850e-47 |
Msa1030930 | Msa1033520 | 0.824074 | 9.826034e-54 | -8.615850e-47 |
Msa1033520 | Msa1070050 | 0.842069 | 3.238892e-58 | -8.615850e-47 |
Msa1033520 | Msa1073400 | 0.857150 | 1.985711e-62 | -8.615850e-47 |
Msa1033520 | Msa1100530 | -0.820360 | 7.147957e-53 | -8.615850e-47 |
Msa1033520 | Msa1113880 | 0.840744 | 7.229704e-58 | -8.615850e-47 |
Msa1033520 | Msa1133630 | 0.812142 | 4.919227e-51 | -8.615850e-47 |
Msa1033520 | Msa1135810 | -0.806898 | 6.578752e-50 | -8.615850e-47 |
Msa1033520 | Msa1160360 | 0.873408 | 1.504698e-67 | -8.615850e-47 |
Msa1033520 | Msa1172130 | -0.808273 | 3.358664e-50 | -8.615850e-47 |
Msa1033520 | Msa1207730 | 0.828493 | 8.718965e-55 | -8.615850e-47 |
Msa1033520 | Msa1253810 | 0.816284 | 5.987103e-52 | -8.615850e-47 |
Msa1033520 | Msa1310690 | 0.806510 | 7.944595e-50 | -8.615850e-47 |
Msa1033520 | Msa1330890 | -0.823385 | 1.425106e-53 | -8.615850e-47 |
Msa1033520 | Msa1363700 | 0.803120 | 4.055812e-49 | -8.615850e-47 |
Msa1033520 | Msa1365860 | 0.815487 | 9.015169e-52 | -8.615850e-47 |
Msa1033520 | Msa1373880 | 0.807855 | 4.121470e-50 | -8.615850e-47 |
Msa1033520 | Msa1418960 | -0.803896 | 2.800468e-49 | -8.615850e-47 |
Msa0265160 | Msa1033520 | 0.804006 | 2.657391e-49 | -8.615850e-47 |
Msa0280430 | Msa1033520 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
Msa0534080 | Msa1033520 | 0.816683 | 4.873546e-52 | -8.615850e-47 |
Msa0899290 | Msa1033520 | 0.819479 | 1.136511e-52 | -8.615850e-47 |
Msa0905380 | Msa1033520 | 0.821462 | 3.985753e-53 | -8.615850e-47 |
Msa0921870 | Msa1033520 | 0.834084 | 3.677731e-56 | -8.615850e-47 |
Msa0924150 | Msa1033520 | -0.841835 | 3.734194e-58 | -8.615850e-47 |
Msa0928120 | Msa1033520 | 0.805809 | 1.115577e-49 | -8.615850e-47 |
Msa0940830 | Msa1033520 | 0.812780 | 3.568730e-51 | -8.615850e-47 |
Msa0943270 | Msa1033520 | 0.839730 | 1.330610e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1033520 | MtrunA17_Chr7g0256481 | 98.802 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 6.94e-122 | 340 |
Msa1033520 | MtrunA17_Chr5g0442081 | 63.095 | 168 | 61 | 1 | 1 | 167 | 4 | 171 | 1.68e-75 | 223 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1033520 | AT3G57090.2 | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.77e-80 | 234 |
Msa1033520 | AT3G57090.1 | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.77e-80 | 234 |
Msa1033520 | AT5G12390.1 | 55.357 | 168 | 67 | 2 | 1 | 163 | 1 | 165 | 1.61e-63 | 193 |
Find 57 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATACATGCTTGGATAAT+TGG | 0.162647 | 7_1:-68710581 | Msa1033520:three_prime_UTR |
TCCTAGGAGTCGGCAGCTTC+TGG | 0.252357 | 7_1:-68711947 | Msa1033520:CDS |
AAAATTGTAGTTATCAAATA+AGG | 0.270444 | 7_1:+68710504 | None:intergenic |
ATGTATAGATTCAATTCTTT+CGG | 0.289178 | 7_1:+68710595 | None:intergenic |
TGTATAGATTCAATTCTTTC+GGG | 0.299564 | 7_1:+68710596 | None:intergenic |
ATTATGATTCGCAGCTTCTT+TGG | 0.302296 | 7_1:-68712046 | Msa1033520:intron |
GGAAAGTTACCTGTATTTCT+TGG | 0.332467 | 7_1:+68713489 | None:intergenic |
GTAACTTTCCGTTGAGTTGC+AGG | 0.337755 | 7_1:-68713476 | Msa1033520:five_prime_UTR |
TTCTTGCTGTTGGGTACTAC+AGG | 0.348000 | 7_1:-68711981 | Msa1033520:CDS |
GGCATCACTGCAACAGCTGC+AGG | 0.350680 | 7_1:-68710651 | Msa1033520:CDS |
AGCTTTATCTTCTTGCTGTT+GGG | 0.356980 | 7_1:-68711990 | Msa1033520:CDS |
GCAGCTTCTGGAGCAATGTT+TGG | 0.361994 | 7_1:-68711935 | Msa1033520:CDS |
