AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734190 MtrunA17_Chr5g0429771 84.490 245 14 1 1 221 66 310 2.80e-152 425
Msa0734190 MtrunA17_Chr5g0429781 78.723 141 30 0 81 221 1 141 2.29e-81 239
Msa0734190 MtrunA17_Chr5g0429811 74.825 143 36 0 77 219 23 165 3.91e-78 232
Msa0734190 MtrunA17_Chr5g0429791 71.831 71 20 0 7 77 75 145 3.96e-32 115
Msa0734190 MtrunA17_Chr1g0199941 31.293 147 74 2 13 132 33 179 1.21e-17 80.5
Msa0734190 MtrunA17_Chr8g0370491 31.973 147 73 2 13 132 33 179 1.61e-17 80.1
Msa0734190 MtrunA17_Chr5g0429821 75.000 40 10 0 4 43 77 116 3.14e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734190 AT5G58770.1 63.136 236 63 1 9 220 73 308 2.84e-107 311
Msa0734190 AT5G58782.1 52.263 243 92 1 2 220 46 288 1.37e-86 258
Msa0734190 AT5G58782.2 52.263 243 92 1 2 220 64 306 1.83e-86 258
Msa0734190 AT5G58780.1 53.975 239 86 1 6 220 63 301 3.27e-86 257
Msa0734190 AT2G23410.1 50.840 238 92 1 8 220 65 302 5.50e-82 247
Msa0734190 AT5G58784.1 52.941 221 80 1 12 208 69 289 5.98e-79 239
Msa0734190 AT2G23400.1 46.025 239 90 3 6 220 63 286 1.10e-67 210
Msa0734190 AT2G17570.1 31.076 251 114 3 13 211 39 282 1.15e-33 122
Msa0734190 AT5G60510.1 30.000 240 128 6 8 214 30 262 5.11e-26 102
Msa0734190 AT5G60500.1 29.787 235 125 6 13 214 34 261 3.44e-25 99.8
Msa0734190 AT2G23400.2 41.463 123 48 1 6 104 63 185 5.61e-25 97.4

Find 80 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAAATAAGTTGGAATTT+TGG 0.118115 5_1:-47879670 None:intergenic
TCCAAAATTCCAACTTATTT+TGG 0.139405 5_1:+47879669 Msa0734190:CDS
CAAAACGTCTCTGTCTATTT+TGG 0.158938 5_1:-47879981 None:intergenic
AGAAAACTTTGGCCAGATTT+TGG 0.177145 5_1:+47879925 Msa0734190:CDS
AATGCCATCTTGCACTTTCT+TGG 0.210412 5_1:-47879743 None:intergenic
TTGCATTCTCAACCGATAAT+TGG 0.274745 5_1:+47877629 Msa0734190:CDS
CAAAATAGACAGAGACGTTT+TGG 0.290018 5_1:+47879982 Msa0734190:CDS
TGTTAGTAATAATGTGAATA+TGG 0.301039 5_1:-47877208 None:intergenic
TAAGCATGTGGCGGTGATTA+TGG 0.306230 5_1:+47877480 Msa0734190:CDS
GTGTTATAGTTGGGGAATAA+AGG 0.324367 5_1:+47877594 Msa0734190:CDS
TAATTTCTTGTTATGGCAAT+TGG 0.324656 5_1:+47879879 Msa0734190:CDS
CTCATTCTCGATATTCTTCA+AGG 0.331892 5_1:+47877332 Msa0734190:five_prime_UTR
GGGTTAGTAATTTCTTGTTA+TGG 0.341933 5_1:+47879872 Msa0734190:CDS
GCAAGATGGCATTATTCATT+TGG 0.346742 5_1:+47879753 Msa0734190:CDS
AACTCATCCTTTCCAAAATC+TGG 0.362218 5_1:-47879937 None:intergenic
CTGGTCCGTATTAGTAAATC+CGG 0.368742 5_1:-47879838 None:intergenic
ATGAGAGGTGGGCAAAGATG+AGG 0.382978 5_1:+47877509 Msa0734190:CDS
GGTGAGGTTGTGTTATAGTT+GGG 0.400487 5_1:+47877585 Msa0734190:CDS
