AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475490 MtrunA17_Chr3g0132751 96.657 359 11 1 1 358 1 359 0.0 709
Msa0475490 MtrunA17_Chr4g0049741 44.860 321 131 8 54 358 29 319 1.51e-77 241
Msa0475490 MtrunA17_Chr5g0427661 48.000 250 115 7 12 252 14 257 3.34e-62 200
Msa0475490 MtrunA17_Chr3g0132761 52.821 195 78 5 68 258 71 255 9.27e-58 189
Msa0475490 MtrunA17_Chr3g0102511 52.410 166 55 4 162 306 10 172 1.01e-39 147
Msa0475490 MtrunA17_Chr4g0002231 48.958 96 40 3 147 235 42 135 3.72e-23 94.0
Msa0475490 MtrunA17_Chr4g0002261 59.322 59 23 1 112 169 6 64 1.32e-14 68.2
Msa0475490 MtrunA17_Chr4g0002251 52.381 63 21 2 194 256 2 55 1.23e-13 65.5
Msa0475490 MtrunA17_Chr3g0091641 57.143 49 21 0 122 170 490 538 8.66e-12 66.2
Msa0475490 MtrunA17_Chr4g0061021 57.143 49 21 0 122 170 497 545 3.54e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475490 AT3G21175.2 58.470 183 67 4 68 243 79 259 9.13e-62 200
Msa0475490 AT3G21175.1 56.831 183 72 3 68 243 79 261 1.02e-59 194
Msa0475490 AT1G51600.1 52.736 201 76 5 68 253 83 279 1.23e-58 192
Msa0475490 AT1G51600.2 52.736 201 76 5 68 253 83 279 1.23e-58 192
Msa0475490 AT4G24470.1 51.412 177 82 3 68 243 83 256 9.29e-51 172
Msa0475490 AT4G24470.2 51.412 177 82 3 68 243 83 256 9.29e-51 172
Msa0475490 AT4G24470.3 51.412 177 82 3 68 243 83 256 1.25e-50 172
Msa0475490 AT3G21175.3 51.449 138 60 3 68 198 79 216 1.90e-32 121

Find 143 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAAACTCACAGAGATTC+AGG 0.223095 3_3:+78724313 None:intergenic
ACCAAACTGATATTCAAATT+AGG 0.228352 3_3:+78721435 None:intergenic
CATGCATTGCACAAAGTTCT+TGG 0.241152 3_3:+78724141 None:intergenic
CCAAACTGATATTCAAATTA+GGG 0.255832 3_3:+78721436 None:intergenic
TTCATTTCAACTCTCTTCTA+TGG 0.262209 3_3:-78729423 Msa0475490:exon
GATAATCTTCCTTGAGTGTT+TGG 0.263324 3_3:-78721575 Msa0475490:three_prime_UTR
AGTTCAGCTGTGGGCATGCC+TGG 0.281391 3_3:+78726997 None:intergenic
GGATATTCTTCATGTAGATA+TGG 0.286797 3_3:-78721780 Msa0475490:three_prime_UTR
ATAATCTTCCTTGAGTGTTT+GGG 0.304901 3_3:-78721574 Msa0475490:three_prime_UTR
GCTATTCTTCGTGAAAGATT+TGG 0.306955 3_3:+78726837 None:intergenic
GCAGCTGCAGTTGCAGTTGC+AGG 0.307759 3_3:+78729245 None:intergenic
TCCTGGAAACTTTGATTAGA+AGG 0.311641 3_3:-78721851 Msa0475490:exon
TGCCATTTGATCAGAGTAAC+AGG 0.315044 3_3:-78726975 Msa0475490:CDS
GATACAGATATTGACATTCC+TGG 0.340740 3_3:-78721868 Msa0475490:CDS
GAAGTTTAGGCTTGTGCTGC+TGG 0.343501 3_3:-78721404 Msa0475490:three_prime_UTR
GGACTCTTAGTGGGAGCATT+TGG 0.345347 3_3:-78721383 Msa0475490:three_prime_UTR
CAAATTAGGGGTCCATCCTT+TGG 0.356036 3_3:+78721449 None:intergenic
GCTGGTCCGCGACGCATTGC+AGG 0.357972 3_3:+78724168 None:intergenic
CCCTAATTTGAATATCAGTT+TGG 0.359772 3_3:-78721436 Msa0475490:three_prime_UTR
ATTGGTAATTTGTCATTCTT+CGG 0.372377 3_3:-78722200 Msa0475490:CDS
TCCTGCAATCTCTAGGGCTT+GGG 0.375005 3_3:-78726876 Msa0475490:intron
ACCAGACGACTTTGCTCAAC+AGG 0.377857 3_3:+78723456 None:intergenic
AGAGCTTCTCCACCCTTGAT+AGG 0.380566 3_3:+78721674 None:intergenic
TGATGATACTATGGATGAAT+TGG 0.387456 3_3:-78729315 Msa0475490:CDS
ACCTTCTAATCAAAGTTTCC+AGG 0.390784 3_3:+78721850 None:intergenic
CAATGATATTAGACAGTTAT+GGG 0.400631 3_3:-78721741 Msa0475490:three_prime_UTR
TGCTAGGATGCATCGGGAAA+AGG 0.402415 3_3:-78724419 Msa0475490:intron
TCAATAGCTGGAATTGTTGC+AGG 0.402850 3_3:+78729374 None:intergenic
ACTCACAGAGATTCAGGATT+AGG 0.406041 3_3:+78724319 None:intergenic
TGATAGCAATCTTCAAAACT+AGG 0.409454 3_3:-78729448 Msa0475490:five_prime_UTR
TGAAGAAACAAATGGTAATT+CGG 0.411662 3_3:-78729291 Msa0475490:CDS
ACAGTTGGCTTGACATCAAC+AGG 0.416226 3_3:+78722561 None:intergenic
GCTAGGATGCATCGGGAAAA+GGG 0.419663 3_3:-78724418 Msa0475490:intron
ACCTTCTGATGTGTGACATC+GGG 0.425377 3_3:+78729164 None:intergenic
GGAACCAGGGCTTTGCTTCA+AGG 0.426853 3_3:+78724384 None:intergenic
TGATGATGGTGATGATACTA+TGG 0.427625 3_3:-78729324 Msa0475490:CDS
GATATTCTTCATGTAGATAT+GGG 0.431370 3_3:-78721779 Msa0475490:three_prime_UTR
CACAAAGTTCTTGGTCCAGC+TGG 0.446059 3_3:+78724150 None:intergenic
TTGTGCTGCTGGACTCTTAG+TGG 0.448234 3_3:-78721393 Msa0475490:three_prime_UTR
GCAATGCATGCGGCCTCATG+TGG 0.449902 3_3:-78724128 Msa0475490:CDS
CTCTAGTTGGAATTCAGCAC+AGG 0.449996 3_3:-78724362 Msa0475490:CDS
CATGAAGAATATCCAACAAA+TGG 0.450396 3_3:+78721789 None:intergenic
TTGGTGGTGTGCTGAAGTTT+AGG 0.453013 3_3:-78721417 Msa0475490:three_prime_UTR
GTCAAGCCAACTGTTCTTGA+AGG 0.454609 3_3:-78722552 Msa0475490:CDS
GCAATGATATTAGACAGTTA+TGG 0.454625 3_3:-78721742 Msa0475490:three_prime_UTR
CACCCACATAATGAATTACT+TGG 0.456717 3_3:+78721826 None:intergenic
ATTTCTTGCTAGGATGCATC+GGG 0.457873 3_3:-78724425 Msa0475490:intron
CTTTCTAATCCTTCAGATGC+AGG 0.461274 3_3:-78721907 Msa0475490:CDS
TTAGACAACAGTCCATTTGT+TGG 0.462042 3_3:-78721801 Msa0475490:three_prime_UTR
GCAATGCGTCGCGGACCAGC+TGG 0.462401 3_3:-78724165 Msa0475490:CDS
AGCAAAATGACCAACCTTGT+TGG 0.463402 3_3:+78724104 None:intergenic
GGAGGAAGTGGTGCGCAGCC+AGG 0.464266 3_3:-78727015 Msa0475490:CDS
TCCTGTTGAGCAAAGTCGTC+TGG 0.466212 3_3:-78723457 Msa0475490:intron
ACCTTCCGCACCAACAGTCT+TGG 0.467444 3_3:+78722398 None:intergenic
TTATTCTGCAATATTGATGC+TGG 0.472672 3_3:-78721634 Msa0475490:three_prime_UTR
ATGGCAAACATAGCTTTGTA+TGG 0.476366 3_3:+78721257 None:intergenic
ATGAAGTGGTAATCCTATCA+AGG 0.480064 3_3:-78721687 Msa0475490:three_prime_UTR
TTAGACAGTTATGGGAAAGT+AGG 0.481758 3_3:-78721733 Msa0475490:three_prime_UTR
ACCCTGTTACTCTGATCAAA+TGG 0.485919 3_3:+78726973 None:intergenic
TAATTTGAATATCAGTTTGG+TGG 0.486318 3_3:-78721433 Msa0475490:three_prime_UTR
GAAGAATAGCCTCCTTGGTC+AGG 0.487750 3_3:-78726824 Msa0475490:CDS
GAGTCTCGTTCTGAGTTCCT+TGG 0.493363 3_3:-78729476 Msa0475490:five_prime_UTR
TCAATATTGCAGAATAATGT+CGG 0.496407 3_3:+78721640 None:intergenic
TCCAAGACTGTTGGTGCGGA+AGG 0.498699 3_3:-78722399 Msa0475490:CDS
AAAGCCCTGGTTCCTCTAGT+TGG 0.498939 3_3:-78724375 Msa0475490:CDS
TGTGCTGCTGGACTCTTAGT+GGG 0.500062 3_3:-78721392 Msa0475490:three_prime_UTR
GAAATTTAGAGATAAAACTT+TGG 0.501624 3_3:-78721481 Msa0475490:three_prime_UTR
GGTAATTCGGTGAACGTTGA+AGG 0.501879 3_3:-78729278 Msa0475490:CDS
TTCACGAAGAATAGCCTCCT+TGG 0.502425 3_3:-78726829 Msa0475490:CDS
CGGCCTCATGTGGGCCAACA+AGG 0.505964 3_3:-78724118 Msa0475490:intron
GAACCAGGGCTTTGCTTCAA+GGG 0.507428 3_3:+78724385 None:intergenic
TATTTCTTGCTAGGATGCAT+CGG 0.512222 3_3:-78724426 Msa0475490:intron
TTCGGAAAATGATGATGAGC+AGG 0.513065 3_3:-78722182 Msa0475490:intron
GATAGCAATCTTCAAAACTA+GGG 0.513390 3_3:-78729447 Msa0475490:five_prime_UTR
TGATGTATAATTGCTTGACT+TGG 0.513708 3_3:-78721536 Msa0475490:three_prime_UTR
TTAGACATTCCTGCATCTGA+AGG 0.515486 3_3:+78721898 None:intergenic
GCTGCAGCTGCAACACGTAT+TGG 0.518862 3_3:-78729227 Msa0475490:CDS
GTACCAAGTAATTCATTATG+TGG 0.520173 3_3:-78721829 Msa0475490:three_prime_UTR