TTATGATTCGCAGCTTCTTT+GGG | 0.372741 | 7_1:-68712045 | Msa1033520:intron |
CCTTGCAGATTGCACCTGAT+TGG | 0.393005 | 7_1:-68710806 | Msa1033520:intron |
CATGGGCACTTGTTCATTCA+AGG | 0.399932 | 7_1:-68712918 | Msa1033520:CDS |
GCAGATGGTGTAATAGGAAT+TGG | 0.406309 | 7_1:-68710672 | Msa1033520:intron |
AAGCTTTATCTTCTTGCTGT+TGG | 0.416064 | 7_1:-68711991 | Msa1033520:CDS |
AGCTTCTCTCTTTGATGTAA+AGG | 0.431754 | 7_1:+68712009 | None:intergenic |
GCTCATGCAGATGGTGTAAT+AGG | 0.436512 | 7_1:-68710678 | Msa1033520:intron |
GACAATGCCTGCCTCCAATC+AGG | 0.442415 | 7_1:+68710792 | None:intergenic |
GCTTCTGGAGCAATGTTTGG+AGG | 0.445797 | 7_1:-68711932 | Msa1033520:intron |
TCCCTCGGAAACTTCTTTAC+CGG | 0.457316 | 7_1:-68713403 | Msa1033520:CDS |
GAAGTTGCAGAGGCTTCTAA+TGG | 0.471526 | 7_1:-68712982 | Msa1033520:CDS |
AAAAGTATAGAAATTAGAAA+TGG | 0.474025 | 7_1:-68713560 | None:intergenic |
GGAAGCTTCTTTGAATCCCT+CGG | 0.481996 | 7_1:-68713418 | Msa1033520:CDS |
TGCAGATTGCACCTGATTGG+AGG | 0.488276 | 7_1:-68710803 | Msa1033520:intron |
TGGTGTCATTGCTGCAGCAT+TGG | 0.513273 | 7_1:-68710619 | Msa1033520:CDS |
TCCAGAAGCTGCCGACTCCT+AGG | 0.515588 | 7_1:+68711946 | None:intergenic |
TGATAGTTAACCGTCGTCGA+TGG | 0.516268 | 7_1:-68713452 | Msa1033520:exon |
AGTAATTATACTTTCGAGCA+TGG | 0.516555 | 7_1:+68712867 | None:intergenic |
CCGGCGGCGATCAGATCCCT+TGG | 0.523323 | 7_1:-68713384 | Msa1033520:CDS |
AGAGCATAATGAGGTTGTCA+TGG | 0.535428 | 7_1:-68712936 | Msa1033520:CDS |
ACAGGGCCACTGATTATCCT+AGG | 0.539913 | 7_1:-68711963 | Msa1033520:CDS |
GAATTGAATCTATACATGCT+TGG | 0.552208 | 7_1:-68710589 | Msa1033520:exon |
GTCGAAGAACGAATTGCAAA+GGG | 0.553821 | 7_1:-68710756 | Msa1033520:intron |
GATTGCACCTGATTGGAGGC+AGG | 0.564228 | 7_1:-68710799 | Msa1033520:CDS |
TCTTGCTGTTGGGTACTACA+GGG | 0.572141 | 7_1:-68711980 | Msa1033520:CDS |
TAACTTTCCGTTGAGTTGCA+GGG | 0.573150 | 7_1:-68713475 | Msa1033520:five_prime_UTR |
CCAAGGGATCTGATCGCCGC+CGG | 0.574729 | 7_1:+68713384 | None:intergenic |
TAGTTAACCGTCGTCGATGG+AGG | 0.589229 | 7_1:-68713449 | Msa1033520:exon |
GAGCATAATGAGGTTGTCAT+GGG | 0.590973 | 7_1:-68712935 | Msa1033520:CDS |
AGTCGAAGAACGAATTGCAA+AGG | 0.598958 | 7_1:-68710757 | Msa1033520:CDS |
CTGTGAAAGAGAAGTTGCAG+AGG | 0.603501 | 7_1:-68712992 | Msa1033520:CDS |
GCATCACTGCAACAGCTGCA+GGG | 0.604640 | 7_1:-68710650 | Msa1033520:CDS |
TGACATCACGGTCGCACCAA+GGG | 0.605500 | 7_1:+68713368 | None:intergenic |
CCACTGATTATCCTAGGAGT+CGG | 0.611803 | 7_1:-68711957 | Msa1033520:CDS |
CGCCGGTAAAGAAGTTTCCG+AGG | 0.620017 | 7_1:+68713401 | None:intergenic |
GCCGGTAAAGAAGTTTCCGA+GGG | 0.620980 | 7_1:+68713402 | None:intergenic |
ACTATCACCCTGCAACTCAA+CGG | 0.626960 | 7_1:+68713468 | None:intergenic |
CTCGGAAACTTCTTTACCGG+CGG | 0.628306 | 7_1:-68713400 | Msa1033520:CDS |
ATGACATCACGGTCGCACCA+AGG | 0.644581 | 7_1:+68713367 | None:intergenic |
GTAAGAATGAGAGCATAATG+AGG | 0.656100 | 7_1:-68712945 | Msa1033520:CDS |
TTTCGAGCATGGCAATCCCA+CGG | 0.664812 | 7_1:+68712878 | None:intergenic |
AACAAGAAGATATTCACCGT+GGG | 0.666532 | 7_1:-68712894 | Msa1033520:CDS |
AAGTTACAGAGATGACATCA+CGG | 0.723970 | 7_1:+68713356 | None:intergenic |
CCGACTCCTAGGATAATCAG+TGG | 0.729427 | 7_1:+68711957 | None:intergenic |
CAACAAGAAGATATTCACCG+TGG | 0.736975 | 7_1:-68712895 | Msa1033520:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAATATAAGAAAAAATATT+CGG | + | chr7_1:68711044-68711063 | None:intergenic | 10.0% |
