Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844410 | KAF7113880.1 | 41.593 | 113 | 60 | 3 | 5 | 116 | 4 | 111 | 1.64e-22 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844410 | sp|Q8LGG0|FKB12_ARATH | 37.168 | 113 | 65 | 2 | 5 | 116 | 4 | 111 | 4.28e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844410 | A0A834FXE7 | 41.593 | 113 | 60 | 3 | 5 | 116 | 4 | 111 | 7.82e-23 | 95.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011660 | Msa0844410 | -0.835359 | 1.756870e-56 | -8.615850e-47 |
| Msa0062170 | Msa0844410 | 0.800123 | 1.670780e-48 | -8.615850e-47 |
| Msa0632740 | Msa0844410 | 0.802727 | 4.891537e-49 | -8.615850e-47 |
| Msa0680200 | Msa0844410 | 0.821495 | 3.916319e-53 | -8.615850e-47 |
| Msa0701010 | Msa0844410 | 0.809509 | 1.827169e-50 | -8.615850e-47 |
| Msa0718100 | Msa0844410 | 0.800780 | 1.227248e-48 | -8.615850e-47 |
| Msa0747100 | Msa0844410 | 0.801474 | 8.853663e-49 | -8.615850e-47 |
| Msa0750650 | Msa0844410 | 0.851330 | 9.524206e-61 | -8.615850e-47 |
| Msa0756460 | Msa0844410 | 0.806646 | 7.435312e-50 | -8.615850e-47 |
| Msa0768290 | Msa0844410 | 0.838584 | 2.636889e-57 | -8.615850e-47 |
| Msa0768370 | Msa0844410 | 0.802601 | 5.192992e-49 | -8.615850e-47 |
| Msa0832040 | Msa0844410 | 0.810320 | 1.222526e-50 | -8.615850e-47 |
| Msa0150840 | Msa0844410 | 0.855865 | 4.736035e-62 | -8.615850e-47 |
| Msa0166560 | Msa0844410 | 0.830885 | 2.281778e-55 | -8.615850e-47 |
| Msa0180500 | Msa0844410 | 0.850900 | 1.259196e-60 | -8.615850e-47 |
| Msa0234270 | Msa0844410 | 0.808801 | 2.590210e-50 | -8.615850e-47 |
| Msa0394280 | Msa0844410 | 0.802553 | 5.312193e-49 | -8.615850e-47 |
| Msa0395790 | Msa0844410 | 0.815197 | 1.045698e-51 | -8.615850e-47 |
| Msa0424320 | Msa0844410 | 0.809362 | 1.964953e-50 | -8.615850e-47 |
| Msa0425790 | Msa0844410 | 0.805514 | 1.286967e-49 | -8.615850e-47 |
| Msa0275010 | Msa0844410 | 0.810767 | 9.788179e-51 | -8.615850e-47 |
| Msa0278110 | Msa0844410 | 0.807800 | 4.233804e-50 | -8.615850e-47 |
| Msa0338490 | Msa0844410 | 0.832979 | 6.938674e-56 | -8.615850e-47 |
| Msa0359030 | Msa0844410 | 0.804639 | 1.960980e-49 | -8.615850e-47 |
| Msa0523940 | Msa0844410 | 0.829630 | 4.622276e-55 | -8.615850e-47 |
| Msa0529040 | Msa0844410 | 0.810362 | 1.197164e-50 | -8.615850e-47 |
| Msa0532990 | Msa0844410 | 0.806292 | 8.829076e-50 | -8.615850e-47 |
| Msa0539530 | Msa0844410 | -0.820791 | 5.692303e-53 | -8.615850e-47 |
| Msa0545700 | Msa0844410 | 0.811702 | 6.135390e-51 | -8.615850e-47 |
| Msa0594660 | Msa0844410 | 0.802929 | 4.442554e-49 | -8.615850e-47 |
| Msa0844410 | Msa0844420 | 0.894877 | 1.630521e-75 | -8.615850e-47 |
| Msa0844410 | Msa0844440 | 0.832196 | 1.085121e-55 | -8.615850e-47 |
| Msa0844410 | Msa0844450 | 0.848452 | 6.074808e-60 | -8.615850e-47 |
| Msa0844410 | Msa0844460 | 0.820599 | 6.298244e-53 | -8.615850e-47 |
| Msa0844410 | Msa0844470 | 0.990898 | 7.109716e-185 | -8.615850e-47 |
| Msa0844410 | Msa0844480 | 0.825813 | 3.820517e-54 | -8.615850e-47 |
| Msa0844410 | Msa0844490 | 0.887444 | 1.418983e-72 | -8.615850e-47 |
| Msa0844410 | Msa0844500 | 0.828409 | 9.134483e-55 | -8.615850e-47 |
| Msa0844410 | Msa0844510 | 0.806462 | 8.131715e-50 | -8.615850e-47 |
| Msa0844410 | Msa0877250 | 0.802581 | 5.241296e-49 | -8.615850e-47 |
| Msa0844410 | Msa0888130 | 0.821984 | 3.018201e-53 | -8.615850e-47 |
| Msa0844410 | Msa0890310 | 0.812667 | 3.778818e-51 | -8.615850e-47 |
| Msa0844410 | Msa0903620 | 0.833659 | 4.698025e-56 | -8.615850e-47 |
| Msa0844410 | Msa0914760 | 0.819857 | 9.318266e-53 | -8.615850e-47 |
| Msa0844410 | Msa0936300 | 0.842813 | 2.055752e-58 | -8.615850e-47 |
| Msa0844410 | Msa0940520 | 0.834530 | 2.842205e-56 | -8.615850e-47 |