AGGGTGGTTAGTGGTGAATA+TGG 0.416967 5_1:-47877284 None:intergenic
CTTACCCGGATTTACTAATA+CGG 0.419675 5_1:+47879833 Msa0734190:CDS
CACCACTAACCACCCTCATC+GGG 0.423459 5_1:+47877291 Msa0734190:five_prime_UTR
CTTAGGTCGAATCCAATTAT+CGG 0.425110 5_1:-47877641 None:intergenic
TTGTTATTACGTAGTAATGT+AGG 0.428843 5_1:-47877141 None:intergenic
AGCTTACTGCCAAAATAAGT+TGG 0.440284 5_1:-47879678 None:intergenic
GATTCGGCTAATGTGGGAAA+TGG 0.442388 5_1:-47877174 None:intergenic
AAATGAAAATATTATTGAAA+AGG 0.447113 5_1:+47879783 Msa0734190:CDS
ATGTGTTGTTGAAACTTGAT+TGG 0.448324 5_1:-47877096 None:intergenic
TGGTGAGGTTGTGTTATAGT+TGG 0.451686 5_1:+47877584 Msa0734190:CDS
TGAGAGGTGGGCAAAGATGA+GGG 0.455809 5_1:+47877510 Msa0734190:CDS
GAAATTCAAATATCTGTGAT+TGG 0.459583 5_1:+47879577 Msa0734190:CDS
ACGGACCAGTGGAGAACTTA+GGG 0.473431 5_1:+47879852 Msa0734190:CDS
AGCTCCACTTGCAATTCCTC+TGG 0.477343 5_1:-47877451 None:intergenic
CGATAATTGGATTCGACCTA+AGG 0.480618 5_1:+47877642 Msa0734190:CDS
CGCGGCAATAGTGACGCGTT+TGG 0.485624 5_1:-47877362 None:intergenic
CCGTCTGCGGGTCATGTAGC+CGG 0.489572 5_1:+47877541 Msa0734190:CDS
TGATAACGATTCGGCTAATG+TGG 0.497047 5_1:-47877181 None:intergenic
CGTATTAGTAAATCCGGGTA+AGG 0.505626 5_1:-47879832 None:intergenic
TACGGACCAGTGGAGAACTT+AGG 0.513930 5_1:+47879851 Msa0734190:CDS
TATGGTTAGTGATAACGATT+CGG 0.516973 5_1:-47877190 None:intergenic
ACTTGCAATTCCTCTGGCAA+TGG 0.519084 5_1:-47877445 None:intergenic
TCACCACTAACCACCCTCAT+CGG 0.522617 5_1:+47877290 Msa0734190:five_prime_UTR
CGGCTACATGACCCGCAGAC+GGG 0.532986 5_1:-47877540 None:intergenic
AAGAGTTCTATCTAGTGGCA+TGG 0.545374 5_1:-47877249 None:intergenic
GTGAGGTTGTGTTATAGTTG+GGG 0.555675 5_1:+47877586 Msa0734190:CDS
ATAATCACCGCCACATGCTT+AGG 0.560502 5_1:-47877478 None:intergenic
TTGTACAGAATTTCCTTACC+CGG 0.560525 5_1:+47879819 Msa0734190:CDS
GAGAGGTGGGCAAAGATGAG+GGG 0.564499 5_1:+47877511 Msa0734190:CDS
ACTAACCCTAAGTTCTCCAC+TGG 0.570013 5_1:-47879857 None:intergenic
AGAGTTCTATCTAGTGGCAT+GGG 0.571631 5_1:-47877248 None:intergenic
ATGTGGCGGTGATTATGGAC+GGG 0.576395 5_1:+47877485 Msa0734190:CDS
TGTAAAGTCGTTGAGAAGGA+TGG 0.579930 5_1:+47877564 Msa0734190:CDS
GGCTACATGACCCGCAGACG+GGG 0.586275 5_1:-47877539 None:intergenic
CATGTGGCGGTGATTATGGA+CGG 0.587809 5_1:+47877484 Msa0734190:CDS
AGAGGTGGGCAAAGATGAGG+GGG 0.588352 5_1:+47877512 Msa0734190:CDS
GTTATAAGAGTTCTATCTAG+TGG 0.591644 5_1:-47877254 None:intergenic
CGGCTAATGTGGGAAATGGA+AGG 0.592085 5_1:-47877170 None:intergenic
GTGGTTAGTGGTGAATATGG+TGG 0.600658 5_1:-47877281 None:intergenic