!! | AAAATTGTAGTTATCAAATA+AGG | + | chr7_1:68713382-68713401 | None:intergenic | 15.0% |
!!! | AACAGATAATTTTAGTTTAA+TGG | + | chr7_1:68713537-68713556 | None:intergenic | 15.0% |
!! | TCAAAAAAGCTATTAATTTC+CGG | + | chr7_1:68710628-68710647 | None:intergenic | 20.0% |
!!! | ATTTTGATTTGTTTGAGTTT+AGG | - | chr7_1:68710748-68710767 | Msa1033520:intron | 20.0% |
!!! | TTTTGATTTGTTTGAGTTTA+GGG | - | chr7_1:68710749-68710768 | Msa1033520:intron | 20.0% |
!! | TTCTGATTATTATTCTGTAT+AGG | - | chr7_1:68711060-68711079 | Msa1033520:intron | 20.0% |
!! | AATCATATTCATATGTTCAT+TGG | - | chr7_1:68711138-68711157 | Msa1033520:intron | 20.0% |
!! | ATGCAATACAACTAAAATAA+TGG | - | chr7_1:68711406-68711425 | Msa1033520:intron | 20.0% |
!! | ATAATAATTATGGATGTACA+AGG | + | chr7_1:68711822-68711841 | None:intergenic | 20.0% |
!!! | TTTGTTTTGATTTTCTCTTT+GGG | - | chr7_1:68712093-68712112 | Msa1033520:intron | 20.0% |
!! | AACTAATTGTTGAAAAAACA+GGG | + | chr7_1:68712181-68712200 | None:intergenic | 20.0% |
!! | AAACAGTAATAAGAAAAAAC+AGG | + | chr7_1:68712807-68712826 | None:intergenic | 20.0% |
!! | TGGATCAAAATAAAATCAAT+GGG | + | chr7_1:68712864-68712883 | None:intergenic | 20.0% |
!!! | TCTTTTATCTCTAAATTTTG+AGG | - | chr7_1:68713046-68713065 | Msa1033520:intron | 20.0% |
!! | ATGTATAGATTCAATTCTTT+CGG | + | chr7_1:68713291-68713310 | None:intergenic | 20.0% |
!!! | TTTGCTTATTTTACTTTCAT+CGG | - | chr7_1:68713327-68713346 | Msa1033520:intron | 20.0% |
!!! | ACATTTGTTTTTTTACAAAC+GGG | + | chr7_1:68713470-68713489 | None:intergenic | 20.0% |
!!! | CACATTTGTTTTTTTACAAA+CGG | + | chr7_1:68713471-68713490 | None:intergenic | 20.0% |
!!! | GTTTTTTTTGTTGTGTGTTT+TGG | + | chr7_1:68710358-68710377 | None:intergenic | 25.0% |
! | TACAAAAAACCAAGAAATAC+AGG | - | chr7_1:68710385-68710404 | Msa1033520:three_prime_UTR | 25.0% |
! | AGAAATAACATGAATTGAGA+GGG | + | chr7_1:68710570-68710589 | None:intergenic | 25.0% |
! | AAGAAATAACATGAATTGAG+AGG | + | chr7_1:68710571-68710590 | None:intergenic | 25.0% |
! | CTCAAACAAATCAAAATTGA+GGG | + | chr7_1:68710745-68710764 | None:intergenic | 25.0% |
! | ACTCAAACAAATCAAAATTG+AGG | + | chr7_1:68710746-68710765 | None:intergenic | 25.0% |
!! | ATTTTCAATCTGGTTATGAA+AGG | + | chr7_1:68710777-68710796 | None:intergenic | 25.0% |
!! | ACCAGATTGAAAATTTTATC+TGG | - | chr7_1:68710783-68710802 | Msa1033520:CDS | 25.0% |
!! | CCAGATTGAAAATTTTATCT+GGG | - | chr7_1:68710784-68710803 | Msa1033520:CDS | 25.0% |
!!! | TTTTCATTGCATTGTTTTGA+AGG | - | chr7_1:68710867-68710886 | Msa1033520:intron | 25.0% |
!!! | TTTCATTGCATTGTTTTGAA+GGG | - | chr7_1:68710868-68710887 | Msa1033520:intron | 25.0% |
! | ATTATTCTGTATAGGTTCAT+TGG | - | chr7_1:68711068-68711087 | Msa1033520:intron | 25.0% |
! | CAAATTAATGTAACTTCTCT+TGG | - | chr7_1:68711293-68711312 | Msa1033520:intron | 25.0% |
! | AAAAAAACACATAGCAAGAA+AGG | + | chr7_1:68711738-68711757 | None:intergenic | 25.0% |
!! | TATATTTTTCTTGCCTTTTC+TGG | - | chr7_1:68712013-68712032 | Msa1033520:CDS | 25.0% |
! | TAACAATATGAACATACACT+GGG | + | chr7_1:68712064-68712083 | None:intergenic | 25.0% |
!!! | CTTTGTTTTGATTTTCTCTT+TGG | - | chr7_1:68712092-68712111 | Msa1033520:intron | 25.0% |
! | ACTAATTGTTGAAAAAACAG+GGG | + | chr7_1:68712180-68712199 | None:intergenic | 25.0% |
! | GAACTAATTGTTGAAAAAAC+AGG | + | chr7_1:68712182-68712201 | None:intergenic | 25.0% |
