Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847250 | XP_003614161.1 | 99.506 | 405 | 2 | 0 | 1 | 405 | 1 | 405 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847250 | sp|Q9ZPR4|MRS25_ARATH | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 6.14e-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847250 | G7JZ40 | 99.506 | 405 | 2 | 0 | 1 | 405 | 1 | 405 | 0.0 | 828 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607540 | Msa0847250 | 0.832568 | 8.775878e-56 | -8.615850e-47 |
| Msa0647830 | Msa0847250 | 0.805843 | 1.097702e-49 | -8.615850e-47 |
| Msa0715720 | Msa0847250 | 0.806386 | 8.437760e-50 | -8.615850e-47 |
| Msa0475490 | Msa0847250 | 0.812063 | 5.119775e-51 | -8.615850e-47 |
| Msa0553460 | Msa0847250 | 0.813993 | 1.932013e-51 | -8.615850e-47 |
| Msa0847250 | Msa0886330 | -0.817306 | 3.531681e-52 | -8.615850e-47 |
| Msa0847250 | Msa1205130 | 0.812163 | 4.868430e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847250 | MtrunA17_Chr5g0419611 | 99.506 | 405 | 2 | 0 | 1 | 405 | 1 | 405 | 0.0 | 828 |
| Msa0847250 | MtrunA17_Chr2g0333971 | 52.706 | 425 | 153 | 5 | 20 | 404 | 31 | 447 | 2.25e-142 | 413 |
| Msa0847250 | MtrunA17_Chr5g0393831 | 39.723 | 433 | 208 | 8 | 20 | 403 | 15 | 443 | 5.18e-95 | 291 |
| Msa0847250 | MtrunA17_Chr8g0380621 | 39.651 | 401 | 183 | 9 | 32 | 403 | 50 | 420 | 7.04e-83 | 259 |
| Msa0847250 | MtrunA17_Chr1g0187901 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 6.98e-75 | 238 |
| Msa0847250 | MtrunA17_Chr8g0384941 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 1.02e-74 | 239 |
| Msa0847250 | MtrunA17_Chr1g0206981 | 34.579 | 428 | 227 | 8 | 22 | 403 | 3 | 423 | 2.41e-73 | 235 |
| Msa0847250 | MtrunA17_Chr1g0165841 | 38.120 | 383 | 182 | 6 | 40 | 403 | 19 | 365 | 8.82e-67 | 216 |
| Msa0847250 | MtrunA17_Chr1g0165861 | 38.272 | 243 | 118 | 6 | 163 | 403 | 1 | 213 | 1.89e-43 | 150 |
| Msa0847250 | MtrunA17_Chr7g0260731 | 43.421 | 228 | 105 | 3 | 136 | 363 | 45 | 248 | 1.22e-40 | 145 |
| Msa0847250 | MtrunA17_Chr8g0385861 | 42.233 | 206 | 76 | 2 | 39 | 201 | 33 | 238 | 1.29e-40 | 144 |
| Msa0847250 | MtrunA17_Chr8g0385851 | 37.273 | 110 | 68 | 1 | 295 | 403 | 1 | 110 | 1.64e-17 | 77.8 |
| Msa0847250 | MtrunA17_Chr2g0307921 | 46.753 | 77 | 41 | 0 | 31 | 107 | 8 | 84 | 3.04e-17 | 76.6 |
| Msa0847250 | MtrunA17_Chr1g0187911 | 44.944 | 89 | 39 | 1 | 275 | 363 | 58 | 136 | 5.19e-16 | 75.1 |
| Msa0847250 | MtrunA17_Chr7g0260721 | 50.769 | 65 | 32 | 0 | 32 | 96 | 17 | 81 | 1.01e-15 | 72.4 |
| Msa0847250 | MtrunA17_Chr1g0165871 | 46.154 | 78 | 36 | 1 | 40 | 111 | 15 | 92 | 1.53e-15 | 73.6 |
| Msa0847250 | MtrunA17_Chr2g0307931 | 53.968 | 63 | 29 | 0 | 45 | 107 | 20 | 82 | 1.71e-14 | 68.9 |
| Msa0847250 | MtrunA17_Chr1g0176551 | 45.556 | 90 | 48 | 1 | 136 | 225 | 57 | 145 | 5.72e-13 | 68.6 |
| Msa0847250 | MtrunA17_Chr2g0330321 | 39.200 | 125 | 61 | 4 | 61 | 181 | 1 | 114 | 2.53e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847250 | AT2G03620.1 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 6.24e-165 | 469 |
| Msa0847250 | AT2G03620.2 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 6.24e-165 | 469 |
| Msa0847250 | AT1G16010.3 | 55.309 | 405 | 150 | 4 | 28 | 404 | 40 | 441 | 3.23e-147 | 425 |
| Msa0847250 | AT1G16010.1 | 55.309 | 405 | 150 | 4 | 28 | 404 | 40 | 441 | 3.23e-147 | 425 |
| Msa0847250 | AT1G16010.2 | 55.309 | 405 | 150 | 4 | 28 | 404 | 40 | 441 | 3.23e-147 | 425 |
| Msa0847250 | AT1G80900.2 | 52.482 | 423 | 151 | 4 | 20 | 404 | 32 | 442 | 4.89e-147 | 425 |
| Msa0847250 | AT1G80900.1 | 52.482 | 423 | 151 | 4 | 20 | 404 | 32 | 442 | 4.89e-147 | 425 |
| Msa0847250 | AT5G09690.1 | 40.909 | 396 | 191 | 4 | 26 | 403 | 14 | 384 | 4.79e-90 | 277 |
| Msa0847250 | AT5G09690.2 | 40.909 | 396 | 191 | 4 | 26 | 403 | 25 | 395 | 4.88e-90 | 278 |
| Msa0847250 | AT3G19640.1 | 40.868 | 438 | 185 | 11 | 40 | 403 | 46 | 483 | 7.54e-89 | 277 |
| Msa0847250 | AT5G09690.12 | 41.417 | 367 | 172 | 4 | 26 | 375 | 25 | 365 | 4.68e-84 | 262 |
| Msa0847250 | AT3G58970.1 | 37.500 | 400 | 201 | 7 | 32 | 403 | 56 | 434 | 1.50e-77 | 247 |
| Msa0847250 | AT5G09690.7 | 42.727 | 330 | 147 | 3 | 26 | 338 | 14 | 318 | 2.78e-73 | 232 |
| Msa0847250 | AT5G09690.8 | 42.727 | 330 | 147 | 3 | 26 | 338 | 25 | 329 | 3.73e-73 | 232 |
| Msa0847250 | AT5G09690.11 | 42.727 | 330 | 147 | 3 | 26 | 338 | 25 | 329 | 3.73e-73 | 232 |
| Msa0847250 | AT5G09690.9 | 42.727 | 330 | 147 | 3 | 26 | 338 | 14 | 318 | 4.65e-73 | 231 |
| Msa0847250 | AT5G09690.3 | 42.727 | 330 | 147 | 3 | 26 | 338 | 14 | 318 | 6.60e-73 | 231 |
| Msa0847250 | AT5G09690.13 | 42.727 | 330 | 147 | 3 | 26 | 338 | 25 | 329 | 7.00e-73 | 231 |
