AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553460 MtrunA17_Chr4g0039181 92.762 829 35 4 1 808 16 840 0.0 1556
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 168 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTTACAAAATTAT+TGG 0.135381 4_1:+50654129 Msa0553460:three_prime_UTR
TTGGCTGGTCATTCTCTTAT+AGG 0.219569 4_1:-50654200 None:intergenic
TATAACTGTTCCAGGAAAAT+TGG 0.221427 4_1:-50653137 None:intergenic
ACTCCAGACTTTATAAATAT+TGG 0.228725 4_1:-50649455 None:intergenic
TTATTCATGGTTGATACTTT+TGG 0.263688 4_1:+50652121 Msa0553460:CDS
AGCAGAAAACTGATAGGTTT+TGG 0.269735 4_1:+50648675 Msa0553460:CDS
TAGTTGATCAAGAATTATTC+AGG 0.271460 4_1:+50653011 Msa0553460:CDS
TTCACCTTTGATACCATCTA+AGG 0.275783 4_1:+50650467 Msa0553460:CDS
ACTAGCTGGTGCATCTAATA+TGG 0.276006 4_1:-50651720 None:intergenic
GTTAACTGACCTAATTGTTT+TGG 0.276257 4_1:-50650913 None:intergenic
TATTACTTATCTCTAGAAAA+AGG 0.291210 4_1:+50651878 Msa0553460:CDS
ATAAGTAATAATGATGTTCT+TGG 0.301367 4_1:-50651865 None:intergenic
AATTTAATCTTCCTGATGAT+TGG 0.316441 4_1:+50651930 Msa0553460:CDS
GTTGTATCTATGAGAGGTTT+TGG 0.318923 4_1:+50648915 Msa0553460:CDS
ACATCTTTGTTAGCATAATA+AGG 0.320542 4_1:-50654264 None:intergenic
ATAGCAGAATCATCAGAAAA+TGG 0.332671 4_1:-50653846 None:intergenic
AATCATTCACTTTGTTGTAT+TGG 0.337243 4_1:-50653075 None:intergenic
ATTGGAAGAAGAACATGAAT+TGG 0.337487 4_1:+50648793 Msa0553460:CDS
TACATCAAAGGAAGTGGAAA+TGG 0.338759 4_1:+50650761 Msa0553460:CDS
TCTGCAAATAATCAATTTCC+AGG 0.338927 4_1:+50651488 Msa0553460:CDS
AAAAGTGTACCTTAGATATA+TGG 0.341202 4_1:+50653354 Msa0553460:CDS
GAATAGAATAGAAGAAAGAT+TGG 0.341210 4_1:+50648775 Msa0553460:CDS
CGCCTGCGATTGATGTTTGA+AGG 0.347576 4_1:+50651968 Msa0553460:CDS
ACTAATGTGACACCTTTATA+AGG 0.347813 4_1:-50653274 None:intergenic
AAAGATGAGTCAAAGGATTC+AGG 0.350099 4_1:+50651806 Msa0553460:CDS
TATCAAACTCCAAAACAATT+AGG 0.352477 4_1:+50650904 Msa0553460:CDS
GTGAAACCTCACATCCAGTT+TGG 0.354521 4_1:+50649390 Msa0553460:CDS
CTCTTCTTTGTGAGCAAAAG+TGG 0.354586 4_1:+50652292 Msa0553460:CDS
GTATTGAGAGTGTGTGGATA+TGG 0.355131 4_1:+50652041 Msa0553460:CDS
TATAAAGGTGTCACATTAGT+TGG 0.356625 4_1:+50653277 Msa0553460:CDS
GTATAGACGTCCGTTTCTTC+CGG 0.360883 4_1:-50653053 None:intergenic
TTAGTGAAGTAGATGATAGA+TGG 0.370012 4_1:+50648702 Msa0553460:CDS
CTTGCAGAATTACATCTATC+AGG 0.371372 4_1:+50651617 Msa0553460:CDS
ATTGCATGTCCTTGTGATAA+AGG 0.371643 4_1:-50648974 None:intergenic
AACGGTCTTATAACTGTTCC+AGG 0.374298 4_1:-50653145 None:intergenic
ATGTTTGCAACTTTCACATT+TGG 0.376507 4_1:-50652989 None:intergenic
CTATAATGGTAGTTTATTCA+TGG 0.378222 4_1:+50652108 Msa0553460:CDS
GGAATAACAAGTTCAGTAAC+AGG 0.384570 4_1:+50651827 Msa0553460:CDS
ATACATGGAATGAATGGAAT+TGG 0.387500 4_1:+50653236 Msa0553460:CDS
GGTATAGTGGGGAACTATAA+TGG 0.392064 4_1:+50652094 Msa0553460:CDS
GAGACTTCTGTGTGGATCAT+TGG 0.402156 4_1:+50648884 Msa0553460:CDS
GATCCAATATTTATAAAGTC+TGG 0.409480 4_1:+50649452 Msa0553460:CDS
TTATTCTTCACTACTTCAGT+TGG 0.414956 4_1:+50650868 Msa0553460:CDS
TGCCAGGTATCGCAAGGAAA+AGG 0.420185 4_1:+50652251 Msa0553460:CDS
GGAGTGTGCTTCTTAGAGAA+TGG 0.422543 4_1:+50652143 Msa0553460:CDS
CATCATGGAAGAGGCACATA+TGG 0.423310 4_1:+50650424 Msa0553460:CDS
GAATCATCAGAAAATGGAAT+TGG 0.423365 4_1:-50653840 None:intergenic
GAACATGGAACACCTTATAA+AGG 0.423412 4_1:+50653262 Msa0553460:CDS
TTTATATGAGGAAATTCAAA+TGG 0.428889 4_1:+50652948 Msa0553460:CDS
TGTAAAGTGTACCCCTTAGA+TGG 0.429129 4_1:-50650480 None:intergenic
TATATAGGAAGGCACTTTAG+TGG 0.429506 4_1:+50650729 Msa0553460:intron
TGGGTTTGGTCAAGGATCAT+TGG 0.430251 4_1:+50654095 Msa0553460:three_prime_UTR
CCGTTATCAAAATCATTAAC+AGG 0.431059 4_1:+50653163 Msa0553460:CDS
TAGGGGAGAAAGAATGGGTT+TGG 0.434715 4_1:+50654081 Msa0553460:three_prime_UTR
ATCTTCGTCACCGGAAGAAA+CGG 0.436588 4_1:+50653043 Msa0553460:CDS
AGTAGTGAAGAATAAAGAAA+TGG 0.438853 4_1:-50650860 None:intergenic
CATCAACAACTAAATATGTT+TGG 0.439311 4_1:+50651696 Msa0553460:CDS
TCACCTGGTCCTAGCTTTGA+AGG 0.439520 4_1:+50653301 Msa0553460:CDS
CAACCATGGGATAGATTGCC+AGG 0.443851 4_1:+50652235 Msa0553460:CDS
TGGCAGATGCATGTGCAAAT+TGG 0.444038 4_1:+50649368 Msa0553460:intron
GTGGCCTTGTTGAGTACAAC+TGG 0.444449 4_1:+50653212 Msa0553460:CDS
GGTTATTTCTGCACAAAGAA+AGG 0.445162 4_1:+50649990 Msa0553460:CDS
AACTTGTAGGGGAGAAAGAA+TGG 0.445628 4_1:+50654075 Msa0553460:three_prime_UTR
GCATTCCATCCTTCACTAGC+TGG 0.446291 4_1:-50651734 None:intergenic
AATTGATTCCCTTCAAAGCT+AGG 0.451462 4_1:-50653310 None:intergenic
CTGGAGTTGTGACAGATGAT+AGG 0.451751 4_1:+50649471 Msa0553460:CDS
TTGGCAGAAATACAACTTGT+AGG 0.456608 4_1:+50654062 Msa0553460:three_prime_UTR
GAATTACATCTATCAGGAAT+AGG 0.457368 4_1:+50651623 Msa0553460:CDS
GTTGAACCTAGGTTTATATG+AGG 0.461770 4_1:+50652936 Msa0553460:intron
ACTGGAATACATGGAATGAA+TGG 0.462122 4_1:+50653230 Msa0553460:CDS
AAAGGAAGAAATGCTGTTGT+TGG 0.465279 4_1:+50652208 Msa0553460:CDS
AGTGAAACTACCATGTGATT+TGG 0.469008 4_1:+50648730 Msa0553460:CDS
TCTAAGGGGTACACTTTACA+TGG 0.471522 4_1:+50650483 Msa0553460:CDS
CACTATACGTGTCCGACACC+CGG 0.472076 4_1:+50654349 Msa0553460:three_prime_UTR
TTTGCAACTTTCACATTTGG+AGG 0.472090 4_1:-50652986 None:intergenic
CTACATTTGCTTCACCTGGT+TGG 0.473424 4_1:-50650162 None:intergenic
TTACTACTAATCCAATCATC+AGG 0.474961 4_1:-50651941 None:intergenic
ACAACAAAGTGAATGATTTG+TGG 0.475854 4_1:+50653080 Msa0553460:CDS
TGTGTGAATTCAATCCAAAC+TGG 0.476391 4_1:-50649404 None:intergenic
CATATGTGCCTCTTCCATGA+TGG 0.480008 4_1:-50650423 None:intergenic