! | ATAACAAATTCCTTCAGAAA+CGG | - | chr7_1:68712500-68712519 | Msa1033520:intron | 25.0% |
! | TATAGAACACTATGATTCTT+CGG | - | chr7_1:68712689-68712708 | Msa1033520:intron | 25.0% |
! | GTGGATCAAAATAAAATCAA+TGG | + | chr7_1:68712865-68712884 | None:intergenic | 25.0% |
! | TATTCACAAATATCAGCATA+AGG | + | chr7_1:68712897-68712916 | None:intergenic | 25.0% |
! | ATCGCATTAACATTAACTAA+TGG | - | chr7_1:68713175-68713194 | Msa1033520:intron | 25.0% |
! | TGTATAGATTCAATTCTTTC+GGG | + | chr7_1:68713290-68713309 | None:intergenic | 25.0% |
!! | TATTTTCACTTATGTATGTG+CGG | + | chr7_1:68713437-68713456 | None:intergenic | 25.0% |
! | CCCAGATAAAATTTTCAATC+TGG | + | chr7_1:68710787-68710806 | None:intergenic | 30.0% |
!! | ATTTTATCTGGGATTATTGC+TGG | - | chr7_1:68710795-68710814 | Msa1033520:CDS | 30.0% |
AGTAATTATACTTTCGAGCA+TGG | + | chr7_1:68711019-68711038 | None:intergenic | 30.0% | |
! | TACATTAATTTGAGCACAAC+AGG | + | chr7_1:68711285-68711304 | None:intergenic | 30.0% |
TATCACACAAACTTTAGTGT+AGG | - | chr7_1:68711483-68711502 | Msa1033520:intron | 30.0% | |
TTTACTAAATTAGCGTGTGA+AGG | - | chr7_1:68711520-68711539 | Msa1033520:intron | 30.0% | |
TTACTAAATTAGCGTGTGAA+GGG | - | chr7_1:68711521-68711540 | Msa1033520:intron | 30.0% | |
ACATCAGTCATATCTCTTTA+GGG | + | chr7_1:68711767-68711786 | None:intergenic | 30.0% | |
AACATCAGTCATATCTCTTT+AGG | + | chr7_1:68711768-68711787 | None:intergenic | 30.0% | |
TATTATGCCCTTTATATGCA+TGG | - | chr7_1:68711792-68711811 | Msa1033520:intron | 30.0% | |
GCTGCGAATCATAATAATTA+TGG | + | chr7_1:68711832-68711851 | None:intergenic | 30.0% | |
GTAACAATATGAACATACAC+TGG | + | chr7_1:68712065-68712084 | None:intergenic | 30.0% | |
GGAAAGAGATCTCAAATTAT+AGG | + | chr7_1:68712305-68712324 | None:intergenic | 30.0% | |
TGATAGCATCTTGAATAACA+AGG | + | chr7_1:68712326-68712345 | None:intergenic | 30.0% | |
TATTCAAGATGCTATCAGTT+AGG | - | chr7_1:68712329-68712348 | Msa1033520:intron | 30.0% | |
ACTGCTAATAACAAAGGAAA+GGG | + | chr7_1:68712357-68712376 | None:intergenic | 30.0% | |
TTTGTGACTGCTAATAACAA+AGG | + | chr7_1:68712363-68712382 | None:intergenic | 30.0% | |
! | TTGTTATTAGCAGTCACAAA+AGG | - | chr7_1:68712363-68712382 | Msa1033520:intron | 30.0% |
!! | AAGGAATTTGTTATCCACAA+AGG | + | chr7_1:68712494-68712513 | None:intergenic | 30.0% |
!! | AACGGTTTTATATCGTTGAT+TGG | - | chr7_1:68712518-68712537 | Msa1033520:intron | 30.0% |
!! | GTTTTATATCGTTGATTGGT+CGG | - | chr7_1:68712522-68712541 | Msa1033520:intron | 30.0% |
!! | TTTTAGAAGTAGATCTGTCA+AGG | - | chr7_1:68712642-68712661 | Msa1033520:intron | 30.0% |
ATAGTGTTCTATAGGAAATG+TGG | + | chr7_1:68712682-68712701 | None:intergenic | 30.0% | |
GAAGAATCATAGTGTTCTAT+AGG | + | chr7_1:68712690-68712709 | None:intergenic | 30.0% | |
AAAAAACAGGCTCTCTAATA+TGG | + | chr7_1:68712794-68712813 | None:intergenic | 30.0% | |
TATTACTGTTTGTATGTGAG+TGG | - | chr7_1:68712816-68712835 | Msa1033520:intron | 30.0% | |
ATTACTGTTTGTATGTGAGT+GGG | - | chr7_1:68712817-68712836 | Msa1033520:intron | 30.0% | |
! | TTCTTCGACTGTTTTCTTAA+GGG | + | chr7_1:68713116-68713135 | None:intergenic | 30.0% |
GAATTGAATCTATACATGCT+TGG | - | chr7_1:68713294-68713313 | Msa1033520:intron | 30.0% | |
TCTATACATGCTTGGATAAT+TGG | - | chr7_1:68713302-68713321 | Msa1033520:intron | 30.0% | |
!! | GTAAACATTTTGATGTCAAC+AGG | - | chr7_1:68713349-68713368 | Msa1033520:intron | 30.0% |