| Msa0847250 | AT5G64560.1 | 40.360 | 389 | 185 | 5 | 40 | 403 | 26 | 392 | 2.97e-69 | 224 |
| Msa0847250 | AT5G09690.4 | 36.364 | 396 | 194 | 6 | 26 | 403 | 14 | 369 | 5.05e-68 | 220 |
| Msa0847250 | AT5G64560.2 | 40.111 | 359 | 161 | 5 | 40 | 370 | 26 | 358 | 1.70e-61 | 203 |
| Msa0847250 | AT5G09690.5 | 46.512 | 215 | 94 | 2 | 26 | 223 | 14 | 224 | 8.56e-54 | 180 |
| Msa0847250 | AT5G09690.14 | 46.512 | 215 | 94 | 2 | 26 | 223 | 25 | 235 | 1.10e-53 | 181 |
| Msa0847250 | AT5G09690.10 | 46.512 | 215 | 94 | 2 | 26 | 223 | 25 | 235 | 1.10e-53 | 181 |
| Msa0847250 | AT5G09690.6 | 46.512 | 215 | 94 | 2 | 26 | 223 | 25 | 235 | 1.10e-53 | 181 |
| Msa0847250 | AT4G28580.1 | 31.078 | 399 | 216 | 6 | 29 | 403 | 44 | 407 | 1.90e-50 | 175 |
| Msa0847250 | AT5G09720.1 | 39.785 | 279 | 137 | 8 | 36 | 301 | 16 | 276 | 1.74e-47 | 164 |
| Msa0847250 | AT5G09720.2 | 39.785 | 279 | 137 | 8 | 36 | 301 | 16 | 276 | 1.74e-47 | 164 |
Find 119 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCTTCCCTTTGAATTT+AGG | 0.090825 | 5_4:+28832040 | Msa0847250:CDS |
| TGATCTTCCCTTTGAATTTA+GGG | 0.224115 | 5_4:+28832041 | Msa0847250:CDS |
| ACCATTCAAATTTGCTGTTT+TGG | 0.225131 | 5_4:-28834038 | None:intergenic |
| GCCGCCGTGGCAGGAGTATT+TGG | 0.234108 | 5_4:+28833609 | Msa0847250:CDS |
| TTCTGGATTCAATTTGGTTT+TGG | 0.248178 | 5_4:+28833665 | Msa0847250:CDS |
| CTACTCTTCTGGATTCAATT+TGG | 0.249380 | 5_4:+28833659 | Msa0847250:CDS |
| ATTTATCCTTCTTCCATATT+AGG | 0.249449 | 5_4:+28831548 | Msa0847250:CDS |
| AGCCATCTCCCTTCCTAATA+TGG | 0.295338 | 5_4:-28831561 | None:intergenic |
| TACAGATTTGTAAAACTAAC+TGG | 0.299186 | 5_4:-28834066 | None:intergenic |
| TTCTAGAGATCTTCGACTAT+TGG | 0.307849 | 5_4:+28831514 | Msa0847250:CDS |
| GAACGTGTTCGAAGATTTAA+AGG | 0.326254 | 5_4:+28832798 | Msa0847250:CDS |
| TTCCATGACCTCTCTGCTTC+AGG | 0.330823 | 5_4:-28831403 | None:intergenic |
| AATCGCAGGGCTGGTATAAA+AGG | 0.334220 | 5_4:+28831380 | Msa0847250:CDS |
| GAAGCATCTCAAACTTTATC+AGG | 0.362455 | 5_4:-28833554 | None:intergenic |
| ATTGGAAATTCAAGTAAATA+TGG | 0.367253 | 5_4:+28833161 | Msa0847250:CDS |
| GAAGAAGGATAAATGAATTT+CGG | 0.372060 | 5_4:-28831539 | None:intergenic |
| ATCTATCAGTACTCTCCTTC+TGG | 0.372524 | 5_4:+28832776 | Msa0847250:CDS |
| AGTAAATATGGTAGTTCAAC+GGG | 0.377045 | 5_4:+28833173 | Msa0847250:CDS |
| CCAAGGACTTTCAGCGGCAT+TGG | 0.377986 | 5_4:+28833143 | Msa0847250:CDS |
| TCCCTTTGAATTTAGGGCAC+TGG | 0.390582 | 5_4:+28832047 | Msa0847250:CDS |
| AACACTCCAACATGTTCTTC+AGG | 0.394266 | 5_4:+28830500 | Msa0847250:five_prime_UTR |
| ATGAATACTTGATTAGTAAA+GGG | 0.394318 | 5_4:+28831225 | Msa0847250:five_prime_UTR |
| GCAATATTTGCCGCCGTGGC+AGG | 0.398522 | 5_4:+28833600 | Msa0847250:CDS |
| AATTTACATGTATCTGTTTG+TGG | 0.422545 | 5_4:+28833853 | Msa0847250:three_prime_UTR |
| ATATCCCGTGCTAGATGAAC+TGG | 0.441183 | 5_4:+28832749 | Msa0847250:CDS |
| ATTTGAAAACAATCATTTGA+AGG | 0.441921 | 5_4:-28833041 | None:intergenic |
| AATGAATACTTGATTAGTAA+AGG | 0.445309 | 5_4:+28831224 | Msa0847250:five_prime_UTR |
| TTTCAAATTCGTTCACCATC+AGG | 0.446404 | 5_4:+28833056 | Msa0847250:CDS |
| CACGATGCCATCATCGCGCT+TGG | 0.448742 | 5_4:+28833939 | Msa0847250:three_prime_UTR |
| TTGTCAACCTTGAACAAATC+CGG | 0.460150 | 5_4:+28831588 | Msa0847250:CDS |
| GATTTGAAAGGTAAATGAAC+TGG | 0.461551 | 5_4:+28832716 | Msa0847250:intron |
| GCATGCGCCAAGCGCGATGA+TGG | 0.466263 | 5_4:-28833946 | None:intergenic |
| CCAATGCCGCTGAAAGTCCT+TGG | 0.466774 | 5_4:-28833143 | None:intergenic |
| TAGGGCACTGGAGTTAGCTC+TGG | 0.466890 | 5_4:+28832059 | Msa0847250:CDS |
| TGGCATCGTGATTGATGAAA+TGG | 0.469563 | 5_4:-28833926 | None:intergenic |
| ACCAAAACAGCAAATTTGAA+TGG | 0.472238 | 5_4:+28834037 | Msa0847250:three_prime_UTR |
| ATGCACATCTTTAGATGCTC+AGG | 0.475093 | 5_4:+28832089 | Msa0847250:CDS |
| GTATCTAAAATAGAATAGTA+AGG | 0.476408 | 5_4:-28833724 | None:intergenic |
| TTAGCAGGCAAGCGAATCGC+AGG | 0.481774 | 5_4:+28831366 | Msa0847250:CDS |
| TTTGACTCAGCGAGTTCAAA+AGG | 0.483080 | 5_4:+28832833 | Msa0847250:CDS |
| TCACCAGAGCGGTCACTTAG+TGG | 0.486329 | 5_4:+28833107 | Msa0847250:CDS |
| CACAGAAAGGATTCAGCCGC+TGG | 0.488174 | 5_4:+28833208 | Msa0847250:CDS |
| GGCCTGAAGCAGAGAGGTCA+TGG | 0.488760 | 5_4:+28831401 | Msa0847250:CDS |
| ATGGGACTGTTGGTCGGTAC+AGG | 0.489528 | 5_4:+28831654 | Msa0847250:CDS |
| CTCCAGTGCCCTAAATTCAA+AGG | 0.497803 | 5_4:-28832049 | None:intergenic |
| TTATACACCGGATTTGTTCA+AGG | 0.499716 | 5_4:-28831595 | None:intergenic |
| TCCCTTCCTAATATGGAAGA+AGG | 0.500264 | 5_4:-28831554 | None:intergenic |
| AAAATCAGACTCATGTAGAC+TGG | 0.504756 | 5_4:-28831345 | None:intergenic |
| AAAGGTAAATGAACTGGAGA+TGG | 0.505002 | 5_4:+28832722 | Msa0847250:intron |