TAGTGCTGAAGAGAGAACAA+AGG 0.604895 5_1:+47879642 Msa0734190:CDS
CCGGCTACATGACCCGCAGA+CGG 0.616650 5_1:-47877541 None:intergenic
TATGGACGGGAATGAGAGGT+GGG 0.617720 5_1:+47877498 Msa0734190:CDS
CAAACGCGTCACTATTGCCG+CGG 0.621205 5_1:+47877363 Msa0734190:five_prime_UTR
CCGGTGTAAAGTCGTTGAGA+AGG 0.624155 5_1:+47877560 Msa0734190:CDS
AGTCGTTGAGAAGGATGGTG+AGG 0.625194 5_1:+47877569 Msa0734190:CDS
TGATTATGGACGGGAATGAG+AGG 0.629325 5_1:+47877494 Msa0734190:CDS
GATAACGATTCGGCTAATGT+GGG 0.631394 5_1:-47877180 None:intergenic
AGAAATGGAGCCATTGCCAG+AGG 0.635367 5_1:+47877435 Msa0734190:exon
GGTGGATGGGGAAACTTCCG+TGG 0.636917 5_1:+47877399 Msa0734190:five_prime_UTR
CCTTCTCAACGACTTTACAC+CGG 0.638232 5_1:-47877560 None:intergenic
ATTGCCAGAGGAATTGCAAG+TGG 0.642211 5_1:+47877447 Msa0734190:CDS
TTATGGACGGGAATGAGAGG+TGG 0.644991 5_1:+47877497 Msa0734190:CDS
GTAGCCAAGAAAGTGCAAGA+TGG 0.652351 5_1:+47879739 Msa0734190:CDS
TGGTCCGTATTAGTAAATCC+GGG 0.652721 5_1:-47879837 None:intergenic
CACCTGATCCTGAAAAGCCG+CGG 0.664185 5_1:-47877380 None:intergenic
ACCACTAACCACCCTCATCG+GGG 0.667584 5_1:+47877292 Msa0734190:five_prime_UTR
CCACTAACCACCCTCATCGG+GGG 0.667937 5_1:+47877293 Msa0734190:five_prime_UTR
GCTACATGACCCGCAGACGG+GGG 0.669075 5_1:-47877538 None:intergenic
CTAATGTGGGAAATGGAAGG+TGG 0.674900 5_1:-47877167 None:intergenic
GATTTACTAATACGGACCAG+TGG 0.708808 5_1:+47879841 Msa0734190:CDS
GGAGCTGATGCCTAAGCATG+TGG 0.726762 5_1:+47877468 Msa0734190:CDS
GCTGATGCCTAAGCATGTGG+CGG 0.732913 5_1:+47877471 Msa0734190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTAATAATAATAAAA+AGG - chr5_1:47878244-47878263 None:intergenic 0.0%
!!! TTATTATTATTTTTTAAAAA+AGG + chr5_1:47878540-47878559 Msa0734190:intron 0.0%
!!! TATTTTTTTTTTGAAAGATA+TGG - chr5_1:47878153-47878172 None:intergenic 10.0%
!! AGAAAATAATTACTAAATTA+AGG + chr5_1:47879095-47879114 Msa0734190:intron 10.0%
!! AAATGAAAATATTATTGAAA+AGG + chr5_1:47879783-47879802 Msa0734190:CDS 10.0%
!!! TTATTCTTAGTTTTGATTAT+TGG + chr5_1:47877733-47877752 Msa0734190:intron 15.0%
!! AAACTACTTGTAATAAAATA+TGG - chr5_1:47877886-47877905 None:intergenic 15.0%
!!! CAACACAATATTTTAAAATA+TGG - chr5_1:47878186-47878205 None:intergenic 15.0%
!!! TCTCAATATAAATGTTTTTA+AGG - chr5_1:47878861-47878880 None:intergenic 15.0%
!! ATAATTACTAAATTAAGGAA+AGG + chr5_1:47879100-47879119 Msa0734190:intron 15.0%
!! TAATTACTAAATTAAGGAAA+GGG + chr5_1:47879101-47879120 Msa0734190:intron 15.0%
!!! GTATTTTTATTTTTTTCTGT+AGG + chr5_1:47879192-47879211 Msa0734190:intron 15.0%
!!! TTTTCTTTAATAGAAAACTT+TGG + chr5_1:47879914-47879933 Msa0734190:CDS 15.0%