AATTGTTCTGATATGAGAAA+AGG 0.481713 4_1:+50652190 Msa0553460:CDS
CCGACTTGTAATGGTAAGCC+TGG 0.482409 4_1:-50651563 None:intergenic
TAAGAGACGGTTGAACCTAT+AGG 0.484366 4_1:+50654294 Msa0553460:three_prime_UTR
AGTATCCTTCCGACTTGTAA+TGG 0.485479 4_1:-50651572 None:intergenic
TGGCAGAAATACAACTTGTA+GGG 0.486865 4_1:+50654063 Msa0553460:three_prime_UTR
TACAGCTGTGAATGGTATAG+TGG 0.486961 4_1:+50652081 Msa0553460:CDS
TATGAGGAAATTCAAATGGA+AGG 0.488326 4_1:+50652952 Msa0553460:CDS
GCTGCTACATTTGCTTCACC+TGG 0.489201 4_1:-50650166 None:intergenic
GAAGATTACATCAAAGGAAG+TGG 0.489306 4_1:+50650755 Msa0553460:CDS
ATAGAATCAAATGCTGAGAT+TGG 0.495602 4_1:-50653114 None:intergenic
GAGAAGTAGTATACACCATA+AGG 0.501786 4_1:+50650212 Msa0553460:CDS
TGGAAGATTATTGCAGTTCA+CGG 0.504744 4_1:+50652312 Msa0553460:CDS
ACTTTCGGATTAGACATGTC+CGG 0.504901 4_1:-50654368 None:intergenic
TATTTGAACTTAGAGATGGC+AGG 0.504942 4_1:+50653868 Msa0553460:three_prime_UTR
GATTTGAGCAGAAAACTGAT+AGG 0.505867 4_1:+50648669 Msa0553460:CDS
GCCAGGTATCGCAAGGAAAA+GGG 0.506419 4_1:+50652252 Msa0553460:CDS
GTCACATTAGTTGGTTCACC+TGG 0.512923 4_1:+50653286 Msa0553460:CDS
ATGCCTGTCATACAGTTTCG+CGG 0.513955 4_1:-50651782 None:intergenic
CTAGATTCATCTCTCAAAGA+TGG 0.516955 4_1:-50650829 None:intergenic
AGATTAAATTCTTCTTCTGA+AGG 0.517199 4_1:-50651917 None:intergenic
GGTGATGTATACAGTTCTAC+TGG 0.518537 4_1:+50650369 Msa0553460:intron
TAGAACAGATGGATAAATCA+TGG 0.519769 4_1:+50650139 Msa0553460:intron
GGAGTGGTAATGAGATAGCA+TGG 0.522959 4_1:+50652164 Msa0553460:CDS
AGAAAGAATGGGTTTGGTCA+AGG 0.524066 4_1:+50654087 Msa0553460:three_prime_UTR
CTTTCGGATTAGACATGTCC+GGG 0.524594 4_1:-50654367 None:intergenic
ACTTGTAGGGGAGAAAGAAT+GGG 0.525155 4_1:+50654076 Msa0553460:three_prime_UTR
GGAAGAAATGCTGTTGTTGG+AGG 0.528790 4_1:+50652211 Msa0553460:CDS
GTGTCGTGTCTATAACCTAT+AGG 0.529050 4_1:-50654309 None:intergenic
ATACTCTTTGCACTAGATGA+TGG 0.533170 4_1:+50651590 Msa0553460:CDS
GTGTGGATCATTGGTGAAAG+TGG 0.534482 4_1:+50648893 Msa0553460:CDS
ACAGTAAATCAAAACCATCA+TGG 0.535608 4_1:+50650409 Msa0553460:CDS
GATAGTTCTACAGCTGTGAA+TGG 0.537031 4_1:+50652073 Msa0553460:CDS
TGGAAAGAAGATTACATCAA+AGG 0.538140 4_1:+50650749 Msa0553460:CDS
ACATCAAAGGAAGTGGAAAT+GGG 0.538225 4_1:+50650762 Msa0553460:CDS
TTGAGTACAACTGGAATACA+TGG 0.538673 4_1:+50653221 Msa0553460:CDS
AAAGCAGCAAGAGGCAAACC+AGG 0.539205 4_1:+50651545 Msa0553460:CDS
ACAGCTGTGAATGGTATAGT+GGG 0.543577 4_1:+50652082 Msa0553460:CDS
TCACCTTTGATACCATCTAA+GGG 0.543633 4_1:+50650468 Msa0553460:CDS
GCTATATTTGAACTTAGAGA+TGG 0.543911 4_1:+50653864 Msa0553460:three_prime_UTR
AAAGAAATTCTCTTTCTCAA+AGG 0.545065 4_1:-50648848 None:intergenic
GGAATAGGTGGTGAGAGTGC+AGG 0.548161 4_1:+50651638 Msa0553460:CDS
AATCAAAACCATCATGGAAG+AGG 0.550305 4_1:+50650415 Msa0553460:CDS
TTCCCTTCAAAGCTAGGACC+AGG 0.551345 4_1:-50653304 None:intergenic
AAGTGGAAATGGGTGGTCCA+TGG 0.557277 4_1:+50650772 Msa0553460:CDS
AGTTGATCAAGAATTATTCA+GGG 0.560071 4_1:+50653012 Msa0553460:CDS
TTGCAGAGGTTGAGCCTCCA+AGG 0.561226 4_1:+50650027 Msa0553460:CDS
TTCAATCCAAACTGGATGTG+AGG 0.567335 4_1:-50649396 None:intergenic
TGCCTTCAAACATCAATCGC+AGG 0.568851 4_1:-50651970 None:intergenic
ATAATCAATTTCCAGGAGAG+TGG 0.571794 4_1:+50651495 Msa0553460:CDS
TGGATAAATCATGGCCAACC+AGG 0.573431 4_1:+50650148 Msa0553460:CDS
GGACCGCGAAACTGTATGAC+AGG 0.573843 4_1:+50651779 Msa0553460:CDS
AGGCATAAAAGATGAGTCAA+AGG 0.574002 4_1:+50651799 Msa0553460:CDS
CACCTGGTCCTAGCTTTGAA+GGG 0.574722 4_1:+50653302 Msa0553460:CDS
ATTTGAACTTAGAGATGGCA+GGG 0.575756 4_1:+50653869 Msa0553460:three_prime_UTR
CATGATTTACCTTTATCACA+AGG 0.576154 4_1:+50648965 Msa0553460:CDS
CTGCACAAAGAAAGGAGCAC+TGG 0.577609 4_1:+50649998 Msa0553460:CDS
CATCACAGGTGACATATACA+AGG 0.581681 4_1:+50653817 Msa0553460:intron
GAATGGAATTGGATAGAACA+TGG 0.583237 4_1:+50653247 Msa0553460:CDS
TACCCCTTAGATGGTATCAA+AGG 0.583542 4_1:-50650471 None:intergenic
GATTAGACATGTCCGGGTGT+CGG 0.591323 4_1:-50654361 None:intergenic
ATGCACCAGCTAGTGAAGGA+TGG 0.598528 4_1:+50651729 Msa0553460:CDS
CACCTTTGATACCATCTAAG+GGG 0.602390 4_1:+50650469 Msa0553460:CDS
GAGAATATAATCTTCGTCAC+CGG 0.605805 4_1:+50653034 Msa0553460:CDS
ATACCTGGCAATCTATCCCA+TGG 0.608069 4_1:-50652238 None:intergenic
ATGTTTGTATTGAGAGTGTG+TGG 0.611275 4_1:+50652035 Msa0553460:CDS
AAAGTGGTTGTATCTATGAG+AGG 0.612158 4_1:+50648909 Msa0553460:CDS
TTACATGCAAAAGCAGCAAG+AGG 0.625420 4_1:+50651536 Msa0553460:CDS
ACAAAATTATTGGATTACAG+TGG 0.626195 4_1:+50654139 Msa0553460:three_prime_UTR
TGTGATAAAGGTAAATCATG+AGG 0.627922 4_1:-50648962 None:intergenic
GGCAGAAATACAACTTGTAG+GGG 0.633865 4_1:+50654064 Msa0553460:three_prime_UTR
TTAGATGCACCAGCTAGTGA+AGG 0.636429 4_1:+50651725 Msa0553460:CDS
ATAGATTGCCAGGTATCGCA+AGG 0.637406 4_1:+50652245 Msa0553460:CDS
GCTTACCATTACAAGTCGGA+AGG 0.639615 4_1:+50651567 Msa0553460:CDS
AAAGAAGAGTGAATCTTCAG+TGG 0.641168 4_1:-50652278 None:intergenic
TTACATCTATCAGGAATAGG+TGG 0.642141 4_1:+50651626 Msa0553460:CDS
TTCACTTCACTATTAACACA+AGG 0.647859 4_1:-50648755 None:intergenic
CTGTTGTTGGAGGTCAACCA+TGG 0.654459 4_1:+50652221 Msa0553460:CDS
AGCACTGGTAGAGCTTGCAG+AGG 0.657701 4_1:+50650013 Msa0553460:CDS
TATTCCAGTTGTACTCAACA+AGG 0.675295 4_1:-50653216 None:intergenic
ACATGGAAGTGGAAGGACTG+TGG 0.677918 4_1:+50653385 Msa0553460:CDS
TCAAAGGAAGTGGAAATGGG+TGG 0.682979 4_1:+50650765 Msa0553460:CDS
ACACAAGGCACCAAATCACA+TGG 0.686237 4_1:-50648740 None:intergenic
CAGCTGTGAATGGTATAGTG+GGG 0.690877 4_1:+50652083 Msa0553460:CDS
