AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033520 MtrunA17_Chr7g0256481 98.802 167 2 0 1 167 1 167 6.94e-122 340
Msa1033520 MtrunA17_Chr5g0442081 63.095 168 61 1 1 167 4 171 1.68e-75 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033520 AT3G57090.2 64.706 170 57 1 1 167 1 170 9.77e-80 234
Msa1033520 AT3G57090.1 64.706 170 57 1 1 167 1 170 9.77e-80 234
Msa1033520 AT5G12390.1 55.357 168 67 2 1 163 1 165 1.61e-63 193

Find 57 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATACATGCTTGGATAAT+TGG 0.162647 7_1:-68710581 Msa1033520:three_prime_UTR
TCCTAGGAGTCGGCAGCTTC+TGG 0.252357 7_1:-68711947 Msa1033520:CDS
AAAATTGTAGTTATCAAATA+AGG 0.270444 7_1:+68710504 None:intergenic
ATGTATAGATTCAATTCTTT+CGG 0.289178 7_1:+68710595 None:intergenic
TGTATAGATTCAATTCTTTC+GGG 0.299564 7_1:+68710596 None:intergenic
ATTATGATTCGCAGCTTCTT+TGG 0.302296 7_1:-68712046 Msa1033520:intron
GGAAAGTTACCTGTATTTCT+TGG 0.332467 7_1:+68713489 None:intergenic
GTAACTTTCCGTTGAGTTGC+AGG 0.337755 7_1:-68713476 Msa1033520:five_prime_UTR
TTCTTGCTGTTGGGTACTAC+AGG 0.348000 7_1:-68711981 Msa1033520:CDS
GGCATCACTGCAACAGCTGC+AGG 0.350680 7_1:-68710651 Msa1033520:CDS
AGCTTTATCTTCTTGCTGTT+GGG 0.356980 7_1:-68711990 Msa1033520:CDS
GCAGCTTCTGGAGCAATGTT+TGG 0.361994 7_1:-68711935 Msa1033520:CDS
TTATGATTCGCAGCTTCTTT+GGG 0.372741 7_1:-68712045 Msa1033520:intron
CCTTGCAGATTGCACCTGAT+TGG 0.393005 7_1:-68710806 Msa1033520:intron
CATGGGCACTTGTTCATTCA+AGG 0.399932 7_1:-68712918 Msa1033520:CDS
GCAGATGGTGTAATAGGAAT+TGG 0.406309 7_1:-68710672 Msa1033520:intron
AAGCTTTATCTTCTTGCTGT+TGG 0.416064 7_1:-68711991 Msa1033520:CDS
AGCTTCTCTCTTTGATGTAA+AGG 0.431754 7_1:+68712009 None:intergenic
GCTCATGCAGATGGTGTAAT+AGG 0.436512 7_1:-68710678 Msa1033520:intron
GACAATGCCTGCCTCCAATC+AGG 0.442415 7_1:+68710792 None:intergenic
GCTTCTGGAGCAATGTTTGG+AGG 0.445797 7_1:-68711932 Msa1033520:intron
TCCCTCGGAAACTTCTTTAC+CGG 0.457316 7_1:-68713403 Msa1033520:CDS
GAAGTTGCAGAGGCTTCTAA+TGG 0.471526 7_1:-68712982 Msa1033520:CDS
AAAAGTATAGAAATTAGAAA+TGG 0.474025 7_1:-68713560 None:intergenic
GGAAGCTTCTTTGAATCCCT+CGG 0.481996 7_1:-68713418 Msa1033520:CDS
TGCAGATTGCACCTGATTGG+AGG 0.488276 7_1:-68710803 Msa1033520:intron
TGGTGTCATTGCTGCAGCAT+TGG 0.513273 7_1:-68710619 Msa1033520:CDS
TCCAGAAGCTGCCGACTCCT+AGG 0.515588 7_1:+68711946 None:intergenic
TGATAGTTAACCGTCGTCGA+TGG 0.516268 7_1:-68713452 Msa1033520:exon
AGTAATTATACTTTCGAGCA+TGG 0.516555 7_1:+68712867 None:intergenic
CCGGCGGCGATCAGATCCCT+TGG 0.523323 7_1:-68713384 Msa1033520:CDS
AGAGCATAATGAGGTTGTCA+TGG 0.535428 7_1:-68712936 Msa1033520:CDS
ACAGGGCCACTGATTATCCT+AGG 0.539913 7_1:-68711963 Msa1033520:CDS
GAATTGAATCTATACATGCT+TGG 0.552208 7_1:-68710589 Msa1033520:exon
GTCGAAGAACGAATTGCAAA+GGG 0.553821 7_1:-68710756 Msa1033520:intron
GATTGCACCTGATTGGAGGC+AGG 0.564228 7_1:-68710799 Msa1033520:CDS