AATTCCCCTTCAAGAACAGT+TGG 0.521168 3_3:+78722546 None:intergenic
TGGAATTCAGCACAGGGTGC+TGG 0.521463 3_3:-78724355 Msa0475490:CDS
TGTATGGAATAAAATAGATA+AGG 0.530458 3_3:+78721273 None:intergenic
CAATATTGCAGAATAATGTC+GGG 0.530929 3_3:+78721641 None:intergenic
TCTCTAAATTTCAGGTAGCA+AGG 0.533563 3_3:+78721492 None:intergenic
TCGTCGTCGTCATCAATAGC+TGG 0.535781 3_3:+78729362 None:intergenic
ATCAAATGGCAGTTCAGCTG+TGG 0.540344 3_3:+78726987 None:intergenic
TACCTTCTGATGTGTGACAT+CGG 0.541157 3_3:+78729163 None:intergenic
GAAGAACCTTCCAAGACTGT+TGG 0.545293 3_3:-78722408 Msa0475490:CDS
GACACTCAGAGATCTCAGTA+AGG 0.560391 3_3:-78723493 Msa0475490:CDS
GCACAGGGTGCTGGTCAAGA+TGG 0.560830 3_3:-78724346 Msa0475490:CDS
GCACCCTTGAAGCAAAGCCC+TGG 0.567134 3_3:-78724388 Msa0475490:CDS
ACTACAACTACCTCATCACC+AGG 0.568839 3_3:+78722354 None:intergenic
TCAAGCCAACTGTTCTTGAA+GGG 0.572288 3_3:-78722551 Msa0475490:CDS
TAGATACTCCGTGAGAAAAG+AGG 0.572399 3_3:-78726760 Msa0475490:CDS
CCCCGATGTCACACATCAGA+AGG 0.572507 3_3:-78729165 Msa0475490:intron
TTAGGGGTCCATCCTTTGGA+TGG 0.577646 3_3:+78721453 None:intergenic
ATTTCAACTCTCTTCTATGG+CGG 0.579097 3_3:-78729420 Msa0475490:exon
CTCAGAGATCTCAGTAAGGG+TGG 0.581454 3_3:-78723489 Msa0475490:CDS
TGGTGATGCCATCCAAAGGA+TGG 0.582601 3_3:-78721461 Msa0475490:three_prime_UTR
TGCAATCTCTAGGGCTTGGG+CGG 0.583296 3_3:-78726873 Msa0475490:intron
GAATTGGATGAAGAAACAAA+TGG 0.583383 3_3:-78729299 Msa0475490:CDS
TATGTAACAGCGAAATGAAG+TGG 0.583425 3_3:-78721701 Msa0475490:three_prime_UTR
TACCAAGTAATTCATTATGT+GGG 0.587977 3_3:-78721828 Msa0475490:three_prime_UTR
GCAGGATCCTCAGATGGAAG+AGG 0.588835 3_3:+78729392 None:intergenic
CAACCTTGTTGGCCCACATG+AGG 0.589336 3_3:+78724115 None:intergenic
TGCATCAAACCCTGGTGATG+AGG 0.590145 3_3:-78722364 Msa0475490:intron
GAATTCCAACTAGAGGAACC+AGG 0.591328 3_3:+78724370 None:intergenic
AACACGATCCCAAACACTCA+AGG 0.596955 3_3:+78721566 None:intergenic
CAATGCATGCGGCCTCATGT+GGG 0.602828 3_3:-78724127 Msa0475490:CDS
TGAAGTGGTAATCCTATCAA+GGG 0.608458 3_3:-78721686 Msa0475490:three_prime_UTR
TCAAATGGCAGTTCAGCTGT+GGG 0.609776 3_3:+78726988 None:intergenic
ATTGTTGCAGGATCCTCAGA+TGG 0.609966 3_3:+78729386 None:intergenic
TGATGACGACGACGACGATG+AGG 0.610620 3_3:-78729354 Msa0475490:CDS
ATGTCAATATCTGTATCTGA+AGG 0.610986 3_3:+78721874 None:intergenic
TCCGCACCAACAGTCTTGGA+AGG 0.612491 3_3:+78722402 None:intergenic
GGAACAACCTCTTCCATCTG+AGG 0.612918 3_3:-78729399 Msa0475490:CDS
GAAGAATGACAAATTACCAA+TGG 0.616321 3_3:+78722202 None:intergenic
GGATTAGAAAGCTCGACCAC+GGG 0.617309 3_3:+78721919 None:intergenic
CAAGCCAACTGTTCTTGAAG+GGG 0.619999 3_3:-78722550 Msa0475490:CDS
ACCTTCCAAGACTGTTGGTG+CGG 0.622461 3_3:-78722403 Msa0475490:CDS
CTAGGATGCATCGGGAAAAG+GGG 0.623092 3_3:-78724417 Msa0475490:intron
ATGTTCATATAAATAAACAC+TGG 0.628923 3_3:-78721317 Msa0475490:three_prime_UTR
TGAGAAAAGAGGTGGCAGAA+AGG 0.629475 3_3:-78726749 Msa0475490:intron
GATGAGGACTATACTGATGA+TGG 0.633851 3_3:-78729338 Msa0475490:CDS
AGACGTAGATGTCAACATTG+TGG 0.641093 3_3:-78724210 Msa0475490:CDS
AGGATTAGAAAGCTCGACCA+CGG 0.642905 3_3:+78721918 None:intergenic
AGTGGTAATCCTATCAAGGG+TGG 0.652646 3_3:-78721683 Msa0475490:three_prime_UTR
AGAACTTTGTGCAATGCATG+CGG 0.654215 3_3:-78724138 Msa0475490:CDS
CAAACTGATATTCAAATTAG+GGG 0.655176 3_3:+78721437 None:intergenic
ACTTTGGTGATGCCATCCAA+AGG 0.657076 3_3:-78721465 Msa0475490:three_prime_UTR
CTGTGCTGAATTCCAACTAG+AGG 0.664420 3_3:+78724363 None:intergenic
AATACTCCTGCAATGCGTCG+CGG 0.665782 3_3:-78724174 Msa0475490:CDS
ACACTCAGAGATCTCAGTAA+GGG 0.666946 3_3:-78723492 Msa0475490:CDS
TCTAGTTGGAATTCAGCACA+GGG 0.669194 3_3:-78724361 Msa0475490:CDS
ATACTCCGTGAGAAAAGAGG+TGG 0.671679 3_3:-78726757 Msa0475490:CDS
AATGATCATGCATCAAACCC+TGG 0.673623 3_3:-78722372 Msa0475490:CDS
AATTCCAACTAGAGGAACCA+GGG 0.673882 3_3:+78724371 None:intergenic
CCTTCTGATGTGTGACATCG+GGG 0.685593 3_3:+78729165 None:intergenic
ATATGACCTACAGGAACCCG+TGG 0.688581 3_3:-78721935 Msa0475490:intron
GTTGGCTTGACATCAACAGG+AGG 0.690482 3_3:+78722564 None:intergenic
TTGGCTTGACATCAACAGGA+GGG 0.707354 3_3:+78722565 None:intergenic
GCCATTTGATCAGAGTAACA+GGG 0.709466 3_3:-78726974 Msa0475490:intron
CTACAACTACCTCATCACCA+GGG 0.715371 3_3:+78722355 None:intergenic
TTCACGGTACCTGACCAAGG+AGG 0.733564 3_3:+78726815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTACAAATTTAAATAC+AGG + chr3_3:78723696-78723715 None:intergenic 10.0%
!!! AAAAACTATGTTTTTTTATT+AGG - chr3_3:78724763-78724782 Msa0475490:intron 10.0%
!!! AAAACTATGTTTTTTTATTA+GGG - chr3_3:78724764-78724783 Msa0475490:intron 10.0%
!!! AATTTAAAACACTTATAAAA+TGG + chr3_3:78725609-78725628 None:intergenic 10.0%
!!! ATTTTGTTGTATAATATTAT+TGG - chr3_3:78726293-78726312 Msa0475490:intron 10.0%
!!! TTTATTCTTTTAATTCAATT+TGG - chr3_3:78728521-78728540 Msa0475490:intron 10.0%
!!! TTATTCTTTTAATTCAATTT+GGG - chr3_3:78728522-78728541 Msa0475490:intron 10.0%
!! ATACATAATCAAGAAAATTA+TGG - chr3_3:78721863-78721882 Msa0475490:CDS 15.0%
!!! TAAGATTTTATGATTCAAAT+CGG + chr3_3:78722105-78722124 None:intergenic 15.0%
!!! ATTTTATTCATAAACTAAGA+CGG - chr3_3:78722569-78722588 Msa0475490:CDS 15.0%
!! AGAATAATCAGTTTAAAAAT+AGG + chr3_3:78722673-78722692 None:intergenic 15.0%
!!! AAATTTGAAACAATTTACAA+TGG + chr3_3:78723602-78723621 None:intergenic 15.0%
!!! TAACTTATAACCATAATTTT+GGG + chr3_3:78724456-78724475 None:intergenic 15.0%
!!! ATAACTTATAACCATAATTT+TGG + chr3_3:78724457-78724476 None:intergenic 15.0%
!!! AAACTATGTTTTTTTATTAG+GGG - chr3_3:78724765-78724784 Msa0475490:intron 15.0%
!!! TTCATTTTTAATATTTGAAC+AGG - chr3_3:78724788-78724807 Msa0475490:intron 15.0%
!!! TCATTTTTAATATTTGAACA+GGG - chr3_3:78724789-78724808 Msa0475490:intron 15.0%
!! ACAATGAATGTATTTATAAA+AGG + chr3_3:78725555-78725574 None:intergenic 15.0%
!!! AGAATTCGAAAATTTTAAAT+CGG + chr3_3:78725808-78725827 None:intergenic 15.0%
!! AATTGAGTTTACTTTAAATT+TGG + chr3_3:78725931-78725950 None:intergenic 15.0%
!! ATCAGAAATAAAAAGTAATA+AGG + chr3_3:78727224-78727243 None:intergenic 15.0%
!! ATATATTCATTACAAACTAT+TGG - chr3_3:78727529-78727548 Msa0475490:intron 15.0%
!! TATATTCATTACAAACTATT+GGG - chr3_3:78727530-78727549 Msa0475490:intron 15.0%
!! AAAAGTTTATTTGAAAATGT+TGG + chr3_3:78727921-78727940 None:intergenic 15.0%
!!! CAAATAAACTTTTTTGAAAA+TGG - chr3_3:78727928-78727947 Msa0475490:intron 15.0%
!!! TATTCTTTTAATTCAATTTG+GGG - chr3_3:78728523-78728542 Msa0475490:intron 15.0%
!! TTGTTTATAGACTGAAAATT+AGG - chr3_3:78721897-78721916 Msa0475490:CDS 20.0%
!! TGTTTCAAATCTTAACATAT+GGG - chr3_3:78722035-78722054 Msa0475490:intron 20.0%
!!! TAATCTTATTTTCGAAGAAT+CGG - chr3_3:78722180-78722199 Msa0475490:intron 20.0%
!!! ATTATTTCAAGTGTGATTTA+AGG - chr3_3:78722403-78722422 Msa0475490:CDS 20.0%