| Msa0844410 | Msa0952720 | 0.801478 | 8.835759e-49 | -8.615850e-47 |
| Msa0844410 | Msa0953120 | 0.814477 | 1.510281e-51 | -8.615850e-47 |
| Msa0844410 | Msa0966750 | 0.846177 | 2.558866e-59 | -8.615850e-47 |
| Msa0844410 | Msa0967380 | 0.818099 | 2.338974e-52 | -8.615850e-47 |
| Msa0844410 | Msa0973100 | 0.828304 | 9.684378e-55 | -8.615850e-47 |
| Msa0844410 | Msa1000860 | 0.801401 | 9.162354e-49 | -8.615850e-47 |
| Msa0844410 | Msa1108690 | 0.817886 | 2.613663e-52 | -8.615850e-47 |
| Msa0844410 | Msa1119930 | 0.805224 | 1.480025e-49 | -8.615850e-47 |
| Msa0844410 | Msa1121490 | 0.800357 | 1.497152e-48 | -8.615850e-47 |
| Msa0844410 | Msa1124410 | 0.811475 | 6.873733e-51 | -8.615850e-47 |
| Msa0844410 | Msa1137570 | 0.821412 | 4.093550e-53 | -8.615850e-47 |
| Msa0844410 | Msa1178180 | 0.824349 | 8.470776e-54 | -8.615850e-47 |
| Msa0844410 | Msa1227730 | 0.835570 | 1.553826e-56 | -8.615850e-47 |
| Msa0844410 | Msa1237020 | 0.821138 | 4.736124e-53 | -8.615850e-47 |
| Msa0844410 | Msa1286800 | 0.827474 | 1.533308e-54 | -8.615850e-47 |
| Msa0844410 | Msa1287190 | 0.824906 | 6.262744e-54 | -8.615850e-47 |
| Msa0844410 | Msa1313320 | 0.804732 | 1.875295e-49 | -8.615850e-47 |
| Msa0844410 | Msa1350680 | 0.817240 | 3.653258e-52 | -8.615850e-47 |
| Msa0844410 | Msa1366970 | 0.831753 | 1.395910e-55 | -8.615850e-47 |
| Msa0844410 | Msa1412530 | 0.834293 | 3.258543e-56 | -8.615850e-47 |
| Msa0844410 | Msa1458750 | 0.802052 | 6.735378e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844410 | MtrunA17_Chr2g0279511 | 36.937 | 111 | 64 | 3 | 5 | 114 | 4 | 109 | 8.39e-21 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0844410 | AT5G64350.1 | 37.168 | 113 | 65 | 2 | 5 | 116 | 4 | 111 | 4.35e-22 | 84.3 |
Find 51 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTGATCAACATAATT+TGG | 0.160239 | 5_4:+22843482 | Msa0844410:three_prime_UTR |
| AGTTTGCTCCAAACGATATC+TGG | 0.296710 | 5_4:-22840351 | None:intergenic |
| AAAGGTTTCGCACGTGTTCC+AGG | 0.355891 | 5_4:-22841716 | None:intergenic |
| TGGAACACGTGCGAAACCTT+TGG | 0.373830 | 5_4:+22841718 | Msa0844410:CDS |
| TATATTATTTATATATTGAA+TGG | 0.389076 | 5_4:-22840303 | None:intergenic |
| CGAATTCATTGTGTCTGTTA+CGG | 0.389271 | 5_4:+22840495 | Msa0844410:CDS |
| CAAACTCAATTATTATTGTA+TGG | 0.398935 | 5_4:+22843422 | Msa0844410:three_prime_UTR |
| CTGTCATGCAGATGCGAGTT+GGG | 0.404005 | 5_4:+22842140 | Msa0844410:CDS |
| TTGAATGGTTGAAACAGAAC+AGG | 0.418033 | 5_4:-22840288 | None:intergenic |
| TGTTGATCAACAAATTGATA+AGG | 0.424040 | 5_4:-22843474 | None:intergenic |
| GTAAGGATCCAGATATCGTT+TGG | 0.437202 | 5_4:+22840343 | Msa0844410:five_prime_UTR |
| CGTAACAGACACAATGAATT+CGG | 0.440767 | 5_4:-22840494 | None:intergenic |
| TGATTTAGCTTTAAGTGATG+TGG | 0.441583 | 5_4:+22843246 | Msa0844410:CDS |
| AATCGAAGATGCCTCTCAAC+AGG | 0.443153 | 5_4:+22840418 | Msa0844410:exon |
| GGGGAAGGTACTGTCATTAG+AGG | 0.444755 | 5_4:+22841752 | Msa0844410:CDS |
| TTAAATTATTATTATGAGCA+TGG | 0.456891 | 5_4:+22843363 | Msa0844410:three_prime_UTR |
| GTGATGTGGGCCACAATCCT+TGG | 0.463346 | 5_4:+22843260 | Msa0844410:CDS |
| TCTCAACAGGCAGCAAACTC+TGG | 0.464067 | 5_4:+22840431 | Msa0844410:CDS |
| AACGGTAATCTCGCTGCTGC+CGG | 0.478602 | 5_4:+22840462 | Msa0844410:CDS |
| ATGCTGAACAACAACTTTGG+AGG | 0.480591 | 5_4:+22841558 | Msa0844410:CDS |
| ATAATTGAGTTTGAGATCAG+TGG | 0.498646 | 5_4:-22843412 | None:intergenic |
| ACAATGCTGAACAACAACTT+TGG | 0.506884 | 5_4:+22841555 | Msa0844410:CDS |
| AGGCAGCAAACTCTGGTGAA+TGG | 0.511533 | 5_4:+22840438 | Msa0844410:CDS |
| GATTTAGCTTTAAGTGATGT+GGG | 0.513269 | 5_4:+22843247 | Msa0844410:CDS |
| TCAAGTACCAAGTCAGTGTT+GGG | 0.514039 | 5_4:-22843292 | None:intergenic |
