AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647830 MtrunA17_Chr4g0039181 92.883 829 34 4 1 808 16 840 0.0 1556
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 168 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTTACAAAATTAT+TGG 0.135381 4_3:+54001676 Msa0647830:three_prime_UTR
TTGGCTGGTCATTCTCTTAT+AGG 0.219569 4_3:-54001747 None:intergenic
TATAACTGTTCCAGGAAAAT+TGG 0.221427 4_3:-54000654 None:intergenic
ACTCCAGACTTTATAAATAT+TGG 0.228725 4_3:-53996977 None:intergenic
TTATTCATGGTTGATACTTT+TGG 0.263688 4_3:+53999638 Msa0647830:CDS
AGCAGAAAACTGATAGGTTT+TGG 0.269735 4_3:+53996201 Msa0647830:CDS
TAGTTGATCAAGAATTATTC+AGG 0.271460 4_3:+54000528 Msa0647830:CDS
TTCACCTTTGATACCATCTA+AGG 0.275783 4_3:+53997988 Msa0647830:CDS
ACTAGCTGGTGCATCTAATA+TGG 0.276006 4_3:-53999237 None:intergenic
GTTAACTGACCTAATTGTTT+TGG 0.276257 4_3:-53998434 None:intergenic
TATTACTTATCTCTAGAAAA+AGG 0.291210 4_3:+53999395 Msa0647830:CDS
ATAAGTAATAATGATGTTCT+TGG 0.301367 4_3:-53999382 None:intergenic
AATTTAATCTTCCTGATGAT+TGG 0.316441 4_3:+53999447 Msa0647830:CDS
ACATCTTTGTTAGCATAATA+AGG 0.320542 4_3:-54001811 None:intergenic
ATAGCAGAATCATCAGAAAA+TGG 0.332671 4_3:-54001369 None:intergenic
ATTGGAAGAAGAACATGAAT+TGG 0.337487 4_3:+53996319 Msa0647830:CDS
TACATCAAAGGAAGTGGAAA+TGG 0.338759 4_3:+53998282 Msa0647830:CDS
TCTGCAAATAATCAATTTCC+AGG 0.338927 4_3:+53999005 Msa0647830:CDS
AAAAGTGTACCTTAGATATA+TGG 0.341202 4_3:+54000871 Msa0647830:CDS
GAATAGAATAGAAGAAAGAT+TGG 0.341210 4_3:+53996301 Msa0647830:CDS
AATCATTCACTTTGTTGTAT+TGG 0.345673 4_3:-54000592 None:intergenic
GTTGTATCTACGAACGGTTT+TGG 0.346103 4_3:+53996441 Msa0647830:CDS
CGCCTGCGATTGATGTTTGA+AGG 0.347576 4_3:+53999485 Msa0647830:CDS
ACTAATGTGACACCTTTATA+AGG 0.347813 4_3:-54000791 None:intergenic
AAAGATGAGTCAAAGGATTC+AGG 0.350099 4_3:+53999323 Msa0647830:CDS
TATCAAACTCCAAAACAATT+AGG 0.352477 4_3:+53998425 Msa0647830:CDS
GTGAAACCTCACATCCAGTT+TGG 0.354521 4_3:+53996912 Msa0647830:CDS
CTCTTCTTTGTGAGCAAAAG+TGG 0.354586 4_3:+53999809 Msa0647830:CDS
GTATTGAGAGTGTGTGGATA+TGG 0.355131 4_3:+53999558 Msa0647830:CDS
TATAAAGGTGTCACATTAGT+TGG 0.356625 4_3:+54000794 Msa0647830:CDS
GTACAGACGTCCGTTTCTTC+CGG 0.362345 4_3:-54000570 None:intergenic
ACTGCATGTCCTTGTGATAA+AGG 0.365977 4_3:-53996500 None:intergenic
TTAGTGAAGTAGATGATAGA+TGG 0.370012 4_3:+53996228 Msa0647830:CDS
CTTGCAGAATTACATCTATC+AGG 0.371372 4_3:+53999134 Msa0647830:CDS
AACGGTCTTATAACTGTTCC+AGG 0.374298 4_3:-54000662 None:intergenic
ATGTTTGCAACTTTCACATT+TGG 0.376507 4_3:-54000506 None:intergenic
CTATAATGGTAGTTTATTCA+TGG 0.378222 4_3:+53999625 Msa0647830:CDS
GGAATAACAAGTTCAGTAAC+AGG 0.384570 4_3:+53999344 Msa0647830:CDS
ATACATGGAATGAATGGAAT+TGG 0.387500 4_3:+54000753 Msa0647830:CDS
GGTATAGTGGGGAACTATAA+TGG 0.392064 4_3:+53999611 Msa0647830:CDS
GAGACTTCTGTGTGGATCAT+TGG 0.402156 4_3:+53996410 Msa0647830:CDS
GATCCAATATTTATAAAGTC+TGG 0.409480 4_3:+53996974 Msa0647830:CDS
TTATTCTTCACTACTTCAGT+TGG 0.414956 4_3:+53998389 Msa0647830:CDS
TGCCAGGTATCGCAAGGAAA+AGG 0.420185 4_3:+53999768 Msa0647830:CDS
GGAGTGTGCTTCTTAGAGAA+TGG 0.422543 4_3:+53999660 Msa0647830:CDS
CATCATGGAAGAGGCACATA+TGG 0.423310 4_3:+53997945 Msa0647830:CDS
GAATCATCAGAAAATGGAAT+TGG 0.423365 4_3:-54001363 None:intergenic
GAACATGGAACACCTTATAA+AGG 0.423412 4_3:+54000779 Msa0647830:CDS
TTTATATGAGGAAATTCAAA+TGG 0.428889 4_3:+54000465 Msa0647830:CDS
TGTAAAGTGTACCCCTTAGA+TGG 0.429129 4_3:-53998001 None:intergenic
TATATAGGAAGGCACTTTAG+TGG 0.429506 4_3:+53998250 Msa0647830:intron
TGGGTTTGGTCAAGGATCAT+TGG 0.430251 4_3:+54001642 Msa0647830:three_prime_UTR
CCGTTATCAAAATCATTAAC+AGG 0.431059 4_3:+54000680 Msa0647830:CDS
TAGGGGAGAAAGAATGGGTT+TGG 0.434715 4_3:+54001628 Msa0647830:three_prime_UTR
ATCTTCGTCACCGGAAGAAA+CGG 0.436588 4_3:+54000560 Msa0647830:CDS
AGTAGTGAAGAATAAAGAAA+TGG 0.438853 4_3:-53998381 None:intergenic
CATCAACAACTAAATATGTT+TGG 0.439311 4_3:+53999213 Msa0647830:CDS
TCACCTGGTCCTAGCTTTGA+AGG 0.439520 4_3:+54000818 Msa0647830:CDS
CAACCATGGGATAGATTGCC+AGG 0.443851 4_3:+53999752 Msa0647830:CDS
TGGCAGATGCATGTGCAAAT+TGG 0.444038 4_3:+53996890 Msa0647830:intron
GTGGCCTTGTTGAGTACAAC+TGG 0.444449 4_3:+54000729 Msa0647830:CDS
GGTTATTTCTGCACAAAGAA+AGG 0.445162 4_3:+53997511 Msa0647830:CDS
AACTTGTAGGGGAGAAAGAA+TGG 0.445628 4_3:+54001622 Msa0647830:three_prime_UTR
GCATTCCATCCTTCACTAGC+TGG 0.446291 4_3:-53999251 None:intergenic
AATTGATTCCCTTCAAAGCT+AGG 0.451462 4_3:-54000827 None:intergenic
CTGGAGTTGTGACAGATGAT+AGG 0.451751 4_3:+53996993 Msa0647830:CDS
TTGGCAGAAATACAACTTGT+AGG 0.457322 4_3:+54001609 Msa0647830:three_prime_UTR
GAATTACATCTATCAGGAAT+AGG 0.457368 4_3:+53999140 Msa0647830:CDS
GTTGAACCTAGGTTTATATG+AGG 0.461770 4_3:+54000453 Msa0647830:intron
ACTGGAATACATGGAATGAA+TGG 0.462122 4_3:+54000747 Msa0647830:CDS
AAAGGAAGAAATGCTGTTGT+TGG 0.465279 4_3:+53999725 Msa0647830:CDS
AGTGAAACTACCATGTGATT+TGG 0.469008 4_3:+53996256 Msa0647830:CDS
ATGTCGTGTCTATAACCTAT+AGG 0.471511 4_3:-54001856 None:intergenic
TCTAAGGGGTACACTTTACA+TGG 0.471522 4_3:+53998004 Msa0647830:CDS
CACTATACGTGTCCGACACC+CGG 0.472076 4_3:+54001896 Msa0647830:three_prime_UTR
TTTGCAACTTTCACATTTGG+AGG 0.472090 4_3:-54000503 None:intergenic
CTACATTTGCTTCACCTGGT+TGG 0.473424 4_3:-53997683 None:intergenic
TTACTACTAATCCAATCATC+AGG 0.474961 4_3:-53999458 None:intergenic
ACAACAAAGTGAATGATTTG+TGG 0.475854 4_3:+54000597 Msa0647830:CDS
TGTGTGAATTCAATCCAAAC+TGG 0.476391 4_3:-53996926 None:intergenic