GGAAAGTTACCTGTATTTCT+TGG | + | chr7_1:68710397-68710416 | None:intergenic | 35.0% | |
AAGTTACAGAGATGACATCA+CGG | + | chr7_1:68710530-68710549 | None:intergenic | 35.0% | |
ACTCAGAATTTCAATTGTGC+CGG | - | chr7_1:68710606-68710625 | Msa1033520:CDS | 35.0% | |
! | AAAATTGAGGGCGCAAAATA+TGG | + | chr7_1:68710733-68710752 | None:intergenic | 35.0% |
! | GTAAGAATGAGAGCATAATG+AGG | - | chr7_1:68710938-68710957 | Msa1033520:intron | 35.0% |
AACAAGAAGATATTCACCGT+GGG | - | chr7_1:68710989-68711008 | Msa1033520:intron | 35.0% | |
ATCACAAGACGTAGAATAGA+CGG | + | chr7_1:68711169-68711188 | None:intergenic | 35.0% | |
TTCTACGTCTTGTGATTTCT+TGG | - | chr7_1:68711173-68711192 | Msa1033520:intron | 35.0% | |
TCAACGCTATATTGCATACT+CGG | - | chr7_1:68711200-68711219 | Msa1033520:intron | 35.0% | |
ACAACTAGCAATGAAGACAT+TGG | + | chr7_1:68711331-68711350 | None:intergenic | 35.0% | |
TTGGAATTATTCATTCAGGC+TGG | + | chr7_1:68711366-68711385 | None:intergenic | 35.0% | |
GCAGTTGGAATTATTCATTC+AGG | + | chr7_1:68711370-68711389 | None:intergenic | 35.0% | |
ACAAACTTTAGTGTAGGAGT+AGG | - | chr7_1:68711489-68711508 | Msa1033520:intron | 35.0% | |
TCAAGCTGGTCCAATTATAA+TGG | + | chr7_1:68711549-68711568 | None:intergenic | 35.0% | |
AGCTTGAGAGGAAAATCTAA+CGG | - | chr7_1:68711562-68711581 | Msa1033520:intron | 35.0% | |
AAACACATAGCAAGAAAGGA+GGG | + | chr7_1:68711734-68711753 | None:intergenic | 35.0% | |
AAAACACATAGCAAGAAAGG+AGG | + | chr7_1:68711735-68711754 | None:intergenic | 35.0% | |
ATTATGATTCGCAGCTTCTT+TGG | - | chr7_1:68711837-68711856 | Msa1033520:intron | 35.0% | |
TTATGATTCGCAGCTTCTTT+GGG | - | chr7_1:68711838-68711857 | Msa1033520:intron | 35.0% | |
AGCTTCTCTCTTTGATGTAA+AGG | + | chr7_1:68711877-68711896 | None:intergenic | 35.0% | |
! | AAGCTTTATCTTCTTGCTGT+TGG | - | chr7_1:68711892-68711911 | Msa1033520:intron | 35.0% |
!! | AGCTTTATCTTCTTGCTGTT+GGG | - | chr7_1:68711893-68711912 | Msa1033520:intron | 35.0% |
TGGATATTGGATACTTCACA+AGG | + | chr7_1:68712127-68712146 | None:intergenic | 35.0% | |
GATACATTGTCTATGTGATG+TGG | - | chr7_1:68712220-68712239 | Msa1033520:intron | 35.0% | |
GACTGCTAATAACAAAGGAA+AGG | + | chr7_1:68712358-68712377 | None:intergenic | 35.0% | |
TTTAATAAACCCAGCTGGAT+TGG | - | chr7_1:68712389-68712408 | Msa1033520:intron | 35.0% | |
CTTCTTAGTGAGAGGTTTAT+TGG | - | chr7_1:68712463-68712482 | Msa1033520:intron | 35.0% | |
GTTTATTGGACAATCCTTTG+TGG | - | chr7_1:68712477-68712496 | Msa1033520:intron | 35.0% | |
CGATATAAAACCGTTTCTGA+AGG | + | chr7_1:68712513-68712532 | None:intergenic | 35.0% | |
TATAGGAAATGTGGAGAATC+AGG | + | chr7_1:68712673-68712692 | None:intergenic | 35.0% | |
TCCATGCCTGTTATTACATA+TGG | - | chr7_1:68712714-68712733 | Msa1033520:intron | 35.0% | |
CCATGCCTGTTATTACATAT+GGG | - | chr7_1:68712715-68712734 | Msa1033520:intron | 35.0% | |
GCTTTCCCATATGTAATAAC+AGG | + | chr7_1:68712723-68712742 | None:intergenic | 35.0% | |
AGTCCTTTGTCTAACATGAA+CGG | - | chr7_1:68713008-68713027 | Msa1033520:intron | 35.0% | |
! | GTTCTTCGACTGTTTTCTTA+AGG | + | chr7_1:68713117-68713136 | None:intergenic | 35.0% |
! | TAACTTTCCGTTGAGTTGCA+GGG | - | chr7_1:68710408-68710427 | Msa1033520:three_prime_UTR | 40.0% |
AGAGGGATAAGAGAAAGAAG+AGG | + | chr7_1:68710553-68710572 | None:intergenic | 40.0% | |
! | ATCTGGGATTATTGCTGGAA+TGG | - | chr7_1:68710800-68710819 | Msa1033520:CDS | 40.0% |
AGAGCATAATGAGGTTGTCA+TGG | - | chr7_1:68710947-68710966 | Msa1033520:intron | 40.0% | |