!! TGTTAGTAATAATGTGAATA+TGG - chr5_1:47877211-47877230 None:intergenic 20.0%
!! AATTTATTGTTCTTTCAAAG+AGG - chr5_1:47877801-47877820 None:intergenic 20.0%
!! TTTATATATACTGAGATGAA+TGG + chr5_1:47878642-47878661 Msa0734190:intron 20.0%
!! AAAAATAAAAATACTCTCTC+TGG - chr5_1:47879186-47879205 None:intergenic 20.0%
!!! ATGTTGATAACTTTTTCAAT+AGG + chr5_1:47879261-47879280 Msa0734190:intron 20.0%
!!! TGTTGATAACTTTTTCAATA+GGG + chr5_1:47879262-47879281 Msa0734190:intron 20.0%
!! TAAGATCACTTTAATATAAG+GGG - chr5_1:47879508-47879527 None:intergenic 20.0%
!! GTAAGATCACTTTAATATAA+GGG - chr5_1:47879509-47879528 None:intergenic 20.0%
!! TGTAAGATCACTTTAATATA+AGG - chr5_1:47879510-47879529 None:intergenic 20.0%
!! TTGTTATTACGTAGTAATGT+AGG - chr5_1:47877144-47877163 None:intergenic 25.0%
! AGTGAAATTAAAATGACCTT+AGG - chr5_1:47877661-47877680 None:intergenic 25.0%
! ATCACATTAGTTATTGATAG+TGG + chr5_1:47877710-47877729 Msa0734190:intron 25.0%
! AATTACTTAAAGCAGTCATA+GGG - chr5_1:47878448-47878467 None:intergenic 25.0%
! TAATTACTTAAAGCAGTCAT+AGG - chr5_1:47878449-47878468 None:intergenic 25.0%
!!! TCATTCATCTTCTTTTTTTG+AGG - chr5_1:47878679-47878698 None:intergenic 25.0%
! TCTTGAGTATAAAAAACGAA+AGG - chr5_1:47879163-47879182 None:intergenic 25.0%
! CTTTAATATAAGGGGAAAAA+AGG - chr5_1:47879500-47879519 None:intergenic 25.0%
! GAAATTCAAATATCTGTGAT+TGG + chr5_1:47879577-47879596 Msa0734190:CDS 25.0%
!! ATCATACTTTTCAATGACAT+GGG - chr5_1:47879619-47879638 None:intergenic 25.0%
!! TATCATACTTTTCAATGACA+TGG - chr5_1:47879620-47879639 None:intergenic 25.0%
!! TCCAAAATTCCAACTTATTT+TGG + chr5_1:47879669-47879688 Msa0734190:CDS 25.0%
!! TAATTTCTTGTTATGGCAAT+TGG + chr5_1:47879879-47879898 Msa0734190:CDS 25.0%
!!! TCTATTTTGGAATGAAGTTA+AGG - chr5_1:47879971-47879990 None:intergenic 25.0%
! ATGTGTTGTTGAAACTTGAT+TGG - chr5_1:47877099-47877118 None:intergenic 30.0%
! TATGGTTAGTGATAACGATT+CGG - chr5_1:47877193-47877212 None:intergenic 30.0%
GTTATAAGAGTTCTATCTAG+TGG - chr5_1:47877257-47877276 None:intergenic 30.0%
!!! GTTTTGATTATTGGTGTTAC+TGG + chr5_1:47877742-47877761 Msa0734190:intron 30.0%
! TAGTGATGCATTGATATTGT+AGG + chr5_1:47878060-47878079 Msa0734190:intron 30.0%
! AGTGATGCATTGATATTGTA+GGG + chr5_1:47878061-47878080 Msa0734190:intron 30.0%
ATTACTTAAAGCAGTCATAG+GGG - chr5_1:47878447-47878466 None:intergenic 30.0%
!!! TTCATCTTCTTTTTTTGAGG+TGG - chr5_1:47878676-47878695 None:intergenic 30.0%
! TTGTATAACCTCTTTTTGAC+AGG + chr5_1:47878823-47878842 Msa0734190:intron 30.0%
! TGTATAACCTCTTTTTGACA+GGG + chr5_1:47878824-47878843 Msa0734190:intron 30.0%