CATATGTGCCTCTTCCATGA+TGG 0.480008 4_3:-53997944 None:intergenic
AATTGTTCTGATATGAGAAA+AGG 0.481713 4_3:+53999707 Msa0647830:CDS
CCGACTTGTAATGGTAAGCC+TGG 0.482409 4_3:-53999080 None:intergenic
TAAGAGACGGTTGAACCTAT+AGG 0.484366 4_3:+54001841 Msa0647830:three_prime_UTR
AGTATCCTTCCGACTTGTAA+TGG 0.485479 4_3:-53999089 None:intergenic
TGGCAGAAATACAACTTGTA+GGG 0.486865 4_3:+54001610 Msa0647830:three_prime_UTR
TACAGCTGTGAATGGTATAG+TGG 0.486961 4_3:+53999598 Msa0647830:CDS
TATGAGGAAATTCAAATGGA+AGG 0.488326 4_3:+54000469 Msa0647830:CDS
GCTGCTACATTTGCTTCACC+TGG 0.489201 4_3:-53997687 None:intergenic
GAAGATTACATCAAAGGAAG+TGG 0.489306 4_3:+53998276 Msa0647830:CDS
ATAGAATCAAATGCTGAGAT+TGG 0.495602 4_3:-54000631 None:intergenic
AGTTTCGGATTAGACATGTC+CGG 0.501521 4_3:-54001915 None:intergenic
GAGAAGTAGTATACACCATA+AGG 0.501786 4_3:+53997733 Msa0647830:CDS
TGGAAGATTATTGCAGTTCA+CGG 0.504744 4_3:+53999829 Msa0647830:CDS
TATTTGAACTTAGAGATGGC+AGG 0.504942 4_3:+54001391 Msa0647830:three_prime_UTR
GATTTGAGCAGAAAACTGAT+AGG 0.505867 4_3:+53996195 Msa0647830:CDS
GCCAGGTATCGCAAGGAAAA+GGG 0.506419 4_3:+53999769 Msa0647830:CDS
GTCACATTAGTTGGTTCACC+TGG 0.512923 4_3:+54000803 Msa0647830:CDS
ATGCCTGTCATACAGTTTCG+CGG 0.513955 4_3:-53999299 None:intergenic
CTAGATTCATCTCTCAAAGA+TGG 0.516955 4_3:-53998350 None:intergenic
AGATTAAATTCTTCTTCTGA+AGG 0.517199 4_3:-53999434 None:intergenic
GGTGATGTATACAGTTCTAC+TGG 0.518537 4_3:+53997890 Msa0647830:intron
TAGAACAGATGGATAAATCA+TGG 0.519769 4_3:+53997660 Msa0647830:intron
GGAGTGGTAATGAGATAGCA+TGG 0.522959 4_3:+53999681 Msa0647830:CDS
AGAAAGAATGGGTTTGGTCA+AGG 0.524066 4_3:+54001634 Msa0647830:three_prime_UTR
ACTTGTAGGGGAGAAAGAAT+GGG 0.525155 4_3:+54001623 Msa0647830:three_prime_UTR
GGAAGAAATGCTGTTGTTGG+AGG 0.528790 4_3:+53999728 Msa0647830:CDS
ATACTCTTTGCACTAGATGA+TGG 0.533170 4_3:+53999107 Msa0647830:CDS
GTGTGGATCATTGGTGAAAG+TGG 0.534482 4_3:+53996419 Msa0647830:CDS
ACAGTAAATCAAAACCATCA+TGG 0.535608 4_3:+53997930 Msa0647830:CDS
GATAGTTCTACAGCTGTGAA+TGG 0.537031 4_3:+53999590 Msa0647830:CDS
TGGAAAGAAGATTACATCAA+AGG 0.538140 4_3:+53998270 Msa0647830:CDS
ACATCAAAGGAAGTGGAAAT+GGG 0.538225 4_3:+53998283 Msa0647830:CDS
TTGAGTACAACTGGAATACA+TGG 0.538673 4_3:+54000738 Msa0647830:CDS
AAAGCAGCAAGAGGCAAACC+AGG 0.539205 4_3:+53999062 Msa0647830:CDS
ACAGCTGTGAATGGTATAGT+GGG 0.543577 4_3:+53999599 Msa0647830:CDS
TCACCTTTGATACCATCTAA+GGG 0.543633 4_3:+53997989 Msa0647830:CDS
GCTATATTTGAACTTAGAGA+TGG 0.543911 4_3:+54001387 Msa0647830:three_prime_UTR
AAAGAAATTCTCTTTCTCAA+AGG 0.545065 4_3:-53996374 None:intergenic
GGAATAGGTGGTGAGAGTGC+AGG 0.548161 4_3:+53999155 Msa0647830:CDS
AATCAAAACCATCATGGAAG+AGG 0.550305 4_3:+53997936 Msa0647830:CDS
TTCCCTTCAAAGCTAGGACC+AGG 0.551345 4_3:-54000821 None:intergenic
AAGTGGAAATGGGTGGTCCA+TGG 0.557277 4_3:+53998293 Msa0647830:CDS
AGTTGATCAAGAATTATTCA+GGG 0.560071 4_3:+54000529 Msa0647830:CDS
TTGCAGAGGTTGAGCCTCCA+AGG 0.561226 4_3:+53997548 Msa0647830:CDS
GTTTCGGATTAGACATGTCC+GGG 0.564007 4_3:-54001914 None:intergenic
TTCAATCCAAACTGGATGTG+AGG 0.567335 4_3:-53996918 None:intergenic
CATCACAGGTGACATATACA+AGG 0.568201 4_3:+54001340 Msa0647830:intron
TGCCTTCAAACATCAATCGC+AGG 0.568851 4_3:-53999487 None:intergenic
ATAATCAATTTCCAGGAGAG+TGG 0.571794 4_3:+53999012 Msa0647830:CDS
TGGATAAATCATGGCCAACC+AGG 0.573431 4_3:+53997669 Msa0647830:CDS
GGACCGCGAAACTGTATGAC+AGG 0.573843 4_3:+53999296 Msa0647830:CDS
AGGCATAAAAGATGAGTCAA+AGG 0.574002 4_3:+53999316 Msa0647830:CDS
CACCTGGTCCTAGCTTTGAA+GGG 0.574722 4_3:+54000819 Msa0647830:CDS
ATTTGAACTTAGAGATGGCA+GGG 0.575756 4_3:+54001392 Msa0647830:three_prime_UTR
CATGATTTACCTTTATCACA+AGG 0.576154 4_3:+53996491 Msa0647830:CDS
CTGCACAAAGAAAGGAGCAC+TGG 0.577609 4_3:+53997519 Msa0647830:CDS
GAATGGAATTGGATAGAACA+TGG 0.583237 4_3:+54000764 Msa0647830:CDS
TACCCCTTAGATGGTATCAA+AGG 0.583542 4_3:-53997992 None:intergenic
GATTAGACATGTCCGGGTGT+CGG 0.591323 4_3:-54001908 None:intergenic
ATGCACCAGCTAGTGAAGGA+TGG 0.598528 4_3:+53999246 Msa0647830:CDS
CACCTTTGATACCATCTAAG+GGG 0.602390 4_3:+53997990 Msa0647830:CDS
GAGAATATAATCTTCGTCAC+CGG 0.605805 4_3:+54000551 Msa0647830:CDS
ATACCTGGCAATCTATCCCA+TGG 0.608069 4_3:-53999755 None:intergenic
ATGTTTGTATTGAGAGTGTG+TGG 0.611275 4_3:+53999552 Msa0647830:CDS
AAAGTGGTTGTATCTACGAA+CGG 0.613334 4_3:+53996435 Msa0647830:CDS
TTACATGCAAAAGCAGCAAG+AGG 0.625420 4_3:+53999053 Msa0647830:CDS
ACAAAATTATTGGATTACAG+TGG 0.626195 4_3:+54001686 Msa0647830:three_prime_UTR
TGTGATAAAGGTAAATCATG+AGG 0.627922 4_3:-53996488 None:intergenic
GGCAGAAATACAACTTGTAG+GGG 0.633865 4_3:+54001611 Msa0647830:three_prime_UTR
TTAGATGCACCAGCTAGTGA+AGG 0.636429 4_3:+53999242 Msa0647830:CDS
ATAGATTGCCAGGTATCGCA+AGG 0.637406 4_3:+53999762 Msa0647830:CDS
GCTTACCATTACAAGTCGGA+AGG 0.639615 4_3:+53999084 Msa0647830:CDS
AAAGAAGAGTGAATCTTCAG+TGG 0.641168 4_3:-53999795 None:intergenic
TTACATCTATCAGGAATAGG+TGG 0.642141 4_3:+53999143 Msa0647830:CDS
TTCACTTCACTATTAACACA+AGG 0.647859 4_3:-53996281 None:intergenic
CTGTTGTTGGAGGTCAACCA+TGG 0.654459 4_3:+53999738 Msa0647830:CDS
AGCACTGGTAGAGCTTGCAG+AGG 0.657701 4_3:+53997534 Msa0647830:CDS
TATTCCAGTTGTACTCAACA+AGG 0.675295 4_3:-54000733 None:intergenic
ACATGGAAGTGGAAGGACTG+TGG 0.677918 4_3:+54000902 Msa0647830:CDS
TCAAAGGAAGTGGAAATGGG+TGG 0.682979 4_3:+53998286 Msa0647830:CDS
ACACAAGGCACCAAATCACA+TGG 0.686237 4_3:-53996266 None:intergenic
CAGCTGTGAATGGTATAGTG+GGG 0.690877 4_3:+53999600 Msa0647830:CDS