| AATAGTCGAAGATCTCTAGA+AGG | 0.505041 | 5_4:-28831512 | None:intergenic |
| AGGCAAGCGAATCGCAGGGC+TGG | 0.505335 | 5_4:+28831371 | Msa0847250:CDS |
| TCAGCCGCTGGAAATGTTGC+TGG | 0.507132 | 5_4:+28833220 | Msa0847250:CDS |
| AGTGACCGCTCTGGTGAAGT+AGG | 0.509078 | 5_4:-28833101 | None:intergenic |
| GTGACCGCTCTGGTGAAGTA+GGG | 0.510030 | 5_4:-28833100 | None:intergenic |
| TGGTACAAGAAGAGCAGAGA+TGG | 0.513402 | 5_4:-28834018 | None:intergenic |
| ACAGGACAATATTATGCAAT+CGG | 0.514813 | 5_4:+28831672 | Msa0847250:CDS |
| TCCTTCTTCCATATTAGGAA+GGG | 0.517517 | 5_4:+28831553 | Msa0847250:CDS |
| ATCCTTCTTCCATATTAGGA+AGG | 0.519036 | 5_4:+28831552 | Msa0847250:CDS |
| TGATGAAATAGAACATCTCA+TGG | 0.526083 | 5_4:+28832956 | Msa0847250:CDS |
| CTTGTCAAGTGTCACAATCT+CGG | 0.527722 | 5_4:-28831462 | None:intergenic |
| TCCAGTGCCCTAAATTCAAA+GGG | 0.531516 | 5_4:-28832048 | None:intergenic |
| TGACTAGTTCAAAATATCAC+GGG | 0.532726 | 5_4:-28833986 | None:intergenic |
| AGATGTGTCTGACTGAGAAA+AGG | 0.536746 | 5_4:+28833000 | Msa0847250:CDS |
| CAAGAAGAGCAGAGATGGGA+AGG | 0.544888 | 5_4:-28834013 | None:intergenic |
| AAGTAAATATGGTAGTTCAA+CGG | 0.547346 | 5_4:+28833172 | Msa0847250:CDS |
| GGTACAAGAAGAGCAGAGAT+GGG | 0.548971 | 5_4:-28834017 | None:intergenic |
| ATGACTAGTTCAAAATATCA+CGG | 0.553825 | 5_4:-28833987 | None:intergenic |
| TGAATACTTGATTAGTAAAG+GGG | 0.557847 | 5_4:+28831226 | Msa0847250:five_prime_UTR |
| TCTTACAGCAGCCACATTGG+TGG | 0.559109 | 5_4:+28833575 | Msa0847250:CDS |
| GAGGTCATGGAAGTCGGTCA+TGG | 0.561048 | 5_4:+28831414 | Msa0847250:CDS |
| CATCTGTAAAAGTACTGTAT+CGG | 0.563950 | 5_4:+28831262 | Msa0847250:five_prime_UTR |
| GGCCGCAATATTTGCCGCCG+TGG | 0.566381 | 5_4:+28833596 | Msa0847250:CDS |
| AGCCCACTAAGTGACCGCTC+TGG | 0.568756 | 5_4:-28833110 | None:intergenic |
| CACCAGAGCGGTCACTTAGT+GGG | 0.569271 | 5_4:+28833108 | Msa0847250:CDS |
| GAGAACAATATACAATGCAA+TGG | 0.572075 | 5_4:+28831295 | Msa0847250:exon |
| GCATCTCAAACTTTATCAGG+AGG | 0.575972 | 5_4:-28833551 | None:intergenic |
| AATTCACTCGATGGGACTGT+TGG | 0.576318 | 5_4:+28831644 | Msa0847250:CDS |
| TTTATCAAAGATGACAGGAC+TGG | 0.577389 | 5_4:+28833804 | Msa0847250:three_prime_UTR |
| TTCCATATTAGGAAGGGAGA+TGG | 0.579126 | 5_4:+28831559 | Msa0847250:CDS |
| GTGGGCTTCAGATGTTGCCA+AGG | 0.580454 | 5_4:+28833126 | Msa0847250:CDS |
| AAGACAAGACTGCACGTGAA+GGG | 0.583181 | 5_4:-28830477 | None:intergenic |
| AACGTTTCTGCTTTACGACA+AGG | 0.583533 | 5_4:+28830450 | Msa0847250:five_prime_UTR |
| TGCCACGGCGGCAAATATTG+CGG | 0.584897 | 5_4:-28833598 | None:intergenic |
| CGAGATTGTGACACTTGACA+AGG | 0.585644 | 5_4:+28831463 | Msa0847250:CDS |
| GCTTCTTACAGCAGCCACAT+TGG | 0.587792 | 5_4:+28833572 | Msa0847250:CDS |
| TACTCTCAACACATTATCGT+CGG | 0.589716 | 5_4:+28833268 | Msa0847250:CDS |
| TGAGGCCAGTTCATCTAGCA+CGG | 0.589991 | 5_4:-28832754 | None:intergenic |
| TCGTCATGAATTCACTCGAT+GGG | 0.589998 | 5_4:+28831636 | Msa0847250:CDS |
| ATCGTCATGAATTCACTCGA+TGG | 0.592361 | 5_4:+28831635 | Msa0847250:CDS |
| AGCAGAGAGGTCATGGAAGT+CGG | 0.595164 | 5_4:+28831408 | Msa0847250:CDS |
| ACGTTTCTGCTTTACGACAA+GGG | 0.598675 | 5_4:+28830451 | Msa0847250:five_prime_UTR |
| CAAAGAATACATCGACGACA+CGG | 0.599106 | 5_4:+28833383 | Msa0847250:CDS |
| ATTCATGACGATGACTTCAT+CGG | 0.601610 | 5_4:-28831624 | None:intergenic |
| GAGGCCAGTTCATCTAGCAC+GGG | 0.606072 | 5_4:-28832753 | None:intergenic |
| CATGGATGACGATGGTGACA+TGG | 0.607118 | 5_4:+28832974 | Msa0847250:CDS |
| ATCTTCGAACACGTTCCAGA+AGG | 0.609844 | 5_4:-28832791 | None:intergenic |
| CATTCCAAATACTCCTGCCA+CGG | 0.614342 | 5_4:-28833613 | None:intergenic |
| GAACTCGCTGAGTCAAAGCA+AGG | 0.614782 | 5_4:-28832827 | None:intergenic |
| TAGCAGGCAAGCGAATCGCA+GGG | 0.617217 | 5_4:+28831367 | Msa0847250:CDS |
| TGACCGCTCTGGTGAAGTAG+GGG | 0.617312 | 5_4:-28833099 | None:intergenic |
| GTTCATCTGATAACACAGAA+AGG | 0.620976 | 5_4:+28833195 | Msa0847250:CDS |
| CACTCGATGGGACTGTTGGT+CGG | 0.623187 | 5_4:+28831648 | Msa0847250:CDS |
| TTTGAAATCACTCTACCTGA+TGG | 0.628200 | 5_4:-28833071 | None:intergenic |
| AGCCGTGTGAAAACAGCGCT+AGG | 0.633253 | 5_4:-28833884 | None:intergenic |
| TTGATTAGTAAAGGGGATCG+AGG | 0.636285 | 5_4:+28831233 | Msa0847250:five_prime_UTR |
| TGAGATGTTCTATTTCATCA+CGG | 0.640698 | 5_4:-28832953 | None:intergenic |
| TAAGACAAGACTGCACGTGA+AGG | 0.644552 | 5_4:-28830478 | None:intergenic |
| AAGGAGAGTACTGATAGATG+AGG | 0.645637 | 5_4:-28832772 | None:intergenic |
| TAGTTACCTGAAGAACATGT+TGG | 0.645641 | 5_4:-28830506 | None:intergenic |
| AAATATTGCGGCCACCAATG+TGG | 0.649069 | 5_4:-28833586 | None:intergenic |
| TCCAAATACTCCTGCCACGG+CGG | 0.649365 | 5_4:-28833610 | None:intergenic |
| ATGTTGCCAAGGACTTTCAG+CGG | 0.651077 | 5_4:+28833137 | Msa0847250:CDS |