| GTTGTGGAGGATAAGATGTA+AGG | 0.516268 | 5_4:+22840326 | Msa0844410:five_prime_UTR |
| ATCAAGTACCAAGTCAGTGT+TGG | 0.538271 | 5_4:-22843293 | None:intergenic |
| GTACTTGATGTTGAGCTCGT+GGG | 0.538543 | 5_4:+22843307 | Msa0844410:CDS |
| CAAACTCTGGTGAATGGAAA+CGG | 0.546779 | 5_4:+22840444 | Msa0844410:CDS |
| TATAAATAATATAGTTGTGG+AGG | 0.550777 | 5_4:+22840313 | Msa0844410:five_prime_UTR |
| GGTACTTGATGTTGAGCTCG+TGG | 0.556080 | 5_4:+22843306 | Msa0844410:CDS |
| TGGGGAACAAGCTCGTTTCG+AGG | 0.557634 | 5_4:+22842159 | Msa0844410:CDS |
| TCCCCAATTCTGAAAACCAA+AGG | 0.557703 | 5_4:-22841734 | None:intergenic |
| TATACCGCCCAACACTGACT+TGG | 0.559133 | 5_4:+22843285 | Msa0844410:CDS |
| TGGCAATGCATGATCTGAGT+TGG | 0.566527 | 5_4:+22843502 | Msa0844410:three_prime_UTR |
| GAGGAGGGGTACTACTTGTA+CGG | 0.567397 | 5_4:-22840245 | None:intergenic |
| ATGAATTCGGACATATTGAC+CGG | 0.575821 | 5_4:-22840481 | None:intergenic |
| AGAGTTTGCTGCCTGTTGAG+AGG | 0.580626 | 5_4:-22840429 | None:intergenic |
| GCGGTATATTCCAAGGATTG+TGG | 0.587100 | 5_4:-22843270 | None:intergenic |
| GTGTTGGGCGGTATATTCCA+AGG | 0.594265 | 5_4:-22843277 | None:intergenic |
| TACATTACATTACAGCTCAA+GGG | 0.597584 | 5_4:+22841682 | Msa0844410:intron |
| ATATATAAATAATATAGTTG+TGG | 0.603125 | 5_4:+22840310 | Msa0844410:five_prime_UTR |
| TCAAGGGTAGGACATCCTCC+TGG | 0.609284 | 5_4:+22841698 | Msa0844410:CDS |
| GCTGTCATGCAGATGCGAGT+TGG | 0.614371 | 5_4:+22842139 | Msa0844410:CDS |
| TTACATTACAGCTCAAGGGT+AGG | 0.659169 | 5_4:+22841686 | Msa0844410:intron |
| AATGGTTGAAACAGAACAGG+GGG | 0.686940 | 5_4:-22840285 | None:intergenic |
| AGTACCAAGTCAGTGTTGGG+CGG | 0.691555 | 5_4:-22843289 | None:intergenic |
| TGAATGGTTGAAACAGAACA+GGG | 0.696357 | 5_4:-22840287 | None:intergenic |
| GGTTTCGCACGTGTTCCAGG+AGG | 0.697090 | 5_4:-22841713 | None:intergenic |
| TGTCATGCAGATGCGAGTTG+GGG | 0.703241 | 5_4:+22842141 | Msa0844410:CDS |
| GAATGGTTGAAACAGAACAG+GGG | 0.737191 | 5_4:-22840286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAATAATATAGTTG+TGG | + | chr5_4:22840310-22840329 | Msa0844410:five_prime_UTR | 10.0% |
| !!! | AAAAAGTTATTTTAAGTAAA+GGG | - | chr5_4:22842378-22842397 | None:intergenic | 10.0% |
| !!! | ATAAAATTTGCAAATTTTAA+AGG | + | chr5_4:22842793-22842812 | Msa0844410:intron | 10.0% |
| !!! | CTATTAAATATGTTTAAAAT+TGG | - | chr5_4:22843170-22843189 | None:intergenic | 10.0% |
| !! | ATTAATCAAATCAAATGTAA+GGG | - | chr5_4:22841497-22841516 | None:intergenic | 15.0% |
| !! | AATTAATCAAATCAAATGTA+AGG | - | chr5_4:22841498-22841517 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTACATGAT+TGG | + | chr5_4:22841881-22841900 | Msa0844410:intron | 15.0% |
| !! | ATTAATAGTATATAAAGGAA+TGG | - | chr5_4:22842347-22842366 | None:intergenic | 15.0% |
| !!! | AAAGCATTAATAGTATATAA+AGG | - | chr5_4:22842352-22842371 | None:intergenic | 15.0% |
| !!! | CAAAAAGTTATTTTAAGTAA+AGG | - | chr5_4:22842379-22842398 | None:intergenic | 15.0% |
| !!! | TAAAATAACTTTTTGTCATT+TGG | + | chr5_4:22842384-22842403 | Msa0844410:intron | 15.0% |
| !!! | AAAATAACTTTTTGTCATTT+GGG | + | chr5_4:22842385-22842404 | Msa0844410:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr5_4:22843006-22843025 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr5_4:22843005-22843024 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr5_4:22843006-22843025 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr5_4:22843005-22843024 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr5_4:22843005-22843024 | Msa0844410:intron | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr5_4:22843006-22843025 | Msa0844410:intron | 15.0% |
| !! | TGAAAACTAAAATAAACATA+CGG | + | chr5_4:22843005-22843024 | Msa0844410:intron | 15.0% |