!! TGATTATTCTTAAACTCAAA+AGG - chr3_3:78722683-78722702 Msa0475490:intron 20.0%
!! ATTGAAAATATCACTTCTAT+AGG - chr3_3:78722789-78722808 Msa0475490:intron 20.0%
!! AAGCTTTACACATAATAATT+TGG - chr3_3:78723076-78723095 Msa0475490:intron 20.0%
!! AGCTTTACACATAATAATTT+GGG - chr3_3:78723077-78723096 Msa0475490:intron 20.0%
!! AAAAAAGAAATATTGATGTC+TGG - chr3_3:78723106-78723125 Msa0475490:intron 20.0%
!! ACTGTAATTTACAAAAACAT+AGG - chr3_3:78723257-78723276 Msa0475490:intron 20.0%
!!! TATATTAGTTCTGTAAAAGT+AGG + chr3_3:78723338-78723357 None:intergenic 20.0%
!!! ACTATTTTGATTTTGATCAT+GGG + chr3_3:78723380-78723399 None:intergenic 20.0%
!!! AACTATTTTGATTTTGATCA+TGG + chr3_3:78723381-78723400 None:intergenic 20.0%
!!! AAATAAATCATCACTTTTTG+GGG + chr3_3:78724139-78724158 None:intergenic 20.0%
!!! GAAATAAATCATCACTTTTT+GGG + chr3_3:78724140-78724159 None:intergenic 20.0%
!!! AGAAATAAATCATCACTTTT+TGG + chr3_3:78724141-78724160 None:intergenic 20.0%
!!! GTTATTTAGAGTTTAAATAG+AGG - chr3_3:78724728-78724747 Msa0475490:intron 20.0%
!!! TCTAGATATTTTAATGAACA+AGG + chr3_3:78724885-78724904 None:intergenic 20.0%
!!! TTTTAATACTATACTTGAAG+CGG + chr3_3:78725141-78725160 None:intergenic 20.0%
!! AAAAAATAATATGCTGAAAG+TGG - chr3_3:78725327-78725346 Msa0475490:intron 20.0%
!!! GTATAGATGTTATTTTCTTT+TGG - chr3_3:78725458-78725477 Msa0475490:intron 20.0%
!!! TAACAATATTTTATAGAGAC+CGG - chr3_3:78725670-78725689 Msa0475490:intron 20.0%
!! TTCATTTCTACTTATGAATT+TGG - chr3_3:78726365-78726384 Msa0475490:intron 20.0%
!!! TATAGATCATCAATAACTTT+TGG - chr3_3:78726983-78727002 Msa0475490:CDS 20.0%
!! TTCAAACTGGTTATTAAAAT+TGG + chr3_3:78727492-78727511 None:intergenic 20.0%
!!! ATTTTAAGTTGTTTTTAGAC+AGG - chr3_3:78727561-78727580 Msa0475490:intron 20.0%
!! GAAACATATTATCTTATCAA+TGG - chr3_3:78727588-78727607 Msa0475490:intron 20.0%
!! TCTATGACTTCATTAATAAA+AGG + chr3_3:78727774-78727793 None:intergenic 20.0%
!!! TATTTGAAAATGTTGGTAAA+AGG + chr3_3:78727914-78727933 None:intergenic 20.0%
!! TTAAGTTTAGTAGAAAACTT+GGG - chr3_3:78728075-78728094 Msa0475490:intron 20.0%
!! AAATTTCATTCAAGATGAAA+AGG + chr3_3:78728242-78728261 None:intergenic 20.0%
!!! CTATTTGCATAAAACTTTTA+TGG - chr3_3:78728384-78728403 Msa0475490:intron 20.0%
!!! ATTCTTTTAATTCAATTTGG+GGG - chr3_3:78728524-78728543 Msa0475490:intron 20.0%
!!! AAGTTTTATCTCTAAATTTC+AGG + chr3_3:78729352-78729371 None:intergenic 20.0%
!! GAAATTTAGAGATAAAACTT+TGG - chr3_3:78729352-78729371 Msa0475490:CDS 20.0%
!! ATGTTCATATAAATAAACAC+TGG - chr3_3:78729516-78729535 Msa0475490:five_prime_UTR 20.0%
!! TGTATGGAATAAAATAGATA+AGG + chr3_3:78729563-78729582 None:intergenic 20.0%
! AAAAAAAACAAGAGAAGAAG+AGG - chr3_3:78721292-78721311 Msa0475490:three_prime_UTR 25.0%
!! ACGAGACTCAAATTTTTATT+CGG + chr3_3:78721346-78721365 None:intergenic 25.0%
! TGAAGAAACAAATGGTAATT+CGG - chr3_3:78721542-78721561 Msa0475490:three_prime_UTR 25.0%
!!! AAGACATGTTTTTTTGGATT+TGG - chr3_3:78722006-78722025 Msa0475490:intron 25.0%
! GTGTTTCAAATCTTAACATA+TGG - chr3_3:78722034-78722053 Msa0475490:intron 25.0%
! GTTATTTATTAGATTGCTGT+CGG - chr3_3:78722060-78722079 Msa0475490:intron 25.0%
! TTATTTATTAGATTGCTGTC+GGG - chr3_3:78722061-78722080 Msa0475490:intron 25.0%
! TTTGGAAATGAAACAAAAGA+AGG + chr3_3:78722343-78722362 None:intergenic 25.0%
! AAATAAAATGCTTATAAGCG+TGG - chr3_3:78722537-78722556 Msa0475490:CDS 25.0%
!! AAAACATCAAAACTCTTTTC+TGG + chr3_3:78722740-78722759 None:intergenic 25.0%
!! ATAATGTCTAAAATACAAGC+AGG + chr3_3:78722870-78722889 None:intergenic 25.0%
! TTAGACATTATTACTTCAGT+CGG - chr3_3:78722879-78722898 Msa0475490:intron 25.0%
!!! ACACATAATAATTTGGGTTT+TGG - chr3_3:78723083-78723102 Msa0475490:intron 25.0%
!! GTTACGATATTCTTGTTTAA+CGG + chr3_3:78723209-78723228 None:intergenic 25.0%
! TTTCCATCACATATTCTTTA+AGG - chr3_3:78723301-78723320 Msa0475490:intron 25.0%
! AATCCTTAAAGAATATGTGA+TGG + chr3_3:78723307-78723326 None:intergenic 25.0%
!! CACTTAATTTTCAATATCAG+AGG + chr3_3:78723410-78723429 None:intergenic 25.0%
! TGTAAGTTATTAGCAAATCT+TGG - chr3_3:78723436-78723455 Msa0475490:intron 25.0%
! GTAAGTTATTAGCAAATCTT+GGG - chr3_3:78723437-78723456 Msa0475490:intron 25.0%
! ACAATATATCTAAAAATGCG+TGG - chr3_3:78723556-78723575 Msa0475490:intron 25.0%
! CAATATATCTAAAAATGCGT+GGG - chr3_3:78723557-78723576 Msa0475490:intron 25.0%
! AACTCCATCAGTATAATATT+GGG - chr3_3:78724262-78724281 Msa0475490:intron 25.0%
!! ATTTTCTCATATTCTCAAGA+AGG + chr3_3:78724352-78724371 None:intergenic 25.0%
!! ATTTAGAGTTTAAATAGAGG+AGG - chr3_3:78724731-78724750 Msa0475490:intron 25.0%
!! AATTTTCTTGATCTCCTTAT+GGG + chr3_3:78724859-78724878 None:intergenic 25.0%
!! TAATTTTCTTGATCTCCTTA+TGG + chr3_3:78724860-78724879 None:intergenic 25.0%
! ACTATGAACCTACTAATAAA+AGG - chr3_3:78724940-78724959 Msa0475490:intron 25.0%
! CTATGAACCTACTAATAAAA+GGG - chr3_3:78724941-78724960 Msa0475490:intron 25.0%
!! TCAAAAACCCTTTTATTAGT+AGG + chr3_3:78724951-78724970 None:intergenic 25.0%
! TATAGTATTAAAAATCGCAC+TGG - chr3_3:78725148-78725167 Msa0475490:intron 25.0%
!!! ATATTGTTATTTGTATGAGC+CGG + chr3_3:78725659-78725678 None:intergenic 25.0%
!! AACAATATTTTATAGAGACC+GGG - chr3_3:78725671-78725690 Msa0475490:intron 25.0%
!!! TAAATCGGTGTTTTAAAAAC+CGG + chr3_3:78725793-78725812 None:intergenic 25.0%
! GGTTATTGATAAAGACTAAT+CGG + chr3_3:78725910-78725929 None:intergenic 25.0%
! CTACTTCATGAAAAAGTTTA+GGG + chr3_3:78726019-78726038 None:intergenic 25.0%
! ACTACTTCATGAAAAAGTTT+AGG + chr3_3:78726020-78726039 None:intergenic 25.0%
! ATTATAATGTAAGTTGCATC+TGG - chr3_3:78726078-78726097 Msa0475490:intron 25.0%
!! TTTGACTTAATATTGAGTAG+AGG - chr3_3:78726187-78726206 Msa0475490:intron 25.0%
!!! AATATTATTGGCTCCTTTAA+AGG - chr3_3:78726305-78726324 Msa0475490:intron 25.0%
! AAATCAGACAAAACCTTTAA+AGG + chr3_3:78726321-78726340 None:intergenic 25.0%
!!! TCTGTGAGTTTTAAACATAT+TGG - chr3_3:78726528-78726547 Msa0475490:intron 25.0%
! TTGTCATTCATTATCTTTCA+TGG - chr3_3:78727055-78727074 Msa0475490:intron 25.0%
! TCAGCTGTAAACAATAAAAA+TGG + chr3_3:78727083-78727102 None:intergenic 25.0%
!!! AGATGTTGTATTTTGACTAT+AGG - chr3_3:78727172-78727191 Msa0475490:intron 25.0%
!! ATTTGCAATTGGCTTAATAA+AGG + chr3_3:78727442-78727461 None:intergenic 25.0%
! AAACTGGTTATTAAAATTGG+AGG + chr3_3:78727489-78727508 None:intergenic 25.0%
!! ATAACCAGTTTGAAATCAAA+TGG - chr3_3:78727498-78727517 Msa0475490:intron 25.0%
!! AAAACCATTTGATTTCAAAC+TGG + chr3_3:78727505-78727524 None:intergenic 25.0%
!!! AGTTTGAAATCAAATGGTTT+TGG - chr3_3:78727504-78727523 Msa0475490:intron 25.0%
! TAAGAGAGAATAATACAAGT+TGG - chr3_3:78727667-78727686 Msa0475490:intron 25.0%
! ATGAACTAATTACCTGTTTA+TGG - chr3_3:78727956-78727975 Msa0475490:intron 25.0%
! GTTAAGTTTAGTAGAAAACT+TGG - chr3_3:78728074-78728093 Msa0475490:intron 25.0%
!! ATTGGTAATTTGTCATTCTT+CGG - chr3_3:78728633-78728652 Msa0475490:intron 25.0%