GAGTATTGCACAGAAGAGCG+CGG 0.705234 4_1:+50651758 Msa0553460:CDS
GTGCTTCTTAGAGAATGGAG+TGG 0.705824 4_1:+50652148 Msa0553460:CDS
CCAGGCTTACCATTACAAGT+CGG 0.705851 4_1:+50651563 Msa0553460:CDS
TGTTGTTGGAGGTCAACCAT+GGG 0.717332 4_1:+50652222 Msa0553460:CDS
AAATGTCTGAGACTTCTGTG+TGG 0.723420 4_1:+50648876 Msa0553460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAATTAAATTTTATA+AGG + chr4_1:50653732-50653751 Msa0553460:intron 0.0%
!!! TAATTGTTATATTTTTTGTT+TGG + chr4_1:50649348-50649367 Msa0553460:intron 10.0%
!! TAGTATAAATAAATGAATTA+AGG + chr4_1:50652603-50652622 Msa0553460:intron 10.0%
!!! AAAATGTTTGATGATTATAT+AGG + chr4_1:50650714-50650733 Msa0553460:intron 15.0%
!!! TTAATTTGTTCAAACAAATA+AGG - chr4_1:50651092-50651111 None:intergenic 15.0%
!! ATTTCCATAAATATGAATAT+AGG - chr4_1:50652896-50652915 None:intergenic 15.0%
!! TATATTCATATTTATGGAAA+TGG + chr4_1:50652895-50652914 Msa0553460:intron 15.0%
!!! TATTTTTATCCATATATCTA+AGG - chr4_1:50653366-50653385 None:intergenic 15.0%
!!! ATGCTTTTAAACAAAAAATA+AGG + chr4_1:50653538-50653557 Msa0553460:intron 15.0%
!!! TGCTTTTAAACAAAAAATAA+GGG + chr4_1:50653539-50653558 Msa0553460:intron 15.0%
!! TTTGATCTTAATTAAAGTAA+TGG + chr4_1:50653769-50653788 Msa0553460:intron 15.0%
!!! TTTTGTAAACATAAACTATT+TGG - chr4_1:50654125-50654144 None:intergenic 15.0%
!! GTTTATGTTTACAAAATTAT+TGG + chr4_1:50654129-50654148 Msa0553460:three_prime_UTR 15.0%
!!! CACTTCTCTTAATATTATTT+TGG + chr4_1:50649071-50649090 Msa0553460:intron 20.0%
!!! TATTATTTTGGTTTATCTAC+CGG + chr4_1:50649083-50649102 Msa0553460:intron 20.0%
!!! TTAAAATTAGTTTGAGATTC+AGG + chr4_1:50649508-50649527 Msa0553460:intron 20.0%
!!! TAAAATTAGTTTGAGATTCA+GGG + chr4_1:50649509-50649528 Msa0553460:intron 20.0%
!!! AGTTTTTTCTAAAATCATAG+TGG - chr4_1:50649599-50649618 None:intergenic 20.0%
!! TTATAACATACACATCTAAA+GGG - chr4_1:50649740-50649759 None:intergenic 20.0%
!! TTTATAACATACACATCTAA+AGG - chr4_1:50649741-50649760 None:intergenic 20.0%
!! TTTAGATGTGTATGTTATAA+AGG + chr4_1:50649740-50649759 Msa0553460:intron 20.0%
!! ACATCAAAAAACAAAATATG+AGG + chr4_1:50649780-50649799 Msa0553460:intron 20.0%
!!! CATCAAACATTTTAGAAAAA+TGG - chr4_1:50650707-50650726 None:intergenic 20.0%
!!! AATAAGTTGAAAACAACATA+TGG + chr4_1:50651172-50651191 Msa0553460:intron 20.0%
!! ATAAGTAATAATGATGTTCT+TGG - chr4_1:50651868-50651887 None:intergenic 20.0%
!!! TATTACTTATCTCTAGAAAA+AGG + chr4_1:50651878-50651897 Msa0553460:CDS 20.0%
!!! AGGATCTAAACAATTTTTTT+GGG - chr4_1:50652682-50652701 None:intergenic 20.0%
!!! AAGGATCTAAACAATTTTTT+TGG - chr4_1:50652683-50652702 None:intergenic 20.0%
!! AGAGACTAAAAGAATAATTT+GGG + chr4_1:50652852-50652871 Msa0553460:intron 20.0%
!! ATGACCTATATTCATATTTA+TGG + chr4_1:50652889-50652908 Msa0553460:intron 20.0%
!! TTTATATGAGGAAATTCAAA+TGG + chr4_1:50652948-50652967 Msa0553460:CDS 20.0%
!! GATATATGGATAAAAATACA+TGG + chr4_1:50653368-50653387 Msa0553460:CDS 20.0%
!!! TATTTTTATCTGCTAAAGAA+GGG - chr4_1:50653414-50653433 None:intergenic 20.0%
!!! ATATTTTTATCTGCTAAAGA+AGG - chr4_1:50653415-50653434 None:intergenic 20.0%
!! ACATTATGAAATATAGAATG+TGG - chr4_1:50653961-50653980 None:intergenic 20.0%
!! GTTATAAGAAATCTAATATC+TGG + chr4_1:50653979-50653998 Msa0553460:intron 20.0%
! GAATAGAATAGAAGAAAGAT+TGG + chr4_1:50648775-50648794 Msa0553460:CDS 25.0%
! AAAGAAATTCTCTTTCTCAA+AGG - chr4_1:50648851-50648870 None:intergenic 25.0%
!!! AAGTTATTTTGAAGAGCTTA+TGG - chr4_1:50649164-50649183 None:intergenic 25.0%
!!! TTATCTTTTGTTATCGAGAT+AGG + chr4_1:50649228-50649247 Msa0553460:intron 25.0%
! ATAACAATTAGTCAACATGA+AGG - chr4_1:50649338-50649357 None:intergenic 25.0%
! GATCCAATATTTATAAAGTC+TGG + chr4_1:50649452-50649471 Msa0553460:CDS 25.0%
! ACTCCAGACTTTATAAATAT+TGG - chr4_1:50649458-50649477 None:intergenic 25.0%
!! AAAATTAGTTTGAGATTCAG+GGG + chr4_1:50649510-50649529 Msa0553460:intron 25.0%
! GTAATTCAAATATATGTGTC+TGG - chr4_1:50649904-50649923 None:intergenic 25.0%
!! TCAAAACTTGAATTTTACCT+TGG - chr4_1:50650047-50650066 None:intergenic 25.0%
! TAAGAAAATATTGCTAATCC+AGG + chr4_1:50650097-50650116 Msa0553460:intron 25.0%
! TCTATATGTATGGCAAAATA+GGG - chr4_1:50650123-50650142 None:intergenic 25.0%
! TTCTATATGTATGGCAAAAT+AGG - chr4_1:50650124-50650143 None:intergenic 25.0%
!! AACAACATTCTTCATCTTTT+TGG + chr4_1:50650319-50650338 Msa0553460:intron 25.0%
!!! ATCTTTGTTTCTTTTAACCA+AGG + chr4_1:50650527-50650546 Msa0553460:CDS 25.0%
! CTAAAACCATGATATCAAAT+AGG + chr4_1:50650554-50650573 Msa0553460:intron 25.0%
! ACATTTCCTATTTGATATCA+TGG - chr4_1:50650563-50650582 None:intergenic 25.0%
! TGTAGAATTCCATATTAATG+AGG + chr4_1:50650643-50650662 Msa0553460:intron 25.0%
!! TGTTTGATGATTATATAGGA+AGG + chr4_1:50650718-50650737 Msa0553460:intron 25.0%
!!! TAGATGTCAAATTTTGATGT+GGG - chr4_1:50650804-50650823 None:intergenic 25.0%
!!! ATAGATGTCAAATTTTGATG+TGG - chr4_1:50650805-50650824 None:intergenic 25.0%
! AGTAGTGAAGAATAAAGAAA+TGG - chr4_1:50650863-50650882 None:intergenic 25.0%
! TATCAAACTCCAAAACAATT+AGG + chr4_1:50650904-50650923 Msa0553460:CDS 25.0%
! TTAGGTCAGTTAACTTATTA+TGG + chr4_1:50650922-50650941 Msa0553460:intron 25.0%
! CTATAATTCATAAGTTATCG+TGG + chr4_1:50651137-50651156 Msa0553460:intron 25.0%
!!! GTTTTCCTTCTAAAATTTTG+TGG - chr4_1:50651674-50651693 None:intergenic 25.0%
! CATCAACAACTAAATATGTT+TGG + chr4_1:50651696-50651715 Msa0553460:CDS 25.0%
! AGATTAAATTCTTCTTCTGA+AGG - chr4_1:50651920-50651939 None:intergenic 25.0%