ATAATTTCCCTGTCAAAAAG+AGG - chr5_1:47878834-47878853 None:intergenic 30.0%
! AAAACACTGTGTTTTCTTCT+TGG + chr5_1:47878961-47878980 Msa0734190:intron 30.0%
! CTGTAGGTATTTTTCATTAG+AGG + chr5_1:47879208-47879227 Msa0734190:intron 30.0%
TAACACCATTACTTTGTTAC+AGG + chr5_1:47879550-47879569 Msa0734190:intron 30.0%
AACACCATTACTTTGTTACA+GGG + chr5_1:47879551-47879570 Msa0734190:intron 30.0%
! TCATACTTTTCAATGACATG+GGG - chr5_1:47879618-47879637 None:intergenic 30.0%
!! GCCAAAATAAGTTGGAATTT+TGG - chr5_1:47879673-47879692 None:intergenic 30.0%
! GGGTTAGTAATTTCTTGTTA+TGG + chr5_1:47879872-47879891 Msa0734190:CDS 30.0%
CTCATTCTCGATATTCTTCA+AGG + chr5_1:47877332-47877351 Msa0734190:five_prime_UTR 35.0%
! TTCTGAAAAATCTTCGTCCA+CGG - chr5_1:47877419-47877438 None:intergenic 35.0%
!! GGACGAAGATTTTTCAGAAA+TGG + chr5_1:47877420-47877439 Msa0734190:exon 35.0%
GTGTTATAGTTGGGGAATAA+AGG + chr5_1:47877594-47877613 Msa0734190:CDS 35.0%
TTGCATTCTCAACCGATAAT+TGG + chr5_1:47877629-47877648 Msa0734190:CDS 35.0%
CTTAGGTCGAATCCAATTAT+CGG - chr5_1:47877644-47877663 None:intergenic 35.0%
TATCACTCATTAACGACATG+AGG + chr5_1:47877982-47878001 Msa0734190:intron 35.0%
! AACACACTGTGTTTTCTTCT+TGG + chr5_1:47879067-47879086 Msa0734190:intron 35.0%
AACAAATAACCAACGTGAGT+TGG - chr5_1:47879335-47879354 None:intergenic 35.0%
AGCTTACTGCCAAAATAAGT+TGG - chr5_1:47879681-47879700 None:intergenic 35.0%
!! ATTTTGGCAGTAAGCTATAG+TGG + chr5_1:47879685-47879704 Msa0734190:CDS 35.0%
GCAAGATGGCATTATTCATT+TGG + chr5_1:47879753-47879772 Msa0734190:CDS 35.0%
TTGTACAGAATTTCCTTACC+CGG + chr5_1:47879819-47879838 Msa0734190:CDS 35.0%
CTTACCCGGATTTACTAATA+CGG + chr5_1:47879833-47879852 Msa0734190:CDS 35.0%
! AGAAAACTTTGGCCAGATTT+TGG + chr5_1:47879925-47879944 Msa0734190:CDS 35.0%
AACTCATCCTTTCCAAAATC+TGG - chr5_1:47879940-47879959 None:intergenic 35.0%
! CAAAACGTCTCTGTCTATTT+TGG - chr5_1:47879984-47880003 None:intergenic 35.0%
! CAAAATAGACAGAGACGTTT+TGG + chr5_1:47879982-47880001 Msa0734190:CDS 35.0%
! GATAACGATTCGGCTAATGT+GGG - chr5_1:47877183-47877202 None:intergenic 40.0%
! TGATAACGATTCGGCTAATG+TGG - chr5_1:47877184-47877203 None:intergenic 40.0%
AGAGTTCTATCTAGTGGCAT+GGG - chr5_1:47877251-47877270 None:intergenic 40.0%
AAGAGTTCTATCTAGTGGCA+TGG - chr5_1:47877252-47877271 None:intergenic 40.0%
TGTAAAGTCGTTGAGAAGGA+TGG + chr5_1:47877564-47877583 Msa0734190:CDS 40.0%
TGGTGAGGTTGTGTTATAGT+TGG + chr5_1:47877584-47877603 Msa0734190:CDS 40.0%
GGTGAGGTTGTGTTATAGTT+GGG + chr5_1:47877585-47877604 Msa0734190:CDS 40.0%