GAGTATTGCACAGAAGAGCG+CGG 0.705234 4_3:+53999275 Msa0647830:CDS
GTGCTTCTTAGAGAATGGAG+TGG 0.705824 4_3:+53999665 Msa0647830:CDS
CCAGGCTTACCATTACAAGT+CGG 0.705851 4_3:+53999080 Msa0647830:CDS
TGTTGTTGGAGGTCAACCAT+GGG 0.717332 4_3:+53999739 Msa0647830:CDS
AAATGTCTGAGACTTCTGTG+TGG 0.723420 4_3:+53996402 Msa0647830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAATTAAATTTTATA+AGG + chr4_3:54001249-54001268 Msa0647830:intron 0.0%
!!! TAATTGTTATATTTTTTGTT+TGG + chr4_3:53996870-53996889 Msa0647830:intron 10.0%
!! TAGTATAAATAAATGAATTA+AGG + chr4_3:54000120-54000139 Msa0647830:intron 10.0%
!!! AAAATGTTTGATGATTATAT+AGG + chr4_3:53998235-53998254 Msa0647830:intron 15.0%
!!! TTAATTTGTTCAAACAAATA+AGG - chr4_3:53998609-53998628 None:intergenic 15.0%
!! ATTTCCATAAATATGAATAT+AGG - chr4_3:54000413-54000432 None:intergenic 15.0%
!! TATATTCATATTTATGGAAA+TGG + chr4_3:54000412-54000431 Msa0647830:intron 15.0%
!!! TATTTTTATCCATATATCTA+AGG - chr4_3:54000883-54000902 None:intergenic 15.0%
!!! ATGCTTTTAAACAAAAAATA+AGG + chr4_3:54001055-54001074 Msa0647830:intron 15.0%
!!! TGCTTTTAAACAAAAAATAA+GGG + chr4_3:54001056-54001075 Msa0647830:intron 15.0%
!! TTTGATCTTAATTAAAGTAA+TGG + chr4_3:54001292-54001311 Msa0647830:intron 15.0%
!! GAAATCAATATAAGAAAATT+TGG + chr4_3:54001509-54001528 Msa0647830:intron 15.0%
!!! TTTTGTAAACATAAACTATT+TGG - chr4_3:54001672-54001691 None:intergenic 15.0%
!! GTTTATGTTTACAAAATTAT+TGG + chr4_3:54001676-54001695 Msa0647830:three_prime_UTR 15.0%
!!! TATTATTTTGTTTTATCTGC+CGG + chr4_3:53996609-53996628 Msa0647830:intron 20.0%
!!! TTAAAATTAGTTTGAGATTC+AGG + chr4_3:53997030-53997049 Msa0647830:intron 20.0%
!!! TAAAATTAGTTTGAGATTCA+GGG + chr4_3:53997031-53997050 Msa0647830:intron 20.0%
!!! AGTTTTTTCTAAAATCATAG+TGG - chr4_3:53997121-53997140 None:intergenic 20.0%
!! TTATAACATACACATCTAAA+GGG - chr4_3:53997262-53997281 None:intergenic 20.0%
!! TTTATAACATACACATCTAA+AGG - chr4_3:53997263-53997282 None:intergenic 20.0%
!! TTTAGATGTGTATGTTATAA+AGG + chr4_3:53997262-53997281 Msa0647830:intron 20.0%
!!! ATAGACCTCATATTTTATTT+TGG - chr4_3:53997309-53997328 None:intergenic 20.0%
!!! CATCAAACATTTTAGAAAAA+TGG - chr4_3:53998228-53998247 None:intergenic 20.0%
!! CTATAATTCATAAGTTATCA+TGG + chr4_3:53998654-53998673 Msa0647830:intron 20.0%
!!! AATAAGTTGAAAACAACATA+TGG + chr4_3:53998689-53998708 Msa0647830:intron 20.0%
!! ATAAGTAATAATGATGTTCT+TGG - chr4_3:53999385-53999404 None:intergenic 20.0%
!!! TATTACTTATCTCTAGAAAA+AGG + chr4_3:53999395-53999414 Msa0647830:CDS 20.0%
!!! AGGATCTAAACAATTTTTTT+GGG - chr4_3:54000199-54000218 None:intergenic 20.0%
!!! AAGGATCTAAACAATTTTTT+TGG - chr4_3:54000200-54000219 None:intergenic 20.0%
!! AGAGACTAAAAGAATAATTT+GGG + chr4_3:54000369-54000388 Msa0647830:intron 20.0%
!! ATGACCTATATTCATATTTA+TGG + chr4_3:54000406-54000425 Msa0647830:intron 20.0%
!! TTTATATGAGGAAATTCAAA+TGG + chr4_3:54000465-54000484 Msa0647830:CDS 20.0%
!! GATATATGGATAAAAATACA+TGG + chr4_3:54000885-54000904 Msa0647830:CDS 20.0%
!!! TATTTTTATCTGCTAAAGAA+GGG - chr4_3:54000931-54000950 None:intergenic 20.0%
!!! ATATTTTTATCTGCTAAAGA+AGG - chr4_3:54000932-54000951 None:intergenic 20.0%
!! ACATTATGAAATATAGAATG+TGG - chr4_3:54001484-54001503 None:intergenic 20.0%
! GAATAGAATAGAAGAAAGAT+TGG + chr4_3:53996301-53996320 Msa0647830:CDS 25.0%
! AAAGAAATTCTCTTTCTCAA+AGG - chr4_3:53996377-53996396 None:intergenic 25.0%
!!! AAGTTATTTTGAAGAGCTTA+TGG - chr4_3:53996690-53996709 None:intergenic 25.0%
!!! TTATCTTTTGTTATCGAGAT+AGG + chr4_3:53996754-53996773 Msa0647830:intron 25.0%
! ATAACAATTAGTCAACATGA+AGG - chr4_3:53996860-53996879 None:intergenic 25.0%
! GATCCAATATTTATAAAGTC+TGG + chr4_3:53996974-53996993 Msa0647830:CDS 25.0%
! ACTCCAGACTTTATAAATAT+TGG - chr4_3:53996980-53996999 None:intergenic 25.0%
!! AAAATTAGTTTGAGATTCAG+GGG + chr4_3:53997032-53997051 Msa0647830:intron 25.0%
! CACATCCAAAATAAAATATG+AGG + chr4_3:53997301-53997320 Msa0647830:intron 25.0%
! GTAATTCAAATATATGTGTC+TGG - chr4_3:53997425-53997444 None:intergenic 25.0%
!! TCAAAACTTGAATTTTACCT+TGG - chr4_3:53997568-53997587 None:intergenic 25.0%
! TAAGAAAATATTGCTAATCC+AGG + chr4_3:53997618-53997637 Msa0647830:intron 25.0%
! TCTATATGTATGGCAAAATA+GGG - chr4_3:53997644-53997663 None:intergenic 25.0%
! TTCTATATGTATGGCAAAAT+AGG - chr4_3:53997645-53997664 None:intergenic 25.0%
!! AACAACATTCTTCATCTTTT+TGG + chr4_3:53997840-53997859 Msa0647830:intron 25.0%
!!! ATCTTTGTTTCTTTTAACCA+AGG + chr4_3:53998048-53998067 Msa0647830:CDS 25.0%
! CTAAAACCATGATATCAAAT+AGG + chr4_3:53998075-53998094 Msa0647830:intron 25.0%
! ACATTTCCTATTTGATATCA+TGG - chr4_3:53998084-53998103 None:intergenic 25.0%
! TGTAGAATTCCATATTAATG+AGG + chr4_3:53998164-53998183 Msa0647830:intron 25.0%
!! TGTTTGATGATTATATAGGA+AGG + chr4_3:53998239-53998258 Msa0647830:intron 25.0%
!!! TAGATGTCAAATTTTGATGT+GGG - chr4_3:53998325-53998344 None:intergenic 25.0%
!!! ATAGATGTCAAATTTTGATG+TGG - chr4_3:53998326-53998345 None:intergenic 25.0%
! AGTAGTGAAGAATAAAGAAA+TGG - chr4_3:53998384-53998403 None:intergenic 25.0%
! TATCAAACTCCAAAACAATT+AGG + chr4_3:53998425-53998444 Msa0647830:CDS 25.0%
!!! GTTTTCCTTCTAAAATTTTG+TGG - chr4_3:53999191-53999210 None:intergenic 25.0%
! CATCAACAACTAAATATGTT+TGG + chr4_3:53999213-53999232 Msa0647830:CDS 25.0%
! AGATTAAATTCTTCTTCTGA+AGG - chr4_3:53999437-53999456 None:intergenic 25.0%
! AATTTAATCTTCCTGATGAT+TGG + chr4_3:53999447-53999466 Msa0647830:CDS 25.0%