! AATTTAATCTTCCTGATGAT+TGG + chr4_1:50651930-50651949 Msa0553460:CDS 25.0%
! CTATAATGGTAGTTTATTCA+TGG + chr4_1:50652108-50652127 Msa0553460:CDS 25.0%
!!! TTATTCATGGTTGATACTTT+TGG + chr4_1:50652121-50652140 Msa0553460:CDS 25.0%
!!! TATTCATGGTTGATACTTTT+GGG + chr4_1:50652122-50652141 Msa0553460:CDS 25.0%
! AATTGTTCTGATATGAGAAA+AGG + chr4_1:50652190-50652209 Msa0553460:CDS 25.0%
! TTATAAATCCCTCTAAATAC+AGG + chr4_1:50652636-50652655 Msa0553460:intron 25.0%
!!! TCTAAACAATTTTTTTGGGA+GGG - chr4_1:50652678-50652697 None:intergenic 25.0%
!!! ATCTAAACAATTTTTTTGGG+AGG - chr4_1:50652679-50652698 None:intergenic 25.0%
! CAGAGACTAAAAGAATAATT+TGG + chr4_1:50652851-50652870 Msa0553460:intron 25.0%
! GAGACTAAAAGAATAATTTG+GGG + chr4_1:50652853-50652872 Msa0553460:intron 25.0%
! AGACTAAAAGAATAATTTGG+GGG + chr4_1:50652854-50652873 Msa0553460:intron 25.0%
! AATGTTTAAATGTTGAACCT+AGG + chr4_1:50652925-50652944 Msa0553460:intron 25.0%
! TAGTTGATCAAGAATTATTC+AGG + chr4_1:50653011-50653030 Msa0553460:CDS 25.0%
! AGTTGATCAAGAATTATTCA+GGG + chr4_1:50653012-50653031 Msa0553460:CDS 25.0%
!! AATCATTCACTTTGTTGTAT+TGG - chr4_1:50653078-50653097 None:intergenic 25.0%
!!! CCTGTTAATGATTTTGATAA+CGG - chr4_1:50653166-50653185 None:intergenic 25.0%
!! AAAAGTGTACCTTAGATATA+TGG + chr4_1:50653354-50653373 Msa0553460:CDS 25.0%
! AATCTTTAAATGTGATCCTA+AGG + chr4_1:50653474-50653493 Msa0553460:intron 25.0%
! TAAAGACTGAAAAGTGAATA+CGG - chr4_1:50653615-50653634 None:intergenic 25.0%
!! ATGATTTTCTACCAGATAAT+TGG - chr4_1:50653926-50653945 None:intergenic 25.0%
!!! CTTGTTTTTAACATCTTTAC+TGG + chr4_1:50654033-50654052 Msa0553460:intron 25.0%
! ACAAAATTATTGGATTACAG+TGG + chr4_1:50654139-50654158 Msa0553460:three_prime_UTR 25.0%
! ACATCTTTGTTAGCATAATA+AGG - chr4_1:50654267-50654286 None:intergenic 25.0%
! AGATGTAAAAATGTAAGAGA+CGG + chr4_1:50654281-50654300 Msa0553460:three_prime_UTR 25.0%
TTAGTGAAGTAGATGATAGA+TGG + chr4_1:50648702-50648721 Msa0553460:CDS 30.0%
TTCACTTCACTATTAACACA+AGG - chr4_1:50648758-50648777 None:intergenic 30.0%
ATTGGAAGAAGAACATGAAT+TGG + chr4_1:50648793-50648812 Msa0553460:CDS 30.0%
GAAAAAGATGAGTTTGGATA+TGG + chr4_1:50648820-50648839 Msa0553460:CDS 30.0%
TGTGATAAAGGTAAATCATG+AGG - chr4_1:50648965-50648984 None:intergenic 30.0%
CATGATTTACCTTTATCACA+AGG + chr4_1:50648965-50648984 Msa0553460:CDS 30.0%
TGAATCAGGAAATCTTTATC+AGG + chr4_1:50649036-50649055 Msa0553460:intron 30.0%
GTTAAGTACTTATTCGAAAG+TGG + chr4_1:50649683-50649702 Msa0553460:intron 30.0%
! AAACTTGAATTTTACCTTGG+AGG - chr4_1:50650044-50650063 None:intergenic 30.0%
ATCCATCTGTTCTATATGTA+TGG - chr4_1:50650133-50650152 None:intergenic 30.0%
TAGAACAGATGGATAAATCA+TGG + chr4_1:50650139-50650158 Msa0553460:intron 30.0%
ACAACTATAACTGATGAATG+TGG + chr4_1:50650348-50650367 Msa0553460:intron 30.0%
ACAGTAAATCAAAACCATCA+TGG + chr4_1:50650409-50650428 Msa0553460:CDS 30.0%
CTTAAACGACCTCATTAATA+TGG - chr4_1:50650655-50650674 None:intergenic 30.0%
TGGAAAGAAGATTACATCAA+AGG + chr4_1:50650749-50650768 Msa0553460:CDS 30.0%
!! AGATGTCAAATTTTGATGTG+GGG - chr4_1:50650803-50650822 None:intergenic 30.0%
TTATTCTTCACTACTTCAGT+TGG + chr4_1:50650868-50650887 Msa0553460:CDS 30.0%
! GTTAACTGACCTAATTGTTT+TGG - chr4_1:50650916-50650935 None:intergenic 30.0%
! TAAGTACCTTGCTCTAAATT+AGG + chr4_1:50650995-50651014 Msa0553460:intron 30.0%
! AAGTACCTTGCTCTAAATTA+GGG + chr4_1:50650996-50651015 Msa0553460:intron 30.0%
! AAATTCCCTAATTTAGAGCA+AGG - chr4_1:50651004-50651023 None:intergenic 30.0%
ATACTATTTCGAAGAGCTTA+TGG - chr4_1:50651216-50651235 None:intergenic 30.0%
TGAGTAGGAAATATCAAGTA+TGG - chr4_1:50651323-50651342 None:intergenic 30.0%
! TTTTGCATGTATGGCTTTTA+AGG - chr4_1:50651378-50651397 None:intergenic 30.0%
! AGCATTTCATTTTGCATGTA+TGG - chr4_1:50651387-50651406 None:intergenic 30.0%
TTGAATTATCACATGAACAC+AGG + chr4_1:50651461-50651480 Msa0553460:intron 30.0%
TCTGCAAATAATCAATTTCC+AGG + chr4_1:50651488-50651507 Msa0553460:CDS 30.0%
GAATTACATCTATCAGGAAT+AGG + chr4_1:50651623-50651642 Msa0553460:CDS 30.0%
! CTAAAATTTTGTGGTAGAGA+TGG - chr4_1:50651665-50651684 None:intergenic 30.0%
! CTCTACCACAAAATTTTAGA+AGG + chr4_1:50651666-50651685 Msa0553460:CDS 30.0%
! TACTTATCTCTAGAAAAAGG+TGG + chr4_1:50651881-50651900 Msa0553460:CDS 30.0%
TTACTACTAATCCAATCATC+AGG - chr4_1:50651944-50651963 None:intergenic 30.0%
ATACATGTCAGTATCTTATC+CGG - chr4_1:50652448-50652467 None:intergenic 30.0%
AGTGTTATCATCATCTGTTT+AGG - chr4_1:50652516-50652535 None:intergenic 30.0%
ACTCTAATGTGATAAGCTTT+AGG - chr4_1:50652573-50652592 None:intergenic 30.0%
! GAAACTAAAAGTGGTTGTTT+TGG - chr4_1:50652713-50652732 None:intergenic 30.0%
ATCAAACAAACGAAGAATGA+TGG - chr4_1:50652738-50652757 None:intergenic 30.0%
!!! GATGTTAGTTTTCGTTTGTT+TGG - chr4_1:50652832-50652851 None:intergenic 30.0%
GAATTTCCTCATATAAACCT+AGG - chr4_1:50652945-50652964 None:intergenic 30.0%
TATGAGGAAATTCAAATGGA+AGG + chr4_1:50652952-50652971 Msa0553460:CDS 30.0%
ATGTTTGCAACTTTCACATT+TGG - chr4_1:50652992-50653011 None:intergenic 30.0%
ACAACAAAGTGAATGATTTG+TGG + chr4_1:50653080-50653099 Msa0553460:CDS 30.0%
ATAGAATCAAATGCTGAGAT+TGG - chr4_1:50653117-50653136 None:intergenic 30.0%
! TTGATTCTATCCAATTTTCC+TGG + chr4_1:50653127-50653146 Msa0553460:CDS 30.0%
TATAACTGTTCCAGGAAAAT+TGG - chr4_1:50653140-50653159 None:intergenic 30.0%
CCGTTATCAAAATCATTAAC+AGG + chr4_1:50653163-50653182 Msa0553460:CDS 30.0%
!! ATCTTCATGTTTTCAAGAGA+TGG + chr4_1:50653190-50653209 Msa0553460:CDS 30.0%