GAGCATAATGAGGTTGTCAT+GGG | - | chr7_1:68710948-68710967 | Msa1033520:intron | 40.0% | |
CAACAAGAAGATATTCACCG+TGG | - | chr7_1:68710988-68711007 | Msa1033520:intron | 40.0% | |
TCACAAGACGTAGAATAGAC+GGG | + | chr7_1:68711168-68711187 | None:intergenic | 40.0% | |
TAGCAGCTATATGTGACAGA+AGG | + | chr7_1:68711247-68711266 | None:intergenic | 40.0% | |
! | TGTGTTACTCTTGATGCAGT+TGG | + | chr7_1:68711385-68711404 | None:intergenic | 40.0% |
ACTTTAGTGTAGGAGTAGGA+CGG | - | chr7_1:68711493-68711512 | Msa1033520:intron | 40.0% | |
!! | GTGAAGGGCACCATTATAAT+TGG | - | chr7_1:68711536-68711555 | Msa1033520:intron | 40.0% |
TATAATTGGACCAGCTTGAG+AGG | - | chr7_1:68711550-68711569 | Msa1033520:intron | 40.0% | |
! | GTTAGATTTTCCTCTCAAGC+TGG | + | chr7_1:68711563-68711582 | None:intergenic | 40.0% |
GTTGGAGGAAGTTTAGATCA+TGG | + | chr7_1:68711598-68711617 | None:intergenic | 40.0% | |
AGGTCAGCCATGCATATAAA+GGG | + | chr7_1:68711802-68711821 | None:intergenic | 40.0% | |
AAGGTCAGCCATGCATATAA+AGG | + | chr7_1:68711803-68711822 | None:intergenic | 40.0% | |
TGATGATCTGACACCAGAAA+AGG | + | chr7_1:68712029-68712048 | None:intergenic | 40.0% | |
AGAGTCAACACAGTGGATAT+TGG | + | chr7_1:68712140-68712159 | None:intergenic | 40.0% | |
! | TGTGATGTGGATGCTTTTGT+TGG | - | chr7_1:68712233-68712252 | Msa1033520:intron | 40.0% |
! | GTGATGTGGATGCTTTTGTT+GGG | - | chr7_1:68712234-68712253 | Msa1033520:intron | 40.0% |
! | GGACTTTTAATAAACCCAGC+TGG | - | chr7_1:68712384-68712403 | Msa1033520:intron | 40.0% |
TGGCTTAGTAGAAACATGCT+AGG | - | chr7_1:68712409-68712428 | Msa1033520:intron | 40.0% | |
CAGACATACTTCTTAGTGAG+AGG | - | chr7_1:68712455-68712474 | Msa1033520:intron | 40.0% | |
! | ATATCGTTGATTGGTCGGTA+TGG | - | chr7_1:68712527-68712546 | Msa1033520:intron | 40.0% |
ACGTGATTGTTTACGAAAGC+AGG | - | chr7_1:68712551-68712570 | Msa1033520:intron | 40.0% | |
TGATTGTTTACGAAAGCAGG+AGG | - | chr7_1:68712554-68712573 | Msa1033520:intron | 40.0% | |
CCCATATGTAATAACAGGCA+TGG | + | chr7_1:68712718-68712737 | None:intergenic | 40.0% | |
CAGCATAAGGTCATTAGTAG+TGG | + | chr7_1:68712884-68712903 | None:intergenic | 40.0% | |
GAACCGTTCATGTTAGACAA+AGG | + | chr7_1:68713014-68713033 | None:intergenic | 40.0% | |
AGTCGAAGAACGAATTGCAA+AGG | - | chr7_1:68713126-68713145 | Msa1033520:intron | 40.0% | |
GTCGAAGAACGAATTGCAAA+GGG | - | chr7_1:68713127-68713146 | Msa1033520:intron | 40.0% | |
GCAGATGGTGTAATAGGAAT+TGG | - | chr7_1:68713211-68713230 | Msa1033520:intron | 40.0% | |
! | GTAACTTTCCGTTGAGTTGC+AGG | - | chr7_1:68710407-68710426 | Msa1033520:three_prime_UTR | 45.0% |
ACTATCACCCTGCAACTCAA+CGG | + | chr7_1:68710418-68710437 | None:intergenic | 45.0% | |
TGATAGTTAACCGTCGTCGA+TGG | - | chr7_1:68710431-68710450 | Msa1033520:three_prime_UTR | 45.0% | |
!! | ATTTTAGCCTCCATCGACGA+CGG | + | chr7_1:68710444-68710463 | None:intergenic | 45.0% |
TCGTCGATGGAGGCTAAAAT+CGG | - | chr7_1:68710444-68710463 | Msa1033520:three_prime_UTR | 45.0% | |
GGAAGCTTCTTTGAATCCCT+CGG | - | chr7_1:68710465-68710484 | Msa1033520:three_prime_UTR | 45.0% | |
TCCCTCGGAAACTTCTTTAC+CGG | - | chr7_1:68710480-68710499 | Msa1033520:three_prime_UTR | 45.0% | |
CTGTGAAAGAGAAGTTGCAG+AGG | - | chr7_1:68710891-68710910 | Msa1033520:intron | 45.0% | |
GAAGTTGCAGAGGCTTCTAA+TGG | - | chr7_1:68710901-68710920 | Msa1033520:intron | 45.0% | |