GTGAGGTTGTGTTATAGTTG+GGG + chr5_1:47877586-47877605 Msa0734190:CDS 40.0%
CGATAATTGGATTCGACCTA+AGG + chr5_1:47877642-47877661 Msa0734190:CDS 40.0%
! CTGAAATTGAAGCACTAGAG+AGG + chr5_1:47877821-47877840 Msa0734190:intron 40.0%
CCTTCCCTGTAACAAAGTAA+TGG - chr5_1:47879558-47879577 None:intergenic 40.0%
CCATTACTTTGTTACAGGGA+AGG + chr5_1:47879555-47879574 Msa0734190:intron 40.0%
! TAGTGCTGAAGAGAGAACAA+AGG + chr5_1:47879642-47879661 Msa0734190:CDS 40.0%
AATGCCATCTTGCACTTTCT+TGG - chr5_1:47879746-47879765 None:intergenic 40.0%
CGTATTAGTAAATCCGGGTA+AGG - chr5_1:47879835-47879854 None:intergenic 40.0%
TGGTCCGTATTAGTAAATCC+GGG - chr5_1:47879840-47879859 None:intergenic 40.0%
CTGGTCCGTATTAGTAAATC+CGG - chr5_1:47879841-47879860 None:intergenic 40.0%
GATTTACTAATACGGACCAG+TGG + chr5_1:47879841-47879860 Msa0734190:CDS 40.0%
!! ACTTTGGCCAGATTTTGGAA+AGG + chr5_1:47879930-47879949 Msa0734190:CDS 40.0%
! AATAGACAGAGACGTTTTGG+TGG + chr5_1:47879985-47880004 Msa0734190:CDS 40.0%
CTAATGTGGGAAATGGAAGG+TGG - chr5_1:47877170-47877189 None:intergenic 45.0%
GATTCGGCTAATGTGGGAAA+TGG - chr5_1:47877177-47877196 None:intergenic 45.0%
GTGGTTAGTGGTGAATATGG+TGG - chr5_1:47877284-47877303 None:intergenic 45.0%
AGGGTGGTTAGTGGTGAATA+TGG - chr5_1:47877287-47877306 None:intergenic 45.0%
!! CTTTTCAGGATCAGGTGGAT+GGG + chr5_1:47877386-47877405 Msa0734190:five_prime_UTR 45.0%
!! TTTTCAGGATCAGGTGGATG+GGG + chr5_1:47877387-47877406 Msa0734190:five_prime_UTR 45.0%
ACTTGCAATTCCTCTGGCAA+TGG - chr5_1:47877448-47877467 None:intergenic 45.0%
ATTGCCAGAGGAATTGCAAG+TGG + chr5_1:47877447-47877466 Msa0734190:CDS 45.0%
ATAATCACCGCCACATGCTT+AGG - chr5_1:47877481-47877500 None:intergenic 45.0%
TAAGCATGTGGCGGTGATTA+TGG + chr5_1:47877480-47877499 Msa0734190:CDS 45.0%
TGATTATGGACGGGAATGAG+AGG + chr5_1:47877494-47877513 Msa0734190:CDS 45.0%
CCTTCTCAACGACTTTACAC+CGG - chr5_1:47877563-47877582 None:intergenic 45.0%
!! TGGTGTTACTGGTGATATGC+AGG + chr5_1:47877753-47877772 Msa0734190:intron 45.0%
TGTTACTGGTGATATGCAGG+TGG + chr5_1:47877756-47877775 Msa0734190:intron 45.0%
!! AACCAACGTGAGTTGGTTCT+GGG - chr5_1:47879328-47879347 None:intergenic 45.0%
!! TAACCAACGTGAGTTGGTTC+TGG - chr5_1:47879329-47879348 None:intergenic 45.0%
! TGGCTACACTTTTGCATGCT+TGG - chr5_1:47879726-47879745 None:intergenic 45.0%
! GTAGCCAAGAAAGTGCAAGA+TGG + chr5_1:47879739-47879758 Msa0734190:CDS 45.0%
ACTAACCCTAAGTTCTCCAC+TGG - chr5_1:47879860-47879879 None:intergenic 45.0%
!!! TTATTATTATTATTTTTGAA+TGG - chr5_1:47878330-47878349 None:intergenic 5.0%
!!! ACTAATTAATATATATTTTT+AGG + chr5_1:47878390-47878409 Msa0734190:intron 5.0%