! TACCAAGTAATTCATTATGT+GGG - chr3_3:78729005-78729024 Msa0475490:intron 25.0%
! GATATTCTTCATGTAGATAT+GGG - chr3_3:78729054-78729073 Msa0475490:intron 25.0%
! CAATGATATTAGACAGTTAT+GGG - chr3_3:78729092-78729111 Msa0475490:intron 25.0%
! TCAATATTGCAGAATAATGT+CGG + chr3_3:78729196-78729215 None:intergenic 25.0%
! CAAACTGATATTCAAATTAG+GGG + chr3_3:78729399-78729418 None:intergenic 25.0%
! CCAAACTGATATTCAAATTA+GGG + chr3_3:78729400-78729419 None:intergenic 25.0%
! ACCAAACTGATATTCAAATT+AGG + chr3_3:78729401-78729420 None:intergenic 25.0%
! TAATTTGAATATCAGTTTGG+TGG - chr3_3:78729400-78729419 Msa0475490:CDS 25.0%
! AGATTGCTATCAATTTTCCA+AGG + chr3_3:78721377-78721396 None:intergenic 30.0%
TGATAGCAATCTTCAAAACT+AGG - chr3_3:78721385-78721404 Msa0475490:three_prime_UTR 30.0%
GATAGCAATCTTCAAAACTA+GGG - chr3_3:78721386-78721405 Msa0475490:three_prime_UTR 30.0%
TTCATTTCAACTCTCTTCTA+TGG - chr3_3:78721410-78721429 Msa0475490:three_prime_UTR 30.0%
TGATGATACTATGGATGAAT+TGG - chr3_3:78721518-78721537 Msa0475490:three_prime_UTR 30.0%
GAATTGGATGAAGAAACAAA+TGG - chr3_3:78721534-78721553 Msa0475490:three_prime_UTR 30.0%
CTATGTTGCATGTATGTATA+CGG - chr3_3:78721803-78721822 Msa0475490:three_prime_UTR 30.0%
GATGTACTATTAATCGCTAA+GGG + chr3_3:78722256-78722275 None:intergenic 30.0%
TGATGTACTATTAATCGCTA+AGG + chr3_3:78722257-78722276 None:intergenic 30.0%
!!! CATGAGAGTTTTAAGTCATT+TGG + chr3_3:78722361-78722380 None:intergenic 30.0%
TATAAAATCCTAACCAAGGT+AGG + chr3_3:78722509-78722528 None:intergenic 30.0%
GTGTTATAAAATCCTAACCA+AGG + chr3_3:78722513-78722532 None:intergenic 30.0%
AAACTAAGACGGTGTAATAA+TGG - chr3_3:78722580-78722599 Msa0475490:intron 30.0%
AACTAAGACGGTGTAATAAT+GGG - chr3_3:78722581-78722600 Msa0475490:intron 30.0%
TGTAAAGGTTGTAATGTCAA+AGG - chr3_3:78722614-78722633 Msa0475490:intron 30.0%
! TGATGTTTTGTAGAGTTGTA+AGG - chr3_3:78722751-78722770 Msa0475490:intron 30.0%
! ATATTTTCAATGCAGAGAGA+TGG + chr3_3:78722780-78722799 None:intergenic 30.0%
TACAAACACCAGATATGATA+TGG + chr3_3:78722916-78722935 None:intergenic 30.0%
TCTACTTTAATTGTCTTGCT+TGG - chr3_3:78722959-78722978 Msa0475490:intron 30.0%
AGAAATATTGATGTCTGGTA+AGG - chr3_3:78723111-78723130 Msa0475490:intron 30.0%
TGAACTATGCAGAGAAATTA+GGG + chr3_3:78723234-78723253 None:intergenic 30.0%
ATGAACTATGCAGAGAAATT+AGG + chr3_3:78723235-78723254 None:intergenic 30.0%
! GTCAAAGTATTTGTATGACT+TGG - chr3_3:78723475-78723494 Msa0475490:CDS 30.0%
AATGGAAAACTGTGATTAGT+TGG + chr3_3:78723584-78723603 None:intergenic 30.0%
CTAATCACAGATGAATTGAA+TGG - chr3_3:78723629-78723648 Msa0475490:intron 30.0%
GAAGAAATATTTGTAGCATG+TGG - chr3_3:78723651-78723670 Msa0475490:intron 30.0%
TTGTAATTTACTTCTTGACC+TGG - chr3_3:78723706-78723725 Msa0475490:intron 30.0%
!! ATGATTGAAGGTTTTGCTAT+TGG - chr3_3:78723739-78723758 Msa0475490:intron 30.0%
!!! TGATTGAAGGTTTTGCTATT+GGG - chr3_3:78723740-78723759 Msa0475490:intron 30.0%
CTGATAAAATTTCACATTGC+AGG - chr3_3:78723772-78723791 Msa0475490:intron 30.0%
TTATGCTTGCATTTGTGAAT+TGG - chr3_3:78723933-78723952 Msa0475490:intron 30.0%
TCTAGATCTACAATTTGAAC+AGG - chr3_3:78724158-78724177 Msa0475490:CDS 30.0%
CAACTCCATCAGTATAATAT+TGG - chr3_3:78724261-78724280 Msa0475490:intron 30.0%
ACTACCCAATATTATACTGA+TGG + chr3_3:78724269-78724288 None:intergenic 30.0%
AATTTAATTGAGCTTCCGAA+AGG - chr3_3:78724377-78724396 Msa0475490:CDS 30.0%
! AATTTTCAAATCTGTCGCTA+TGG - chr3_3:78724495-78724514 Msa0475490:intron 30.0%
!! AAAAAACAAAAGTATCCCGA+GGG + chr3_3:78724572-78724591 None:intergenic 30.0%
! ACTCTTTTATGTTAGTTACG+AGG - chr3_3:78724690-78724709 Msa0475490:intron 30.0%
AACTATGCTTTAGTGATTAG+TGG - chr3_3:78724904-78724923 Msa0475490:intron 30.0%
AGACCTATTATTCTTGCAAA+TGG - chr3_3:78724984-78725003 Msa0475490:intron 30.0%
TCTCCATTTGCAAGAATAAT+AGG + chr3_3:78724990-78725009 None:intergenic 30.0%
! ACTTTTACTATGACAAGACA+AGG + chr3_3:78725032-78725051 None:intergenic 30.0%
ATTTCTGTAATTGTTAACCG+TGG + chr3_3:78725078-78725097 None:intergenic 30.0%
TTGCACTAGAATCGAATATA+CGG - chr3_3:78725351-78725370 Msa0475490:intron 30.0%
CATAATTGAACTTGAAGACT+CGG + chr3_3:78725705-78725724 None:intergenic 30.0%
! AGTCTTCAAGTTCAATTATG+AGG - chr3_3:78725705-78725724 Msa0475490:intron 30.0%
!!! AAATCGGTGTTTTAAAAACC+GGG + chr3_3:78725792-78725811 None:intergenic 30.0%
TCAATTGTCGTATAGATAAG+AGG - chr3_3:78726103-78726122 Msa0475490:intron 30.0%
ATAGATAAGAGGTTTCATGT+TGG - chr3_3:78726114-78726133 Msa0475490:intron 30.0%
TAGATAAGAGGTTTCATGTT+GGG - chr3_3:78726115-78726134 Msa0475490:intron 30.0%
AGCAACTAAAATAAAGAGTG+AGG - chr3_3:78726232-78726251 Msa0475490:intron 30.0%
GCAACTAAAATAAAGAGTGA+GGG - chr3_3:78726233-78726252 Msa0475490:intron 30.0%
! ATCATCTCTTATTTCTTGCT+AGG - chr3_3:78726398-78726417 Msa0475490:intron 30.0%
! TTTAAAACTCACAGAGATTC+AGG + chr3_3:78726523-78726542 None:intergenic 30.0%
!! TAAACATATTGGTTCTTGTG+TGG - chr3_3:78726539-78726558 Msa0475490:intron 30.0%
!! AAACATATTGGTTCTTGTGT+GGG - chr3_3:78726540-78726559 Msa0475490:intron 30.0%
!!! TATGGTTTTGATGAAATGCT+TGG - chr3_3:78726758-78726777 Msa0475490:CDS 30.0%
!!! ATTTTGACTATAGGACATGT+TGG - chr3_3:78727181-78727200 Msa0475490:intron 30.0%
!!! AAGTTGTTTTTAGACAGGAA+AGG - chr3_3:78727566-78727585 Msa0475490:intron 30.0%
ATCTTAGATTCTTTAGTCAC+AGG - chr3_3:78727707-78727726 Msa0475490:intron 30.0%
! ACTGTGATACCTTATTTCAT+GGG + chr3_3:78727805-78727824 None:intergenic 30.0%
TGACAATCAAAACCATAAAC+AGG + chr3_3:78727971-78727990 None:intergenic 30.0%
AAATTTCCTGTAGTTCTTTG+TGG - chr3_3:78728027-78728046 Msa0475490:intron 30.0%
AAGGCTGTTCAAAAATAAAC+TGG + chr3_3:78728167-78728186 None:intergenic 30.0%
!!! TCAAGATGAAAAGGTGTTTT+AGG + chr3_3:78728233-78728252 None:intergenic 30.0%
TCATCTTGAATGAAATTTGC+AGG - chr3_3:78728244-78728263 Msa0475490:intron 30.0%
! AAAACTTTTATGGTGTGTTC+AGG - chr3_3:78728394-78728413 Msa0475490:intron 30.0%
! AAACTTTTATGGTGTGTTCA+GGG - chr3_3:78728395-78728414 Msa0475490:intron 30.0%
!!! TTTTCTCTGGTATTGACAAA+TGG - chr3_3:78728557-78728576 Msa0475490:intron 30.0%
!! TTTCTCTGGTATTGACAAAT+GGG - chr3_3:78728558-78728577 Msa0475490:intron 30.0%
GAAGAATGACAAATTACCAA+TGG + chr3_3:78728634-78728653 None:intergenic 30.0%
! TTTGAGTTTCTTCTTACATG+AGG - chr3_3:78728872-78728891 Msa0475490:intron 30.0%
ATGTCAATATCTGTATCTGA+AGG + chr3_3:78728962-78728981 None:intergenic 30.0%
GTACCAAGTAATTCATTATG+TGG - chr3_3:78729004-78729023 Msa0475490:intron 30.0%
CATGAAGAATATCCAACAAA+TGG + chr3_3:78729047-78729066 None:intergenic 30.0%
GGATATTCTTCATGTAGATA+TGG - chr3_3:78729053-78729072 Msa0475490:intron 30.0%
GCAATGATATTAGACAGTTA+TGG - chr3_3:78729091-78729110 Msa0475490:intron 30.0%
CAATATTGCAGAATAATGTC+GGG + chr3_3:78729195-78729214 None:intergenic 30.0%