TCTTGCTGTTGGGTACTACA+GGG 0.572141 7_1:-68711980 Msa1033520:CDS
TAACTTTCCGTTGAGTTGCA+GGG 0.573150 7_1:-68713475 Msa1033520:five_prime_UTR
CCAAGGGATCTGATCGCCGC+CGG 0.574729 7_1:+68713384 None:intergenic
TAGTTAACCGTCGTCGATGG+AGG 0.589229 7_1:-68713449 Msa1033520:exon
GAGCATAATGAGGTTGTCAT+GGG 0.590973 7_1:-68712935 Msa1033520:CDS
AGTCGAAGAACGAATTGCAA+AGG 0.598958 7_1:-68710757 Msa1033520:CDS
CTGTGAAAGAGAAGTTGCAG+AGG 0.603501 7_1:-68712992 Msa1033520:CDS
GCATCACTGCAACAGCTGCA+GGG 0.604640 7_1:-68710650 Msa1033520:CDS
TGACATCACGGTCGCACCAA+GGG 0.605500 7_1:+68713368 None:intergenic
CCACTGATTATCCTAGGAGT+CGG 0.611803 7_1:-68711957 Msa1033520:CDS
CGCCGGTAAAGAAGTTTCCG+AGG 0.620017 7_1:+68713401 None:intergenic
GCCGGTAAAGAAGTTTCCGA+GGG 0.620980 7_1:+68713402 None:intergenic
ACTATCACCCTGCAACTCAA+CGG 0.626960 7_1:+68713468 None:intergenic
CTCGGAAACTTCTTTACCGG+CGG 0.628306 7_1:-68713400 Msa1033520:CDS
ATGACATCACGGTCGCACCA+AGG 0.644581 7_1:+68713367 None:intergenic
GTAAGAATGAGAGCATAATG+AGG 0.656100 7_1:-68712945 Msa1033520:CDS
TTTCGAGCATGGCAATCCCA+CGG 0.664812 7_1:+68712878 None:intergenic
AACAAGAAGATATTCACCGT+GGG 0.666532 7_1:-68712894 Msa1033520:CDS
AAGTTACAGAGATGACATCA+CGG 0.723970 7_1:+68713356 None:intergenic
CCGACTCCTAGGATAATCAG+TGG 0.729427 7_1:+68711957 None:intergenic
CAACAAGAAGATATTCACCG+TGG 0.736975 7_1:-68712895 Msa1033520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATATAAGAAAAAATATT+CGG + chr7_1:68711044-68711063 None:intergenic 10.0%
!! AAAATTGTAGTTATCAAATA+AGG + chr7_1:68713382-68713401 None:intergenic 15.0%
!!! AACAGATAATTTTAGTTTAA+TGG + chr7_1:68713537-68713556 None:intergenic 15.0%
!! TCAAAAAAGCTATTAATTTC+CGG + chr7_1:68710628-68710647 None:intergenic 20.0%
!!! ATTTTGATTTGTTTGAGTTT+AGG - chr7_1:68710748-68710767 Msa1033520:intron 20.0%
!!! TTTTGATTTGTTTGAGTTTA+GGG - chr7_1:68710749-68710768 Msa1033520:intron 20.0%
!! TTCTGATTATTATTCTGTAT+AGG - chr7_1:68711060-68711079 Msa1033520:intron 20.0%
!! AATCATATTCATATGTTCAT+TGG - chr7_1:68711138-68711157 Msa1033520:intron 20.0%
!! ATGCAATACAACTAAAATAA+TGG - chr7_1:68711406-68711425 Msa1033520:intron 20.0%
!! ATAATAATTATGGATGTACA+AGG + chr7_1:68711822-68711841 None:intergenic 20.0%
!!! TTTGTTTTGATTTTCTCTTT+GGG - chr7_1:68712093-68712112 Msa1033520:intron 20.0%
!! AACTAATTGTTGAAAAAACA+GGG + chr7_1:68712181-68712200 None:intergenic 20.0%
!! AAACAGTAATAAGAAAAAAC+AGG + chr7_1:68712807-68712826 None:intergenic 20.0%
!! TGGATCAAAATAAAATCAAT+GGG + chr7_1:68712864-68712883 None:intergenic 20.0%
!!! TCTTTTATCTCTAAATTTTG+AGG - chr7_1:68713046-68713065 Msa1033520:intron 20.0%
!! ATGTATAGATTCAATTCTTT+CGG + chr7_1:68713291-68713310 None:intergenic 20.0%
!!! TTTGCTTATTTTACTTTCAT+CGG - chr7_1:68713327-68713346 Msa1033520:intron 20.0%
!!! ACATTTGTTTTTTTACAAAC+GGG + chr7_1:68713470-68713489 None:intergenic 20.0%