! CTATAATGGTAGTTTATTCA+TGG + chr4_3:53999625-53999644 Msa0647830:CDS 25.0%
!!! TTATTCATGGTTGATACTTT+TGG + chr4_3:53999638-53999657 Msa0647830:CDS 25.0%
!!! TATTCATGGTTGATACTTTT+GGG + chr4_3:53999639-53999658 Msa0647830:CDS 25.0%
! AATTGTTCTGATATGAGAAA+AGG + chr4_3:53999707-53999726 Msa0647830:CDS 25.0%
! TTATAAATCCCTCTAAATAC+AGG + chr4_3:54000153-54000172 Msa0647830:intron 25.0%
!!! TCTAAACAATTTTTTTGGGA+GGG - chr4_3:54000195-54000214 None:intergenic 25.0%
!!! ATCTAAACAATTTTTTTGGG+AGG - chr4_3:54000196-54000215 None:intergenic 25.0%
! CAGAGACTAAAAGAATAATT+TGG + chr4_3:54000368-54000387 Msa0647830:intron 25.0%
! GAGACTAAAAGAATAATTTG+GGG + chr4_3:54000370-54000389 Msa0647830:intron 25.0%
! AGACTAAAAGAATAATTTGG+GGG + chr4_3:54000371-54000390 Msa0647830:intron 25.0%
! AATGTTTAAATGTTGAACCT+AGG + chr4_3:54000442-54000461 Msa0647830:intron 25.0%
! TAGTTGATCAAGAATTATTC+AGG + chr4_3:54000528-54000547 Msa0647830:CDS 25.0%
! AGTTGATCAAGAATTATTCA+GGG + chr4_3:54000529-54000548 Msa0647830:CDS 25.0%
!! AATCATTCACTTTGTTGTAT+TGG - chr4_3:54000595-54000614 None:intergenic 25.0%
!!! CCTGTTAATGATTTTGATAA+CGG - chr4_3:54000683-54000702 None:intergenic 25.0%
!! AAAAGTGTACCTTAGATATA+TGG + chr4_3:54000871-54000890 Msa0647830:CDS 25.0%
! AATCTTTAAATGTGATCCTA+AGG + chr4_3:54000991-54001010 Msa0647830:intron 25.0%
! TAAAGACTGAAAAGTGAATA+CGG - chr4_3:54001132-54001151 None:intergenic 25.0%
!! TTTTGAATCTTATACATCAC+AGG + chr4_3:54001326-54001345 Msa0647830:intron 25.0%
!! ATGATTTTCTACCAGATAAT+TGG - chr4_3:54001449-54001468 None:intergenic 25.0%
! GTAAAGCTCTTAAAATTTCT+TGG + chr4_3:54001531-54001550 Msa0647830:intron 25.0%
! TCAAAAATTACCAAAAGCAA+TGG + chr4_3:54001562-54001581 Msa0647830:intron 25.0%
! ACAAAATTATTGGATTACAG+TGG + chr4_3:54001686-54001705 Msa0647830:three_prime_UTR 25.0%
! ACATCTTTGTTAGCATAATA+AGG - chr4_3:54001814-54001833 None:intergenic 25.0%
! AGATGTAAAAATGTAAGAGA+CGG + chr4_3:54001828-54001847 Msa0647830:three_prime_UTR 25.0%
TTAGTGAAGTAGATGATAGA+TGG + chr4_3:53996228-53996247 Msa0647830:CDS 30.0%
TTCACTTCACTATTAACACA+AGG - chr4_3:53996284-53996303 None:intergenic 30.0%
ATTGGAAGAAGAACATGAAT+TGG + chr4_3:53996319-53996338 Msa0647830:CDS 30.0%
GAAAAAGATGAGTTTGGATA+TGG + chr4_3:53996346-53996365 Msa0647830:CDS 30.0%
TGTGATAAAGGTAAATCATG+AGG - chr4_3:53996491-53996510 None:intergenic 30.0%
CATGATTTACCTTTATCACA+AGG + chr4_3:53996491-53996510 Msa0647830:CDS 30.0%
GTTAAGTACTTATTCGAAAG+TGG + chr4_3:53997205-53997224 Msa0647830:intron 30.0%
! AAACTTGAATTTTACCTTGG+AGG - chr4_3:53997565-53997584 None:intergenic 30.0%
ATCCATCTGTTCTATATGTA+TGG - chr4_3:53997654-53997673 None:intergenic 30.0%
TAGAACAGATGGATAAATCA+TGG + chr4_3:53997660-53997679 Msa0647830:intron 30.0%
ACAACTATAACTGATGAATG+TGG + chr4_3:53997869-53997888 Msa0647830:intron 30.0%
ACAGTAAATCAAAACCATCA+TGG + chr4_3:53997930-53997949 Msa0647830:CDS 30.0%
CTTAAACGACCTCATTAATA+TGG - chr4_3:53998176-53998195 None:intergenic 30.0%
TGGAAAGAAGATTACATCAA+AGG + chr4_3:53998270-53998289 Msa0647830:CDS 30.0%
!! AGATGTCAAATTTTGATGTG+GGG - chr4_3:53998324-53998343 None:intergenic 30.0%
TTATTCTTCACTACTTCAGT+TGG + chr4_3:53998389-53998408 Msa0647830:CDS 30.0%
! GTTAACTGACCTAATTGTTT+TGG - chr4_3:53998437-53998456 None:intergenic 30.0%
! TAAGTACCTTGCTCTAAATT+AGG + chr4_3:53998512-53998531 Msa0647830:intron 30.0%
! AAGTACCTTGCTCTAAATTA+GGG + chr4_3:53998513-53998532 Msa0647830:intron 30.0%
! AAATTCCCTAATTTAGAGCA+AGG - chr4_3:53998521-53998540 None:intergenic 30.0%
ATACTATTTCGAAGAGCTTA+TGG - chr4_3:53998733-53998752 None:intergenic 30.0%
TGAGTAGGAAATATCAAGTA+TGG - chr4_3:53998840-53998859 None:intergenic 30.0%
! TTTTGCATGTATGGCTTTTA+AGG - chr4_3:53998895-53998914 None:intergenic 30.0%
! AGCATTTCATTTTGCATGTA+TGG - chr4_3:53998904-53998923 None:intergenic 30.0%
TTGAATTATCACATGAACAC+AGG + chr4_3:53998978-53998997 Msa0647830:intron 30.0%
TCTGCAAATAATCAATTTCC+AGG + chr4_3:53999005-53999024 Msa0647830:CDS 30.0%
GAATTACATCTATCAGGAAT+AGG + chr4_3:53999140-53999159 Msa0647830:CDS 30.0%
! CTAAAATTTTGTGGTAGAGA+TGG - chr4_3:53999182-53999201 None:intergenic 30.0%
! CTCTACCACAAAATTTTAGA+AGG + chr4_3:53999183-53999202 Msa0647830:CDS 30.0%
! TACTTATCTCTAGAAAAAGG+TGG + chr4_3:53999398-53999417 Msa0647830:CDS 30.0%
TTACTACTAATCCAATCATC+AGG - chr4_3:53999461-53999480 None:intergenic 30.0%
ATACATGTCAGTATCTTATC+CGG - chr4_3:53999965-53999984 None:intergenic 30.0%
AGTGTTATCATCATCTGTTT+AGG - chr4_3:54000033-54000052 None:intergenic 30.0%
ACTCTAATGTGATAAGCTTT+AGG - chr4_3:54000090-54000109 None:intergenic 30.0%
! GAAACTAAAAGTGGTTGTTT+TGG - chr4_3:54000230-54000249 None:intergenic 30.0%
!!! GATGTTAGTTTTCGTTTGTT+TGG - chr4_3:54000349-54000368 None:intergenic 30.0%
GAATTTCCTCATATAAACCT+AGG - chr4_3:54000462-54000481 None:intergenic 30.0%
TATGAGGAAATTCAAATGGA+AGG + chr4_3:54000469-54000488 Msa0647830:CDS 30.0%
ATGTTTGCAACTTTCACATT+TGG - chr4_3:54000509-54000528 None:intergenic 30.0%
ACAACAAAGTGAATGATTTG+TGG + chr4_3:54000597-54000616 Msa0647830:CDS 30.0%
ATAGAATCAAATGCTGAGAT+TGG - chr4_3:54000634-54000653 None:intergenic 30.0%
! TTGATTCTATCCAATTTTCC+TGG + chr4_3:54000644-54000663 Msa0647830:CDS 30.0%
TATAACTGTTCCAGGAAAAT+TGG - chr4_3:54000657-54000676 None:intergenic 30.0%
CCGTTATCAAAATCATTAAC+AGG + chr4_3:54000680-54000699 Msa0647830:CDS 30.0%
!! ATCTTCATGTTTTCAAGAGA+TGG + chr4_3:54000707-54000726 Msa0647830:CDS 30.0%
ATACATGGAATGAATGGAAT+TGG + chr4_3:54000753-54000772 Msa0647830:CDS 30.0%