| !! | TAACAAAATGAATAATAGTT+GGG | - | chr5_4:22843209-22843228 | None:intergenic | 15.0% |
| !! | TTAACAAAATGAATAATAGT+TGG | - | chr5_4:22843210-22843229 | None:intergenic | 15.0% |
| !! | TTAAATTATTATTATGAGCA+TGG | + | chr5_4:22843363-22843382 | Msa0844410:three_prime_UTR | 15.0% |
| !! | TATAAATAATATAGTTGTGG+AGG | + | chr5_4:22840313-22840332 | Msa0844410:five_prime_UTR | 20.0% |
| !! | TTGATAGATAGAAATAGAAA+GGG | - | chr5_4:22840537-22840556 | None:intergenic | 20.0% |
| !! | TTTATAATAAGCCTAAATCA+TGG | + | chr5_4:22842230-22842249 | Msa0844410:intron | 20.0% |
| !!! | AAATAACTTTTTGTCATTTG+GGG | + | chr5_4:22842386-22842405 | Msa0844410:intron | 20.0% |
| !! | AAGAAACAAATAAGCTAAAA+AGG | - | chr5_4:22842482-22842501 | None:intergenic | 20.0% |
| !!! | GCTATTTTTATTACAAAAGA+TGG | - | chr5_4:22842556-22842575 | None:intergenic | 20.0% |
| !! | AATTTAGTGATAAGTGTTTA+TGG | + | chr5_4:22842588-22842607 | Msa0844410:intron | 20.0% |
| !! | AAAGGAAATTTAATAAATCC+TGG | - | chr5_4:22842651-22842670 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr5_4:22842841-22842860 | Msa0844410:intron | 20.0% |
| !!! | TGAAAACTTTTAAAACGTAA+GGG | - | chr5_4:22842897-22842916 | None:intergenic | 20.0% |
| !!! | TTGAAAACTTTTAAAACGTA+AGG | - | chr5_4:22842898-22842917 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+CGG | + | chr5_4:22842841-22842860 | Msa0844410:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr5_4:22842841-22842860 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr5_4:22842841-22842860 | None:intergenic | 20.0% |
| !! | TGAAAACTAAAATAAACGTA+TGG | + | chr5_4:22843065-22843084 | Msa0844410:intron | 20.0% |
| !! | GAAAACTAAAATAAACGTAT+GGG | + | chr5_4:22843066-22843085 | Msa0844410:intron | 20.0% |
| !! | TTGAAACTTTCAAAACATAA+GGG | + | chr5_4:22843095-22843114 | Msa0844410:intron | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr5_4:22842841-22842860 | None:intergenic | 20.0% |
| !! | GAAAACTAAAATAAACATAC+GGG | + | chr5_4:22843126-22843145 | Msa0844410:intron | 20.0% |
| !! | CAAACTCAATTATTATTGTA+TGG | + | chr5_4:22843422-22843441 | Msa0844410:three_prime_UTR | 20.0% |
| !!! | ATTTGTTGATCAACATAATT+TGG | + | chr5_4:22843482-22843501 | Msa0844410:three_prime_UTR | 20.0% |
| ! | TGATAGATAGAAATAGAAAG+GGG | - | chr5_4:22840536-22840555 | None:intergenic | 25.0% |
| !! | GTTGATAGATAGAAATAGAA+AGG | - | chr5_4:22840538-22840557 | None:intergenic | 25.0% |
| !! | TAGCTTTTGCAAATTAATTC+TGG | + | chr5_4:22840651-22840670 | Msa0844410:intron | 25.0% |
| !! | AGCTTTTGCAAATTAATTCT+GGG | + | chr5_4:22840652-22840671 | Msa0844410:intron | 25.0% |
| !! | ATTGTAAAACTGCTCTAAAT+TGG | - | chr5_4:22840827-22840846 | None:intergenic | 25.0% |
| ! | AATTTGTATCTAGTGATCTA+TGG | - | chr5_4:22840989-22841008 | None:intergenic | 25.0% |
| ! | AAATTGTGTACCTTTGAATT+AGG | + | chr5_4:22841042-22841061 | Msa0844410:intron | 25.0% |
| ! | AACATAATTAACCGTCTAAT+GGG | + | chr5_4:22841154-22841173 | Msa0844410:intron | 25.0% |
| ! | ATGACGTTTAAATAGCTAAA+CGG | + | chr5_4:22841177-22841196 | Msa0844410:intron | 25.0% |
| !!! | AGGGTTGATAAATATAATGT+TGG | - | chr5_4:22841396-22841415 | None:intergenic | 25.0% |
| ! | TAGTATATAAAGGAATGGTA+AGG | - | chr5_4:22842342-22842361 | None:intergenic | 25.0% |
| ! | TAAGTTAAAACAAACAGCAA+AGG | - | chr5_4:22842669-22842688 | None:intergenic | 25.0% |
| !! | TTTAACTTAAACACACACAT+AGG | + | chr5_4:22842680-22842699 | Msa0844410:intron | 25.0% |
| ! | TTAACTTAAACACACACATA+GGG | + | chr5_4:22842681-22842700 | Msa0844410:intron | 25.0% |
| ! | AATACAAATGCTCAATTGAT+CGG | - | chr5_4:22842755-22842774 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr5_4:22843035-22843054 | None:intergenic | 25.0% |