!!! CACATTTGTTTTTTTACAAA+CGG + chr7_1:68713471-68713490 None:intergenic 20.0%
!!! GTTTTTTTTGTTGTGTGTTT+TGG + chr7_1:68710358-68710377 None:intergenic 25.0%
! TACAAAAAACCAAGAAATAC+AGG - chr7_1:68710385-68710404 Msa1033520:three_prime_UTR 25.0%
! AGAAATAACATGAATTGAGA+GGG + chr7_1:68710570-68710589 None:intergenic 25.0%
! AAGAAATAACATGAATTGAG+AGG + chr7_1:68710571-68710590 None:intergenic 25.0%
! CTCAAACAAATCAAAATTGA+GGG + chr7_1:68710745-68710764 None:intergenic 25.0%
! ACTCAAACAAATCAAAATTG+AGG + chr7_1:68710746-68710765 None:intergenic 25.0%
!! ATTTTCAATCTGGTTATGAA+AGG + chr7_1:68710777-68710796 None:intergenic 25.0%
!! ACCAGATTGAAAATTTTATC+TGG - chr7_1:68710783-68710802 Msa1033520:CDS 25.0%
!! CCAGATTGAAAATTTTATCT+GGG - chr7_1:68710784-68710803 Msa1033520:CDS 25.0%
!!! TTTTCATTGCATTGTTTTGA+AGG - chr7_1:68710867-68710886 Msa1033520:intron 25.0%
!!! TTTCATTGCATTGTTTTGAA+GGG - chr7_1:68710868-68710887 Msa1033520:intron 25.0%
! ATTATTCTGTATAGGTTCAT+TGG - chr7_1:68711068-68711087 Msa1033520:intron 25.0%
! CAAATTAATGTAACTTCTCT+TGG - chr7_1:68711293-68711312 Msa1033520:intron 25.0%
! AAAAAAACACATAGCAAGAA+AGG + chr7_1:68711738-68711757 None:intergenic 25.0%
!! TATATTTTTCTTGCCTTTTC+TGG - chr7_1:68712013-68712032 Msa1033520:CDS 25.0%
! TAACAATATGAACATACACT+GGG + chr7_1:68712064-68712083 None:intergenic 25.0%
!!! CTTTGTTTTGATTTTCTCTT+TGG - chr7_1:68712092-68712111 Msa1033520:intron 25.0%
! ACTAATTGTTGAAAAAACAG+GGG + chr7_1:68712180-68712199 None:intergenic 25.0%
! GAACTAATTGTTGAAAAAAC+AGG + chr7_1:68712182-68712201 None:intergenic 25.0%
! ATAACAAATTCCTTCAGAAA+CGG - chr7_1:68712500-68712519 Msa1033520:intron 25.0%
! TATAGAACACTATGATTCTT+CGG - chr7_1:68712689-68712708 Msa1033520:intron 25.0%
! GTGGATCAAAATAAAATCAA+TGG + chr7_1:68712865-68712884 None:intergenic 25.0%
! TATTCACAAATATCAGCATA+AGG + chr7_1:68712897-68712916 None:intergenic 25.0%
! ATCGCATTAACATTAACTAA+TGG - chr7_1:68713175-68713194 Msa1033520:intron 25.0%
! TGTATAGATTCAATTCTTTC+GGG + chr7_1:68713290-68713309 None:intergenic 25.0%
!! TATTTTCACTTATGTATGTG+CGG + chr7_1:68713437-68713456 None:intergenic 25.0%
! CCCAGATAAAATTTTCAATC+TGG + chr7_1:68710787-68710806 None:intergenic 30.0%
!! ATTTTATCTGGGATTATTGC+TGG - chr7_1:68710795-68710814 Msa1033520:CDS 30.0%
AGTAATTATACTTTCGAGCA+TGG + chr7_1:68711019-68711038 None:intergenic 30.0%
! TACATTAATTTGAGCACAAC+AGG + chr7_1:68711285-68711304 None:intergenic 30.0%
TATCACACAAACTTTAGTGT+AGG - chr7_1:68711483-68711502 Msa1033520:intron 30.0%
TTTACTAAATTAGCGTGTGA+AGG - chr7_1:68711520-68711539 Msa1033520:intron 30.0%
TTACTAAATTAGCGTGTGAA+GGG - chr7_1:68711521-68711540 Msa1033520:intron 30.0%
ACATCAGTCATATCTCTTTA+GGG + chr7_1:68711767-68711786 None:intergenic 30.0%
AACATCAGTCATATCTCTTT+AGG + chr7_1:68711768-68711787 None:intergenic 30.0%