ACTAATGTGACACCTTTATA+AGG - chr4_3:54000794-54000813 None:intergenic 30.0%
!! TATAAAGGTGTCACATTAGT+TGG + chr4_3:54000794-54000813 Msa0647830:CDS 30.0%
!! GGGAATCAATTACTTTTGAT+TGG + chr4_3:54000839-54000858 Msa0647830:CDS 30.0%
!! TTACTTTTGATTGGTTCAGA+TGG + chr4_3:54000848-54000867 Msa0647830:CDS 30.0%
TGGATAAAAATACATGGAAG+TGG + chr4_3:54000891-54000910 Msa0647830:CDS 30.0%
TAAAAATACATGGAAGTGGA+AGG + chr4_3:54000895-54000914 Msa0647830:CDS 30.0%
TGTAGATCAATACTTACCTT+AGG - chr4_3:54001010-54001029 None:intergenic 30.0%
!! AAGTATTGATCTACACTTAC+TGG + chr4_3:54001015-54001034 Msa0647830:intron 30.0%
!!! AAACTGCATATTTTTAGTCC+CGG + chr4_3:54001161-54001180 Msa0647830:intron 30.0%
GAATCATCAGAAAATGGAAT+TGG - chr4_3:54001366-54001385 None:intergenic 30.0%
ATAGCAGAATCATCAGAAAA+TGG - chr4_3:54001372-54001391 None:intergenic 30.0%
GCTATATTTGAACTTAGAGA+TGG + chr4_3:54001387-54001406 Msa0647830:three_prime_UTR 30.0%
TTGGAAATAACAGTGAACTA+AGG - chr4_3:54001430-54001449 None:intergenic 30.0%
!! CACTGTTATTTCCAATTATC+TGG + chr4_3:54001435-54001454 Msa0647830:intron 30.0%
!!! CATCAAGTCATCAAGTTTTT+TGG - chr4_3:54001769-54001788 None:intergenic 30.0%
CTTTGTCGAAAAAACTGATG+TGG - chr4_3:53996167-53996186 None:intergenic 35.0%
GATTTGAGCAGAAAACTGAT+AGG + chr4_3:53996195-53996214 Msa0647830:CDS 35.0%
! AGCAGAAAACTGATAGGTTT+TGG + chr4_3:53996201-53996220 Msa0647830:CDS 35.0%
AGTGAAACTACCATGTGATT+TGG + chr4_3:53996256-53996275 Msa0647830:CDS 35.0%
GGATGAGAAAAAGATGAGTT+TGG + chr4_3:53996340-53996359 Msa0647830:CDS 35.0%
AAAGTGGTTGTATCTACGAA+CGG + chr4_3:53996435-53996454 Msa0647830:CDS 35.0%
!!! GTTTTGGAATGGACTTGAAT+GGG + chr4_3:53996457-53996476 Msa0647830:CDS 35.0%
ATTCTTGCTCTATCTGAATC+AGG + chr4_3:53996548-53996567 Msa0647830:intron 35.0%
TGAATCAGGAAATCTGTATC+AGG + chr4_3:53996562-53996581 Msa0647830:intron 35.0%
AATAAGCCTTTAAGCTGAAC+AGG + chr4_3:53996797-53996816 Msa0647830:intron 35.0%
ATAAGCCTTTAAGCTGAACA+GGG + chr4_3:53996798-53996817 Msa0647830:intron 35.0%
TTAGTCAACATGAAGGACAA+AGG - chr4_3:53996853-53996872 None:intergenic 35.0%
TGTGTGAATTCAATCCAAAC+TGG - chr4_3:53996929-53996948 None:intergenic 35.0%
TACACGACTTAGTGTATGTT+TGG + chr4_3:53997063-53997082 Msa0647830:intron 35.0%
GACTTAGTGTATGTTTGGAT+TGG + chr4_3:53997068-53997087 Msa0647830:intron 35.0%
ACTAAGTGCATGTAGAACAA+TGG - chr4_3:53997187-53997206 None:intergenic 35.0%
ATGTGTCTGGATGAACTTAT+AGG - chr4_3:53997412-53997431 None:intergenic 35.0%
ACAAATCAACAGCACAAACT+AGG - chr4_3:53997481-53997500 None:intergenic 35.0%
!! TGTGCTGTTGATTTGTAAAC+AGG + chr4_3:53997485-53997504 Msa0647830:intron 35.0%
!! TGTTGATTTGTAAACAGGAG+AGG + chr4_3:53997490-53997509 Msa0647830:intron 35.0%
!! GGTTATTTCTGCACAAAGAA+AGG + chr4_3:53997511-53997530 Msa0647830:CDS 35.0%
TGCCATACATATAGAACAGA+TGG + chr4_3:53997649-53997668 Msa0647830:intron 35.0%
GAGAAGTAGTATACACCATA+AGG + chr4_3:53997733-53997752 Msa0647830:CDS 35.0%
AATCAAAACCATCATGGAAG+AGG + chr4_3:53997936-53997955 Msa0647830:CDS 35.0%
GCACATATGGCAAGAAAAAA+AGG + chr4_3:53997958-53997977 Msa0647830:CDS 35.0%
TTCACCTTTGATACCATCTA+AGG + chr4_3:53997988-53998007 Msa0647830:CDS 35.0%
TCACCTTTGATACCATCTAA+GGG + chr4_3:53997989-53998008 Msa0647830:CDS 35.0%
!!! ATCATGGTTTTAGTGTACCT+TGG - chr4_3:53998068-53998087 None:intergenic 35.0%
TGTCTTGAGCATGTTTAACT+TGG + chr4_3:53998136-53998155 Msa0647830:intron 35.0%
!! TATATAGGAAGGCACTTTAG+TGG + chr4_3:53998250-53998269 Msa0647830:intron 35.0%
GAAGATTACATCAAAGGAAG+TGG + chr4_3:53998276-53998295 Msa0647830:CDS 35.0%
TACATCAAAGGAAGTGGAAA+TGG + chr4_3:53998282-53998301 Msa0647830:CDS 35.0%
ACATCAAAGGAAGTGGAAAT+GGG + chr4_3:53998283-53998302 Msa0647830:CDS 35.0%
!! GATGTCAAATTTTGATGTGG+GGG - chr4_3:53998323-53998342 None:intergenic 35.0%
CTAGATTCATCTCTCAAAGA+TGG - chr4_3:53998353-53998372 None:intergenic 35.0%
CTAGATGTATGTGTCTGTAA+TGG - chr4_3:53998484-53998503 None:intergenic 35.0%
AGACTCTTCATTAGACACTA+TGG + chr4_3:53998583-53998602 Msa0647830:intron 35.0%
AAGTTATCATGGAGAGCTTA+AGG + chr4_3:53998665-53998684 Msa0647830:intron 35.0%
AAATAGTATCACAGGTGTGT+AGG + chr4_3:53998744-53998763 Msa0647830:intron 35.0%
TTCAAATAAGCCAATCCAAG+CGG + chr4_3:53998779-53998798 Msa0647830:intron 35.0%
ATATAGATATAGAGTCCGCT+TGG - chr4_3:53998797-53998816 None:intergenic 35.0%
ATAATCAATTTCCAGGAGAG+TGG + chr4_3:53999012-53999031 Msa0647830:CDS 35.0%
ATACTCTTTGCACTAGATGA+TGG + chr4_3:53999107-53999126 Msa0647830:CDS 35.0%
CTTGCAGAATTACATCTATC+AGG + chr4_3:53999134-53999153 Msa0647830:CDS 35.0%
TTACATCTATCAGGAATAGG+TGG + chr4_3:53999143-53999162 Msa0647830:CDS 35.0%
AGGCATAAAAGATGAGTCAA+AGG + chr4_3:53999316-53999335 Msa0647830:CDS 35.0%
AAAGATGAGTCAAAGGATTC+AGG + chr4_3:53999323-53999342 Msa0647830:CDS 35.0%
GGAATAACAAGTTCAGTAAC+AGG + chr4_3:53999344-53999363 Msa0647830:CDS 35.0%
!!! TGAAGGCAAGTCATTTTTCT+TGG + chr4_3:53999502-53999521 Msa0647830:CDS 35.0%
!! TTTTTCTTGGTGACAAGTGA+TGG + chr4_3:53999515-53999534 Msa0647830:CDS 35.0%
! ATGTTTGTATTGAGAGTGTG+TGG + chr4_3:53999552-53999571 Msa0647830:CDS 35.0%
AAAGGAAGAAATGCTGTTGT+TGG + chr4_3:53999725-53999744 Msa0647830:CDS 35.0%
AAAGAAGAGTGAATCTTCAG+TGG - chr4_3:53999798-53999817 None:intergenic 35.0%
TGGAAGATTATTGCAGTTCA+CGG + chr4_3:53999829-53999848 Msa0647830:CDS 35.0%
CATTGCAAGTATTTGTCATC+TGG - chr4_3:53999869-53999888 None:intergenic 35.0%
AGATACTGACATGTATACAC+CGG + chr4_3:53999969-53999988 Msa0647830:intron 35.0%