| !!! | CGTTTTAAAAGTTTTCAAGT+TGG | + | chr5_4:22842900-22842919 | Msa0844410:intron | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | - | chr5_4:22843035-22843054 | None:intergenic | 25.0% |
| ! | TTGAAACTTTCAAAACGTAA+GGG | + | chr5_4:22843035-22843054 | Msa0844410:intron | 25.0% |
| !!! | ATGTTTTGAAAGTTTCAAGT+TGG | - | chr5_4:22843093-22843112 | None:intergenic | 25.0% |
| ! | CTTGAAACTTTCAAAACATA+AGG | + | chr5_4:22843094-22843113 | Msa0844410:intron | 25.0% |
| ! | TGTTGATCAACAAATTGATA+AGG | - | chr5_4:22843477-22843496 | None:intergenic | 25.0% |
| CATATCATCAGTAACAAAGA+AGG | + | chr5_4:22841013-22841032 | Msa0844410:intron | 30.0% | |
| CGGTTAATTATGTTGAATGT+TGG | - | chr5_4:22841148-22841167 | None:intergenic | 30.0% | |
| CAACATAATTAACCGTCTAA+TGG | + | chr5_4:22841153-22841172 | Msa0844410:intron | 30.0% | |
| ATTGGGCTATTGTTACTAAA+TGG | - | chr5_4:22841257-22841276 | None:intergenic | 30.0% | |
| ! | GTTGATGAATATGTGTGATT+GGG | - | chr5_4:22841274-22841293 | None:intergenic | 30.0% |
| !! | AGTTGATGAATATGTGTGAT+TGG | - | chr5_4:22841275-22841294 | None:intergenic | 30.0% |
| TTACATTACATTACAGCTCA+AGG | + | chr5_4:22841681-22841700 | Msa0844410:intron | 30.0% | |
| TACATTACATTACAGCTCAA+GGG | + | chr5_4:22841682-22841701 | Msa0844410:intron | 30.0% | |
| !!! | AAACCTTTGGTTTTCAGAAT+TGG | + | chr5_4:22841731-22841750 | Msa0844410:CDS | 30.0% |
| !!! | AACCTTTGGTTTTCAGAATT+GGG | + | chr5_4:22841732-22841751 | Msa0844410:CDS | 30.0% |
| TATACTCTGTTCTATGTGTA+TGG | + | chr5_4:22841797-22841816 | Msa0844410:intron | 30.0% | |
| !! | TTTTGTTACATGATTGGTTG+TGG | + | chr5_4:22841887-22841906 | Msa0844410:intron | 30.0% |
| TGTGAGTTGCAGTATTATAT+AGG | - | chr5_4:22842038-22842057 | None:intergenic | 30.0% | |
| GCTTATTATAAAGTGAGTGT+TGG | - | chr5_4:22842222-22842241 | None:intergenic | 30.0% | |
| ! | AAATAAGCTAAAAAGGTGCA+TGG | - | chr5_4:22842475-22842494 | None:intergenic | 30.0% |
| TAAAGGCTTAATTGCATGTT+TGG | + | chr5_4:22842810-22842829 | Msa0844410:intron | 30.0% | |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr5_4:22843034-22843053 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr5_4:22842870-22842889 | Msa0844410:intron | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | - | chr5_4:22843034-22843053 | None:intergenic | 30.0% | |
| !!! | ACGTTTTGAAAGTTTCAAGT+TGG | + | chr5_4:22842870-22842889 | Msa0844410:intron | 30.0% |
| CTTGAAACTTTCAAAACGTA+AGG | + | chr5_4:22843034-22843053 | Msa0844410:intron | 30.0% | |
| ! | AATTGGCTTAATTGCATGTT+TGG | - | chr5_4:22843153-22843172 | None:intergenic | 30.0% |
| !! | TGATTTAGCTTTAAGTGATG+TGG | + | chr5_4:22843246-22843265 | Msa0844410:CDS | 30.0% |
| !! | GATTTAGCTTTAAGTGATGT+GGG | + | chr5_4:22843247-22843266 | Msa0844410:CDS | 30.0% |
| ! | ATAATTGAGTTTGAGATCAG+TGG | - | chr5_4:22843415-22843434 | None:intergenic | 30.0% |
| !! | AAGTTTTTCTGAAAGAGGAG+GGG | - | chr5_4:22840262-22840281 | None:intergenic | 35.0% |
| !! | CAAGTTTTTCTGAAAGAGGA+GGG | - | chr5_4:22840263-22840282 | None:intergenic | 35.0% |
| !! | ACAAGTTTTTCTGAAAGAGG+AGG | - | chr5_4:22840264-22840283 | None:intergenic | 35.0% |
| !! | GGTACAAGTTTTTCTGAAAG+AGG | - | chr5_4:22840267-22840286 | None:intergenic | 35.0% |
| TGAATGGTTGAAACAGAACA+GGG | - | chr5_4:22840290-22840309 | None:intergenic | 35.0% | |
| TTGAATGGTTGAAACAGAAC+AGG | - | chr5_4:22840291-22840310 | None:intergenic | 35.0% | |
| ATGAATTCGGACATATTGAC+CGG | - | chr5_4:22840484-22840503 | None:intergenic | 35.0% | |
| CGTAACAGACACAATGAATT+CGG | - | chr5_4:22840497-22840516 | None:intergenic | 35.0% | |
| CGAATTCATTGTGTCTGTTA+CGG | + | chr5_4:22840495-22840514 | Msa0844410:CDS | 35.0% | |