CATGGGCACTTGTTCATTCA+AGG | - | chr7_1:68710965-68710984 | Msa1033520:intron | 45.0% | |
AGAAGTCTGCTTTGCATCGT+TGG | + | chr7_1:68711616-68711635 | None:intergenic | 45.0% | |
! | AGATCAGCCTGAGATGCTTT+TGG | - | chr7_1:68711667-68711686 | Msa1033520:intron | 45.0% |
!! | ATTCACGCCAAAAGCATCTC+AGG | + | chr7_1:68711677-68711696 | None:intergenic | 45.0% |
TTAGACAACTTCCTCGCCTT+AGG | - | chr7_1:68711697-68711716 | Msa1033520:intron | 45.0% | |
TAGACAACTTCCTCGCCTTA+GGG | - | chr7_1:68711698-68711717 | Msa1033520:intron | 45.0% | |
!! | TTCTTGCTGTTGGGTACTAC+AGG | - | chr7_1:68711902-68711921 | Msa1033520:intron | 45.0% |
!! | TCTTGCTGTTGGGTACTACA+GGG | - | chr7_1:68711903-68711922 | Msa1033520:intron | 45.0% |
! | CCACTGATTATCCTAGGAGT+CGG | - | chr7_1:68711926-68711945 | Msa1033520:intron | 45.0% |
TCTACTAAGCCAATCCAGCT+GGG | + | chr7_1:68712401-68712420 | None:intergenic | 45.0% | |
TTCTACTAAGCCAATCCAGC+TGG | + | chr7_1:68712402-68712421 | None:intergenic | 45.0% | |
ATGGGAAAGCTGACAACACT+AGG | - | chr7_1:68712733-68712752 | Msa1033520:intron | 45.0% | |
GCTCATGCAGATGGTGTAAT+AGG | - | chr7_1:68713205-68713224 | Msa1033520:intron | 45.0% | |
!!! | TTAATATTTTTTTATTTGTT+AGG | - | chr7_1:68713401-68713420 | Msa1033520:CDS | 5.0% |
TAGTTAACCGTCGTCGATGG+AGG | - | chr7_1:68710434-68710453 | Msa1033520:three_prime_UTR | 50.0% | |
GCCGGTAAAGAAGTTTCCGA+GGG | + | chr7_1:68710484-68710503 | None:intergenic | 50.0% | |
CTCGGAAACTTCTTTACCGG+CGG | - | chr7_1:68710483-68710502 | Msa1033520:three_prime_UTR | 50.0% | |
TTTCGAGCATGGCAATCCCA+CGG | + | chr7_1:68711008-68711027 | None:intergenic | 50.0% | |
TTAGTGTAGGAGTAGGACGG+TGG | - | chr7_1:68711496-68711515 | Msa1033520:intron | 50.0% | |
AGTCTGCTTTGCATCGTTGG+AGG | + | chr7_1:68711613-68711632 | None:intergenic | 50.0% | |
! | ACAGGGCCACTGATTATCCT+AGG | - | chr7_1:68711920-68711939 | Msa1033520:intron | 50.0% |
CCGACTCCTAGGATAATCAG+TGG | + | chr7_1:68711929-68711948 | None:intergenic | 50.0% | |
!! | GCAGCTTCTGGAGCAATGTT+TGG | - | chr7_1:68711948-68711967 | Msa1033520:CDS | 50.0% |
!! | GCTTCTGGAGCAATGTTTGG+AGG | - | chr7_1:68711951-68711970 | Msa1033520:CDS | 50.0% |
! | CCAGTCTAGAGTCAACACAG+TGG | + | chr7_1:68712147-68712166 | None:intergenic | 50.0% |
!! | CCACTGTGTTGACTCTAGAC+TGG | - | chr7_1:68712144-68712163 | Msa1033520:intron | 50.0% |
! | TGGATGCTTTTGTTGGGCGT+TGG | - | chr7_1:68712240-68712259 | Msa1033520:intron | 50.0% |
! | GGATGCTTTTGTTGGGCGTT+GGG | - | chr7_1:68712241-68712260 | Msa1033520:intron | 50.0% |
AACATGCTAGGTCTGCGAGT+AGG | - | chr7_1:68712421-68712440 | Msa1033520:intron | 50.0% | |
CGAAAGCAGGAGGATACATG+TGG | - | chr7_1:68712564-68712583 | Msa1033520:intron | 50.0% | |
CAGGTGCAATCTGCAAGGAT+AGG | + | chr7_1:68713075-68713094 | None:intergenic | 50.0% | |
CCAATCAGGTGCAATCTGCA+AGG | + | chr7_1:68713080-68713099 | None:intergenic | 50.0% | |
CCTTGCAGATTGCACCTGAT+TGG | - | chr7_1:68713077-68713096 | Msa1033520:intron | 50.0% | |
TGCAGATTGCACCTGATTGG+AGG | - | chr7_1:68713080-68713099 | Msa1033520:intron | 50.0% | |
! | ACAGCTGCAGGGCTTTTAGT+TGG | - | chr7_1:68713244-68713263 | Msa1033520:intron | 50.0% |
!! | TGGTGTCATTGCTGCAGCAT+TGG | - | chr7_1:68713264-68713283 | Msa1033520:intron | 50.0% |
CGCCGGTAAAGAAGTTTCCG+AGG | + | chr7_1:68710485-68710504 | None:intergenic | 55.0% | |
TGACATCACGGTCGCACCAA+GGG | + | chr7_1:68710518-68710537 | None:intergenic | 55.0% | |