TATTATGCCCTTTATATGCA+TGG - chr7_1:68711792-68711811 Msa1033520:intron 30.0%
GCTGCGAATCATAATAATTA+TGG + chr7_1:68711832-68711851 None:intergenic 30.0%
GTAACAATATGAACATACAC+TGG + chr7_1:68712065-68712084 None:intergenic 30.0%
GGAAAGAGATCTCAAATTAT+AGG + chr7_1:68712305-68712324 None:intergenic 30.0%
TGATAGCATCTTGAATAACA+AGG + chr7_1:68712326-68712345 None:intergenic 30.0%
TATTCAAGATGCTATCAGTT+AGG - chr7_1:68712329-68712348 Msa1033520:intron 30.0%
ACTGCTAATAACAAAGGAAA+GGG + chr7_1:68712357-68712376 None:intergenic 30.0%
TTTGTGACTGCTAATAACAA+AGG + chr7_1:68712363-68712382 None:intergenic 30.0%
! TTGTTATTAGCAGTCACAAA+AGG - chr7_1:68712363-68712382 Msa1033520:intron 30.0%
!! AAGGAATTTGTTATCCACAA+AGG + chr7_1:68712494-68712513 None:intergenic 30.0%
!! AACGGTTTTATATCGTTGAT+TGG - chr7_1:68712518-68712537 Msa1033520:intron 30.0%
!! GTTTTATATCGTTGATTGGT+CGG - chr7_1:68712522-68712541 Msa1033520:intron 30.0%
!! TTTTAGAAGTAGATCTGTCA+AGG - chr7_1:68712642-68712661 Msa1033520:intron 30.0%
ATAGTGTTCTATAGGAAATG+TGG + chr7_1:68712682-68712701 None:intergenic 30.0%
GAAGAATCATAGTGTTCTAT+AGG + chr7_1:68712690-68712709 None:intergenic 30.0%
AAAAAACAGGCTCTCTAATA+TGG + chr7_1:68712794-68712813 None:intergenic 30.0%
TATTACTGTTTGTATGTGAG+TGG - chr7_1:68712816-68712835 Msa1033520:intron 30.0%
ATTACTGTTTGTATGTGAGT+GGG - chr7_1:68712817-68712836 Msa1033520:intron 30.0%
! TTCTTCGACTGTTTTCTTAA+GGG + chr7_1:68713116-68713135 None:intergenic 30.0%
GAATTGAATCTATACATGCT+TGG - chr7_1:68713294-68713313 Msa1033520:intron 30.0%
TCTATACATGCTTGGATAAT+TGG - chr7_1:68713302-68713321 Msa1033520:intron 30.0%
!! GTAAACATTTTGATGTCAAC+AGG - chr7_1:68713349-68713368 Msa1033520:intron 30.0%
GGAAAGTTACCTGTATTTCT+TGG + chr7_1:68710397-68710416 None:intergenic 35.0%
AAGTTACAGAGATGACATCA+CGG + chr7_1:68710530-68710549 None:intergenic 35.0%
ACTCAGAATTTCAATTGTGC+CGG - chr7_1:68710606-68710625 Msa1033520:CDS 35.0%
! AAAATTGAGGGCGCAAAATA+TGG + chr7_1:68710733-68710752 None:intergenic 35.0%
! GTAAGAATGAGAGCATAATG+AGG - chr7_1:68710938-68710957 Msa1033520:intron 35.0%
AACAAGAAGATATTCACCGT+GGG - chr7_1:68710989-68711008 Msa1033520:intron 35.0%
ATCACAAGACGTAGAATAGA+CGG + chr7_1:68711169-68711188 None:intergenic 35.0%
TTCTACGTCTTGTGATTTCT+TGG - chr7_1:68711173-68711192 Msa1033520:intron 35.0%
TCAACGCTATATTGCATACT+CGG - chr7_1:68711200-68711219 Msa1033520:intron 35.0%
ACAACTAGCAATGAAGACAT+TGG + chr7_1:68711331-68711350 None:intergenic 35.0%
TTGGAATTATTCATTCAGGC+TGG + chr7_1:68711366-68711385 None:intergenic 35.0%
GCAGTTGGAATTATTCATTC+AGG + chr7_1:68711370-68711389 None:intergenic 35.0%
ACAAACTTTAGTGTAGGAGT+AGG - chr7_1:68711489-68711508 Msa1033520:intron 35.0%
TCAAGCTGGTCCAATTATAA+TGG + chr7_1:68711549-68711568 None:intergenic 35.0%
AGCTTGAGAGGAAAATCTAA+CGG - chr7_1:68711562-68711581 Msa1033520:intron 35.0%
AAACACATAGCAAGAAAGGA+GGG + chr7_1:68711734-68711753 None:intergenic 35.0%