TCTGCAATTTGTAGTTGACT+TGG + chr4_3:54000060-54000079 Msa0647830:intron 35.0%
!!! TGGTTGTTTTGGAAATGTGA+AGG - chr4_3:54000219-54000238 None:intergenic 35.0%
ATGATGGCAGAAACTAAAAG+TGG - chr4_3:54000239-54000258 None:intergenic 35.0%
ATCCAACAAACGAAGAATGA+TGG - chr4_3:54000255-54000274 None:intergenic 35.0%
GTTGAACCTAGGTTTATATG+AGG + chr4_3:54000453-54000472 Msa0647830:intron 35.0%
TTTGCAACTTTCACATTTGG+AGG - chr4_3:54000506-54000525 None:intergenic 35.0%
GAGAATATAATCTTCGTCAC+CGG + chr4_3:54000551-54000570 Msa0647830:CDS 35.0%
!! TTCATGTTTTCAAGAGATGG+TGG + chr4_3:54000710-54000729 Msa0647830:CDS 35.0%
TATTCCAGTTGTACTCAACA+AGG - chr4_3:54000736-54000755 None:intergenic 35.0%
TTGAGTACAACTGGAATACA+TGG + chr4_3:54000738-54000757 Msa0647830:CDS 35.0%
ACTGGAATACATGGAATGAA+TGG + chr4_3:54000747-54000766 Msa0647830:CDS 35.0%
GAATGGAATTGGATAGAACA+TGG + chr4_3:54000764-54000783 Msa0647830:CDS 35.0%
GAACATGGAACACCTTATAA+AGG + chr4_3:54000779-54000798 Msa0647830:CDS 35.0%
! AATTGATTCCCTTCAAAGCT+AGG - chr4_3:54000830-54000849 None:intergenic 35.0%
!!! CATATTTTTAGTCCCGGTTA+GGG + chr4_3:54001167-54001186 Msa0647830:intron 35.0%
TATTTGAACTTAGAGATGGC+AGG + chr4_3:54001391-54001410 Msa0647830:three_prime_UTR 35.0%
ATTTGAACTTAGAGATGGCA+GGG + chr4_3:54001392-54001411 Msa0647830:three_prime_UTR 35.0%
ACATCATTACTTGTGACAGT+TGG + chr4_3:54001590-54001609 Msa0647830:intron 35.0%
TTGGCAGAAATACAACTTGT+AGG + chr4_3:54001609-54001628 Msa0647830:three_prime_UTR 35.0%
TGGCAGAAATACAACTTGTA+GGG + chr4_3:54001610-54001629 Msa0647830:three_prime_UTR 35.0%
!!! AAGTCATCAAGTTTTTTGGC+TGG - chr4_3:54001765-54001784 None:intergenic 35.0%
ATGTCGTGTCTATAACCTAT+AGG - chr4_3:54001859-54001878 None:intergenic 35.0%
! AAATGTCTGAGACTTCTGTG+TGG + chr4_3:53996402-53996421 Msa0647830:CDS 40.0%
! GTTGTATCTACGAACGGTTT+TGG + chr4_3:53996441-53996460 Msa0647830:CDS 40.0%
!!! ATCTACGAACGGTTTTGGAA+TGG + chr4_3:53996446-53996465 Msa0647830:CDS 40.0%
!!! GGTTTTGGAATGGACTTGAA+TGG + chr4_3:53996456-53996475 Msa0647830:CDS 40.0%
ACTGCATGTCCTTGTGATAA+AGG - chr4_3:53996503-53996522 None:intergenic 40.0%
CGTCTCACAAGTGTTAATTC+CGG - chr4_3:53996631-53996650 None:intergenic 40.0%
CGGAATTAACACTTGTGAGA+CGG + chr4_3:53996629-53996648 Msa0647830:intron 40.0%
TAGATCCCTGTTCAGCTTAA+AGG - chr4_3:53996806-53996825 None:intergenic 40.0%
TTCAATCCAAACTGGATGTG+AGG - chr4_3:53996921-53996940 None:intergenic 40.0%
!!! TTTGAGATTCAGGGGTGTTT+TGG + chr4_3:53997040-53997059 Msa0647830:intron 40.0%
AGGCATCAAGAGAGATCAAT+AGG - chr4_3:53997461-53997480 None:intergenic 40.0%
GTGCACATACACAAACCTTA+TGG - chr4_3:53997751-53997770 None:intergenic 40.0%
GGTGATGTATACAGTTCTAC+TGG + chr4_3:53997890-53997909 Msa0647830:intron 40.0%
CACCTTTGATACCATCTAAG+GGG + chr4_3:53997990-53998009 Msa0647830:CDS 40.0%
TACCCCTTAGATGGTATCAA+AGG - chr4_3:53997995-53998014 None:intergenic 40.0%
TGTAAAGTGTACCCCTTAGA+TGG - chr4_3:53998004-53998023 None:intergenic 40.0%
! TCTAAGGGGTACACTTTACA+TGG + chr4_3:53998004-53998023 Msa0647830:CDS 40.0%
GCTCTTCGAAATAGTATCAC+AGG + chr4_3:53998736-53998755 Msa0647830:intron 40.0%
AAGACAAGCTGTTCTTGAGT+AGG - chr4_3:53998855-53998874 None:intergenic 40.0%
!!! TTGCTGCTTTTGCATGTAAG+GGG - chr4_3:53999052-53999071 None:intergenic 40.0%
!!! CTTGCTGCTTTTGCATGTAA+GGG - chr4_3:53999053-53999072 None:intergenic 40.0%
!!! TCTTGCTGCTTTTGCATGTA+AGG - chr4_3:53999054-53999073 None:intergenic 40.0%
TTACATGCAAAAGCAGCAAG+AGG + chr4_3:53999053-53999072 Msa0647830:CDS 40.0%
! AGTATCCTTCCGACTTGTAA+TGG - chr4_3:53999092-53999111 None:intergenic 40.0%
ACTAGCTGGTGCATCTAATA+TGG - chr4_3:53999240-53999259 None:intergenic 40.0%
! GTATTGAGAGTGTGTGGATA+TGG + chr4_3:53999558-53999577 Msa0647830:CDS 40.0%
! GATAGTTCTACAGCTGTGAA+TGG + chr4_3:53999590-53999609 Msa0647830:CDS 40.0%
TACAGCTGTGAATGGTATAG+TGG + chr4_3:53999598-53999617 Msa0647830:CDS 40.0%
ACAGCTGTGAATGGTATAGT+GGG + chr4_3:53999599-53999618 Msa0647830:CDS 40.0%
! GGTATAGTGGGGAACTATAA+TGG + chr4_3:53999611-53999630 Msa0647830:CDS 40.0%
CTCTTCTTTGTGAGCAAAAG+TGG + chr4_3:53999809-53999828 Msa0647830:CDS 40.0%
AGATTATTGCAGTTCACGGT+AGG + chr4_3:53999833-53999852 Msa0647830:intron 40.0%
! CACAATTTTTGTGTCGTGTC+CGG - chr4_3:53999991-54000010 None:intergenic 40.0%
!! TTTTTGGGAGGGACTAAAAC+TGG - chr4_3:54000184-54000203 None:intergenic 40.0%
TGCCATCATTCTTCGTTTGT+TGG + chr4_3:54000250-54000269 Msa0647830:intron 40.0%
! AACGGTCTTATAACTGTTCC+AGG - chr4_3:54000665-54000684 None:intergenic 40.0%
!!! GCATATTTTTAGTCCCGGTT+AGG + chr4_3:54001166-54001185 Msa0647830:intron 40.0%
CATCACAGGTGACATATACA+AGG + chr4_3:54001340-54001359 Msa0647830:intron 40.0%
! GATGTTAGCTCCATTGCTTT+TGG - chr4_3:54001575-54001594 None:intergenic 40.0%
GGCAGAAATACAACTTGTAG+GGG + chr4_3:54001611-54001630 Msa0647830:three_prime_UTR 40.0%
AACTTGTAGGGGAGAAAGAA+TGG + chr4_3:54001622-54001641 Msa0647830:three_prime_UTR 40.0%
ACTTGTAGGGGAGAAAGAAT+GGG + chr4_3:54001623-54001642 Msa0647830:three_prime_UTR 40.0%
! AGAAAGAATGGGTTTGGTCA+AGG + chr4_3:54001634-54001653 Msa0647830:three_prime_UTR 40.0%
! TTGGCTGGTCATTCTCTTAT+AGG - chr4_3:54001750-54001769 None:intergenic 40.0%
TAAGAGACGGTTGAACCTAT+AGG + chr4_3:54001841-54001860 Msa0647830:three_prime_UTR 40.0%
! ACACAAGGCACCAAATCACA+TGG - chr4_3:53996269-53996288 None:intergenic 45.0%
GAGACTTCTGTGTGGATCAT+TGG + chr4_3:53996410-53996429 Msa0647830:CDS 45.0%
GTGTGGATCATTGGTGAAAG+TGG + chr4_3:53996419-53996438 Msa0647830:CDS 45.0%