ATGACATCACGGTCGCACCA+AGG | + | chr7_1:68710519-68710538 | None:intergenic | 55.0% | |
! | CCACTTCGGTGGCGTTTTGA+AGG | + | chr7_1:68711433-68711452 | None:intergenic | 55.0% |
CCTTCAAAACGCCACCGAAG+TGG | - | chr7_1:68711430-68711449 | Msa1033520:intron | 55.0% | |
CAATGACCCCAGAGCCACTT+CGG | + | chr7_1:68711447-68711466 | None:intergenic | 55.0% | |
CAAGAAAGGAGGGACTGCAG+TGG | + | chr7_1:68711724-68711743 | None:intergenic | 55.0% | |
GATTGCACCTGATTGGAGGC+AGG | - | chr7_1:68713084-68713103 | Msa1033520:intron | 55.0% | |
GACAATGCCTGCCTCCAATC+AGG | + | chr7_1:68713094-68713113 | None:intergenic | 55.0% | |
GGCTTGTGTGCTCATGCAGA+TGG | - | chr7_1:68713196-68713215 | Msa1033520:intron | 55.0% | |
GCATCACTGCAACAGCTGCA+GGG | - | chr7_1:68713233-68713252 | Msa1033520:intron | 55.0% | |
AAACGCCACCGAAGTGGCTC+TGG | - | chr7_1:68711436-68711455 | Msa1033520:intron | 60.0% | |
AACGCCACCGAAGTGGCTCT+GGG | - | chr7_1:68711437-68711456 | Msa1033520:intron | 60.0% | |
TCCTAGGAGTCGGCAGCTTC+TGG | - | chr7_1:68711936-68711955 | Msa1033520:CDS | 60.0% | |
!! | TCCAGAAGCTGCCGACTCCT+AGG | + | chr7_1:68711940-68711959 | None:intergenic | 60.0% |
GGCATCACTGCAACAGCTGC+AGG | - | chr7_1:68713232-68713251 | Msa1033520:intron | 60.0% | |
CCAAGGGATCTGATCGCCGC+CGG | + | chr7_1:68710502-68710521 | None:intergenic | 65.0% | |
! | ACGCCACCGAAGTGGCTCTG+GGG | - | chr7_1:68711438-68711457 | Msa1033520:intron | 65.0% |
TGACCCCAGAGCCACTTCGG+TGG | + | chr7_1:68711444-68711463 | None:intergenic | 65.0% | |
ACTGCAGTGGCCCTAAGGCG+AGG | + | chr7_1:68711711-68711730 | None:intergenic | 65.0% | |
GAGGGACTGCAGTGGCCCTA+AGG | + | chr7_1:68711716-68711735 | None:intergenic | 65.0% | |
CCGGCGGCGATCAGATCCCT+TGG | - | chr7_1:68710499-68710518 | Msa1033520:three_prime_UTR | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 68710329 | 68713576 | 68710329 | ID=Msa1033520;Name=Msa1033520 |
chr7_1 | mRNA | 68710329 | 68713576 | 68710329 | ID=Msa1033520-mRNA-1;Parent=Msa1033520;Name=Msa1033520-mRNA-1;_AED=0.09;_eAED=0.09;_QI=121|1|1|1|1|1|5|276|167 |
chr7_1 | exon | 68710329 | 68710690 | 68710329 | ID=Msa1033520-mRNA-1:exon:16105;Parent=Msa1033520-mRNA-1 |
chr7_1 | exon | 68710757 | 68710820 | 68710757 | ID=Msa1033520-mRNA-1:exon:16104;Parent=Msa1033520-mRNA-1 |
chr7_1 | exon | 68711933 | 68712054 | 68711933 | ID=Msa1033520-mRNA-1:exon:16103;Parent=Msa1033520-mRNA-1 |
chr7_1 | exon | 68712878 | 68713016 | 68712878 | ID=Msa1033520-mRNA-1:exon:16102;Parent=Msa1033520-mRNA-1 |
chr7_1 | exon | 68713363 | 68713576 | 68713363 | ID=Msa1033520-mRNA-1:exon:16101;Parent=Msa1033520-mRNA-1 |
chr7_1 | five_prime_UTR | 68713456 | 68713576 | 68713456 | ID=Msa1033520-mRNA-1:five_prime_utr;Parent=Msa1033520-mRNA-1 |
chr7_1 | CDS | 68713363 | 68713455 | 68713363 | ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1 |
chr7_1 | CDS | 68712878 | 68713016 | 68712878 | ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1 |
chr7_1 | CDS | 68711933 | 68712054 | 68711933 | ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1 |
chr7_1 | CDS | 68710757 | 68710820 | 68710757 | ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1 |
chr7_1 | CDS | 68710605 | 68710690 | 68710605 | ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1 |
chr7_1 | three_prime_UTR | 68710329 | 68710604 | 68710329 | ID=Msa1033520-mRNA-1:three_prime_utr;Parent=Msa1033520-mRNA-1 |
Gene Sequence |
Protein sequence |