AAAACACATAGCAAGAAAGG+AGG + chr7_1:68711735-68711754 None:intergenic 35.0%
ATTATGATTCGCAGCTTCTT+TGG - chr7_1:68711837-68711856 Msa1033520:intron 35.0%
TTATGATTCGCAGCTTCTTT+GGG - chr7_1:68711838-68711857 Msa1033520:intron 35.0%
AGCTTCTCTCTTTGATGTAA+AGG + chr7_1:68711877-68711896 None:intergenic 35.0%
! AAGCTTTATCTTCTTGCTGT+TGG - chr7_1:68711892-68711911 Msa1033520:intron 35.0%
!! AGCTTTATCTTCTTGCTGTT+GGG - chr7_1:68711893-68711912 Msa1033520:intron 35.0%
TGGATATTGGATACTTCACA+AGG + chr7_1:68712127-68712146 None:intergenic 35.0%
GATACATTGTCTATGTGATG+TGG - chr7_1:68712220-68712239 Msa1033520:intron 35.0%
GACTGCTAATAACAAAGGAA+AGG + chr7_1:68712358-68712377 None:intergenic 35.0%
TTTAATAAACCCAGCTGGAT+TGG - chr7_1:68712389-68712408 Msa1033520:intron 35.0%
CTTCTTAGTGAGAGGTTTAT+TGG - chr7_1:68712463-68712482 Msa1033520:intron 35.0%
GTTTATTGGACAATCCTTTG+TGG - chr7_1:68712477-68712496 Msa1033520:intron 35.0%
CGATATAAAACCGTTTCTGA+AGG + chr7_1:68712513-68712532 None:intergenic 35.0%
TATAGGAAATGTGGAGAATC+AGG + chr7_1:68712673-68712692 None:intergenic 35.0%
TCCATGCCTGTTATTACATA+TGG - chr7_1:68712714-68712733 Msa1033520:intron 35.0%
CCATGCCTGTTATTACATAT+GGG - chr7_1:68712715-68712734 Msa1033520:intron 35.0%
GCTTTCCCATATGTAATAAC+AGG + chr7_1:68712723-68712742 None:intergenic 35.0%
AGTCCTTTGTCTAACATGAA+CGG - chr7_1:68713008-68713027 Msa1033520:intron 35.0%
! GTTCTTCGACTGTTTTCTTA+AGG + chr7_1:68713117-68713136 None:intergenic 35.0%
! TAACTTTCCGTTGAGTTGCA+GGG - chr7_1:68710408-68710427 Msa1033520:three_prime_UTR 40.0%
AGAGGGATAAGAGAAAGAAG+AGG + chr7_1:68710553-68710572 None:intergenic 40.0%
! ATCTGGGATTATTGCTGGAA+TGG - chr7_1:68710800-68710819 Msa1033520:CDS 40.0%
AGAGCATAATGAGGTTGTCA+TGG - chr7_1:68710947-68710966 Msa1033520:intron 40.0%
GAGCATAATGAGGTTGTCAT+GGG - chr7_1:68710948-68710967 Msa1033520:intron 40.0%
CAACAAGAAGATATTCACCG+TGG - chr7_1:68710988-68711007 Msa1033520:intron 40.0%
TCACAAGACGTAGAATAGAC+GGG + chr7_1:68711168-68711187 None:intergenic 40.0%
TAGCAGCTATATGTGACAGA+AGG + chr7_1:68711247-68711266 None:intergenic 40.0%
! TGTGTTACTCTTGATGCAGT+TGG + chr7_1:68711385-68711404 None:intergenic 40.0%
ACTTTAGTGTAGGAGTAGGA+CGG - chr7_1:68711493-68711512 Msa1033520:intron 40.0%
!! GTGAAGGGCACCATTATAAT+TGG - chr7_1:68711536-68711555 Msa1033520:intron 40.0%
TATAATTGGACCAGCTTGAG+AGG - chr7_1:68711550-68711569 Msa1033520:intron 40.0%
! GTTAGATTTTCCTCTCAAGC+TGG + chr7_1:68711563-68711582 None:intergenic 40.0%
GTTGGAGGAAGTTTAGATCA+TGG + chr7_1:68711598-68711617 None:intergenic 40.0%
AGGTCAGCCATGCATATAAA+GGG + chr7_1:68711802-68711821 None:intergenic 40.0%
AAGGTCAGCCATGCATATAA+AGG + chr7_1:68711803-68711822 None:intergenic 40.0%
TGATGATCTGACACCAGAAA+AGG + chr7_1:68712029-68712048 None:intergenic 40.0%
AGAGTCAACACAGTGGATAT+TGG + chr7_1:68712140-68712159 None:intergenic 40.0%