TTATTCTGCAATATTGATGC+TGG - chr3_3:78729199-78729218 Msa0475490:CDS 30.0%
ATAATCTTCCTTGAGTGTTT+GGG - chr3_3:78729259-78729278 Msa0475490:CDS 30.0%
TGATGTATAATTGCTTGACT+TGG - chr3_3:78729297-78729316 Msa0475490:CDS 30.0%
CCCTAATTTGAATATCAGTT+TGG - chr3_3:78729397-78729416 Msa0475490:CDS 30.0%
ATTTCAACTCTCTTCTATGG+CGG - chr3_3:78721413-78721432 Msa0475490:three_prime_UTR 35.0%
!! TGATGATGGTGATGATACTA+TGG - chr3_3:78721509-78721528 Msa0475490:three_prime_UTR 35.0%
! GAACTCACTCTTTCTTTTGA+AGG - chr3_3:78721630-78721649 Msa0475490:three_prime_UTR 35.0%
CGTATACATACATGCAACAT+AGG + chr3_3:78721805-78721824 None:intergenic 35.0%
!!! ACGCGTAAGACATGTTTTTT+TGG - chr3_3:78722000-78722019 Msa0475490:intron 35.0%
CAATCACTTAATCACACTGA+GGG + chr3_3:78722148-78722167 None:intergenic 35.0%
TCAATCACTTAATCACACTG+AGG + chr3_3:78722149-78722168 None:intergenic 35.0%
!!! TCTTATTTTCGAAGAATCGG+TGG - chr3_3:78722183-78722202 Msa0475490:CDS 35.0%
ATGAAACAAAAGAAGGACGA+GGG + chr3_3:78722336-78722355 None:intergenic 35.0%
AATGAAACAAAAGAAGGACG+AGG + chr3_3:78722337-78722356 None:intergenic 35.0%
! AATCTCGATTTTACCTACCT+TGG - chr3_3:78722493-78722512 Msa0475490:intron 35.0%
! ATTGTCTTGCTTGGTAGTAT+AGG - chr3_3:78722968-78722987 Msa0475490:intron 35.0%
! TTGTCTTGCTTGGTAGTATA+GGG - chr3_3:78722969-78722988 Msa0475490:intron 35.0%
ATGGATCTCATTGTCATCAA+TGG - chr3_3:78722995-78723014 Msa0475490:intron 35.0%
AAGTTGACGTAAAAGCTCTA+TGG - chr3_3:78723043-78723062 Msa0475490:intron 35.0%
! CGTAAAAGCTCTATGGATTT+TGG - chr3_3:78723050-78723069 Msa0475490:intron 35.0%
! AAAAGCTCTATGGATTTTGG+TGG - chr3_3:78723053-78723072 Msa0475490:intron 35.0%
TATGAATAGGTGAATAGCTC+AGG - chr3_3:78723145-78723164 Msa0475490:intron 35.0%
!!! GATTGAAGGTTTTGCTATTG+GGG - chr3_3:78723741-78723760 Msa0475490:intron 35.0%
!!! CAAGCTGTTTTGCTGTTTTT+GGG - chr3_3:78723797-78723816 Msa0475490:intron 35.0%
GCTATTCTTCGTGAAAGATT+TGG + chr3_3:78723999-78724018 None:intergenic 35.0%
! ATCTTTCCTTGCGTTTTTCA+CGG + chr3_3:78724037-78724056 None:intergenic 35.0%
!!! CATCACTTTTTGGGGTAATA+GGG + chr3_3:78724131-78724150 None:intergenic 35.0%
!!! TCATCACTTTTTGGGGTAAT+AGG + chr3_3:78724132-78724151 None:intergenic 35.0%
AACAAACTACATTCGTTCAC+TGG + chr3_3:78724522-78724541 None:intergenic 35.0%
!! CAAAAAACAAAAGTATCCCG+AGG + chr3_3:78724573-78724592 None:intergenic 35.0%
! GCAATTTGCTTTAACCCATA+AGG - chr3_3:78724842-78724861 Msa0475490:intron 35.0%
!!! AAGGGTTTTTGAGACTTAAC+TGG - chr3_3:78724959-78724978 Msa0475490:intron 35.0%
!!! TTGTTAGTTTTGACTCTCCA+CGG - chr3_3:78725058-78725077 Msa0475490:intron 35.0%
GAATTTGACCTGTCAAAGTT+TGG - chr3_3:78725225-78725244 Msa0475490:intron 35.0%
GAGTTTAACCAAACTTTGAC+AGG + chr3_3:78725236-78725255 None:intergenic 35.0%
!! ATTGACTTGGTAAGGGTATT+TGG + chr3_3:78725763-78725782 None:intergenic 35.0%
! ATCCTTTTTGTAAGACTGCT+TGG + chr3_3:78725968-78725987 None:intergenic 35.0%
TATTTCTTGCTAGGATGCAT+CGG - chr3_3:78726407-78726426 Msa0475490:intron 35.0%
!! GGTCATTTTGCTAACAAGTA+TGG - chr3_3:78726740-78726759 Msa0475490:intron 35.0%
! CACAATTATTTTCCAGTAGC+TGG - chr3_3:78726814-78726833 Msa0475490:CDS 35.0%
!!! AGACTGGGTGTTGTTTTTTT+GGG + chr3_3:78726878-78726897 None:intergenic 35.0%
!!! AAGACTGGGTGTTGTTTTTT+TGG + chr3_3:78726879-78726898 None:intergenic 35.0%
AAAAACAACACCCAGTCTTT+CGG - chr3_3:78726880-78726899 Msa0475490:intron 35.0%
ATTGTTTACAGCTGAGACAA+TGG - chr3_3:78727088-78727107 Msa0475490:intron 35.0%
AGAATGCAACAAACAAGTAC+AGG + chr3_3:78727248-78727267 None:intergenic 35.0%
TCTGCTTCTTAACTCTGATA+GGG - chr3_3:78727317-78727336 Msa0475490:intron 35.0%
ATCACATGTCCCATGAAATA+AGG - chr3_3:78727793-78727812 Msa0475490:intron 35.0%
! CACTGTGATACCTTATTTCA+TGG + chr3_3:78727806-78727825 None:intergenic 35.0%
! GAAATAAGGTATCACAGTGA+AGG - chr3_3:78727807-78727826 Msa0475490:intron 35.0%
!! TTTTGATTGTCACGAAGAGA+TGG - chr3_3:78727979-78727998 Msa0475490:intron 35.0%
AATCTTCCACAAAGAACTAC+AGG + chr3_3:78728036-78728055 None:intergenic 35.0%
!!! ATGAAAAGGTGTTTTAGGAC+TGG + chr3_3:78728228-78728247 None:intergenic 35.0%
TGACAAATGGGTATTTGTTC+AGG - chr3_3:78728570-78728589 Msa0475490:intron 35.0%
TTTGCCGATGAAACTTGAAA+TGG - chr3_3:78728782-78728801 Msa0475490:intron 35.0%
!! AGCTCCATTTCAAGTTTCAT+CGG + chr3_3:78728789-78728808 None:intergenic 35.0%
GATACAGATATTGACATTCC+TGG - chr3_3:78728965-78728984 Msa0475490:intron 35.0%
TCCTGGAAACTTTGATTAGA+AGG - chr3_3:78728982-78729001 Msa0475490:intron 35.0%
ACCTTCTAATCAAAGTTTCC+AGG + chr3_3:78728986-78729005 None:intergenic 35.0%
CACCCACATAATGAATTACT+TGG + chr3_3:78729010-78729029 None:intergenic 35.0%
TTAGACAACAGTCCATTTGT+TGG - chr3_3:78729032-78729051 Msa0475490:intron 35.0%
TTAGACAGTTATGGGAAAGT+AGG - chr3_3:78729100-78729119 Msa0475490:intron 35.0%
TATGTAACAGCGAAATGAAG+TGG - chr3_3:78729132-78729151 Msa0475490:intron 35.0%
ATGAAGTGGTAATCCTATCA+AGG - chr3_3:78729146-78729165 Msa0475490:intron 35.0%
TGAAGTGGTAATCCTATCAA+GGG - chr3_3:78729147-78729166 Msa0475490:intron 35.0%
GATAATCTTCCTTGAGTGTT+TGG - chr3_3:78729258-78729277 Msa0475490:CDS 35.0%
! TCTCTAAATTTCAGGTAGCA+AGG + chr3_3:78729344-78729363 None:intergenic 35.0%
TCAATAGCTGGAATTGTTGC+AGG + chr3_3:78721462-78721481 None:intergenic 40.0%
GATGAGGACTATACTGATGA+TGG - chr3_3:78721495-78721514 Msa0475490:three_prime_UTR 40.0%
TACCTTCTGATGTGTGACAT+CGG + chr3_3:78721673-78721692 None:intergenic 40.0%
! CGATTTTACCTACCTTGGTT+AGG - chr3_3:78722498-78722517 Msa0475490:intron 40.0%
! GTGTAATAATGGGACTGTTG+TGG - chr3_3:78722591-78722610 Msa0475490:intron 40.0%
GTCCATGTCCATATCATATC+TGG - chr3_3:78722905-78722924 Msa0475490:intron 40.0%
CACCAGATATGATATGGACA+TGG + chr3_3:78722910-78722929 None:intergenic 40.0%
! GCTTGGTAGTATAGGGATTA+TGG - chr3_3:78722976-78722995 Msa0475490:intron 40.0%
CATTGTCATCAATGGCTGTT+TGG - chr3_3:78723003-78723022 Msa0475490:intron 40.0%
GGCTTACGAACGATATGAAT+AGG - chr3_3:78723132-78723151 Msa0475490:intron 40.0%
ATACTTTGACCGTTGTGTCA+AGG + chr3_3:78723465-78723484 None:intergenic 40.0%
GAAGTCACAGATTGAAGTCA+TGG - chr3_3:78723497-78723516 Msa0475490:CDS 40.0%
CCTTACTTTGCAATTGCAAG+AGG + chr3_3:78723530-78723549 None:intergenic 40.0%
CCTCTTGCAATTGCAAAGTA+AGG - chr3_3:78723527-78723546 Msa0475490:intron 40.0%
TTACTTCTTGACCTGGCAAA+AGG - chr3_3:78723713-78723732 Msa0475490:intron 40.0%
! TCAATCATTGTCCTTTTGCC+AGG + chr3_3:78723727-78723746 None:intergenic 40.0%
GGCAAAAGGACAATGATTGA+AGG - chr3_3:78723727-78723746 Msa0475490:intron 40.0%
!!! GCAAGCTGTTTTGCTGTTTT+TGG - chr3_3:78723796-78723815 Msa0475490:intron 40.0%
! TGCCATTTGATCAGAGTAAC+AGG - chr3_3:78723858-78723877 Msa0475490:intron 40.0%
GCCATTTGATCAGAGTAACA+GGG - chr3_3:78723859-78723878 Msa0475490:intron 40.0%
ACCCTGTTACTCTGATCAAA+TGG + chr3_3:78723863-78723882 None:intergenic 40.0%