| CATCGGCAGTGATTATACAC+CGG | 0.664675 | 5_4:-28831607 | None:intergenic |
| GCTTCCAGCAACATTTCCAG+CGG | 0.677029 | 5_4:-28833224 | None:intergenic |
| GAACATCTCATGGATGACGA+TGG | 0.697862 | 5_4:+28832966 | Msa0847250:CDS |
| ATGCAATGGAAGAAACACAA+GGG | 0.707744 | 5_4:+28831309 | Msa0847250:exon |
| ATAAAAGGCCTGAAGCAGAG+AGG | 0.740166 | 5_4:+28831395 | Msa0847250:CDS |
| AATGCAATGGAAGAAACACA+AGG | 0.757246 | 5_4:+28831308 | Msa0847250:exon |
| CAGCCCCTACTTCACCAGAG+CGG | 0.766346 | 5_4:+28833096 | Msa0847250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACGAAATATTTATTTATAT+TGG | + | chr5_4:28831756-28831775 | Msa0847250:intron | 10.0% |
| !! | AATTATGTTTACATTAAAAT+TGG | + | chr5_4:28832186-28832205 | Msa0847250:intron | 10.0% |
| !!! | TATTTTATAGAAATAGTGAT+TGG | + | chr5_4:28830568-28830587 | Msa0847250:intron | 15.0% |
| !!! | ATTTTATAGAAATAGTGATT+GGG | + | chr5_4:28830569-28830588 | Msa0847250:intron | 15.0% |
| !! | TCAAATATGTTATATTAAGA+AGG | + | chr5_4:28832688-28832707 | Msa0847250:intron | 15.0% |
| !! | AAGAAAGAGAATTATAATTA+AGG | - | chr5_4:28832881-28832900 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTTTTTGGG+TGG | - | chr5_4:28830372-28830391 | None:intergenic | 20.0% |
| !!! | TTTTATAGAAATAGTGATTG+GGG | + | chr5_4:28830570-28830589 | Msa0847250:intron | 20.0% |
| !!! | TTATATCTTGTTTGAAACTT+AGG | + | chr5_4:28830608-28830627 | Msa0847250:intron | 20.0% |
| !!! | TATATCTTGTTTGAAACTTA+GGG | + | chr5_4:28830609-28830628 | Msa0847250:intron | 20.0% |
| !! | TATCCTCATAAAATTTAATC+TGG | + | chr5_4:28830769-28830788 | Msa0847250:intron | 20.0% |
| !! | ATCCTCATAAAATTTAATCT+GGG | + | chr5_4:28830770-28830789 | Msa0847250:intron | 20.0% |
| !! | AATGAATACTTGATTAGTAA+AGG | + | chr5_4:28831224-28831243 | Msa0847250:five_prime_UTR | 20.0% |
| !! | ATGAATACTTGATTAGTAAA+GGG | + | chr5_4:28831225-28831244 | Msa0847250:five_prime_UTR | 20.0% |
| !!! | TAACCAGAAATTTTACTTTT+TGG | + | chr5_4:28832119-28832138 | Msa0847250:intron | 20.0% |
| !!! | AACCAGAAATTTTACTTTTT+GGG | + | chr5_4:28832120-28832139 | Msa0847250:intron | 20.0% |
| !! | TTTCACTTTAATGAAAATGA+AGG | + | chr5_4:28832362-28832381 | Msa0847250:intron | 20.0% |
| !! | TAAGATAAAAGAAATCAGTA+TGG | + | chr5_4:28832466-28832485 | Msa0847250:intron | 20.0% |
| !! | AAGATAAAAGAAATCAGTAT+GGG | + | chr5_4:28832467-28832486 | Msa0847250:intron | 20.0% |
| !!! | AATTTTCTAAAAAAGTCATC+AGG | - | chr5_4:28832523-28832542 | None:intergenic | 20.0% |
| !!! | TAATATCAGTGTTTGAATTT+TGG | + | chr5_4:28832558-28832577 | Msa0847250:intron | 20.0% |
| !! | CTAAATACATAATAAGTCAT+TGG | + | chr5_4:28832626-28832645 | Msa0847250:intron | 20.0% |
| !! | GTAACTTATATTTAGTTATC+AGG | + | chr5_4:28832929-28832948 | Msa0847250:intron | 20.0% |
| !! | ATTTGAAAACAATCATTTGA+AGG | - | chr5_4:28833044-28833063 | None:intergenic | 20.0% |
| !! | ATTGGAAATTCAAGTAAATA+TGG | + | chr5_4:28833161-28833180 | Msa0847250:CDS | 20.0% |
| !!! | AGATTTTCTCAACATAAAAT+TGG | + | chr5_4:28833407-28833426 | Msa0847250:CDS | 20.0% |
| !! | ATATGATATAAAGTGACAAA+AGG | - | chr5_4:28833460-28833479 | None:intergenic | 20.0% |
| !!! | GTATCTAAAATAGAATAGTA+AGG | - | chr5_4:28833727-28833746 | None:intergenic | 20.0% |
| !!! | TTAATTTTATCAAAGATGAC+AGG | + | chr5_4:28833799-28833818 | Msa0847250:three_prime_UTR | 20.0% |
| !!! | TACTGACAAATCTTTTTTTG+AGG | + | chr5_4:28830527-28830546 | Msa0847250:intron | 25.0% |
| ! | TTTATAGAAATAGTGATTGG+GGG | + | chr5_4:28830571-28830590 | Msa0847250:intron | 25.0% |
| !! | ATATCTTGTTTGAAACTTAG+GGG | + | chr5_4:28830610-28830629 | Msa0847250:intron | 25.0% |
| !! | AACCCAGATTAAATTTTATG+AGG | - | chr5_4:28830775-28830794 | None:intergenic | 25.0% |
| ! | ATTACATGAAATTCAGCTAT+TGG | + | chr5_4:28830863-28830882 | Msa0847250:intron | 25.0% |
| !! | TCATTTTCTCGACTTATTAT+TGG | + | chr5_4:28831027-28831046 | Msa0847250:intron | 25.0% |
| !!! | CTTCCTTTTTTGTTGATTAA+AGG | + | chr5_4:28831191-28831210 | Msa0847250:intron | 25.0% |
| ! | CAACCTTTAATCAACAAAAA+AGG | - | chr5_4:28831197-28831216 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGATTAAAGGTTG+TGG | + | chr5_4:28831197-28831216 | Msa0847250:intron | 25.0% |
| ! | TGAATACTTGATTAGTAAAG+GGG | + | chr5_4:28831226-28831245 | Msa0847250:five_prime_UTR | 25.0% |
| ! | GAAGAAGGATAAATGAATTT+CGG | - | chr5_4:28831542-28831561 | None:intergenic | 25.0% |
| ! | ATTTATCCTTCTTCCATATT+AGG | + | chr5_4:28831548-28831567 | Msa0847250:CDS | 25.0% |
| ! | TTATAGTTTACAGCAAAAAG+AGG | - | chr5_4:28831729-28831748 | None:intergenic | 25.0% |
| !!! | ACCAGAAATTTTACTTTTTG+GGG | + | chr5_4:28832121-28832140 | Msa0847250:intron | 25.0% |