!!! CTAATTAATATATATTTTTA+GGG + chr5_1:47878391-47878410 Msa0734190:intron 5.0%
!!! TAATTAATATATATTTTTAG+GGG + chr5_1:47878392-47878411 Msa0734190:intron 5.0%
!!! TCTTTTTTTAAAAAAAAAAT+TGG + chr5_1:47878732-47878751 Msa0734190:intron 5.0%
CGGCTAATGTGGGAAATGGA+AGG - chr5_1:47877173-47877192 None:intergenic 50.0%
TCACCACTAACCACCCTCAT+CGG + chr5_1:47877290-47877309 Msa0734190:five_prime_UTR 50.0%
!! GCTTTTCAGGATCAGGTGGA+TGG + chr5_1:47877385-47877404 Msa0734190:five_prime_UTR 50.0%
AGAAATGGAGCCATTGCCAG+AGG + chr5_1:47877435-47877454 Msa0734190:exon 50.0%
AGCTCCACTTGCAATTCCTC+TGG - chr5_1:47877454-47877473 None:intergenic 50.0%
CATGTGGCGGTGATTATGGA+CGG + chr5_1:47877484-47877503 Msa0734190:CDS 50.0%
ATGTGGCGGTGATTATGGAC+GGG + chr5_1:47877485-47877504 Msa0734190:CDS 50.0%
TTATGGACGGGAATGAGAGG+TGG + chr5_1:47877497-47877516 Msa0734190:CDS 50.0%
TATGGACGGGAATGAGAGGT+GGG + chr5_1:47877498-47877517 Msa0734190:CDS 50.0%
ATGAGAGGTGGGCAAAGATG+AGG + chr5_1:47877509-47877528 Msa0734190:CDS 50.0%
TGAGAGGTGGGCAAAGATGA+GGG + chr5_1:47877510-47877529 Msa0734190:CDS 50.0%
CCGGTGTAAAGTCGTTGAGA+AGG + chr5_1:47877560-47877579 Msa0734190:CDS 50.0%
AGTCGTTGAGAAGGATGGTG+AGG + chr5_1:47877569-47877588 Msa0734190:CDS 50.0%
TACGGACCAGTGGAGAACTT+AGG + chr5_1:47879851-47879870 Msa0734190:CDS 50.0%
ACGGACCAGTGGAGAACTTA+GGG + chr5_1:47879852-47879871 Msa0734190:CDS 50.0%
CACCACTAACCACCCTCATC+GGG + chr5_1:47877291-47877310 Msa0734190:five_prime_UTR 55.0%
ACCACTAACCACCCTCATCG+GGG + chr5_1:47877292-47877311 Msa0734190:five_prime_UTR 55.0%
TCTGAGTGATCCCCCGATGA+GGG - chr5_1:47877306-47877325 None:intergenic 55.0%
ATCTGAGTGATCCCCCGATG+AGG - chr5_1:47877307-47877326 None:intergenic 55.0%
CAAACGCGTCACTATTGCCG+CGG + chr5_1:47877363-47877382 Msa0734190:five_prime_UTR 55.0%
! CACTATTGCCGCGGCTTTTC+AGG + chr5_1:47877372-47877391 Msa0734190:five_prime_UTR 55.0%
CACCTGATCCTGAAAAGCCG+CGG - chr5_1:47877383-47877402 None:intergenic 55.0%
GGAGCTGATGCCTAAGCATG+TGG + chr5_1:47877468-47877487 Msa0734190:CDS 55.0%
GCTGATGCCTAAGCATGTGG+CGG + chr5_1:47877471-47877490 Msa0734190:CDS 55.0%
GAGAGGTGGGCAAAGATGAG+GGG + chr5_1:47877511-47877530 Msa0734190:CDS 55.0%
AGAGGTGGGCAAAGATGAGG+GGG + chr5_1:47877512-47877531 Msa0734190:CDS 55.0%
GACCCAGAACCAACTCACGT+TGG + chr5_1:47879323-47879342 Msa0734190:intron 55.0%
CCACTAACCACCCTCATCGG+GGG + chr5_1:47877293-47877312 Msa0734190:five_prime_UTR 60.0%
CGCGGCAATAGTGACGCGTT+TGG - chr5_1:47877365-47877384 None:intergenic 60.0%
!! TGCCGCGGCTTTTCAGGATC+AGG + chr5_1:47877378-47877397 Msa0734190:five_prime_UTR 60.0%