! AATTGGTTCCTGCAATCTCT+AGG - chr3_3:78723950-78723969 Msa0475490:intron 40.0%
! ATTGGTTCCTGCAATCTCTA+GGG - chr3_3:78723951-78723970 Msa0475490:intron 40.0%
TAGATACTCCGTGAGAAAAG+AGG - chr3_3:78724073-78724092 Msa0475490:intron 40.0%
TACTGATGGAGTTGACATCT+TGG + chr3_3:78724255-78724274 None:intergenic 40.0%
ACCTTGTTGGCCCAAAATTA+TGG - chr3_3:78724443-78724462 Msa0475490:intron 40.0%
! ACCATAATTTTGGGCCAACA+AGG + chr3_3:78724447-78724466 None:intergenic 40.0%
! AAAATCGCACTGGTAAAACC+AGG - chr3_3:78725158-78725177 Msa0475490:intron 40.0%
GCCTAATATTGTGATTGGAC+CGG + chr3_3:78725198-78725217 None:intergenic 40.0%
GAGCAGCCTAATATTGTGAT+TGG + chr3_3:78725203-78725222 None:intergenic 40.0%
TGATAACATCAACAAGCAGC+AGG + chr3_3:78725413-78725432 None:intergenic 40.0%
!! TTTTTAGCGACAAAGTCAGC+TGG - chr3_3:78725627-78725646 Msa0475490:intron 40.0%
AGGTTAATCCAGTGATCAAG+TGG - chr3_3:78725725-78725744 Msa0475490:intron 40.0%
!! TGGTAAGGGTATTTGGTCAT+TGG + chr3_3:78725756-78725775 None:intergenic 40.0%
!! GTTGGTGATTGACTTGGTAA+GGG + chr3_3:78725770-78725789 None:intergenic 40.0%
ACCTGTGGTAAGACTTGATT+GGG + chr3_3:78725861-78725880 None:intergenic 40.0%
TATATAGCCAATCTCACCTG+TGG + chr3_3:78725876-78725895 None:intergenic 40.0%
GTCCAAGCAGTCTTACAAAA+AGG - chr3_3:78725963-78725982 Msa0475490:intron 40.0%
ATTTCTTGCTAGGATGCATC+GGG - chr3_3:78726408-78726427 Msa0475490:intron 40.0%
AATTCCAACTAGAGGAACCA+GGG + chr3_3:78726465-78726484 None:intergenic 40.0%
TCTAGTTGGAATTCAGCACA+GGG - chr3_3:78726472-78726491 Msa0475490:intron 40.0%
ACTCACAGAGATTCAGGATT+AGG + chr3_3:78726517-78726536 None:intergenic 40.0%
ACAATGTTGACATCTACGTC+TGG + chr3_3:78726624-78726643 None:intergenic 40.0%
AGACGTAGATGTCAACATTG+TGG - chr3_3:78726623-78726642 Msa0475490:intron 40.0%
CATGCATTGCACAAAGTTCT+TGG + chr3_3:78726695-78726714 None:intergenic 40.0%
AGAACTTTGTGCAATGCATG+CGG - chr3_3:78726695-78726714 Msa0475490:intron 40.0%
AGCAAAATGACCAACCTTGT+TGG + chr3_3:78726732-78726751 None:intergenic 40.0%
! TATTTTCCAGTAGCTGGAGT+TGG - chr3_3:78726820-78726839 Msa0475490:CDS 40.0%
GATGACAAATCCGAAAGACT+GGG + chr3_3:78726893-78726912 None:intergenic 40.0%
AGATGACAAATCCGAAAGAC+TGG + chr3_3:78726894-78726913 None:intergenic 40.0%
ACAACATCTAATCCACCACT+GGG + chr3_3:78727161-78727180 None:intergenic 40.0%
TACAACATCTAATCCACCAC+TGG + chr3_3:78727162-78727181 None:intergenic 40.0%
GTCTGCTTCTTAACTCTGAT+AGG - chr3_3:78727316-78727335 Msa0475490:intron 40.0%
CTGCTTCTTAACTCTGATAG+GGG - chr3_3:78727318-78727337 Msa0475490:intron 40.0%
ACACTCAGAGATCTCAGTAA+GGG - chr3_3:78727341-78727360 Msa0475490:intron 40.0%
AGCCAATTGCAAATGCTAAG+TGG - chr3_3:78727448-78727467 Msa0475490:intron 40.0%
GCCAATTGCAAATGCTAAGT+GGG - chr3_3:78727449-78727468 Msa0475490:intron 40.0%
TCCCACTTAGCATTTGCAAT+TGG + chr3_3:78727453-78727472 None:intergenic 40.0%
TTTGAACAGCCTTACCTTTG+TGG - chr3_3:78728174-78728193 Msa0475490:intron 40.0%
TGAAAGAACTTGAGCCACAA+AGG + chr3_3:78728191-78728210 None:intergenic 40.0%
TCAAGCCAACTGTTCTTGAA+GGG - chr3_3:78728282-78728301 Msa0475490:intron 40.0%
AATTCCCCTTCAAGAACAGT+TGG + chr3_3:78728290-78728309 None:intergenic 40.0%
AATGATCATGCATCAAACCC+TGG - chr3_3:78728461-78728480 Msa0475490:intron 40.0%
!! CCAATGGCAGTGTTTTTGTT+AGG + chr3_3:78728618-78728637 None:intergenic 40.0%
CCTAACAAAAACACTGCCAT+TGG - chr3_3:78728615-78728634 Msa0475490:intron 40.0%
! TTCGGAAAATGATGATGAGC+AGG - chr3_3:78728651-78728670 Msa0475490:intron 40.0%
TTCATCGGCAAAGTTCAAGT+GGG + chr3_3:78728774-78728793 None:intergenic 40.0%
TTTCATCGGCAAAGTTCAAG+TGG + chr3_3:78728775-78728794 None:intergenic 40.0%
TCTTGCGTTTACAAGTGTAC+TGG + chr3_3:78728813-78728832 None:intergenic 40.0%
ATGAGGCTTATATGACCTAC+AGG - chr3_3:78728889-78728908 Msa0475490:intron 40.0%
CTTTCTAATCCTTCAGATGC+AGG - chr3_3:78728926-78728945 Msa0475490:intron 40.0%
TTAGACATTCCTGCATCTGA+AGG + chr3_3:78728938-78728957 None:intergenic 40.0%
ATTGTTGCAGGATCCTCAGA+TGG + chr3_3:78721450-78721469 None:intergenic 45.0%
! GGTAATTCGGTGAACGTTGA+AGG - chr3_3:78721555-78721574 Msa0475490:three_prime_UTR 45.0%
!! CACTCTTTCTTTTGAAGGCG+AGG - chr3_3:78721635-78721654 Msa0475490:three_prime_UTR 45.0%
ACCTTCTGATGTGTGACATC+GGG + chr3_3:78721672-78721691 None:intergenic 45.0%
!! TAATCGATGGGTATCGGGTA+CGG - chr3_3:78721957-78721976 Msa0475490:intron 45.0%
TTAGATTGCTGTCGGGATCA+TGG - chr3_3:78722068-78722087 Msa0475490:intron 45.0%
ATGGGACTGTTGTGGTGTAA+AGG - chr3_3:78722599-78722618 Msa0475490:intron 45.0%
TCTTGGGAACCTTGACACAA+CGG - chr3_3:78723453-78723472 Msa0475490:intron 45.0%
!!! GCTGTTTTGCTGTTTTTGGG+AGG - chr3_3:78723800-78723819 Msa0475490:intron 45.0%
!!! TTGCTGTTTTTGGGAGGAAG+TGG - chr3_3:78723806-78723825 Msa0475490:intron 45.0%
TCAAATGGCAGTTCAGCTGT+GGG + chr3_3:78723848-78723867 None:intergenic 45.0%
ATCAAATGGCAGTTCAGCTG+TGG + chr3_3:78723849-78723868 None:intergenic 45.0%
TTCACGAAGAATAGCCTCCT+TGG - chr3_3:78724004-78724023 Msa0475490:intron 45.0%
! TTTTTCACGGTACCTGACCA+AGG + chr3_3:78724024-78724043 None:intergenic 45.0%
ATACTCCGTGAGAAAAGAGG+TGG - chr3_3:78724076-78724095 Msa0475490:intron 45.0%
! TTCTGCCACCTCTTTTCTCA+CGG + chr3_3:78724084-78724103 None:intergenic 45.0%
TGAGAAAAGAGGTGGCAGAA+AGG - chr3_3:78724084-78724103 Msa0475490:intron 45.0%
TATCCCGAGGGAATCAAACA+CGG + chr3_3:78724560-78724579 None:intergenic 45.0%
AAGCAAATTGCGTGTCCAAG+CGG + chr3_3:78724833-78724852 None:intergenic 45.0%
GCCGGTCCAATCACAATATT+AGG - chr3_3:78725194-78725213 Msa0475490:intron 45.0%
AGTGGCAGAAAACTGCATTG+TGG + chr3_3:78725387-78725406 None:intergenic 45.0%
! CAAAGTCAGCTGGCTTAATC+CGG - chr3_3:78725637-78725656 Msa0475490:intron 45.0%
TGGTTGAACCACTTGATCAC+TGG + chr3_3:78725736-78725755 None:intergenic 45.0%
!! GGTTGGTGATTGACTTGGTA+AGG + chr3_3:78725771-78725790 None:intergenic 45.0%
TACCAAGTCAATCACCAACC+CGG - chr3_3:78725771-78725790 Msa0475490:intron 45.0%
!!! CGGTGTTTTAAAAACCGGGT+TGG + chr3_3:78725788-78725807 None:intergenic 45.0%
ACCCAATCAAGTCTTACCAC+AGG - chr3_3:78725857-78725876 Msa0475490:intron 45.0%
CACCTGTGGTAAGACTTGAT+TGG + chr3_3:78725862-78725881 None:intergenic 45.0%
AGTCTTACCACAGGTGAGAT+TGG - chr3_3:78725866-78725885 Msa0475490:intron 45.0%
GAATTCCAACTAGAGGAACC+AGG + chr3_3:78726466-78726485 None:intergenic 45.0%
CTGTGCTGAATTCCAACTAG+AGG + chr3_3:78726473-78726492 None:intergenic 45.0%
CTCTAGTTGGAATTCAGCAC+AGG - chr3_3:78726471-78726490 Msa0475490:intron 45.0%
GGGATTAACTATAAAGCCCC+AGG + chr3_3:78727132-78727151 None:intergenic 45.0%
TAATCCACCACTGGGTGTAA+GGG + chr3_3:78727153-78727172 None:intergenic 45.0%
GACACTCAGAGATCTCAGTA+AGG - chr3_3:78727340-78727359 Msa0475490:intron 45.0%
GAACTTGAGCCACAAAGGTA+AGG + chr3_3:78728186-78728205 None:intergenic 45.0%
! TTGGCTTGACATCAACAGGA+GGG + chr3_3:78728271-78728290 None:intergenic 45.0%