ATACATGGAATGAATGGAAT+TGG + chr4_1:50653236-50653255 Msa0553460:CDS 30.0%
ACTAATGTGACACCTTTATA+AGG - chr4_1:50653277-50653296 None:intergenic 30.0%
!! TATAAAGGTGTCACATTAGT+TGG + chr4_1:50653277-50653296 Msa0553460:CDS 30.0%
!! GGGAATCAATTACTTTTGAT+TGG + chr4_1:50653322-50653341 Msa0553460:CDS 30.0%
!! TTACTTTTGATTGGTTCAGA+TGG + chr4_1:50653331-50653350 Msa0553460:CDS 30.0%
TGGATAAAAATACATGGAAG+TGG + chr4_1:50653374-50653393 Msa0553460:CDS 30.0%
TAAAAATACATGGAAGTGGA+AGG + chr4_1:50653378-50653397 Msa0553460:CDS 30.0%
TGTAGATCAATACTTACCTT+AGG - chr4_1:50653493-50653512 None:intergenic 30.0%
!! AAGTATTGATCTACACTTAC+TGG + chr4_1:50653498-50653517 Msa0553460:intron 30.0%
!!! AAACTGCATATTTTTAGTCC+CGG + chr4_1:50653644-50653663 Msa0553460:intron 30.0%
! TTTTGAATCTTATGCATCAC+AGG + chr4_1:50653803-50653822 Msa0553460:intron 30.0%
GAATCATCAGAAAATGGAAT+TGG - chr4_1:50653843-50653862 None:intergenic 30.0%
ATAGCAGAATCATCAGAAAA+TGG - chr4_1:50653849-50653868 None:intergenic 30.0%
GCTATATTTGAACTTAGAGA+TGG + chr4_1:50653864-50653883 Msa0553460:three_prime_UTR 30.0%
TTGGAAATAACAGTGAACTA+AGG - chr4_1:50653907-50653926 None:intergenic 30.0%
!! CACTGTTATTTCCAATTATC+TGG + chr4_1:50653912-50653931 Msa0553460:intron 30.0%
! GTTTTTAACATCTTTACTGG+TGG + chr4_1:50654036-50654055 Msa0553460:intron 30.0%
!!! CATCAAGTCATCAAGTTTTT+TGG - chr4_1:50654222-50654241 None:intergenic 30.0%
CTTTGTCGAAAAAACTGATG+TGG - chr4_1:50648641-50648660 None:intergenic 35.0%
GATTTGAGCAGAAAACTGAT+AGG + chr4_1:50648669-50648688 Msa0553460:CDS 35.0%
! AGCAGAAAACTGATAGGTTT+TGG + chr4_1:50648675-50648694 Msa0553460:CDS 35.0%
AGTGAAACTACCATGTGATT+TGG + chr4_1:50648730-50648749 Msa0553460:CDS 35.0%
GGATGAGAAAAAGATGAGTT+TGG + chr4_1:50648814-50648833 Msa0553460:CDS 35.0%
AAAGTGGTTGTATCTATGAG+AGG + chr4_1:50648909-50648928 Msa0553460:CDS 35.0%
! GTTGTATCTATGAGAGGTTT+TGG + chr4_1:50648915-50648934 Msa0553460:CDS 35.0%
!!! ATCTATGAGAGGTTTTGGAA+TGG + chr4_1:50648920-50648939 Msa0553460:CDS 35.0%
!!! GTTTTGGAATGGACTTGAAT+GGG + chr4_1:50648931-50648950 Msa0553460:CDS 35.0%
ATTGCATGTCCTTGTGATAA+AGG - chr4_1:50648977-50648996 None:intergenic 35.0%
ATTCTTGCTCTATCTGAATC+AGG + chr4_1:50649022-50649041 Msa0553460:intron 35.0%
AATAAGCCTTTAAGCTGAAC+AGG + chr4_1:50649271-50649290 Msa0553460:intron 35.0%
ATAAGCCTTTAAGCTGAACA+GGG + chr4_1:50649272-50649291 Msa0553460:intron 35.0%
TTAGTCAACATGAAGGACAA+AGG - chr4_1:50649331-50649350 None:intergenic 35.0%
TGTGTGAATTCAATCCAAAC+TGG - chr4_1:50649407-50649426 None:intergenic 35.0%
ACTAAGTGCATGTAGAACAA+TGG - chr4_1:50649665-50649684 None:intergenic 35.0%
ATGTGTCTGGATGAACTTAT+AGG - chr4_1:50649891-50649910 None:intergenic 35.0%
ACAAATCAACAGCACAAACT+AGG - chr4_1:50649960-50649979 None:intergenic 35.0%
!! TGTGCTGTTGATTTGTAAAC+AGG + chr4_1:50649964-50649983 Msa0553460:intron 35.0%
!! TGTTGATTTGTAAACAGGAG+AGG + chr4_1:50649969-50649988 Msa0553460:intron 35.0%
!! GGTTATTTCTGCACAAAGAA+AGG + chr4_1:50649990-50650009 Msa0553460:CDS 35.0%
TGCCATACATATAGAACAGA+TGG + chr4_1:50650128-50650147 Msa0553460:intron 35.0%
GAGAAGTAGTATACACCATA+AGG + chr4_1:50650212-50650231 Msa0553460:CDS 35.0%
AATCAAAACCATCATGGAAG+AGG + chr4_1:50650415-50650434 Msa0553460:CDS 35.0%
GCACATATGGCAAGAAAAAA+AGG + chr4_1:50650437-50650456 Msa0553460:CDS 35.0%
TTCACCTTTGATACCATCTA+AGG + chr4_1:50650467-50650486 Msa0553460:CDS 35.0%
TCACCTTTGATACCATCTAA+GGG + chr4_1:50650468-50650487 Msa0553460:CDS 35.0%
!!! ATCATGGTTTTAGTGTACCT+TGG - chr4_1:50650547-50650566 None:intergenic 35.0%
! TGTCTAGAGCATGTTTAACT+TGG + chr4_1:50650615-50650634 Msa0553460:intron 35.0%
!! TATATAGGAAGGCACTTTAG+TGG + chr4_1:50650729-50650748 Msa0553460:intron 35.0%
GAAGATTACATCAAAGGAAG+TGG + chr4_1:50650755-50650774 Msa0553460:CDS 35.0%
TACATCAAAGGAAGTGGAAA+TGG + chr4_1:50650761-50650780 Msa0553460:CDS 35.0%
ACATCAAAGGAAGTGGAAAT+GGG + chr4_1:50650762-50650781 Msa0553460:CDS 35.0%
!! GATGTCAAATTTTGATGTGG+GGG - chr4_1:50650802-50650821 None:intergenic 35.0%
CTAGATTCATCTCTCAAAGA+TGG - chr4_1:50650832-50650851 None:intergenic 35.0%
CTAGATGTATGTGTCTGTAA+TGG - chr4_1:50650967-50650986 None:intergenic 35.0%
AGACTCTTCATTAGACACTA+TGG + chr4_1:50651066-50651085 Msa0553460:intron 35.0%
AAATAGTATCACAGGTGTGT+AGG + chr4_1:50651227-50651246 Msa0553460:intron 35.0%
TTCAAATAAGCCAATCCAAG+CGG + chr4_1:50651262-50651281 Msa0553460:intron 35.0%
ATATAGATATAGAGTCCGCT+TGG - chr4_1:50651280-50651299 None:intergenic 35.0%
ATAATCAATTTCCAGGAGAG+TGG + chr4_1:50651495-50651514 Msa0553460:CDS 35.0%
ATACTCTTTGCACTAGATGA+TGG + chr4_1:50651590-50651609 Msa0553460:CDS 35.0%
CTTGCAGAATTACATCTATC+AGG + chr4_1:50651617-50651636 Msa0553460:CDS 35.0%
TTACATCTATCAGGAATAGG+TGG + chr4_1:50651626-50651645 Msa0553460:CDS 35.0%
AGGCATAAAAGATGAGTCAA+AGG + chr4_1:50651799-50651818 Msa0553460:CDS 35.0%
AAAGATGAGTCAAAGGATTC+AGG + chr4_1:50651806-50651825 Msa0553460:CDS 35.0%
GGAATAACAAGTTCAGTAAC+AGG + chr4_1:50651827-50651846 Msa0553460:CDS 35.0%
!!! TGAAGGCAAGTCATTTTTCT+TGG + chr4_1:50651985-50652004 Msa0553460:CDS 35.0%
!! TTTTTCTTGGTGACAAGTGA+TGG + chr4_1:50651998-50652017 Msa0553460:CDS 35.0%
! ATGTTTGTATTGAGAGTGTG+TGG + chr4_1:50652035-50652054 Msa0553460:CDS 35.0%
AAAGGAAGAAATGCTGTTGT+TGG + chr4_1:50652208-50652227 Msa0553460:CDS 35.0%
AAAGAAGAGTGAATCTTCAG+TGG - chr4_1:50652281-50652300 None:intergenic 35.0%
TGGAAGATTATTGCAGTTCA+CGG + chr4_1:50652312-50652331 Msa0553460:CDS 35.0%