| ! | CAATTTCATTAAACATCCTA+TGG | + | chr5_4:28832267-28832286 | Msa0847250:intron | 25.0% |
| ! | TGAAAAATGTAAAAGATTGC+AGG | - | chr5_4:28832347-28832366 | None:intergenic | 25.0% |
| ! | TCAAACACTGATATTAAGTT+TGG | - | chr5_4:28832554-28832573 | None:intergenic | 25.0% |
| ! | AAATATAAGTTACTAGTTGC+AGG | - | chr5_4:28832922-28832941 | None:intergenic | 25.0% |
| ! | AAGTAAATATGGTAGTTCAA+CGG | + | chr5_4:28833172-28833191 | Msa0847250:CDS | 25.0% |
| ! | ATTATAAACTATGTAGACCA+CGG | + | chr5_4:28833484-28833503 | Msa0847250:intron | 25.0% |
| !! | TTTTCAATCTATCTGTTACA+GGG | + | chr5_4:28833516-28833535 | Msa0847250:intron | 25.0% |
| ! | AATTTACATGTATCTGTTTG+TGG | + | chr5_4:28833853-28833872 | Msa0847250:three_prime_UTR | 25.0% |
| !! | ATGACTAGTTCAAAATATCA+CGG | - | chr5_4:28833990-28834009 | None:intergenic | 25.0% |
| ! | TACAGATTTGTAAAACTAAC+TGG | - | chr5_4:28834069-28834088 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGGGTGGTGTA+AGG | - | chr5_4:28830365-28830384 | None:intergenic | 30.0% |
| ! | TTTCGTAATTGTTTCTCACT+TGG | + | chr5_4:28830712-28830731 | Msa0847250:intron | 30.0% |
| ! | TTCGTAATTGTTTCTCACTT+GGG | + | chr5_4:28830713-28830732 | Msa0847250:intron | 30.0% |
| GTACTCATACTTCTTATTGA+AGG | + | chr5_4:28830941-28830960 | Msa0847250:intron | 30.0% | |
| TTCGTAGAAGTTAAAGAGTT+GGG | + | chr5_4:28831079-28831098 | Msa0847250:intron | 30.0% | |
| !!! | AAAGAGTTGGGTTTTGAATA+CGG | + | chr5_4:28831091-28831110 | Msa0847250:intron | 30.0% |
| !! | GTAATTAACTGAGTATTGGT+TGG | + | chr5_4:28831114-28831133 | Msa0847250:intron | 30.0% |
| ! | ATACAGTACTTTTACAGATG+AGG | - | chr5_4:28831262-28831281 | None:intergenic | 30.0% |
| !! | CATCTGTAAAAGTACTGTAT+CGG | + | chr5_4:28831262-28831281 | Msa0847250:five_prime_UTR | 30.0% |
| GAGAACAATATACAATGCAA+TGG | + | chr5_4:28831295-28831314 | Msa0847250:exon | 30.0% | |
| GTCATGGATAAAAATTGATC+AGG | + | chr5_4:28831430-28831449 | Msa0847250:CDS | 30.0% | |
| TGGATAAAAATTGATCAGGA+TGG | + | chr5_4:28831434-28831453 | Msa0847250:CDS | 30.0% | |
| GGATAAAAATTGATCAGGAT+GGG | + | chr5_4:28831435-28831454 | Msa0847250:CDS | 30.0% | |
| ACAGGACAATATTATGCAAT+CGG | + | chr5_4:28831672-28831691 | Msa0847250:CDS | 30.0% | |
| ! | TGTTGCAATTTGTTTCTTGA+AGG | + | chr5_4:28831914-28831933 | Msa0847250:intron | 30.0% |
| TACTCCATATAATTGCTTAC+TGG | + | chr5_4:28832000-28832019 | Msa0847250:intron | 30.0% | |
| GAAACCAGTAAGCAATTATA+TGG | - | chr5_4:28832007-28832026 | None:intergenic | 30.0% | |
| ATGATCTTCCCTTTGAATTT+AGG | + | chr5_4:28832040-28832059 | Msa0847250:CDS | 30.0% | |
| TGATCTTCCCTTTGAATTTA+GGG | + | chr5_4:28832041-28832060 | Msa0847250:CDS | 30.0% | |
| TCCCCAAAAAGTAAAATTTC+TGG | - | chr5_4:28832125-28832144 | None:intergenic | 30.0% | |
| ACAGATTCAATGCAAAAATG+TGG | - | chr5_4:28832150-28832169 | None:intergenic | 30.0% | |
| AGGGAGAGAATATAATGTTT+AGG | + | chr5_4:28832429-28832448 | Msa0847250:intron | 30.0% | |
| GGGAGAGAATATAATGTTTA+GGG | + | chr5_4:28832430-28832449 | Msa0847250:intron | 30.0% | |
| ATTGATGTCTTGTGCAAATA+TGG | - | chr5_4:28832664-28832683 | None:intergenic | 30.0% | |
| ! | AAGAAGGATCTTGATTTGAA+AGG | + | chr5_4:28832704-28832723 | Msa0847250:intron | 30.0% |
| GATTTGAAAGGTAAATGAAC+TGG | + | chr5_4:28832716-28832735 | Msa0847250:intron | 30.0% | |
| TGAGATGTTCTATTTCATCA+CGG | - | chr5_4:28832956-28832975 | None:intergenic | 30.0% | |
| TGATGAAATAGAACATCTCA+TGG | + | chr5_4:28832956-28832975 | Msa0847250:CDS | 30.0% | |
| AGTAAATATGGTAGTTCAAC+GGG | + | chr5_4:28833173-28833192 | Msa0847250:CDS | 30.0% | |
| TCAATGAAGATAAGCAATGT+CGG | - | chr5_4:28833338-28833357 | None:intergenic | 30.0% | |
| ! | TTCATTGATAATACTCTTGC+TGG | + | chr5_4:28833350-28833369 | Msa0847250:intron | 30.0% |
| ATTGAAAAGTTTATAGTCCG+TGG | - | chr5_4:28833504-28833523 | None:intergenic | 30.0% | |
| ! | CTTTTCAATCTATCTGTTAC+AGG | + | chr5_4:28833515-28833534 | Msa0847250:intron | 30.0% |
| !! | TTCTGGATTCAATTTGGTTT+TGG | + | chr5_4:28833665-28833684 | Msa0847250:CDS | 30.0% |
| !!! | AATTTGGTTTTGGTAGTTAC+TGG | + | chr5_4:28833675-28833694 | Msa0847250:CDS | 30.0% |
| ! | TGACTAGTTCAAAATATCAC+GGG | - | chr5_4:28833989-28834008 | None:intergenic | 30.0% |
| ACCAAAACAGCAAATTTGAA+TGG | + | chr5_4:28834037-28834056 | Msa0847250:three_prime_UTR | 30.0% | |
| !!! | ACCATTCAAATTTGCTGTTT+TGG | - | chr5_4:28834041-28834060 | None:intergenic | 30.0% |
| !! | CACGAACTTGTTTGTTTTTC+AGG | - | chr5_4:28830400-28830419 | None:intergenic | 35.0% |
| CTGAAAAACAAACAAGTTCG+TGG | + | chr5_4:28830398-28830417 | Msa0847250:five_prime_UTR | 35.0% | |
| TAGTTACCTGAAGAACATGT+TGG | - | chr5_4:28830509-28830528 | None:intergenic | 35.0% | |
| ! | TGTTTGAAACTTAGGGGAAA+TGG | + | chr5_4:28830616-28830635 | Msa0847250:intron | 35.0% |