!! CGCGGCTTTTCAGGATCAGG+TGG + chr5_1:47877381-47877400 Msa0734190:five_prime_UTR 60.0%
GGTGGATGGGGAAACTTCCG+TGG + chr5_1:47877399-47877418 Msa0734190:five_prime_UTR 60.0%
CCCCCGATGAGGGTGGTTAG+TGG - chr5_1:47877296-47877315 None:intergenic 65.0%
GAGTGATCCCCCGATGAGGG+TGG - chr5_1:47877303-47877322 None:intergenic 65.0%
GCTACATGACCCGCAGACGG+GGG - chr5_1:47877541-47877560 None:intergenic 65.0%
GGCTACATGACCCGCAGACG+GGG - chr5_1:47877542-47877561 None:intergenic 65.0%
CGGCTACATGACCCGCAGAC+GGG - chr5_1:47877543-47877562 None:intergenic 65.0%
CCGGCTACATGACCCGCAGA+CGG - chr5_1:47877544-47877563 None:intergenic 65.0%
CCGTCTGCGGGTCATGTAGC+CGG + chr5_1:47877541-47877560 Msa0734190:CDS 65.0%
GAGGGGGTTACCCCCGTCTG+CGG + chr5_1:47877528-47877547 Msa0734190:CDS 70.0%
AGGGGGTTACCCCCGTCTGC+GGG + chr5_1:47877529-47877548 Msa0734190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 47877087 47880017 47877087 ID=Msa0734190;Name=Msa0734190
chr5_1 mRNA 47877087 47880017 47877087 ID=Msa0734190-mRNA-1;Parent=Msa0734190;Name=Msa0734190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=352|0|0.5|1|0|0.5|2|0|221
chr5_1 exon 47877087 47877663 47877087 ID=Msa0734190-mRNA-1:exon:13697;Parent=Msa0734190-mRNA-1
chr5_1 exon 47879577 47880017 47879577 ID=Msa0734190-mRNA-1:exon:13698;Parent=Msa0734190-mRNA-1
chr5_1 five_prime_UTR 47877087 47877438 47877087 ID=Msa0734190-mRNA-1:five_prime_utr;Parent=Msa0734190-mRNA-1
chr5_1 CDS 47877439 47877663 47877439 ID=Msa0734190-mRNA-1:cds;Parent=Msa0734190-mRNA-1
chr5_1 CDS 47879577 47880017 47879577 ID=Msa0734190-mRNA-1:cds;Parent=Msa0734190-mRNA-1
Gene Sequence

>Msa0734190

ATGGAGCCATTGCCAGAGGAATTGCAAGTGGAGCTGATGCCTAAGCATGTGGCGGTGATTATGGACGGGAATGAGAGGTGGGCAAAGATGAGGGGGTTACCCCCGTCTGCGGGTCATGTAGCCGGTGTAAAGTCGTTGAGAAGGATGGTGAGGTTGTGTTATAGTTGGGGAATAAAGGTTCTAACTGTTTTTGCATTCTCAACCGATAATTGGATTCGACCTAAGGAAATTCAAATATCTGTGATTGGAGATACATCAAAGCTCCCCATGTCATTGAAAAGTATGATAGCTAGTGCTGAAGAGAGAACAAAGGAGAATCCAAAATTCCAACTTATTTTGGCAGTAAGCTATAGTGGAAAATACGATTTAGTCCAAGCATGCAAAAGTGTAGCCAAGAAAGTGCAAGATGGCATTATTCATTTGGAAGACATAAATGAAAATATTATTGAAAAGGAATTAGAAACTAATTGTACAGAATTTCCTTACCCGGATTTACTAATACGGACCAGTGGAGAACTTAGGGTTAGTAATTTCTTGTTATGGCAATTGGCATATACAGAACTTTTCTTTAATAGAAAACTTTGGCCAGATTTTGGAAAGGATGAGTTTGTAGAAGCCTTAACTTCATTCCAAAATAGACAGAGACGTTTTGGTGGACGATATTAA

Protein sequence

>Msa0734190

MEPLPEELQVELMPKHVAVIMDGNERWAKMRGLPPSAGHVAGVKSLRRMVRLCYSWGIKVLTVFAFSTDNWIRPKEIQISVIGDTSKLPMSLKSMIASAEERTKENPKFQLILAVSYSGKYDLVQACKSVAKKVQDGIIHLEDINENIIEKELETNCTEFPYPDLLIRTSGELRVSNFLLWQLAYTELFFNRKLWPDFGKDEFVEALTSFQNRQRRFGGRY*