! TGTGATGTGGATGCTTTTGT+TGG - chr7_1:68712233-68712252 Msa1033520:intron 40.0%
! GTGATGTGGATGCTTTTGTT+GGG - chr7_1:68712234-68712253 Msa1033520:intron 40.0%
! GGACTTTTAATAAACCCAGC+TGG - chr7_1:68712384-68712403 Msa1033520:intron 40.0%
TGGCTTAGTAGAAACATGCT+AGG - chr7_1:68712409-68712428 Msa1033520:intron 40.0%
CAGACATACTTCTTAGTGAG+AGG - chr7_1:68712455-68712474 Msa1033520:intron 40.0%
! ATATCGTTGATTGGTCGGTA+TGG - chr7_1:68712527-68712546 Msa1033520:intron 40.0%
ACGTGATTGTTTACGAAAGC+AGG - chr7_1:68712551-68712570 Msa1033520:intron 40.0%
TGATTGTTTACGAAAGCAGG+AGG - chr7_1:68712554-68712573 Msa1033520:intron 40.0%
CCCATATGTAATAACAGGCA+TGG + chr7_1:68712718-68712737 None:intergenic 40.0%
CAGCATAAGGTCATTAGTAG+TGG + chr7_1:68712884-68712903 None:intergenic 40.0%
GAACCGTTCATGTTAGACAA+AGG + chr7_1:68713014-68713033 None:intergenic 40.0%
AGTCGAAGAACGAATTGCAA+AGG - chr7_1:68713126-68713145 Msa1033520:intron 40.0%
GTCGAAGAACGAATTGCAAA+GGG - chr7_1:68713127-68713146 Msa1033520:intron 40.0%
GCAGATGGTGTAATAGGAAT+TGG - chr7_1:68713211-68713230 Msa1033520:intron 40.0%
! GTAACTTTCCGTTGAGTTGC+AGG - chr7_1:68710407-68710426 Msa1033520:three_prime_UTR 45.0%
ACTATCACCCTGCAACTCAA+CGG + chr7_1:68710418-68710437 None:intergenic 45.0%
TGATAGTTAACCGTCGTCGA+TGG - chr7_1:68710431-68710450 Msa1033520:three_prime_UTR 45.0%
!! ATTTTAGCCTCCATCGACGA+CGG + chr7_1:68710444-68710463 None:intergenic 45.0%
TCGTCGATGGAGGCTAAAAT+CGG - chr7_1:68710444-68710463 Msa1033520:three_prime_UTR 45.0%
GGAAGCTTCTTTGAATCCCT+CGG - chr7_1:68710465-68710484 Msa1033520:three_prime_UTR 45.0%
TCCCTCGGAAACTTCTTTAC+CGG - chr7_1:68710480-68710499 Msa1033520:three_prime_UTR 45.0%
CTGTGAAAGAGAAGTTGCAG+AGG - chr7_1:68710891-68710910 Msa1033520:intron 45.0%
GAAGTTGCAGAGGCTTCTAA+TGG - chr7_1:68710901-68710920 Msa1033520:intron 45.0%
CATGGGCACTTGTTCATTCA+AGG - chr7_1:68710965-68710984 Msa1033520:intron 45.0%
AGAAGTCTGCTTTGCATCGT+TGG + chr7_1:68711616-68711635 None:intergenic 45.0%
! AGATCAGCCTGAGATGCTTT+TGG - chr7_1:68711667-68711686 Msa1033520:intron 45.0%
!! ATTCACGCCAAAAGCATCTC+AGG + chr7_1:68711677-68711696 None:intergenic 45.0%
TTAGACAACTTCCTCGCCTT+AGG - chr7_1:68711697-68711716 Msa1033520:intron 45.0%
TAGACAACTTCCTCGCCTTA+GGG - chr7_1:68711698-68711717 Msa1033520:intron 45.0%
!! TTCTTGCTGTTGGGTACTAC+AGG - chr7_1:68711902-68711921 Msa1033520:intron 45.0%
!! TCTTGCTGTTGGGTACTACA+GGG - chr7_1:68711903-68711922 Msa1033520:intron 45.0%
! CCACTGATTATCCTAGGAGT+CGG - chr7_1:68711926-68711945 Msa1033520:intron 45.0%
TCTACTAAGCCAATCCAGCT+GGG + chr7_1:68712401-68712420 None:intergenic 45.0%
TTCTACTAAGCCAATCCAGC+TGG + chr7_1:68712402-68712421 None:intergenic 45.0%
ATGGGAAAGCTGACAACACT+AGG - chr7_1:68712733-68712752 Msa1033520:intron 45.0%
GCTCATGCAGATGGTGTAAT+AGG - chr7_1:68713205-68713224 Msa1033520:intron 45.0%