| AATGCCACTAAACTTTCTAC+TGG | + | chr5_4:22840675-22840694 | Msa0844410:intron | 35.0% | |
| AGATCCAGTAGAAAGTTTAG+TGG | - | chr5_4:22840682-22840701 | None:intergenic | 35.0% | |
| GATCACAAGACAAAGGAAAT+TGG | - | chr5_4:22840916-22840935 | None:intergenic | 35.0% | |
| CCTTCATCAACCTAATTCAA+AGG | - | chr5_4:22841055-22841074 | None:intergenic | 35.0% | |
| !! | CCTTTGAATTAGGTTGATGA+AGG | + | chr5_4:22841052-22841071 | Msa0844410:intron | 35.0% |
| TTAAACGTCATCCCATTAGA+CGG | - | chr5_4:22841168-22841187 | None:intergenic | 35.0% | |
| ATTTAGATAAGCCCAATGAG+AGG | - | chr5_4:22841216-22841235 | None:intergenic | 35.0% | |
| TCTCATTGGGCTTATCTAAA+TGG | + | chr5_4:22841215-22841234 | Msa0844410:intron | 35.0% | |
| TATCAACCCTCAAAACTTAG+TGG | + | chr5_4:22841406-22841425 | Msa0844410:intron | 35.0% | |
| ATCAACCCTCAAAACTTAGT+GGG | + | chr5_4:22841407-22841426 | Msa0844410:intron | 35.0% | |
| !!! | AGGGTTGATCTGTTTTTTTC+TGG | - | chr5_4:22841478-22841497 | None:intergenic | 35.0% |
| TTACGATTGTGATGATAACC+AGG | + | chr5_4:22841527-22841546 | Msa0844410:intron | 35.0% | |
| ACAATGCTGAACAACAACTT+TGG | + | chr5_4:22841555-22841574 | Msa0844410:CDS | 35.0% | |
| !!! | ACCTTTGGTTTTCAGAATTG+GGG | + | chr5_4:22841733-22841752 | Msa0844410:CDS | 35.0% |
| TTTCAACTATGTGTGTGTGT+AGG | + | chr5_4:22842106-22842125 | Msa0844410:intron | 35.0% | |
| GATAAACCTACCACTTTAAG+TGG | - | chr5_4:22842282-22842301 | None:intergenic | 35.0% | |
| CACTCTCTTCATTCTCTTAT+TGG | - | chr5_4:22842304-22842323 | None:intergenic | 35.0% | |
| ATACTGTTTGTGAGAGCTTA+TGG | + | chr5_4:22842431-22842450 | Msa0844410:intron | 35.0% | |
| ! | AATAAATCCTGGCCATGTTT+TGG | - | chr5_4:22842640-22842659 | None:intergenic | 35.0% |
| CAAATGTCTATGACTTGAGT+AGG | - | chr5_4:22842717-22842736 | None:intergenic | 35.0% | |
| AATGGTTGAAACAGAACAGG+GGG | - | chr5_4:22840288-22840307 | None:intergenic | 40.0% | |
| GAATGGTTGAAACAGAACAG+GGG | - | chr5_4:22840289-22840308 | None:intergenic | 40.0% | |
| GTTGTGGAGGATAAGATGTA+AGG | + | chr5_4:22840326-22840345 | Msa0844410:five_prime_UTR | 40.0% | |
| GTAAGGATCCAGATATCGTT+TGG | + | chr5_4:22840343-22840362 | Msa0844410:five_prime_UTR | 40.0% | |
| ! | AGTTTGCTCCAAACGATATC+TGG | - | chr5_4:22840354-22840373 | None:intergenic | 40.0% |
| CAAACTCTGGTGAATGGAAA+CGG | + | chr5_4:22840444-22840463 | Msa0844410:CDS | 40.0% | |
| GGATCTATAAAGCTAGTGCT+AGG | + | chr5_4:22840696-22840715 | Msa0844410:intron | 40.0% | |
| AACCATGACCAGAATTTGTG+TGG | + | chr5_4:22840869-22840888 | Msa0844410:intron | 40.0% | |
| AACCACACAAATTCTGGTCA+TGG | - | chr5_4:22840874-22840893 | None:intergenic | 40.0% | |
| GAACTCAACCACACAAATTC+TGG | - | chr5_4:22840880-22840899 | None:intergenic | 40.0% | |
| ACAAAGGAAATTGGTCGACT+CGG | - | chr5_4:22840907-22840926 | None:intergenic | 40.0% | |
| TTCCTTTGTCTTGTGATCTG+TGG | + | chr5_4:22840918-22840937 | Msa0844410:intron | 40.0% | |
| TACCACAGATCACAAGACAA+AGG | - | chr5_4:22840923-22840942 | None:intergenic | 40.0% | |
| TTGTGATCTGTGGTAAAGTG+TGG | + | chr5_4:22840928-22840947 | Msa0844410:intron | 40.0% | |
| GTTATCCCTCTCATAGTTGT+CGG | - | chr5_4:22841094-22841113 | None:intergenic | 40.0% | |
| GGTGAAAACCTAGAGTTAGA+CGG | - | chr5_4:22841127-22841146 | None:intergenic | 40.0% | |
| TTTAAATAGCTAAACGGCCG+AGG | + | chr5_4:22841183-22841202 | Msa0844410:intron | 40.0% | |
| TTAAATAGCTAAACGGCCGA+GGG | + | chr5_4:22841184-22841203 | Msa0844410:intron | 40.0% | |
| GTTACTAAATGGACCGTGAT+GGG | - | chr5_4:22841246-22841265 | None:intergenic | 40.0% | |
| TGTTACTAAATGGACCGTGA+TGG | - | chr5_4:22841247-22841266 | None:intergenic | 40.0% | |
| !! | ACACACCCACTAAGTTTTGA+GGG | - | chr5_4:22841415-22841434 | None:intergenic | 40.0% |