CATTGCAAGTATTTGTCATC+TGG - chr4_1:50652352-50652371 None:intergenic 35.0%
AGATACTGACATGTATACAC+CGG + chr4_1:50652452-50652471 Msa0553460:intron 35.0%
TCTGCAATTTGTAGTTGACT+TGG + chr4_1:50652543-50652562 Msa0553460:intron 35.0%
!!! TGGTTGTTTTGGAAATGTGA+AGG - chr4_1:50652702-50652721 None:intergenic 35.0%
ATGATGGCAGAAACTAAAAG+TGG - chr4_1:50652722-50652741 None:intergenic 35.0%
GTTGAACCTAGGTTTATATG+AGG + chr4_1:50652936-50652955 Msa0553460:intron 35.0%
TTTGCAACTTTCACATTTGG+AGG - chr4_1:50652989-50653008 None:intergenic 35.0%
GAGAATATAATCTTCGTCAC+CGG + chr4_1:50653034-50653053 Msa0553460:CDS 35.0%
!! TTCATGTTTTCAAGAGATGG+TGG + chr4_1:50653193-50653212 Msa0553460:CDS 35.0%
TATTCCAGTTGTACTCAACA+AGG - chr4_1:50653219-50653238 None:intergenic 35.0%
TTGAGTACAACTGGAATACA+TGG + chr4_1:50653221-50653240 Msa0553460:CDS 35.0%
ACTGGAATACATGGAATGAA+TGG + chr4_1:50653230-50653249 Msa0553460:CDS 35.0%
GAATGGAATTGGATAGAACA+TGG + chr4_1:50653247-50653266 Msa0553460:CDS 35.0%
GAACATGGAACACCTTATAA+AGG + chr4_1:50653262-50653281 Msa0553460:CDS 35.0%
! AATTGATTCCCTTCAAAGCT+AGG - chr4_1:50653313-50653332 None:intergenic 35.0%
!!! CATATTTTTAGTCCCGGTTA+GGG + chr4_1:50653650-50653669 Msa0553460:intron 35.0%
TATTTGAACTTAGAGATGGC+AGG + chr4_1:50653868-50653887 Msa0553460:three_prime_UTR 35.0%
ATTTGAACTTAGAGATGGCA+GGG + chr4_1:50653869-50653888 Msa0553460:three_prime_UTR 35.0%
TTGGCAGAAATACAACTTGT+AGG + chr4_1:50654062-50654081 Msa0553460:three_prime_UTR 35.0%
TGGCAGAAATACAACTTGTA+GGG + chr4_1:50654063-50654082 Msa0553460:three_prime_UTR 35.0%
!!! AAGTCATCAAGTTTTTTGGC+TGG - chr4_1:50654218-50654237 None:intergenic 35.0%
! AAATGTCTGAGACTTCTGTG+TGG + chr4_1:50648876-50648895 Msa0553460:CDS 40.0%
!!! GGTTTTGGAATGGACTTGAA+TGG + chr4_1:50648930-50648949 Msa0553460:CDS 40.0%
CGTCTCACAAGTGTTAATTC+CGG - chr4_1:50649105-50649124 None:intergenic 40.0%
CGGAATTAACACTTGTGAGA+CGG + chr4_1:50649103-50649122 Msa0553460:intron 40.0%
TAGATCCCTGTTCAGCTTAA+AGG - chr4_1:50649280-50649299 None:intergenic 40.0%
TTCAATCCAAACTGGATGTG+AGG - chr4_1:50649399-50649418 None:intergenic 40.0%
!!! TTTGAGATTCAGGGGTGTTT+TGG + chr4_1:50649518-50649537 Msa0553460:intron 40.0%
!! TACACGACTTGGTGTATGTT+TGG + chr4_1:50649541-50649560 Msa0553460:intron 40.0%
!! GACTTGGTGTATGTTTGGAT+TGG + chr4_1:50649546-50649565 Msa0553460:intron 40.0%
AGGCATCAAGAGAGATCAAT+AGG - chr4_1:50649940-50649959 None:intergenic 40.0%
GTGCACATACACAAACCTTA+TGG - chr4_1:50650230-50650249 None:intergenic 40.0%
GGTGATGTATACAGTTCTAC+TGG + chr4_1:50650369-50650388 Msa0553460:intron 40.0%
CACCTTTGATACCATCTAAG+GGG + chr4_1:50650469-50650488 Msa0553460:CDS 40.0%
TACCCCTTAGATGGTATCAA+AGG - chr4_1:50650474-50650493 None:intergenic 40.0%
TGTAAAGTGTACCCCTTAGA+TGG - chr4_1:50650483-50650502 None:intergenic 40.0%
! TCTAAGGGGTACACTTTACA+TGG + chr4_1:50650483-50650502 Msa0553460:CDS 40.0%
AAGTTATCGTGGAGAGCTTA+AGG + chr4_1:50651148-50651167 Msa0553460:intron 40.0%
GCTCTTCGAAATAGTATCAC+AGG + chr4_1:50651219-50651238 Msa0553460:intron 40.0%
AAGACAAGCTGTTCTTGAGT+AGG - chr4_1:50651338-50651357 None:intergenic 40.0%
!!! TTGCTGCTTTTGCATGTAAG+GGG - chr4_1:50651535-50651554 None:intergenic 40.0%
!!! CTTGCTGCTTTTGCATGTAA+GGG - chr4_1:50651536-50651555 None:intergenic 40.0%
!!! TCTTGCTGCTTTTGCATGTA+AGG - chr4_1:50651537-50651556 None:intergenic 40.0%
TTACATGCAAAAGCAGCAAG+AGG + chr4_1:50651536-50651555 Msa0553460:CDS 40.0%
! AGTATCCTTCCGACTTGTAA+TGG - chr4_1:50651575-50651594 None:intergenic 40.0%
ACTAGCTGGTGCATCTAATA+TGG - chr4_1:50651723-50651742 None:intergenic 40.0%
! GTATTGAGAGTGTGTGGATA+TGG + chr4_1:50652041-50652060 Msa0553460:CDS 40.0%
! GATAGTTCTACAGCTGTGAA+TGG + chr4_1:50652073-50652092 Msa0553460:CDS 40.0%
TACAGCTGTGAATGGTATAG+TGG + chr4_1:50652081-50652100 Msa0553460:CDS 40.0%
ACAGCTGTGAATGGTATAGT+GGG + chr4_1:50652082-50652101 Msa0553460:CDS 40.0%
! GGTATAGTGGGGAACTATAA+TGG + chr4_1:50652094-50652113 Msa0553460:CDS 40.0%
CTCTTCTTTGTGAGCAAAAG+TGG + chr4_1:50652292-50652311 Msa0553460:CDS 40.0%
AGATTATTGCAGTTCACGGT+AGG + chr4_1:50652316-50652335 Msa0553460:intron 40.0%
!! CACAATTTTAGTGTCGTGTC+CGG - chr4_1:50652474-50652493 None:intergenic 40.0%
!! TTTTTGGGAGGGACTAAAAC+TGG - chr4_1:50652667-50652686 None:intergenic 40.0%
! AACGGTCTTATAACTGTTCC+AGG - chr4_1:50653148-50653167 None:intergenic 40.0%
!!! GCATATTTTTAGTCCCGGTT+AGG + chr4_1:50653649-50653668 Msa0553460:intron 40.0%
CATCACAGGTGACATATACA+AGG + chr4_1:50653817-50653836 Msa0553460:intron 40.0%
GGCAGAAATACAACTTGTAG+GGG + chr4_1:50654064-50654083 Msa0553460:three_prime_UTR 40.0%
AACTTGTAGGGGAGAAAGAA+TGG + chr4_1:50654075-50654094 Msa0553460:three_prime_UTR 40.0%
ACTTGTAGGGGAGAAAGAAT+GGG + chr4_1:50654076-50654095 Msa0553460:three_prime_UTR 40.0%
! AGAAAGAATGGGTTTGGTCA+AGG + chr4_1:50654087-50654106 Msa0553460:three_prime_UTR 40.0%
! TTGGCTGGTCATTCTCTTAT+AGG - chr4_1:50654203-50654222 None:intergenic 40.0%
TAAGAGACGGTTGAACCTAT+AGG + chr4_1:50654294-50654313 Msa0553460:three_prime_UTR 40.0%
GTGTCGTGTCTATAACCTAT+AGG - chr4_1:50654312-50654331 None:intergenic 40.0%
! ACACAAGGCACCAAATCACA+TGG - chr4_1:50648743-50648762 None:intergenic 45.0%
GAGACTTCTGTGTGGATCAT+TGG + chr4_1:50648884-50648903 Msa0553460:CDS 45.0%
GTGTGGATCATTGGTGAAAG+TGG + chr4_1:50648893-50648912 Msa0553460:CDS 45.0%
AACAGGGATCTACAAGTGGT+TGG + chr4_1:50649288-50649307 Msa0553460:intron 45.0%
!! GACAAAGGTACTTCTGCATG+TGG - chr4_1:50649316-50649335 None:intergenic 45.0%