| ! | GTTTGAAACTTAGGGGAAAT+GGG | + | chr5_4:28830617-28830636 | Msa0847250:intron | 35.0% |
| CTTCGTAGAAGTTAAAGAGT+TGG | + | chr5_4:28831078-28831097 | Msa0847250:intron | 35.0% | |
| !!! | AAGAGTTGGGTTTTGAATAC+GGG | + | chr5_4:28831092-28831111 | Msa0847250:intron | 35.0% |
| ACGGGTAATTAACTGAGTAT+TGG | + | chr5_4:28831110-28831129 | Msa0847250:intron | 35.0% | |
| AATGCAATGGAAGAAACACA+AGG | + | chr5_4:28831308-28831327 | Msa0847250:exon | 35.0% | |
| ATGCAATGGAAGAAACACAA+GGG | + | chr5_4:28831309-28831328 | Msa0847250:exon | 35.0% | |
| AAAATCAGACTCATGTAGAC+TGG | - | chr5_4:28831348-28831367 | None:intergenic | 35.0% | |
| !! | TACATGAGTCTGATTTTAGC+AGG | + | chr5_4:28831351-28831370 | Msa0847250:CDS | 35.0% |
| AATAGTCGAAGATCTCTAGA+AGG | - | chr5_4:28831515-28831534 | None:intergenic | 35.0% | |
| ! | TTCTAGAGATCTTCGACTAT+TGG | + | chr5_4:28831514-28831533 | Msa0847250:CDS | 35.0% |
| ATCCTTCTTCCATATTAGGA+AGG | + | chr5_4:28831552-28831571 | Msa0847250:CDS | 35.0% | |
| TCCTTCTTCCATATTAGGAA+GGG | + | chr5_4:28831553-28831572 | Msa0847250:CDS | 35.0% | |
| TTGTCAACCTTGAACAAATC+CGG | + | chr5_4:28831588-28831607 | Msa0847250:CDS | 35.0% | |
| ! | TTATACACCGGATTTGTTCA+AGG | - | chr5_4:28831598-28831617 | None:intergenic | 35.0% |
| ATTCATGACGATGACTTCAT+CGG | - | chr5_4:28831627-28831646 | None:intergenic | 35.0% | |
| CAGAGAGAAAAATCTGGTAA+GGG | + | chr5_4:28831698-28831717 | Msa0847250:intron | 35.0% | |
| GCACTATTAGAAAATCGTAG+TGG | + | chr5_4:28831786-28831805 | Msa0847250:intron | 35.0% | |
| ! | ATCGTAGTGGAAGAATTATG+AGG | + | chr5_4:28831799-28831818 | Msa0847250:intron | 35.0% |
| ! | TCGTAGTGGAAGAATTATGA+GGG | + | chr5_4:28831800-28831819 | Msa0847250:intron | 35.0% |
| ! | TGAAATGGGATGTCTTTTGT+TGG | + | chr5_4:28831839-28831858 | Msa0847250:intron | 35.0% |
| AACAAGCAAGCAGATAAACT+CGG | - | chr5_4:28832217-28832236 | None:intergenic | 35.0% | |
| AGTTTATCTGCTTGCTTGTT+TGG | + | chr5_4:28832217-28832236 | Msa0847250:intron | 35.0% | |
| GAAATTGCAGGAAAAACCAT+AGG | - | chr5_4:28832286-28832305 | None:intergenic | 35.0% | |
| ! | TGTGAATTGTCTGAAATTGC+AGG | - | chr5_4:28832298-28832317 | None:intergenic | 35.0% |
| TTGTAGCACTCAAGATATGT+AGG | + | chr5_4:28832409-28832428 | Msa0847250:intron | 35.0% | |
| TGTAGCACTCAAGATATGTA+GGG | + | chr5_4:28832410-28832429 | Msa0847250:intron | 35.0% | |
| AAAGGTAAATGAACTGGAGA+TGG | + | chr5_4:28832722-28832741 | Msa0847250:intron | 35.0% | |
| GAACGTGTTCGAAGATTTAA+AGG | + | chr5_4:28832798-28832817 | Msa0847250:CDS | 35.0% | |
| TTTCAAATTCGTTCACCATC+AGG | + | chr5_4:28833056-28833075 | Msa0847250:CDS | 35.0% | |
| ! | TTTGAAATCACTCTACCTGA+TGG | - | chr5_4:28833074-28833093 | None:intergenic | 35.0% |
| GTTCATCTGATAACACAGAA+AGG | + | chr5_4:28833195-28833214 | Msa0847250:CDS | 35.0% | |
| TACTCTCAACACATTATCGT+CGG | + | chr5_4:28833268-28833287 | Msa0847250:CDS | 35.0% | |
| ! | GAAGCATCTCAAACTTTATC+AGG | - | chr5_4:28833557-28833576 | None:intergenic | 35.0% |
| AGAAGAGTAGTCAAAAACTG+AGG | - | chr5_4:28833649-28833668 | None:intergenic | 35.0% | |
| !! | TCAGTTTTTGACTACTCTTC+TGG | + | chr5_4:28833648-28833667 | Msa0847250:CDS | 35.0% |
| CTACTCTTCTGGATTCAATT+TGG | + | chr5_4:28833659-28833678 | Msa0847250:CDS | 35.0% | |
| !! | GTTTTGGTAGTTACTGGAAT+TGG | + | chr5_4:28833681-28833700 | Msa0847250:CDS | 35.0% |
| ! | ATGCTGTTGAGTTTTCATTC+TGG | - | chr5_4:28833762-28833781 | None:intergenic | 35.0% |
| TTTATCAAAGATGACAGGAC+TGG | + | chr5_4:28833804-28833823 | Msa0847250:three_prime_UTR | 35.0% | |
| AACGTTTCTGCTTTACGACA+AGG | + | chr5_4:28830450-28830469 | Msa0847250:five_prime_UTR | 40.0% | |
| ACGTTTCTGCTTTACGACAA+GGG | + | chr5_4:28830451-28830470 | Msa0847250:five_prime_UTR | 40.0% | |
| AACACTCCAACATGTTCTTC+AGG | + | chr5_4:28830500-28830519 | Msa0847250:five_prime_UTR | 40.0% | |
| ATAGAAATAGTGATTGGGGG+TGG | + | chr5_4:28830574-28830593 | Msa0847250:intron | 40.0% | |
| TAGAAATAGTGATTGGGGGT+GGG | + | chr5_4:28830575-28830594 | Msa0847250:intron | 40.0% | |
| TGTTCTTGTGCATAGAAGCT+TGG | + | chr5_4:28830799-28830818 | Msa0847250:intron | 40.0% | |
| TTGATTAGTAAAGGGGATCG+AGG | + | chr5_4:28831233-28831252 | Msa0847250:five_prime_UTR | 40.0% | |
| CTTGTCAAGTGTCACAATCT+CGG | - | chr5_4:28831465-28831484 | None:intergenic | 40.0% | |
| TCCCTTCCTAATATGGAAGA+AGG | - | chr5_4:28831557-28831576 | None:intergenic | 40.0% | |
| TTCCATATTAGGAAGGGAGA+TGG | + | chr5_4:28831559-28831578 | Msa0847250:CDS | 40.0% | |
| ATCGTCATGAATTCACTCGA+TGG | + | chr5_4:28831635-28831654 | Msa0847250:CDS | 40.0% | |
| TCGTCATGAATTCACTCGAT+GGG | + | chr5_4:28831636-28831655 | Msa0847250:CDS | 40.0% | |