!! ACAGTTGGCTTGACATCAAC+AGG + chr3_3:78728275-78728294 None:intergenic 45.0%
GTCAAGCCAACTGTTCTTGA+AGG - chr3_3:78728281-78728300 Msa0475490:intron 45.0%
CAAGCCAACTGTTCTTGAAG+GGG - chr3_3:78728283-78728302 Msa0475490:intron 45.0%
GAAGAACCTTCCAAGACTGT+TGG - chr3_3:78728425-78728444 Msa0475490:intron 45.0%
CTACAACTACCTCATCACCA+GGG + chr3_3:78728481-78728500 None:intergenic 45.0%
ACTACAACTACCTCATCACC+AGG + chr3_3:78728482-78728501 None:intergenic 45.0%
! GGGTTCAGACATCTTTTCTC+TGG - chr3_3:78728544-78728563 Msa0475490:intron 45.0%
TCATCGGCAAAGTTCAAGTG+GGG + chr3_3:78728773-78728792 None:intergenic 45.0%
AGGATTAGAAAGCTCGACCA+CGG + chr3_3:78728918-78728937 None:intergenic 45.0%
AGTGGTAATCCTATCAAGGG+TGG - chr3_3:78729150-78729169 Msa0475490:intron 45.0%
AACACGATCCCAAACACTCA+AGG + chr3_3:78729270-78729289 None:intergenic 45.0%
!! ACTTTGGTGATGCCATCCAA+AGG - chr3_3:78729368-78729387 Msa0475490:CDS 45.0%
CAAATTAGGGGTCCATCCTT+TGG + chr3_3:78729387-78729406 None:intergenic 45.0%
!! TTGGTGGTGTGCTGAAGTTT+AGG - chr3_3:78729416-78729435 Msa0475490:exon 45.0%
!! GTATATTTATAAATAAAAAA+AGG + chr3_3:78725529-78725548 None:intergenic 5.0%
!!! AAAAAATTGTTTTAATATTA+AGG + chr3_3:78728117-78728136 None:intergenic 5.0%
! GAGTCTCGTTCTGAGTTCCT+TGG - chr3_3:78721357-78721376 Msa0475490:three_prime_UTR 50.0%
GGAACAACCTCTTCCATCTG+AGG - chr3_3:78721434-78721453 Msa0475490:three_prime_UTR 50.0%
TCGTCGTCGTCATCAATAGC+TGG + chr3_3:78721474-78721493 None:intergenic 50.0%
CCTTCTGATGTGTGACATCG+GGG + chr3_3:78721671-78721690 None:intergenic 50.0%
AAGTACCCGCGAGTAATCGA+TGG - chr3_3:78721944-78721963 Msa0475490:intron 50.0%
AGTACCCGCGAGTAATCGAT+GGG - chr3_3:78721945-78721964 Msa0475490:intron 50.0%
! GATACCCATCGATTACTCGC+GGG + chr3_3:78721952-78721971 None:intergenic 50.0%
! CGATACCCATCGATTACTCG+CGG + chr3_3:78721953-78721972 None:intergenic 50.0%
CGCGAGTAATCGATGGGTAT+CGG - chr3_3:78721951-78721970 Msa0475490:intron 50.0%
GCGAGTAATCGATGGGTATC+GGG - chr3_3:78721952-78721971 Msa0475490:intron 50.0%
!! AATCGATGGGTATCGGGTAC+GGG - chr3_3:78721958-78721977 Msa0475490:intron 50.0%
!! TTCCTGCAATCTCTAGGGCT+TGG - chr3_3:78723956-78723975 Msa0475490:intron 50.0%
!! TCCTGCAATCTCTAGGGCTT+GGG - chr3_3:78723957-78723976 Msa0475490:intron 50.0%
GAAGAATAGCCTCCTTGGTC+AGG - chr3_3:78724009-78724028 Msa0475490:intron 50.0%
! CAGGTACCGTGAAAAACGCA+AGG - chr3_3:78724028-78724047 Msa0475490:intron 50.0%
AGCTTCCGAAAGGAAGTTCG+TGG - chr3_3:78724387-78724406 Msa0475490:CDS 50.0%
GCTTCCGAAAGGAAGTTCGT+GGG - chr3_3:78724388-78724407 Msa0475490:CDS 50.0%
CTTCCGAAAGGAAGTTCGTG+GGG - chr3_3:78724389-78724408 Msa0475490:CDS 50.0%
! TTTTGGGCCAACAAGGTAGC+AGG + chr3_3:78724440-78724459 None:intergenic 50.0%
ATCCCGAGGGAATCAAACAC+GGG + chr3_3:78724559-78724578 None:intergenic 50.0%
AGCGGGCACAATCAAATTGG+AGG + chr3_3:78724815-78724834 None:intergenic 50.0%
CCAAGCGGGCACAATCAAAT+TGG + chr3_3:78724818-78724837 None:intergenic 50.0%
CCAATTTGATTGTGCCCGCT+TGG - chr3_3:78724815-78724834 Msa0475490:intron 50.0%
AGCAAATTGCGTGTCCAAGC+GGG + chr3_3:78724832-78724851 None:intergenic 50.0%
! GCACTGGTAAAACCAGGAAC+CGG - chr3_3:78725164-78725183 Msa0475490:intron 50.0%
CTCATCAAACTCGCGTAACC+CGG - chr3_3:78725253-78725272 Msa0475490:intron 50.0%
TATGACCACACCAGTTACGC+CGG + chr3_3:78725275-78725294 None:intergenic 50.0%
!! AACCGGGTTGGTGATTGACT+TGG + chr3_3:78725776-78725795 None:intergenic 50.0%
TGCTAGGATGCATCGGGAAA+AGG - chr3_3:78726414-78726433 Msa0475490:intron 50.0%
GCTAGGATGCATCGGGAAAA+GGG - chr3_3:78726415-78726434 Msa0475490:intron 50.0%
CTAGGATGCATCGGGAAAAG+GGG - chr3_3:78726416-78726435 Msa0475490:intron 50.0%
GAACCAGGGCTTTGCTTCAA+GGG + chr3_3:78726451-78726470 None:intergenic 50.0%
AAAGCCCTGGTTCCTCTAGT+TGG - chr3_3:78726458-78726477 Msa0475490:intron 50.0%
AATACTCCTGCAATGCGTCG+CGG - chr3_3:78726659-78726678 Msa0475490:intron 50.0%
CACAAAGTTCTTGGTCCAGC+TGG + chr3_3:78726686-78726705 None:intergenic 50.0%
GTTAATCCCCTTACACCCAG+TGG - chr3_3:78727143-78727162 Msa0475490:intron 50.0%
AATCCACCACTGGGTGTAAG+GGG + chr3_3:78727152-78727171 None:intergenic 50.0%
CTAATCCACCACTGGGTGTA+AGG + chr3_3:78727154-78727173 None:intergenic 50.0%
CTCAGAGATCTCAGTAAGGG+TGG - chr3_3:78727344-78727363 Msa0475490:intron 50.0%
TCCTGTTGAGCAAAGTCGTC+TGG - chr3_3:78727376-78727395 Msa0475490:intron 50.0%
ACCAGACGACTTTGCTCAAC+AGG + chr3_3:78727380-78727399 None:intergenic 50.0%
!! GTTGGCTTGACATCAACAGG+AGG + chr3_3:78728272-78728291 None:intergenic 50.0%
ACCTTCCAAGACTGTTGGTG+CGG - chr3_3:78728430-78728449 Msa0475490:intron 50.0%
! TGCATCAAACCCTGGTGATG+AGG - chr3_3:78728469-78728488 Msa0475490:intron 50.0%
CAAGTGGGGCTACTTGAACT+CGG + chr3_3:78728759-78728778 None:intergenic 50.0%
ATATGACCTACAGGAACCCG+TGG - chr3_3:78728898-78728917 Msa0475490:intron 50.0%
GGATTAGAAAGCTCGACCAC+GGG + chr3_3:78728917-78728936 None:intergenic 50.0%
AGAGCTTCTCCACCCTTGAT+AGG + chr3_3:78729162-78729181 None:intergenic 50.0%
! TGGTGATGCCATCCAAAGGA+TGG - chr3_3:78729372-78729391 Msa0475490:CDS 50.0%
TTAGGGGTCCATCCTTTGGA+TGG + chr3_3:78729383-78729402 None:intergenic 50.0%
GAAGTTTAGGCTTGTGCTGC+TGG - chr3_3:78729429-78729448 Msa0475490:five_prime_UTR 50.0%
! TTGTGCTGCTGGACTCTTAG+TGG - chr3_3:78729440-78729459 Msa0475490:five_prime_UTR 50.0%
! TGTGCTGCTGGACTCTTAGT+GGG - chr3_3:78729441-78729460 Msa0475490:five_prime_UTR 50.0%
!! GGACTCTTAGTGGGAGCATT+TGG - chr3_3:78729450-78729469 Msa0475490:five_prime_UTR 50.0%
GCAGGATCCTCAGATGGAAG+AGG + chr3_3:78721444-78721463 None:intergenic 55.0%
! TGATGACGACGACGACGATG+AGG - chr3_3:78721479-78721498 Msa0475490:three_prime_UTR 55.0%
GCTGCAGCTGCAACACGTAT+TGG - chr3_3:78721606-78721625 Msa0475490:three_prime_UTR 55.0%
CCCCGATGTCACACATCAGA+AGG - chr3_3:78721668-78721687 Msa0475490:three_prime_UTR 55.0%
!! ATGGGTATCGGGTACGGGTA+CGG - chr3_3:78721963-78721982 Msa0475490:intron 55.0%
GATTGCTGTCGGGATCATGG+TGG - chr3_3:78722071-78722090 Msa0475490:intron 55.0%
!! TGCAATCTCTAGGGCTTGGG+CGG - chr3_3:78723960-78723979 Msa0475490:intron 55.0%
TTCACGGTACCTGACCAAGG+AGG + chr3_3:78724021-78724040 None:intergenic 55.0%
CGTCCCCACGAACTTCCTTT+CGG + chr3_3:78724395-78724414 None:intergenic 55.0%
CTGACCACCTGCTACCTTGT+TGG - chr3_3:78724430-78724449 Msa0475490:intron 55.0%
GCTCCCGTGTTTGATTCCCT+CGG - chr3_3:78724553-78724572 Msa0475490:intron 55.0%
CTCCCGTGTTTGATTCCCTC+GGG - chr3_3:78724554-78724573 Msa0475490:intron 55.0%
AAAACCAGGAACCGGACGCA+TGG - chr3_3:78725172-78725191 Msa0475490:intron 55.0%
ATGACCACACCAGTTACGCC+GGG + chr3_3:78725274-78725293 None:intergenic 55.0%
TCAACAAGCAGCAGGCTCAG+TGG + chr3_3:78725405-78725424 None:intergenic 55.0%
! GAAGACTCGGTTGCATCACC+CGG + chr3_3:78725692-78725711 None:intergenic 55.0%
GGAACCAGGGCTTTGCTTCA+AGG + chr3_3:78726452-78726471 None:intergenic 55.0%