!!! TTAATATTTTTTTATTTGTT+AGG - chr7_1:68713401-68713420 Msa1033520:CDS 5.0%
TAGTTAACCGTCGTCGATGG+AGG - chr7_1:68710434-68710453 Msa1033520:three_prime_UTR 50.0%
GCCGGTAAAGAAGTTTCCGA+GGG + chr7_1:68710484-68710503 None:intergenic 50.0%
CTCGGAAACTTCTTTACCGG+CGG - chr7_1:68710483-68710502 Msa1033520:three_prime_UTR 50.0%
TTTCGAGCATGGCAATCCCA+CGG + chr7_1:68711008-68711027 None:intergenic 50.0%
TTAGTGTAGGAGTAGGACGG+TGG - chr7_1:68711496-68711515 Msa1033520:intron 50.0%
AGTCTGCTTTGCATCGTTGG+AGG + chr7_1:68711613-68711632 None:intergenic 50.0%
! ACAGGGCCACTGATTATCCT+AGG - chr7_1:68711920-68711939 Msa1033520:intron 50.0%
CCGACTCCTAGGATAATCAG+TGG + chr7_1:68711929-68711948 None:intergenic 50.0%
!! GCAGCTTCTGGAGCAATGTT+TGG - chr7_1:68711948-68711967 Msa1033520:CDS 50.0%
!! GCTTCTGGAGCAATGTTTGG+AGG - chr7_1:68711951-68711970 Msa1033520:CDS 50.0%
! CCAGTCTAGAGTCAACACAG+TGG + chr7_1:68712147-68712166 None:intergenic 50.0%
!! CCACTGTGTTGACTCTAGAC+TGG - chr7_1:68712144-68712163 Msa1033520:intron 50.0%
! TGGATGCTTTTGTTGGGCGT+TGG - chr7_1:68712240-68712259 Msa1033520:intron 50.0%
! GGATGCTTTTGTTGGGCGTT+GGG - chr7_1:68712241-68712260 Msa1033520:intron 50.0%
AACATGCTAGGTCTGCGAGT+AGG - chr7_1:68712421-68712440 Msa1033520:intron 50.0%
CGAAAGCAGGAGGATACATG+TGG - chr7_1:68712564-68712583 Msa1033520:intron 50.0%
CAGGTGCAATCTGCAAGGAT+AGG + chr7_1:68713075-68713094 None:intergenic 50.0%
CCAATCAGGTGCAATCTGCA+AGG + chr7_1:68713080-68713099 None:intergenic 50.0%
CCTTGCAGATTGCACCTGAT+TGG - chr7_1:68713077-68713096 Msa1033520:intron 50.0%
TGCAGATTGCACCTGATTGG+AGG - chr7_1:68713080-68713099 Msa1033520:intron 50.0%
! ACAGCTGCAGGGCTTTTAGT+TGG - chr7_1:68713244-68713263 Msa1033520:intron 50.0%
!! TGGTGTCATTGCTGCAGCAT+TGG - chr7_1:68713264-68713283 Msa1033520:intron 50.0%
CGCCGGTAAAGAAGTTTCCG+AGG + chr7_1:68710485-68710504 None:intergenic 55.0%
TGACATCACGGTCGCACCAA+GGG + chr7_1:68710518-68710537 None:intergenic 55.0%
ATGACATCACGGTCGCACCA+AGG + chr7_1:68710519-68710538 None:intergenic 55.0%
! CCACTTCGGTGGCGTTTTGA+AGG + chr7_1:68711433-68711452 None:intergenic 55.0%
CCTTCAAAACGCCACCGAAG+TGG - chr7_1:68711430-68711449 Msa1033520:intron 55.0%
CAATGACCCCAGAGCCACTT+CGG + chr7_1:68711447-68711466 None:intergenic 55.0%
CAAGAAAGGAGGGACTGCAG+TGG + chr7_1:68711724-68711743 None:intergenic 55.0%
GATTGCACCTGATTGGAGGC+AGG - chr7_1:68713084-68713103 Msa1033520:intron 55.0%
GACAATGCCTGCCTCCAATC+AGG + chr7_1:68713094-68713113 None:intergenic 55.0%
GGCTTGTGTGCTCATGCAGA+TGG - chr7_1:68713196-68713215 Msa1033520:intron 55.0%
GCATCACTGCAACAGCTGCA+GGG - chr7_1:68713233-68713252 Msa1033520:intron 55.0%
AAACGCCACCGAAGTGGCTC+TGG - chr7_1:68711436-68711455 Msa1033520:intron 60.0%
AACGCCACCGAAGTGGCTCT+GGG - chr7_1:68711437-68711456 Msa1033520:intron 60.0%
TCCTAGGAGTCGGCAGCTTC+TGG - chr7_1:68711936-68711955 Msa1033520:CDS 60.0%