| ! | CCTTACCAGATTTTTCTCTC+TGG | - | chr5_4:28831700-28831719 | None:intergenic | 40.0% |
| CCAGAGAGAAAAATCTGGTA+AGG | + | chr5_4:28831697-28831716 | Msa0847250:intron | 40.0% | |
| GTGGAAGAATTATGAGGGTA+AGG | + | chr5_4:28831805-28831824 | Msa0847250:intron | 40.0% | |
| !! | AAGGCATTGAGTGTGTGAAA+TGG | + | chr5_4:28831824-28831843 | Msa0847250:intron | 40.0% |
| !! | AGGCATTGAGTGTGTGAAAT+GGG | + | chr5_4:28831825-28831844 | Msa0847250:intron | 40.0% |
| TCCAGTGCCCTAAATTCAAA+GGG | - | chr5_4:28832051-28832070 | None:intergenic | 40.0% | |
| ATGCACATCTTTAGATGCTC+AGG | + | chr5_4:28832089-28832108 | Msa0847250:CDS | 40.0% | |
| TGAAGGCTGCTAAAATCTCT+AGG | + | chr5_4:28832379-28832398 | Msa0847250:intron | 40.0% | |
| !! | AAGGAGAGTACTGATAGATG+AGG | - | chr5_4:28832775-28832794 | None:intergenic | 40.0% |
| ATCTATCAGTACTCTCCTTC+TGG | + | chr5_4:28832776-28832795 | Msa0847250:CDS | 40.0% | |
| TTTGACTCAGCGAGTTCAAA+AGG | + | chr5_4:28832833-28832852 | Msa0847250:CDS | 40.0% | |
| ! | GTTCAAAAGGTTGATCAACG+TGG | + | chr5_4:28832846-28832865 | Msa0847250:intron | 40.0% |
| AGATGTGTCTGACTGAGAAA+AGG | + | chr5_4:28833000-28833019 | Msa0847250:CDS | 40.0% | |
| CAAAGAATACATCGACGACA+CGG | + | chr5_4:28833383-28833402 | Msa0847250:CDS | 40.0% | |
| GCATCTCAAACTTTATCAGG+AGG | - | chr5_4:28833554-28833573 | None:intergenic | 40.0% | |
| TGGCATCGTGATTGATGAAA+TGG | - | chr5_4:28833929-28833948 | None:intergenic | 40.0% | |
| AAGACAAGACTGCACGTGAA+GGG | - | chr5_4:28830480-28830499 | None:intergenic | 45.0% | |
| TAAGACAAGACTGCACGTGA+AGG | - | chr5_4:28830481-28830500 | None:intergenic | 45.0% | |
| ! | CTTCTTATTGAAGGCGTACC+TGG | + | chr5_4:28830950-28830969 | Msa0847250:intron | 45.0% |
| ACTAACACATGTCAGACACC+AGG | - | chr5_4:28830971-28830990 | None:intergenic | 45.0% | |
| ! | AATCGCAGGGCTGGTATAAA+AGG | + | chr5_4:28831380-28831399 | Msa0847250:CDS | 45.0% |
| ATAAAAGGCCTGAAGCAGAG+AGG | + | chr5_4:28831395-28831414 | Msa0847250:CDS | 45.0% | |
| CGAGATTGTGACACTTGACA+AGG | + | chr5_4:28831463-28831482 | Msa0847250:CDS | 45.0% | |
| AGCCATCTCCCTTCCTAATA+TGG | - | chr5_4:28831564-28831583 | None:intergenic | 45.0% | |
| CATCGGCAGTGATTATACAC+CGG | - | chr5_4:28831610-28831629 | None:intergenic | 45.0% | |
| AATTCACTCGATGGGACTGT+TGG | + | chr5_4:28831644-28831663 | Msa0847250:CDS | 45.0% | |
| ! | TCCCTTTGAATTTAGGGCAC+TGG | + | chr5_4:28832047-28832066 | Msa0847250:CDS | 45.0% |
| CTCCAGTGCCCTAAATTCAA+AGG | - | chr5_4:28832052-28832071 | None:intergenic | 45.0% | |
| ATATCCCGTGCTAGATGAAC+TGG | + | chr5_4:28832749-28832768 | Msa0847250:CDS | 45.0% | |
| ATCTTCGAACACGTTCCAGA+AGG | - | chr5_4:28832794-28832813 | None:intergenic | 45.0% | |
| GAACATCTCATGGATGACGA+TGG | + | chr5_4:28832966-28832985 | Msa0847250:CDS | 45.0% | |
| ATGTTGCCAAGGACTTTCAG+CGG | + | chr5_4:28833137-28833156 | Msa0847250:CDS | 45.0% | |
| AAATATTGCGGCCACCAATG+TGG | - | chr5_4:28833589-28833608 | None:intergenic | 45.0% | |
| CATTCCAAATACTCCTGCCA+CGG | - | chr5_4:28833616-28833635 | None:intergenic | 45.0% | |
| !! | ATCCTAGCGCTGTTTTCACA+CGG | + | chr5_4:28833882-28833901 | Msa0847250:three_prime_UTR | 45.0% |
| GGTACAAGAAGAGCAGAGAT+GGG | - | chr5_4:28834020-28834039 | None:intergenic | 45.0% | |
| TGGTACAAGAAGAGCAGAGA+TGG | - | chr5_4:28834021-28834040 | None:intergenic | 45.0% | |
| !!! | AAATGTTTTTTTTTTTTTTT+GGG | - | chr5_4:28830375-28830394 | None:intergenic | 5.0% |
| !!! | AAAATGTTTTTTTTTTTTTT+TGG | - | chr5_4:28830376-28830395 | None:intergenic | 5.0% |
| !! | AAATTACAATAAAAATAAAT+TGG | - | chr5_4:28830911-28830930 | None:intergenic | 5.0% |
| ATAGTGATTGGGGGTGGGTA+AGG | + | chr5_4:28830580-28830599 | Msa0847250:intron | 50.0% | |
| TAGTGATTGGGGGTGGGTAA+GGG | + | chr5_4:28830581-28830600 | Msa0847250:intron | 50.0% | |
| TTCCATGACCTCTCTGCTTC+AGG | - | chr5_4:28831406-28831425 | None:intergenic | 50.0% | |
| AGCAGAGAGGTCATGGAAGT+CGG | + | chr5_4:28831408-28831427 | Msa0847250:CDS | 50.0% | |
| CGGCTCCAGAGAGAAAAATC+TGG | + | chr5_4:28831692-28831711 | Msa0847250:CDS | 50.0% | |
| TGAGGCCAGTTCATCTAGCA+CGG | - | chr5_4:28832757-28832776 | None:intergenic | 50.0% | |
| GAACTCGCTGAGTCAAAGCA+AGG | - | chr5_4:28832830-28832849 | None:intergenic | 50.0% | |
| CATGGATGACGATGGTGACA+TGG | + | chr5_4:28832974-28832993 | Msa0847250:CDS | 50.0% | |
| GCTTCCAGCAACATTTCCAG+CGG | - | chr5_4:28833227-28833246 | None:intergenic | 50.0% | |
| GCTTCTTACAGCAGCCACAT+TGG | + | chr5_4:28833572-28833591 | Msa0847250:CDS | 50.0% | |
| TCTTACAGCAGCCACATTGG+TGG | + | chr5_4:28833575-28833594 | Msa0847250:CDS | 50.0% | |
| CAAGAAGAGCAGAGATGGGA+AGG | - | chr5_4:28834016-28834035 | None:intergenic | 50.0% | |
| TTAGCAGGCAAGCGAATCGC+AGG | + | chr5_4:28831366-28831385 | Msa0847250:CDS | 55.0% | |