| ATGCTGAACAACAACTTTGG+AGG | + | chr5_4:22841558-22841577 | Msa0844410:CDS | 40.0% | |
| ! | CAACAACTTTGGAGGTTACT+TGG | + | chr5_4:22841566-22841585 | Msa0844410:intron | 40.0% |
| TTACATTACAGCTCAAGGGT+AGG | + | chr5_4:22841686-22841705 | Msa0844410:intron | 40.0% | |
| ! | TCCCCAATTCTGAAAACCAA+AGG | - | chr5_4:22841737-22841756 | None:intergenic | 40.0% |
| !! | TTGGTTTTCAGAATTGGGGA+AGG | + | chr5_4:22841737-22841756 | Msa0844410:CDS | 40.0% |
| CACGTTCAAAGTCACATGAT+TGG | + | chr5_4:22841848-22841867 | Msa0844410:intron | 40.0% | |
| ! | CAAAGTCACATGATTGGTTG+TGG | + | chr5_4:22841854-22841873 | Msa0844410:intron | 40.0% |
| TGTGAGACACACCATGATTT+AGG | - | chr5_4:22842244-22842263 | None:intergenic | 40.0% | |
| ! | TGTGTCTCACACTTTGGAAA+TGG | + | chr5_4:22842253-22842272 | Msa0844410:intron | 40.0% |
| ! | GTGTCTCACACTTTGGAAAT+GGG | + | chr5_4:22842254-22842273 | Msa0844410:intron | 40.0% |
| ! | GAAATGGGTTCCACTTAAAG+TGG | + | chr5_4:22842269-22842288 | Msa0844410:intron | 40.0% |
| GGACGAACAACTCAATTAAG+TGG | - | chr5_4:22842619-22842638 | None:intergenic | 40.0% | |
| TGAGTTGTTCGTCCAAAACA+TGG | + | chr5_4:22842625-22842644 | Msa0844410:intron | 40.0% | |
| ACTTAAACACACACATAGGG+TGG | + | chr5_4:22842684-22842703 | Msa0844410:intron | 40.0% | |
| TCAAGTCGGTCCAAAACATA+AGG | + | chr5_4:22842974-22842993 | Msa0844410:intron | 40.0% | |
| CAAGTCGGTCCAAAACATAA+GGG | + | chr5_4:22842975-22842994 | Msa0844410:intron | 40.0% | |
| !!! | CAAGTTGGTCCCTTATGTTT+TGG | - | chr5_4:22842944-22842963 | None:intergenic | 40.0% |
| TCAAGTACCAAGTCAGTGTT+GGG | - | chr5_4:22843295-22843314 | None:intergenic | 40.0% | |
| ATCAAGTACCAAGTCAGTGT+TGG | - | chr5_4:22843296-22843315 | None:intergenic | 40.0% | |
| AATCGAAGATGCCTCTCAAC+AGG | + | chr5_4:22840418-22840437 | Msa0844410:exon | 45.0% | |
| ACAACTCCGACAACTATGAG+AGG | + | chr5_4:22841085-22841104 | Msa0844410:intron | 45.0% | |
| CAACTCCGACAACTATGAGA+GGG | + | chr5_4:22841086-22841105 | Msa0844410:intron | 45.0% | |
| CCTAGAGTTAGACGGAATGA+GGG | - | chr5_4:22841119-22841138 | None:intergenic | 45.0% | |
| ACCTAGAGTTAGACGGAATG+AGG | - | chr5_4:22841120-22841139 | None:intergenic | 45.0% | |
| CTAAATGGTCCAACCCATCA+CGG | + | chr5_4:22841230-22841249 | Msa0844410:intron | 45.0% | |
| ! | CACACACCCACTAAGTTTTG+AGG | - | chr5_4:22841416-22841435 | None:intergenic | 45.0% |
| TCATGGTGTGTCTCACACTT+TGG | + | chr5_4:22842247-22842266 | Msa0844410:intron | 45.0% | |
| TGGGTTCCACTTAAAGTGGT+AGG | + | chr5_4:22842273-22842292 | Msa0844410:intron | 45.0% | |
| GCGGTATATTCCAAGGATTG+TGG | - | chr5_4:22843273-22843292 | None:intergenic | 45.0% | |
| GTACTTGATGTTGAGCTCGT+GGG | + | chr5_4:22843307-22843326 | Msa0844410:CDS | 45.0% | |
| ! | GTTGAGCTCGTGGGTATTTT+TGG | + | chr5_4:22843316-22843335 | Msa0844410:CDS | 45.0% |
| TGGCAATGCATGATCTGAGT+TGG | + | chr5_4:22843502-22843521 | Msa0844410:three_prime_UTR | 45.0% | |
| !! | TATATTATTTATATATTGAA+TGG | - | chr5_4:22840306-22840325 | None:intergenic | 5.0% |
| !! | TAATCTTATAATATAAATTA+TGG | - | chr5_4:22841320-22841339 | None:intergenic | 5.0% |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr5_4:22841369-22841388 | None:intergenic | 5.0% |
| !! | AAAAAATAATAAAAAATAGA+AGG | - | chr5_4:22841608-22841627 | None:intergenic | 5.0% |
| !! | GAGGAGGGGTACTACTTGTA+CGG | - | chr5_4:22840248-22840267 | None:intergenic | 50.0% |
| !! | AGAGTTTGCTGCCTGTTGAG+AGG | - | chr5_4:22840432-22840451 | None:intergenic | 50.0% |
| TCTCAACAGGCAGCAAACTC+TGG | + | chr5_4:22840431-22840450 | Msa0844410:CDS | 50.0% | |
| AGGCAGCAAACTCTGGTGAA+TGG | + | chr5_4:22840438-22840457 | Msa0844410:CDS | 50.0% | |
| CCCTCATTCCGTCTAACTCT+AGG | + | chr5_4:22841116-22841135 | Msa0844410:intron | 50.0% | |