!! TCCAGAAGCTGCCGACTCCT+AGG + chr7_1:68711940-68711959 None:intergenic 60.0%
GGCATCACTGCAACAGCTGC+AGG - chr7_1:68713232-68713251 Msa1033520:intron 60.0%
CCAAGGGATCTGATCGCCGC+CGG + chr7_1:68710502-68710521 None:intergenic 65.0%
! ACGCCACCGAAGTGGCTCTG+GGG - chr7_1:68711438-68711457 Msa1033520:intron 65.0%
TGACCCCAGAGCCACTTCGG+TGG + chr7_1:68711444-68711463 None:intergenic 65.0%
ACTGCAGTGGCCCTAAGGCG+AGG + chr7_1:68711711-68711730 None:intergenic 65.0%
GAGGGACTGCAGTGGCCCTA+AGG + chr7_1:68711716-68711735 None:intergenic 65.0%
CCGGCGGCGATCAGATCCCT+TGG - chr7_1:68710499-68710518 Msa1033520:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68710329 68713576 68710329 ID=Msa1033520;Name=Msa1033520
chr7_1 mRNA 68710329 68713576 68710329 ID=Msa1033520-mRNA-1;Parent=Msa1033520;Name=Msa1033520-mRNA-1;_AED=0.09;_eAED=0.09;_QI=121|1|1|1|1|1|5|276|167
chr7_1 exon 68710329 68710690 68710329 ID=Msa1033520-mRNA-1:exon:16105;Parent=Msa1033520-mRNA-1
chr7_1 exon 68710757 68710820 68710757 ID=Msa1033520-mRNA-1:exon:16104;Parent=Msa1033520-mRNA-1
chr7_1 exon 68711933 68712054 68711933 ID=Msa1033520-mRNA-1:exon:16103;Parent=Msa1033520-mRNA-1
chr7_1 exon 68712878 68713016 68712878 ID=Msa1033520-mRNA-1:exon:16102;Parent=Msa1033520-mRNA-1
chr7_1 exon 68713363 68713576 68713363 ID=Msa1033520-mRNA-1:exon:16101;Parent=Msa1033520-mRNA-1
chr7_1 five_prime_UTR 68713456 68713576 68713456 ID=Msa1033520-mRNA-1:five_prime_utr;Parent=Msa1033520-mRNA-1
chr7_1 CDS 68713363 68713455 68713363 ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1
chr7_1 CDS 68712878 68713016 68712878 ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1
chr7_1 CDS 68711933 68712054 68711933 ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1
chr7_1 CDS 68710757 68710820 68710757 ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1
chr7_1 CDS 68710605 68710690 68710605 ID=Msa1033520-mRNA-1:cds;Parent=Msa1033520-mRNA-1
chr7_1 three_prime_UTR 68710329 68710604 68710329 ID=Msa1033520-mRNA-1:three_prime_utr;Parent=Msa1033520-mRNA-1
Gene Sequence

>Msa1033520

ATGGAGGCTAAAATCGGAAGCTTCTTTGAATCCCTCGGAAACTTCTTTACCGGCGGCGATCAGATCCCTTGGTGCGACCGTGATGTCATCTCTGGCTGTGAAAGAGAAGTTGCAGAGGCTTCTAATGGTGACTCTGATGAGCGTAAGAATGAGAGCATAATGAGGTTGTCATGGGCACTTGTTCATTCAAGGCAACAAGAAGATATTCACCGTGGGATTGCCATGCTCGAAACTTCTTTGGGCAATGATAGAAGTCCTTTACATCAAAGAGAGAAGCTTTATCTTCTTGCTGTTGGGTACTACAGGGCCACTGATTATCCTAGGAGTCGGCAGCTTCTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCATTGTCCCTTAAGAAAACAGTCGAAGAACGAATTGCAAAGGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGCAGGGCTTTTAGTTGGTGTCATTGCTGCAGCATTGGCCCGAAAGAATTGA

Protein sequence

>Msa1033520

MEAKIGSFFESLGNFFTGGDQIPWCDRDVISGCEREVAEASNGDSDERKNESIMRLSWALVHSRQQEDIHRGIAMLETSLGNDRSPLHQREKLYLLAVGYYRATDYPRSRQLLEQCLEIAPDWRQALSLKKTVEERIAKDGVIGIGITATAAGLLVGVIAAALARKN*