AACAGGGATCTACAAGTGGT+TGG + chr4_3:53996814-53996833 Msa0647830:intron 45.0%
!! GAAGGACAAAGGTACTTCTG+TGG - chr4_3:53996842-53996861 None:intergenic 45.0%
TGGCAGATGCATGTGCAAAT+TGG + chr4_3:53996890-53996909 Msa0647830:intron 45.0%
GTGAAACCTCACATCCAGTT+TGG + chr4_3:53996912-53996931 Msa0647830:CDS 45.0%
CTGGAGTTGTGACAGATGAT+AGG + chr4_3:53996993-53997012 Msa0647830:CDS 45.0%
ATGTATGGCAAAATAGGGCC+TGG - chr4_3:53997639-53997658 None:intergenic 45.0%
TGGATAAATCATGGCCAACC+AGG + chr4_3:53997669-53997688 Msa0647830:CDS 45.0%
CTACATTTGCTTCACCTGGT+TGG - chr4_3:53997686-53997705 None:intergenic 45.0%
CATATGTGCCTCTTCCATGA+TGG - chr4_3:53997947-53997966 None:intergenic 45.0%
! CATCATGGAAGAGGCACATA+TGG + chr4_3:53997945-53997964 Msa0647830:CDS 45.0%
TCAAAGGAAGTGGAAATGGG+TGG + chr4_3:53998286-53998305 Msa0647830:CDS 45.0%
TTTGATGTGGGGGATTTCCA+TGG - chr4_3:53998313-53998332 None:intergenic 45.0%
GATATAGAGTCCGCTTGGAT+TGG - chr4_3:53998792-53998811 None:intergenic 45.0%
! TGATGACTTTTCCACTCTCC+TGG - chr4_3:53999026-53999045 None:intergenic 45.0%
CCAGGCTTACCATTACAAGT+CGG + chr4_3:53999080-53999099 Msa0647830:CDS 45.0%
GCTTACCATTACAAGTCGGA+AGG + chr4_3:53999084-53999103 Msa0647830:CDS 45.0%
TTAGATGCACCAGCTAGTGA+AGG + chr4_3:53999242-53999261 Msa0647830:CDS 45.0%
ATGCCTGTCATACAGTTTCG+CGG - chr4_3:53999302-53999321 None:intergenic 45.0%
TGCCTTCAAACATCAATCGC+AGG - chr4_3:53999490-53999509 None:intergenic 45.0%
CAGCTGTGAATGGTATAGTG+GGG + chr4_3:53999600-53999619 Msa0647830:CDS 45.0%
GGAGTGTGCTTCTTAGAGAA+TGG + chr4_3:53999660-53999679 Msa0647830:CDS 45.0%
GTGCTTCTTAGAGAATGGAG+TGG + chr4_3:53999665-53999684 Msa0647830:CDS 45.0%
! GGAGTGGTAATGAGATAGCA+TGG + chr4_3:53999681-53999700 Msa0647830:CDS 45.0%
GGAAGAAATGCTGTTGTTGG+AGG + chr4_3:53999728-53999747 Msa0647830:CDS 45.0%
TGTTGTTGGAGGTCAACCAT+GGG + chr4_3:53999739-53999758 Msa0647830:CDS 45.0%
ATACCTGGCAATCTATCCCA+TGG - chr4_3:53999758-53999777 None:intergenic 45.0%
! ATAGATTGCCAGGTATCGCA+AGG + chr4_3:53999762-53999781 Msa0647830:CDS 45.0%
TGTCTGTGTCAGTGCTTCAT+AGG - chr4_3:53999936-53999955 None:intergenic 45.0%
!! ATGAAGCACTGACACAGACA+TGG + chr4_3:53999936-53999955 Msa0647830:intron 45.0%
TGGAAGGGCCTGTATTTAGA+GGG - chr4_3:54000164-54000183 None:intergenic 45.0%
CTAACAGAAATGCACGTCAC+AGG - chr4_3:54000315-54000334 None:intergenic 45.0%
CTGTGACGTGCATTTCTGTT+AGG + chr4_3:54000313-54000332 Msa0647830:intron 45.0%
ATCTTCGTCACCGGAAGAAA+CGG + chr4_3:54000560-54000579 Msa0647830:CDS 45.0%
! GTCACATTAGTTGGTTCACC+TGG + chr4_3:54000803-54000822 Msa0647830:CDS 45.0%
! TAGGGGAGAAAGAATGGGTT+TGG + chr4_3:54001628-54001647 Msa0647830:three_prime_UTR 45.0%
! TGGGTTTGGTCAAGGATCAT+TGG + chr4_3:54001642-54001661 Msa0647830:three_prime_UTR 45.0%
GCTGAACAGGGATCTACAAG+TGG + chr4_3:53996810-53996829 Msa0647830:intron 50.0%
! CTGCACAAAGAAAGGAGCAC+TGG + chr4_3:53997519-53997538 Msa0647830:CDS 50.0%
GCTGCTACATTTGCTTCACC+TGG - chr4_3:53997690-53997709 None:intergenic 50.0%
AAGTGGAAATGGGTGGTCCA+TGG + chr4_3:53998293-53998312 Msa0647830:CDS 50.0%
AAAGCAGCAAGAGGCAAACC+AGG + chr4_3:53999062-53999081 Msa0647830:CDS 50.0%
! CCGACTTGTAATGGTAAGCC+TGG - chr4_3:53999083-53999102 None:intergenic 50.0%
ATGCACCAGCTAGTGAAGGA+TGG + chr4_3:53999246-53999265 Msa0647830:CDS 50.0%
GCATTCCATCCTTCACTAGC+TGG - chr4_3:53999254-53999273 None:intergenic 50.0%
! GAGTATTGCACAGAAGAGCG+CGG + chr4_3:53999275-53999294 Msa0647830:CDS 50.0%
CGCCTGCGATTGATGTTTGA+AGG + chr4_3:53999485-53999504 Msa0647830:CDS 50.0%
CTGTTGTTGGAGGTCAACCA+TGG + chr4_3:53999738-53999757 Msa0647830:CDS 50.0%
CAACCATGGGATAGATTGCC+AGG + chr4_3:53999752-53999771 Msa0647830:CDS 50.0%
! TGCCAGGTATCGCAAGGAAA+AGG + chr4_3:53999768-53999787 Msa0647830:CDS 50.0%
! GCCAGGTATCGCAAGGAAAA+GGG + chr4_3:53999769-53999788 Msa0647830:CDS 50.0%
! ACCCTTTTCCTTGCGATACC+TGG - chr4_3:53999773-53999792 None:intergenic 50.0%
ACTGACACAGACATGGACAC+CGG + chr4_3:53999943-53999962 Msa0647830:intron 50.0%
CTGGAAGGGCCTGTATTTAG+AGG - chr4_3:54000165-54000184 None:intergenic 50.0%
GGGAGGGACTAAAACTGGAA+GGG - chr4_3:54000179-54000198 None:intergenic 50.0%
TGGGAGGGACTAAAACTGGA+AGG - chr4_3:54000180-54000199 None:intergenic 50.0%
GTACAGACGTCCGTTTCTTC+CGG - chr4_3:54000573-54000592 None:intergenic 50.0%
!! GTGGCCTTGTTGAGTACAAC+TGG + chr4_3:54000729-54000748 Msa0647830:CDS 50.0%
!! TCACCTGGTCCTAGCTTTGA+AGG + chr4_3:54000818-54000837 Msa0647830:CDS 50.0%
!! CACCTGGTCCTAGCTTTGAA+GGG + chr4_3:54000819-54000838 Msa0647830:CDS 50.0%
TTCCCTTCAAAGCTAGGACC+AGG - chr4_3:54000824-54000843 None:intergenic 50.0%
ACATGGAAGTGGAAGGACTG+TGG + chr4_3:54000902-54000921 Msa0647830:CDS 50.0%
TACACGCTTCAGTCCCTAAC+CGG - chr4_3:54001183-54001202 None:intergenic 50.0%
GATTAGACATGTCCGGGTGT+CGG - chr4_3:54001911-54001930 None:intergenic 50.0%
!! AGCACTGGTAGAGCTTGCAG+AGG + chr4_3:53997534-53997553 Msa0647830:CDS 55.0%
TTGCAGAGGTTGAGCCTCCA+AGG + chr4_3:53997548-53997567 Msa0647830:CDS 55.0%
! GGAATAGGTGGTGAGAGTGC+AGG + chr4_3:53999155-53999174 Msa0647830:CDS 55.0%
GGACCGCGAAACTGTATGAC+AGG + chr4_3:53999296-53999315 Msa0647830:CDS 55.0%
GAAATGCACGTCACAGGACG+TGG - chr4_3:54000309-54000328 None:intergenic 55.0%
ACACGCTTCAGTCCCTAACC+GGG - chr4_3:54001182-54001201 None:intergenic 55.0%
CACTATACGTGTCCGACACC+CGG + chr4_3:54001896-54001915 Msa0647830:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53996125 54001932 53996125 ID=Msa0647830;Name=Msa0647830