TGGCAGATGCATGTGCAAAT+TGG + chr4_1:50649368-50649387 Msa0553460:intron 45.0%
GTGAAACCTCACATCCAGTT+TGG + chr4_1:50649390-50649409 Msa0553460:CDS 45.0%
CTGGAGTTGTGACAGATGAT+AGG + chr4_1:50649471-50649490 Msa0553460:CDS 45.0%
ATGTATGGCAAAATAGGGCC+TGG - chr4_1:50650118-50650137 None:intergenic 45.0%
TGGATAAATCATGGCCAACC+AGG + chr4_1:50650148-50650167 Msa0553460:CDS 45.0%
CTACATTTGCTTCACCTGGT+TGG - chr4_1:50650165-50650184 None:intergenic 45.0%
CATATGTGCCTCTTCCATGA+TGG - chr4_1:50650426-50650445 None:intergenic 45.0%
! CATCATGGAAGAGGCACATA+TGG + chr4_1:50650424-50650443 Msa0553460:CDS 45.0%
TCAAAGGAAGTGGAAATGGG+TGG + chr4_1:50650765-50650784 Msa0553460:CDS 45.0%
TTTGATGTGGGGGATTTCCA+TGG - chr4_1:50650792-50650811 None:intergenic 45.0%
GATATAGAGTCCGCTTGGAT+TGG - chr4_1:50651275-50651294 None:intergenic 45.0%
! TGATGACTTTTCCACTCTCC+TGG - chr4_1:50651509-50651528 None:intergenic 45.0%
CCAGGCTTACCATTACAAGT+CGG + chr4_1:50651563-50651582 Msa0553460:CDS 45.0%
GCTTACCATTACAAGTCGGA+AGG + chr4_1:50651567-50651586 Msa0553460:CDS 45.0%
TTAGATGCACCAGCTAGTGA+AGG + chr4_1:50651725-50651744 Msa0553460:CDS 45.0%
ATGCCTGTCATACAGTTTCG+CGG - chr4_1:50651785-50651804 None:intergenic 45.0%
TGCCTTCAAACATCAATCGC+AGG - chr4_1:50651973-50651992 None:intergenic 45.0%
CAGCTGTGAATGGTATAGTG+GGG + chr4_1:50652083-50652102 Msa0553460:CDS 45.0%
GGAGTGTGCTTCTTAGAGAA+TGG + chr4_1:50652143-50652162 Msa0553460:CDS 45.0%
GTGCTTCTTAGAGAATGGAG+TGG + chr4_1:50652148-50652167 Msa0553460:CDS 45.0%
! GGAGTGGTAATGAGATAGCA+TGG + chr4_1:50652164-50652183 Msa0553460:CDS 45.0%
GGAAGAAATGCTGTTGTTGG+AGG + chr4_1:50652211-50652230 Msa0553460:CDS 45.0%
TGTTGTTGGAGGTCAACCAT+GGG + chr4_1:50652222-50652241 Msa0553460:CDS 45.0%
ATACCTGGCAATCTATCCCA+TGG - chr4_1:50652241-50652260 None:intergenic 45.0%
! ATAGATTGCCAGGTATCGCA+AGG + chr4_1:50652245-50652264 Msa0553460:CDS 45.0%
TGTCTGTGTCAGTGCTTCAT+AGG - chr4_1:50652419-50652438 None:intergenic 45.0%
!! ATGAAGCACTGACACAGACA+TGG + chr4_1:50652419-50652438 Msa0553460:intron 45.0%
TGGAAGGGCCTGTATTTAGA+GGG - chr4_1:50652647-50652666 None:intergenic 45.0%
CTAACAGAAATGCACGTCAC+AGG - chr4_1:50652798-50652817 None:intergenic 45.0%
CTGTGACGTGCATTTCTGTT+AGG + chr4_1:50652796-50652815 Msa0553460:intron 45.0%
ATCTTCGTCACCGGAAGAAA+CGG + chr4_1:50653043-50653062 Msa0553460:CDS 45.0%
GTATAGACGTCCGTTTCTTC+CGG - chr4_1:50653056-50653075 None:intergenic 45.0%
! GTCACATTAGTTGGTTCACC+TGG + chr4_1:50653286-50653305 Msa0553460:CDS 45.0%
ACATCTTTACTGGTGGCAGT+TGG + chr4_1:50654043-50654062 Msa0553460:intron 45.0%
! TAGGGGAGAAAGAATGGGTT+TGG + chr4_1:50654081-50654100 Msa0553460:three_prime_UTR 45.0%
! TGGGTTTGGTCAAGGATCAT+TGG + chr4_1:50654095-50654114 Msa0553460:three_prime_UTR 45.0%
GCTGAACAGGGATCTACAAG+TGG + chr4_1:50649284-50649303 Msa0553460:intron 50.0%
!!! GGGTGTTTTGGTACACGACT+TGG + chr4_1:50649530-50649549 Msa0553460:intron 50.0%
! CTGCACAAAGAAAGGAGCAC+TGG + chr4_1:50649998-50650017 Msa0553460:CDS 50.0%
GCTGCTACATTTGCTTCACC+TGG - chr4_1:50650169-50650188 None:intergenic 50.0%
AAGTGGAAATGGGTGGTCCA+TGG + chr4_1:50650772-50650791 Msa0553460:CDS 50.0%
AAAGCAGCAAGAGGCAAACC+AGG + chr4_1:50651545-50651564 Msa0553460:CDS 50.0%
! CCGACTTGTAATGGTAAGCC+TGG - chr4_1:50651566-50651585 None:intergenic 50.0%
ATGCACCAGCTAGTGAAGGA+TGG + chr4_1:50651729-50651748 Msa0553460:CDS 50.0%
GCATTCCATCCTTCACTAGC+TGG - chr4_1:50651737-50651756 None:intergenic 50.0%
! GAGTATTGCACAGAAGAGCG+CGG + chr4_1:50651758-50651777 Msa0553460:CDS 50.0%
CGCCTGCGATTGATGTTTGA+AGG + chr4_1:50651968-50651987 Msa0553460:CDS 50.0%
CTGTTGTTGGAGGTCAACCA+TGG + chr4_1:50652221-50652240 Msa0553460:CDS 50.0%
CAACCATGGGATAGATTGCC+AGG + chr4_1:50652235-50652254 Msa0553460:CDS 50.0%
! TGCCAGGTATCGCAAGGAAA+AGG + chr4_1:50652251-50652270 Msa0553460:CDS 50.0%
! GCCAGGTATCGCAAGGAAAA+GGG + chr4_1:50652252-50652271 Msa0553460:CDS 50.0%
! ACCCTTTTCCTTGCGATACC+TGG - chr4_1:50652256-50652275 None:intergenic 50.0%
ACTGACACAGACATGGACAC+CGG + chr4_1:50652426-50652445 Msa0553460:intron 50.0%
CTGGAAGGGCCTGTATTTAG+AGG - chr4_1:50652648-50652667 None:intergenic 50.0%
GGGAGGGACTAAAACTGGAA+GGG - chr4_1:50652662-50652681 None:intergenic 50.0%
TGGGAGGGACTAAAACTGGA+AGG - chr4_1:50652663-50652682 None:intergenic 50.0%
!! GTGGCCTTGTTGAGTACAAC+TGG + chr4_1:50653212-50653231 Msa0553460:CDS 50.0%
!! TCACCTGGTCCTAGCTTTGA+AGG + chr4_1:50653301-50653320 Msa0553460:CDS 50.0%
!! CACCTGGTCCTAGCTTTGAA+GGG + chr4_1:50653302-50653321 Msa0553460:CDS 50.0%
TTCCCTTCAAAGCTAGGACC+AGG - chr4_1:50653307-50653326 None:intergenic 50.0%
ACATGGAAGTGGAAGGACTG+TGG + chr4_1:50653385-50653404 Msa0553460:CDS 50.0%
TACACGCTTCAGTCCCTAAC+CGG - chr4_1:50653666-50653685 None:intergenic 50.0%
GATTAGACATGTCCGGGTGT+CGG - chr4_1:50654364-50654383 None:intergenic 50.0%
!! AGCACTGGTAGAGCTTGCAG+AGG + chr4_1:50650013-50650032 Msa0553460:CDS 55.0%
TTGCAGAGGTTGAGCCTCCA+AGG + chr4_1:50650027-50650046 Msa0553460:CDS 55.0%
! GGAATAGGTGGTGAGAGTGC+AGG + chr4_1:50651638-50651657 Msa0553460:CDS 55.0%
GGACCGCGAAACTGTATGAC+AGG + chr4_1:50651779-50651798 Msa0553460:CDS 55.0%
GAAATGCACGTCACAGGACG+TGG - chr4_1:50652792-50652811 None:intergenic 55.0%
ACACGCTTCAGTCCCTAACC+GGG - chr4_1:50653665-50653684 None:intergenic 55.0%
CACTATACGTGTCCGACACC+CGG + chr4_1:50654349-50654368 Msa0553460:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 50648599 50654385 50648599 ID=Msa0553460;Name=Msa0553460