| TAGCAGGCAAGCGAATCGCA+GGG | + | chr5_4:28831367-28831386 | Msa0847250:CDS | 55.0% | |
| GAGGTCATGGAAGTCGGTCA+TGG | + | chr5_4:28831414-28831433 | Msa0847250:CDS | 55.0% | |
| CACTCGATGGGACTGTTGGT+CGG | + | chr5_4:28831648-28831667 | Msa0847250:CDS | 55.0% | |
| ATGGGACTGTTGGTCGGTAC+AGG | + | chr5_4:28831654-28831673 | Msa0847250:CDS | 55.0% | |
| !! | TAGGGCACTGGAGTTAGCTC+TGG | + | chr5_4:28832059-28832078 | Msa0847250:CDS | 55.0% |
| GAGGCCAGTTCATCTAGCAC+GGG | - | chr5_4:28832756-28832775 | None:intergenic | 55.0% | |
| TGACCGCTCTGGTGAAGTAG+GGG | - | chr5_4:28833102-28833121 | None:intergenic | 55.0% | |
| GTGACCGCTCTGGTGAAGTA+GGG | - | chr5_4:28833103-28833122 | None:intergenic | 55.0% | |
| AGTGACCGCTCTGGTGAAGT+AGG | - | chr5_4:28833104-28833123 | None:intergenic | 55.0% | |
| TCACCAGAGCGGTCACTTAG+TGG | + | chr5_4:28833107-28833126 | Msa0847250:CDS | 55.0% | |
| CACCAGAGCGGTCACTTAGT+GGG | + | chr5_4:28833108-28833127 | Msa0847250:CDS | 55.0% | |
| GTGGGCTTCAGATGTTGCCA+AGG | + | chr5_4:28833126-28833145 | Msa0847250:CDS | 55.0% | |
| CCAATGCCGCTGAAAGTCCT+TGG | - | chr5_4:28833146-28833165 | None:intergenic | 55.0% | |
| CCAAGGACTTTCAGCGGCAT+TGG | + | chr5_4:28833143-28833162 | Msa0847250:CDS | 55.0% | |
| CACAGAAAGGATTCAGCCGC+TGG | + | chr5_4:28833208-28833227 | Msa0847250:CDS | 55.0% | |
| TCAGCCGCTGGAAATGTTGC+TGG | + | chr5_4:28833220-28833239 | Msa0847250:CDS | 55.0% | |
| TGCCACGGCGGCAAATATTG+CGG | - | chr5_4:28833601-28833620 | None:intergenic | 55.0% | |
| TCCAAATACTCCTGCCACGG+CGG | - | chr5_4:28833613-28833632 | None:intergenic | 55.0% | |
| AGCCGTGTGAAAACAGCGCT+AGG | - | chr5_4:28833887-28833906 | None:intergenic | 55.0% | |
| TGATTGGGGGTGGGTAAGGG+TGG | + | chr5_4:28830584-28830603 | Msa0847250:intron | 60.0% | |
| GGCCTGAAGCAGAGAGGTCA+TGG | + | chr5_4:28831401-28831420 | Msa0847250:CDS | 60.0% | |
| CAGCCCCTACTTCACCAGAG+CGG | + | chr5_4:28833096-28833115 | Msa0847250:CDS | 60.0% | |
| AGCCCACTAAGTGACCGCTC+TGG | - | chr5_4:28833113-28833132 | None:intergenic | 60.0% | |
| GCAATATTTGCCGCCGTGGC+AGG | + | chr5_4:28833600-28833619 | Msa0847250:CDS | 60.0% | |
| CACGATGCCATCATCGCGCT+TGG | + | chr5_4:28833939-28833958 | Msa0847250:three_prime_UTR | 60.0% | |
| AGGCAAGCGAATCGCAGGGC+TGG | + | chr5_4:28831371-28831390 | Msa0847250:CDS | 65.0% | |
| GGCCGCAATATTTGCCGCCG+TGG | + | chr5_4:28833596-28833615 | Msa0847250:CDS | 65.0% | |
| !! | GCCGCCGTGGCAGGAGTATT+TGG | + | chr5_4:28833609-28833628 | Msa0847250:CDS | 65.0% |
| GCATGCGCCAAGCGCGATGA+TGG | - | chr5_4:28833949-28833968 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 28830356 | 28834108 | 28830356 | ID=Msa0847250;Name=Msa0847250 |
| chr5_4 | mRNA | 28830356 | 28834108 | 28830356 | ID=Msa0847250-mRNA-1;Parent=Msa0847250;Name=Msa0847250-mRNA-1;_AED=0.10;_eAED=0.10;_QI=267|1|1|1|1|1|7|341|405 |
| chr5_4 | exon | 28830356 | 28830521 | 28830356 | ID=Msa0847250-mRNA-1:exon:10811;Parent=Msa0847250-mRNA-1 |
| chr5_4 | exon | 28831213 | 28831713 | 28831213 | ID=Msa0847250-mRNA-1:exon:10812;Parent=Msa0847250-mRNA-1 |
| chr5_4 | exon | 28832040 | 28832110 | 28832040 | ID=Msa0847250-mRNA-1:exon:10813;Parent=Msa0847250-mRNA-1 |
| chr5_4 | exon | 28832726 | 28832854 | 28832726 | ID=Msa0847250-mRNA-1:exon:10814;Parent=Msa0847250-mRNA-1 |
| chr5_4 | exon | 28832951 | 28833289 | 28832951 | ID=Msa0847250-mRNA-1:exon:10815;Parent=Msa0847250-mRNA-1 |
| chr5_4 | exon | 28833381 | 28833428 | 28833381 | ID=Msa0847250-mRNA-1:exon:10816;Parent=Msa0847250-mRNA-1 |
| chr5_4 | exon | 28833537 | 28834108 | 28833537 | ID=Msa0847250-mRNA-1:exon:10817;Parent=Msa0847250-mRNA-1 |
| chr5_4 | five_prime_UTR | 28830356 | 28830521 | 28830356 | ID=Msa0847250-mRNA-1:five_prime_utr;Parent=Msa0847250-mRNA-1 |
| chr5_4 | five_prime_UTR | 28831213 | 28831313 | 28831213 | ID=Msa0847250-mRNA-1:five_prime_utr;Parent=Msa0847250-mRNA-1 |
| chr5_4 | CDS | 28831314 | 28831713 | 28831314 | ID=Msa0847250-mRNA-1:cds;Parent=Msa0847250-mRNA-1 |
| chr5_4 | CDS | 28832040 | 28832110 | 28832040 | ID=Msa0847250-mRNA-1:cds;Parent=Msa0847250-mRNA-1 |
| chr5_4 | CDS | 28832726 | 28832854 | 28832726 | ID=Msa0847250-mRNA-1:cds;Parent=Msa0847250-mRNA-1 |
| chr5_4 | CDS | 28832951 | 28833289 | 28832951 | ID=Msa0847250-mRNA-1:cds;Parent=Msa0847250-mRNA-1 |
| chr5_4 | CDS | 28833381 | 28833428 | 28833381 | ID=Msa0847250-mRNA-1:cds;Parent=Msa0847250-mRNA-1 |
| chr5_4 | CDS | 28833537 | 28833767 | 28833537 | ID=Msa0847250-mRNA-1:cds;Parent=Msa0847250-mRNA-1 |
| chr5_4 | three_prime_UTR | 28833768 | 28834108 | 28833768 | ID=Msa0847250-mRNA-1:three_prime_utr;Parent=Msa0847250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