TGGAATTCAGCACAGGGTGC+TGG - chr3_3:78726478-78726497 Msa0475490:intron 55.0%
CAATGCATGCGGCCTCATGT+GGG - chr3_3:78726706-78726725 Msa0475490:intron 55.0%
CAACCTTGTTGGCCCACATG+AGG + chr3_3:78726721-78726740 None:intergenic 55.0%
CTCATGTGGGCCAACAAGGT+TGG - chr3_3:78726719-78726738 Msa0475490:intron 55.0%
ACAGCTGAGACAATGGTCCC+TGG - chr3_3:78727095-78727114 Msa0475490:intron 55.0%
TGAGACAATGGTCCCTGGCA+TGG - chr3_3:78727100-78727119 Msa0475490:intron 55.0%
GAGACAATGGTCCCTGGCAT+GGG - chr3_3:78727101-78727120 Msa0475490:intron 55.0%
AATCCCCTTACACCCAGTGG+TGG - chr3_3:78727146-78727165 Msa0475490:intron 55.0%
TCCGCACCAACAGTCTTGGA+AGG + chr3_3:78728434-78728453 None:intergenic 55.0%
TCCAAGACTGTTGGTGCGGA+AGG - chr3_3:78728434-78728453 Msa0475490:intron 55.0%
ACCTTCCGCACCAACAGTCT+TGG + chr3_3:78728438-78728457 None:intergenic 55.0%
TGGGGCTACTTGAACTCGGA+TGG + chr3_3:78728755-78728774 None:intergenic 55.0%
GCAGCTGCAGTTGCAGTTGC+AGG + chr3_3:78721591-78721610 None:intergenic 60.0%
!! TGGGTATCGGGTACGGGTAC+GGG - chr3_3:78721964-78721983 Msa0475490:intron 60.0%
AGTTCAGCTGTGGGCATGCC+TGG + chr3_3:78723839-78723858 None:intergenic 60.0%
GCCCAAGCCCTAGAGATTGC+AGG + chr3_3:78723961-78723980 None:intergenic 60.0%
AAGTTCGTGGGGACGCACAC+AGG - chr3_3:78724400-78724419 Msa0475490:CDS 60.0%
AGTTCGTGGGGACGCACACA+GGG - chr3_3:78724401-78724420 Msa0475490:CDS 60.0%
TGGGCCAACAAGGTAGCAGG+TGG + chr3_3:78724437-78724456 None:intergenic 60.0%
GTAACCCGGCGTAACTGGTG+TGG - chr3_3:78725267-78725286 Msa0475490:intron 60.0%
GCACCCTTGAAGCAAAGCCC+TGG - chr3_3:78726445-78726464 Msa0475490:intron 60.0%
!! GCACAGGGTGCTGGTCAAGA+TGG - chr3_3:78726487-78726506 Msa0475490:intron 60.0%
GCAATGCATGCGGCCTCATG+TGG - chr3_3:78726705-78726724 Msa0475490:intron 60.0%
GTGCAGCCAACTCCAGCTAC+TGG + chr3_3:78726829-78726848 None:intergenic 60.0%
GATTGGACCGGCCATGCGTC+CGG + chr3_3:78725186-78725205 None:intergenic 65.0%
CTCGCGTAACCCGGCGTAAC+TGG - chr3_3:78725262-78725281 Msa0475490:intron 65.0%
CGGCCTCATGTGGGCCAACA+AGG - chr3_3:78726715-78726734 Msa0475490:intron 65.0%
GCTCGACCACGGGTTCCTGT+AGG + chr3_3:78728907-78728926 None:intergenic 65.0%
GGAGGAAGTGGTGCGCAGCC+AGG - chr3_3:78723818-78723837 Msa0475490:intron 70.0%
CCAGGAACCGGACGCATGGC+CGG - chr3_3:78725176-78725195 Msa0475490:intron 70.0%
GCTGGTCCGCGACGCATTGC+AGG + chr3_3:78726668-78726687 None:intergenic 70.0%
GCAATGCGTCGCGGACCAGC+TGG - chr3_3:78726668-78726687 Msa0475490:intron 70.0%
TCCCTGGCATGGGAGCTGCC+TGG - chr3_3:78727111-78727130 Msa0475490:intron 70.0%
CCCAGGCAGCTCCCATGCCA+GGG + chr3_3:78727115-78727134 None:intergenic 70.0%
CCCTGGCATGGGAGCTGCCT+GGG - chr3_3:78727112-78727131 Msa0475490:intron 70.0%
CCTGGCATGGGAGCTGCCTG+GGG - chr3_3:78727113-78727132 Msa0475490:intron 70.0%
CCGGCCATGCGTCCGGTTCC+TGG + chr3_3:78725179-78725198 None:intergenic 75.0%
CCCCAGGCAGCTCCCATGCC+AGG + chr3_3:78727116-78727135 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78721269 78729586 78721269 ID=Msa0475490;Name=Msa0475490
chr3_3 mRNA 78721269 78729586 78721269 ID=Msa0475490-mRNA-1;Parent=Msa0475490;Name=Msa0475490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=160|1|1|1|0.88|0.9|10|586|358
chr3_3 exon 78721269 78721944 78721269 ID=Msa0475490-mRNA-1:exon:21278;Parent=Msa0475490-mRNA-1
chr3_3 exon 78722183 78722263 78722183 ID=Msa0475490-mRNA-1:exon:21277;Parent=Msa0475490-mRNA-1
chr3_3 exon 78722365 78722439 78722365 ID=Msa0475490-mRNA-1:exon:21276;Parent=Msa0475490-mRNA-1
chr3_3 exon 78722524 78722589 78722524 ID=Msa0475490-mRNA-1:exon:21275;Parent=Msa0475490-mRNA-1
chr3_3 exon 78723458 78723517 78723458 ID=Msa0475490-mRNA-1:exon:21274;Parent=Msa0475490-mRNA-1
chr3_3 exon 78724119 78724230 78724119 ID=Msa0475490-mRNA-1:exon:21273;Parent=Msa0475490-mRNA-1
chr3_3 exon 78724325 78724435 78724325 ID=Msa0475490-mRNA-1:exon:21272;Parent=Msa0475490-mRNA-1
chr3_3 exon 78726750 78726883 78726750 ID=Msa0475490-mRNA-1:exon:21271;Parent=Msa0475490-mRNA-1
chr3_3 exon 78726975 78727061 78726975 ID=Msa0475490-mRNA-1:exon:21270;Parent=Msa0475490-mRNA-1
chr3_3 exon 78729166 78729586 78729166 ID=Msa0475490-mRNA-1:exon:21269;Parent=Msa0475490-mRNA-1
chr3_3 five_prime_UTR 78729427 78729586 78729427 ID=Msa0475490-mRNA-1:five_prime_utr;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78729166 78729426 78729166 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78726975 78727061 78726975 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78726750 78726883 78726750 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78724325 78724435 78724325 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78724119 78724230 78724119 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78723458 78723517 78723458 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78722524 78722589 78722524 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78722365 78722439 78722365 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78722183 78722263 78722183 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 CDS 78721855 78721944 78721855 ID=Msa0475490-mRNA-1:cds;Parent=Msa0475490-mRNA-1
chr3_3 three_prime_UTR 78721269 78721854 78721269 ID=Msa0475490-mRNA-1:three_prime_utr;Parent=Msa0475490-mRNA-1
Gene Sequence

>Msa0475490

ATGGCGGAACAACCTCTTCCATCTGAGGATCCTGCAACAATTCCAGCTATTGATGACGACGACGACGATGAGGACTATACTGATGATGGTGATGATACTATGGATGAATTGGATGAAGAAACAAATGGTAATTCGGTGAACGTTGAAGGCACTTCAATTCCTGCAACTGCAACTGCAGCTGCAGCTGCAACACGTATTGGTGAACTCACTCTTTCTTTTGAAGGCGAGGTTTATGTCTTCCCCGATGTCACACATCAGAAGGTGCAAGCTGTTTTGCTGTTTTTGGGAGGAAGTGGTGCGCAGCCAGGCATGCCCACAGCTGAACTGCCATTTGATCAGAGTAACAGGGGCTTGGGCGGTATTGCAAAGATTCCAAATCTTTCACGAAGAATAGCCTCCTTGGTCAGGTACCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGATACTCCGTGAGAAAAGAGGTGGCAGAAAGGATGCATCGGGAAAAGGGGCAGTTTGCACCCTTGAAGCAAAGCCCTGGTTCCTCTAGTTGGAATTCAGCACAGGGTGCTGGTCAAGATGGCAGTCCTAATCCTGAATCTCTACGTAGATGTCAACATTGTGGAGTCAATGAAAATAATACTCCTGCAATGCGTCGCGGACCAGCTGGACCAAGAACTTTGTGCAATGCATGCGGCCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGTAAGGGTGGAAGAAATCTTCCTGTTGAGCAAAGTCGTCTGGACCCTCCTGTTGATGTCAAGCCAACTGTTCTTGAAGGGGAATTCTCTGTCATTGAAAATGAACAAGGTATTTCTGAAGAACCTTCCAAGACTGTTGGTGCGGAAGGTTTGAATGATCATGCATCAAACCCTGGTGATGAGGAATTGTCTGAATCTGCAGAACACCTAACAAAAACACTGCCATTGGTAATTTGTCATTCTTCGGAAAATGATGATGAGCAGGAACCCGTGGTCGAGCTTTCTAATCCTTCAGATGCAGGAATGTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG

Protein sequence

>Msa0475490

MAEQPLPSEDPATIPAIDDDDDDEDYTDDGDDTMDELDEETNGNSVNVEGTSIPATATAAAAATRIGELTLSFEGEVYVFPDVTHQKVQAVLLFLGGSGAQPGMPTAELPFDQSNRGLGGIAKIPNLSRRIASLVRYREKRKERCFDKKIRYSVRKEVAERMHREKGQFAPLKQSPGSSSWNSAQGAGQDGSPNPESLRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLPVEQSRLDPPVDVKPTVLEGEFSVIENEQGISEEPSKTVGAEGLNDHASNPGDEELSESAEHLTKTLPLVICHSSENDDEQEPVVELSNPSDAGMSNPSDTDIDIPGNFD*