chr4_1 mRNA 50648599 50654385 50648599 ID=Msa0553460-mRNA-1;Parent=Msa0553460;Name=Msa0553460-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0.66|0.7|1|1|1|10|358|816
chr4_1 exon 50648599 50649000 50648599 ID=Msa0553460-mRNA-1:exon:14298;Parent=Msa0553460-mRNA-1
chr4_1 exon 50649374 50649495 50649374 ID=Msa0553460-mRNA-1:exon:14299;Parent=Msa0553460-mRNA-1
chr4_1 exon 50649986 50650048 50649986 ID=Msa0553460-mRNA-1:exon:14300;Parent=Msa0553460-mRNA-1
chr4_1 exon 50650147 50650233 50650147 ID=Msa0553460-mRNA-1:exon:14301;Parent=Msa0553460-mRNA-1
chr4_1 exon 50650383 50650548 50650383 ID=Msa0553460-mRNA-1:exon:14302;Parent=Msa0553460-mRNA-1
chr4_1 exon 50650736 50650925 50650736 ID=Msa0553460-mRNA-1:exon:14303;Parent=Msa0553460-mRNA-1
chr4_1 exon 50651483 50652333 50651483 ID=Msa0553460-mRNA-1:exon:14304;Parent=Msa0553460-mRNA-1
chr4_1 exon 50652947 50653484 50652947 ID=Msa0553460-mRNA-1:exon:14305;Parent=Msa0553460-mRNA-1
chr4_1 exon 50653825 50653890 50653825 ID=Msa0553460-mRNA-1:exon:14306;Parent=Msa0553460-mRNA-1
chr4_1 exon 50654062 50654385 50654062 ID=Msa0553460-mRNA-1:exon:14307;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50648599 50649000 50648599 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50649374 50649495 50649374 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50649986 50650048 50649986 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50650147 50650233 50650147 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50650383 50650548 50650383 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50650736 50650925 50650736 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50651483 50652333 50651483 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50652947 50653484 50652947 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 CDS 50653825 50653856 50653825 ID=Msa0553460-mRNA-1:cds;Parent=Msa0553460-mRNA-1
chr4_1 three_prime_UTR 50653857 50653890 50653857 ID=Msa0553460-mRNA-1:three_prime_utr;Parent=Msa0553460-mRNA-1
chr4_1 three_prime_UTR 50654062 50654385 50654062 ID=Msa0553460-mRNA-1:three_prime_utr;Parent=Msa0553460-mRNA-1
Gene Sequence

>Msa0553460

ATGAGATTTTGTATAGTTGAGGTTTCTGCTTCATGTTGTCCACATCAGTTTTTTCGACAAAGCAATCGACGATTTGAGCAGAAAACTGATAGGTTTTGGAAGTTTAGTGAAGTAGATGATAGATGGATTGAAGTGAAACTACCATGTGATTTGGTGCCTTGTGTTAATAGTGAAGTGAATAGAATAGAAGAAAGATTGGAAGAAGAACATGAATTGGATGAGAAAAAGATGAGTTTGGATATGGTTTTGCCTTTGAGAAAGAGAATTTCTTTGACAAAAATGTCTGAGACTTCTGTGTGGATCATTGGTGAAAGTGGTTGTATCTATGAGAGGTTTTGGAATGGACTTGAATGGGTGATTGCTCCTCATGATTTACCTTTATCACAAGGACATGCAATTGCAATGCATGTGCAAATTGGTGAAACCTCACATCCAGTTTGGATTGAATTCACACATACACTCAATCAAATCACAGATTCTGATCCAATATTTATAAAGTCTGGAGTTGTGACAGATGATAGGAAGAGAGGTTATTTCTGCACAAAGAAAGGAGCACTGGTAGAGCTTGCAGAGGTTGAGCCTCCAAGATGGATAAATCATGGCCAACCAGGTGAAGCAAATGTAGCAGCAATAGCTGATGTTGCTTCTACACGAGAAGTAGTATACACCATAAGTTCTACTGGAGATCTTTATGAATATAACAGTAAATCAAAACCATCATGGAAGAGGCACATATGGCAAGAAAAAAAGGCACAAGTTTCACCTTTGATACCATCTAAGGGGTACACTTTACATGGATTAAGTGCTGATCATTCTGAATCTTTGTTTCTTTTAACCAAGGAAGGCACTTTAGTGGAAAGAAGATTACATCAAAGGAAGTGGAAATGGGTGGTCCATGGAAATCCCCCACATCAAAATTTGACATCTATTACACCATCTTTGAGAGATGAATCTAGTGAAACTTCCATTTCTTTATTCTTCACTACTTCAGTTGGATCTGTTTTTGAGTATCAAACTCCAAAACAATTAGGCACTTCTGCAAATAATCAATTTCCAGGAGAGTGGAAAAGTCATCAGCACCCCTTACATGCAAAAGCAGCAAGAGGCAAACCAGGCTTACCATTACAAGTCGGAAGGATACTCTTTGCACTAGATGATGGTAGACTTGCAGAATTACATCTATCAGGAATAGGTGGTGAGAGTGCAGGACCATCTCTACCACAAAATTTTAGAAGGAAAACATCATCAACAACTAAATATGTTTGGTCCATATTAGATGCACCAGCTAGTGAAGGATGGAATGCAGAGTATTGCACAGAAGAGCGCGGACCGCGAAACTGTATGACAGGCATAAAAGATGAGTCAAAGGATTCAGGAATAACAAGTTCAGTAACAGGTAGAAGAAAACAAAGCCAAGAACATCATTATTACTTATCTCTAGAAAAAGGTGGTGAACTGATTATTCCTTCAGAAGAAGAATTTAATCTTCCTGATGATTGGATTAGTAGTAATTTTCGCCTGCGATTGATGTTTGAAGGCAAGTCATTTTTCTTGGTGACAAGTGATGGTTTGATTTTTGAACATGTTTGTATTGAGAGTGTGTGGATATGGCTGAAACATGATAGTTCTACAGCTGTGAATGGTATAGTGGGGAACTATAATGGTAGTTTATTCATGGTTGATACTTTTGGGAGTGTGCTTCTTAGAGAATGGAGTGGTAATGAGATAGCATGGAAGAATTGTTCTGATATGAGAAAAGGAAGAAATGCTGTTGTTGGAGGTCAACCATGGGATAGATTGCCAGGTATCGCAAGGAAAAGGGTTACCACTGAAGATTCACTCTTCTTTGTGAGCAAAAGTGGAAGATTATTGCAGTTCACGGTTTATATGAGGAAATTCAAATGGAAGGATTGCAAAAATCCTCCAAATGTGAAAGTTGCAAACATAGTTGATCAAGAATTATTCAGGGAGAATATAATCTTCGTCACCGGAAGAAACGGACGTCTATACCAATACAACAAAGTGAATGATTTGTGGCATGAACATTACCAATCTCAGCATTTGATTCTATCCAATTTTCCTGGAACAGTTATAAGACCGTTATCAAAATCATTAACAGGCTCAATCTTCATGTTTTCAAGAGATGGTGGCCTTGTTGAGTACAACTGGAATACATGGAATGAATGGAATTGGATAGAACATGGAACACCTTATAAAGGTGTCACATTAGTTGGTTCACCTGGTCCTAGCTTTGAAGGGAATCAATTACTTTTGATTGGTTCAGATGGAAAAGTGTACCTTAGATATATGGATAAAAATACATGGAAGTGGAAGGACTGTGGTTTCCCTTCTTTAGCAGATAAAAATATTGATGCAGATAGAGAAGAATTCAATGATGAAGATGACTTAATCTTTAAATGTGACATATACAAGGCCAATTCCATTTTCTGA

Protein sequence

>Msa0553460

MRFCIVEVSASCCPHQFFRQSNRRFEQKTDRFWKFSEVDDRWIEVKLPCDLVPCVNSEVNRIEERLEEEHELDEKKMSLDMVLPLRKRISLTKMSETSVWIIGESGCIYERFWNGLEWVIAPHDLPLSQGHAIAMHVQIGETSHPVWIEFTHTLNQITDSDPIFIKSGVVTDDRKRGYFCTKKGALVELAEVEPPRWINHGQPGEANVAAIADVASTREVVYTISSTGDLYEYNSKSKPSWKRHIWQEKKAQVSPLIPSKGYTLHGLSADHSESLFLLTKEGTLVERRLHQRKWKWVVHGNPPHQNLTSITPSLRDESSETSISLFFTTSVGSVFEYQTPKQLGTSANNQFPGEWKSHQHPLHAKAARGKPGLPLQVGRILFALDDGRLAELHLSGIGGESAGPSLPQNFRRKTSSTTKYVWSILDAPASEGWNAEYCTEERGPRNCMTGIKDESKDSGITSSVTGRRKQSQEHHYYLSLEKGGELIIPSEEEFNLPDDWISSNFRLRLMFEGKSFFLVTSDGLIFEHVCIESVWIWLKHDSSTAVNGIVGNYNGSLFMVDTFGSVLLREWSGNEIAWKNCSDMRKGRNAVVGGQPWDRLPGIARKRVTTEDSLFFVSKSGRLLQFTVYMRKFKWKDCKNPPNVKVANIVDQELFRENIIFVTGRNGRLYQYNKVNDLWHEHYQSQHLILSNFPGTVIRPLSKSLTGSIFMFSRDGGLVEYNWNTWNEWNWIEHGTPYKGVTLVGSPGPSFEGNQLLLIGSDGKVYLRYMDKNTWKWKDCGFPSLADKNIDADREEFNDEDDLIFKCDIYKANSIF*