| !! | CTAAATGGACCGTGATGGGT+TGG | - | chr5_4:22841242-22841261 | None:intergenic | 50.0% |
| TGTTCAGCATTGTCAGCTCC+TGG | - | chr5_4:22841548-22841567 | None:intergenic | 50.0% | |
| AAAGGTTTCGCACGTGTTCC+AGG | - | chr5_4:22841719-22841738 | None:intergenic | 50.0% | |
| TGGAACACGTGCGAAACCTT+TGG | + | chr5_4:22841718-22841737 | Msa0844410:CDS | 50.0% | |
| !! | GGGGAAGGTACTGTCATTAG+AGG | + | chr5_4:22841752-22841771 | Msa0844410:CDS | 50.0% |
| CTGTCATGCAGATGCGAGTT+GGG | + | chr5_4:22842140-22842159 | Msa0844410:CDS | 50.0% | |
| TGTCATGCAGATGCGAGTTG+GGG | + | chr5_4:22842141-22842160 | Msa0844410:CDS | 50.0% | |
| TGTTCGTCCAAAACATGGCC+AGG | + | chr5_4:22842630-22842649 | Msa0844410:intron | 50.0% | |
| GTGTTGGGCGGTATATTCCA+AGG | - | chr5_4:22843280-22843299 | None:intergenic | 50.0% | |
| ! | TATACCGCCCAACACTGACT+TGG | + | chr5_4:22843285-22843304 | Msa0844410:CDS | 50.0% |
| ! | AGTACCAAGTCAGTGTTGGG+CGG | - | chr5_4:22843292-22843311 | None:intergenic | 50.0% |
| GGTACTTGATGTTGAGCTCG+TGG | + | chr5_4:22843306-22843325 | Msa0844410:CDS | 50.0% | |
| AACGGTAATCTCGCTGCTGC+CGG | + | chr5_4:22840462-22840481 | Msa0844410:CDS | 55.0% | |
| TCAAGGGTAGGACATCCTCC+TGG | + | chr5_4:22841698-22841717 | Msa0844410:CDS | 55.0% | |
| GCTGTCATGCAGATGCGAGT+TGG | + | chr5_4:22842139-22842158 | Msa0844410:CDS | 55.0% | |
| TGGGGAACAAGCTCGTTTCG+AGG | + | chr5_4:22842159-22842178 | Msa0844410:CDS | 55.0% | |
| GTGATGTGGGCCACAATCCT+TGG | + | chr5_4:22843260-22843279 | Msa0844410:CDS | 55.0% | |
| ATAGCTAAACGGCCGAGGGC+AGG | + | chr5_4:22841188-22841207 | Msa0844410:intron | 60.0% | |
| TAGCTAAACGGCCGAGGGCA+GGG | + | chr5_4:22841189-22841208 | Msa0844410:intron | 60.0% | |
| CAATGAGAGGTCCCTGCCCT+CGG | - | chr5_4:22841203-22841222 | None:intergenic | 60.0% | |
| GAGGGCAGGGACCTCTCATT+GGG | + | chr5_4:22841202-22841221 | Msa0844410:intron | 60.0% | |
| GGTTTCGCACGTGTTCCAGG+AGG | - | chr5_4:22841716-22841735 | None:intergenic | 60.0% | |
| CGAGGGCAGGGACCTCTCAT+TGG | + | chr5_4:22841201-22841220 | Msa0844410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22840221 | 22843540 | 22840221 | ID=Msa0844410;Name=Msa0844410 |
| chr5_4 | mRNA | 22840221 | 22843540 | 22840221 | ID=Msa0844410-mRNA-1;Parent=Msa0844410;Name=Msa0844410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=205|1|1|1|1|1|5|189|121 |
| chr5_4 | exon | 22840221 | 22840516 | 22840221 | ID=Msa0844410-mRNA-1:exon:9288;Parent=Msa0844410-mRNA-1 |
| chr5_4 | exon | 22841549 | 22841579 | 22841549 | ID=Msa0844410-mRNA-1:exon:9289;Parent=Msa0844410-mRNA-1 |
| chr5_4 | exon | 22841697 | 22841773 | 22841697 | ID=Msa0844410-mRNA-1:exon:9290;Parent=Msa0844410-mRNA-1 |
| chr5_4 | exon | 22842128 | 22842180 | 22842128 | ID=Msa0844410-mRNA-1:exon:9291;Parent=Msa0844410-mRNA-1 |
| chr5_4 | exon | 22843238 | 22843540 | 22843238 | ID=Msa0844410-mRNA-1:exon:9292;Parent=Msa0844410-mRNA-1 |
| chr5_4 | five_prime_UTR | 22840221 | 22840425 | 22840221 | ID=Msa0844410-mRNA-1:five_prime_utr;Parent=Msa0844410-mRNA-1 |
| chr5_4 | CDS | 22840426 | 22840516 | 22840426 | ID=Msa0844410-mRNA-1:cds;Parent=Msa0844410-mRNA-1 |
| chr5_4 | CDS | 22841549 | 22841579 | 22841549 | ID=Msa0844410-mRNA-1:cds;Parent=Msa0844410-mRNA-1 |
| chr5_4 | CDS | 22841697 | 22841773 | 22841697 | ID=Msa0844410-mRNA-1:cds;Parent=Msa0844410-mRNA-1 |
| chr5_4 | CDS | 22842128 | 22842180 | 22842128 | ID=Msa0844410-mRNA-1:cds;Parent=Msa0844410-mRNA-1 |
| chr5_4 | CDS | 22843238 | 22843351 | 22843238 | ID=Msa0844410-mRNA-1:cds;Parent=Msa0844410-mRNA-1 |
| chr5_4 | three_prime_UTR | 22843352 | 22843540 | 22843352 | ID=Msa0844410-mRNA-1:three_prime_utr;Parent=Msa0844410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