chr4_3 mRNA 53996125 54001932 53996125 ID=Msa0647830-mRNA-1;Parent=Msa0647830;Name=Msa0647830-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0.66|0.7|1|1|1|10|358|816
chr4_3 exon 53996125 53996526 53996125 ID=Msa0647830-mRNA-1:exon:13585;Parent=Msa0647830-mRNA-1
chr4_3 exon 53996896 53997017 53996896 ID=Msa0647830-mRNA-1:exon:13586;Parent=Msa0647830-mRNA-1
chr4_3 exon 53997507 53997569 53997507 ID=Msa0647830-mRNA-1:exon:13587;Parent=Msa0647830-mRNA-1
chr4_3 exon 53997668 53997754 53997668 ID=Msa0647830-mRNA-1:exon:13588;Parent=Msa0647830-mRNA-1
chr4_3 exon 53997904 53998069 53997904 ID=Msa0647830-mRNA-1:exon:13589;Parent=Msa0647830-mRNA-1
chr4_3 exon 53998257 53998446 53998257 ID=Msa0647830-mRNA-1:exon:13590;Parent=Msa0647830-mRNA-1
chr4_3 exon 53999000 53999850 53999000 ID=Msa0647830-mRNA-1:exon:13591;Parent=Msa0647830-mRNA-1
chr4_3 exon 54000464 54001001 54000464 ID=Msa0647830-mRNA-1:exon:13592;Parent=Msa0647830-mRNA-1
chr4_3 exon 54001348 54001413 54001348 ID=Msa0647830-mRNA-1:exon:13593;Parent=Msa0647830-mRNA-1
chr4_3 exon 54001609 54001932 54001609 ID=Msa0647830-mRNA-1:exon:13594;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53996125 53996526 53996125 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53996896 53997017 53996896 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53997507 53997569 53997507 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53997668 53997754 53997668 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53997904 53998069 53997904 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53998257 53998446 53998257 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 53999000 53999850 53999000 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 54000464 54001001 54000464 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 CDS 54001348 54001379 54001348 ID=Msa0647830-mRNA-1:cds;Parent=Msa0647830-mRNA-1
chr4_3 three_prime_UTR 54001380 54001413 54001380 ID=Msa0647830-mRNA-1:three_prime_utr;Parent=Msa0647830-mRNA-1
chr4_3 three_prime_UTR 54001609 54001932 54001609 ID=Msa0647830-mRNA-1:three_prime_utr;Parent=Msa0647830-mRNA-1
Gene Sequence

>Msa0647830

ATGAGATTTTGTATAGTTGAGGTTTCTGCTTCATGCTGTCCACATCAGTTTTTTCGACAAAGCAATCGACGATTTGAGCAGAAAACTGATAGGTTTTGGAAGTTTAGTGAAGTAGATGATAGATGGATTGAAGTGAAACTACCATGTGATTTGGTGCCTTGTGTTAATAGTGAAGTGAATAGAATAGAAGAAAGATTGGAAGAAGAACATGAATTGGATGAGAAAAAGATGAGTTTGGATATGGTTTTGCCTTTGAGAAAGAGAATTTCTTTGACAAAAATGTCTGAGACTTCTGTGTGGATCATTGGTGAAAGTGGTTGTATCTACGAACGGTTTTGGAATGGACTTGAATGGGTGATTGCTCCTCATGATTTACCTTTATCACAAGGACATGCAGTTGCAATGCATGTGCAAATTGGTGAAACCTCACATCCAGTTTGGATTGAATTCACACATACACTCAATCAAATCACAGATTCTGATCCAATATTTATAAAGTCTGGAGTTGTGACAGATGATAGGAAGAGAGGTTATTTCTGCACAAAGAAAGGAGCACTGGTAGAGCTTGCAGAGGTTGAGCCTCCAAGATGGATAAATCATGGCCAACCAGGTGAAGCAAATGTAGCAGCAATAGCTGATGTTGCTTCTACACGAGAAGTAGTATACACCATAAGTTCTACTGGAGATCTTTATGAATATAACAGTAAATCAAAACCATCATGGAAGAGGCACATATGGCAAGAAAAAAAGGCACAAGTTTCACCTTTGATACCATCTAAGGGGTACACTTTACATGGATTAAGTGCTGATCATTCTGAATCTTTGTTTCTTTTAACCAAGGAAGGCACTTTAGTGGAAAGAAGATTACATCAAAGGAAGTGGAAATGGGTGGTCCATGGAAATCCCCCACATCAAAATTTGACATCTATTACACCATCTTTGAGAGATGAATCTAGTGAAACTTCCATTTCTTTATTCTTCACTACTTCAGTTGGATCTGTTTTTGAGTATCAAACTCCAAAACAATTAGGCACTTCTGCAAATAATCAATTTCCAGGAGAGTGGAAAAGTCATCAGCACCCCTTACATGCAAAAGCAGCAAGAGGCAAACCAGGCTTACCATTACAAGTCGGAAGGATACTCTTTGCACTAGATGATGGTAGACTTGCAGAATTACATCTATCAGGAATAGGTGGTGAGAGTGCAGGACCATCTCTACCACAAAATTTTAGAAGGAAAACATCATCAACAACTAAATATGTTTGGTCCATATTAGATGCACCAGCTAGTGAAGGATGGAATGCAGAGTATTGCACAGAAGAGCGCGGACCGCGAAACTGTATGACAGGCATAAAAGATGAGTCAAAGGATTCAGGAATAACAAGTTCAGTAACAGGTAGAAGAAAACAAAGCCAAGAACATCATTATTACTTATCTCTAGAAAAAGGTGGTGAACTGATTATTCCTTCAGAAGAAGAATTTAATCTTCCTGATGATTGGATTAGTAGTAATTTTCGCCTGCGATTGATGTTTGAAGGCAAGTCATTTTTCTTGGTGACAAGTGATGGTTTGATTTTTGAACATGTTTGTATTGAGAGTGTGTGGATATGGCTGAAACATGATAGTTCTACAGCTGTGAATGGTATAGTGGGGAACTATAATGGTAGTTTATTCATGGTTGATACTTTTGGGAGTGTGCTTCTTAGAGAATGGAGTGGTAATGAGATAGCATGGAAGAATTGTTCTGATATGAGAAAAGGAAGAAATGCTGTTGTTGGAGGTCAACCATGGGATAGATTGCCAGGTATCGCAAGGAAAAGGGTTACCACTGAAGATTCACTCTTCTTTGTGAGCAAAAGTGGAAGATTATTGCAGTTCACGGTTTATATGAGGAAATTCAAATGGAAGGATTGCAAAAATCCTCCAAATGTGAAAGTTGCAAACATAGTTGATCAAGAATTATTCAGGGAGAATATAATCTTCGTCACCGGAAGAAACGGACGTCTGTACCAATACAACAAAGTGAATGATTTGTGGCATGAACATTACCAATCTCAGCATTTGATTCTATCCAATTTTCCTGGAACAGTTATAAGACCGTTATCAAAATCATTAACAGGCTCAATCTTCATGTTTTCAAGAGATGGTGGCCTTGTTGAGTACAACTGGAATACATGGAATGAATGGAATTGGATAGAACATGGAACACCTTATAAAGGTGTCACATTAGTTGGTTCACCTGGTCCTAGCTTTGAAGGGAATCAATTACTTTTGATTGGTTCAGATGGAAAAGTGTACCTTAGATATATGGATAAAAATACATGGAAGTGGAAGGACTGTGGTTTCCCTTCTTTAGCAGATAAAAATATTGATGCAGATAGAGAAGAATTCAATGATGAAGATGACTTAATCTTTAAATGTGACATATACAAGGCCAATTCCATTTTCTGA

Protein sequence

>Msa0647830

MRFCIVEVSASCCPHQFFRQSNRRFEQKTDRFWKFSEVDDRWIEVKLPCDLVPCVNSEVNRIEERLEEEHELDEKKMSLDMVLPLRKRISLTKMSETSVWIIGESGCIYERFWNGLEWVIAPHDLPLSQGHAVAMHVQIGETSHPVWIEFTHTLNQITDSDPIFIKSGVVTDDRKRGYFCTKKGALVELAEVEPPRWINHGQPGEANVAAIADVASTREVVYTISSTGDLYEYNSKSKPSWKRHIWQEKKAQVSPLIPSKGYTLHGLSADHSESLFLLTKEGTLVERRLHQRKWKWVVHGNPPHQNLTSITPSLRDESSETSISLFFTTSVGSVFEYQTPKQLGTSANNQFPGEWKSHQHPLHAKAARGKPGLPLQVGRILFALDDGRLAELHLSGIGGESAGPSLPQNFRRKTSSTTKYVWSILDAPASEGWNAEYCTEERGPRNCMTGIKDESKDSGITSSVTGRRKQSQEHHYYLSLEKGGELIIPSEEEFNLPDDWISSNFRLRLMFEGKSFFLVTSDGLIFEHVCIESVWIWLKHDSSTAVNGIVGNYNGSLFMVDTFGSVLLREWSGNEIAWKNCSDMRKGRNAVVGGQPWDRLPGIARKRVTTEDSLFFVSKSGRLLQFTVYMRKFKWKDCKNPPNVKVANIVDQELFRENIIFVTGRNGRLYQYNKVNDLWHEHYQSQHLILSNFPGTVIRPLSKSLTGSIFMFSRDGGLVEYNWNTWNEWNWIEHGTPYKGVTLVGSPGPSFEGNQLLLIGSDGKVYLRYMDKNTWKWKDCGFPSLADKNIDADREEFNDEDDLIFKCDIYKANSIF*