Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870080 | XP_013450874.1 | 86.528 | 579 | 72 | 4 | 1 | 575 | 1 | 577 | 0.0 | 1012 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870080 | sp|Q4F883|SG101_ARATH | 39.106 | 537 | 259 | 18 | 44 | 568 | 54 | 534 | 2.50e-101 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870080 | A0A072U5B0 | 86.528 | 579 | 72 | 4 | 1 | 575 | 1 | 577 | 0.0 | 1012 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa0870080 | 0.810161 | 1.322537e-50 | -8.615850e-47 |
| Msa0061500 | Msa0870080 | 0.822112 | 2.818866e-53 | -8.615850e-47 |
| Msa0092410 | Msa0870080 | 0.808871 | 2.503528e-50 | -8.615850e-47 |
| Msa0631320 | Msa0870080 | 0.820804 | 5.650556e-53 | -8.615850e-47 |
| Msa0823440 | Msa0870080 | 0.805742 | 1.152412e-49 | -8.615850e-47 |
| Msa0137800 | Msa0870080 | 0.814673 | 1.366741e-51 | -8.615850e-47 |
| Msa0189610 | Msa0870080 | 0.806397 | 8.391504e-50 | -8.615850e-47 |
| Msa0236070 | Msa0870080 | 0.819187 | 1.324841e-52 | -8.615850e-47 |
| Msa0310440 | Msa0870080 | 0.810757 | 9.836889e-51 | -8.615850e-47 |
| Msa0319290 | Msa0870080 | 0.812664 | 3.783573e-51 | -8.615850e-47 |
| Msa0534870 | Msa0870080 | 0.824624 | 7.295588e-54 | -8.615850e-47 |
| Msa0870080 | Msa1372280 | 0.814597 | 1.420548e-51 | -8.615850e-47 |
| Msa0870080 | Msa1381480 | 0.800591 | 1.341079e-48 | -8.615850e-47 |
| Msa0870080 | Msa1405220 | 0.805242 | 1.466942e-49 | -8.615850e-47 |
| Msa0870080 | Msa1462360 | 0.804086 | 2.557528e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870080 | MtrunA17_Chr6g0451531 | 86.528 | 579 | 72 | 4 | 1 | 575 | 1 | 577 | 0.0 | 1012 |
| Msa0870080 | MtrunA17_Chr6g0451541 | 85.121 | 578 | 83 | 2 | 1 | 575 | 1 | 578 | 0.0 | 1002 |
| Msa0870080 | MtrunA17_Chr6g0451561 | 74.658 | 584 | 130 | 6 | 1 | 575 | 1 | 575 | 0.0 | 858 |
| Msa0870080 | MtrunA17_Chr3g0107671 | 64.888 | 581 | 192 | 5 | 1 | 575 | 1 | 575 | 0.0 | 741 |
| Msa0870080 | MtrunA17_Chr6g0451511 | 56.143 | 586 | 235 | 11 | 1 | 574 | 1 | 576 | 0.0 | 597 |
| Msa0870080 | MtrunA17_Chr3g0107661 | 62.755 | 196 | 70 | 2 | 1 | 195 | 1 | 194 | 4.52e-72 | 231 |
| Msa0870080 | MtrunA17_Chr3g0107651 | 68.613 | 137 | 41 | 1 | 279 | 415 | 2 | 136 | 3.55e-58 | 191 |
| Msa0870080 | MtrunA17_Chr8g0384621 | 26.255 | 518 | 302 | 17 | 102 | 546 | 101 | 611 | 4.02e-34 | 137 |
| Msa0870080 | MtrunA17_Chr3g0118251 | 25.348 | 359 | 210 | 15 | 207 | 540 | 275 | 600 | 9.54e-20 | 93.2 |
| Msa0870080 | MtrunA17_Chr3g0118541 | 23.562 | 365 | 206 | 17 | 207 | 540 | 286 | 608 | 1.45e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870080 | AT5G14930.2 | 39.106 | 537 | 259 | 18 | 44 | 568 | 54 | 534 | 2.54e-102 | 320 |
| Msa0870080 | AT3G52430.1 | 27.252 | 433 | 272 | 10 | 133 | 546 | 112 | 520 | 4.25e-41 | 156 |
| Msa0870080 | AT5G14930.3 | 43.850 | 187 | 96 | 5 | 44 | 229 | 54 | 232 | 2.12e-36 | 136 |
| Msa0870080 | AT3G48080.1 | 26.371 | 383 | 189 | 19 | 207 | 539 | 264 | 603 | 1.79e-11 | 67.4 |
Find 88 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTTCATTCAGTTTCT+TGG | 0.135337 | 6_1:-4368053 | None:intergenic |
| GAATTTGAGGACTATGTTTA+TGG | 0.172177 | 6_1:+4368580 | Msa0870080:CDS |
| GAAGGATTATAAAGCTATTA+AGG | 0.197163 | 6_1:+4368669 | Msa0870080:CDS |
| TGAAAATCCTGAATCAAATT+TGG | 0.201287 | 6_1:+4367111 | Msa0870080:CDS |
| GAAGTGAGTTATTGGAAATA+TGG | 0.246157 | 6_1:-4365248 | None:intergenic |
| ATTATTTCCAAATTTGATTC+AGG | 0.262197 | 6_1:-4367118 | None:intergenic |
| GTAACTCCGTTGATTGTTAC+TGG | 0.268042 | 6_1:+4366818 | Msa0870080:CDS |
| AGAAGAGGTATTGAATAAAT+TGG | 0.271295 | 6_1:+4368555 | Msa0870080:CDS |
| TGAACCTTATTGATAAATAA+TGG | 0.275608 | 6_1:+4368854 | Msa0870080:three_prime_UTR |
| GCTTCCATTATTTATCAATA+AGG | 0.280610 | 6_1:-4368858 | None:intergenic |
| TGACTATAGACTCTTGCTTT+TGG | 0.283810 | 6_1:+4368476 | Msa0870080:CDS |
| CCATATCACGTAGTTCTAAT+TGG | 0.302095 | 6_1:+4366972 | Msa0870080:CDS |
| GTAACAATCAACGGAGTTAC+TGG | 0.321178 | 6_1:-4366815 | None:intergenic |
| CTTATATGTTGTAATAAATC+AGG | 0.322479 | 6_1:+4368806 | Msa0870080:three_prime_UTR |
| TCAATTATTACATACAGTTT+AGG | 0.324280 | 6_1:-4365334 | None:intergenic |
| GAATAAATTGGTTGAATTTG+AGG | 0.332286 | 6_1:+4368567 | Msa0870080:CDS |
| TTGAAGATTGGAAGAATCTA+TGG | 0.335987 | 6_1:-4365631 | None:intergenic |
| TTATTATGCAGCAAACATTA+AGG | 0.337212 | 6_1:-4368775 | None:intergenic |
| CCAATTAGAACTACGTGATA+TGG | 0.350866 | 6_1:-4366972 | None:intergenic |
| AAAGATTAAGCTGTATGGTT+TGG | 0.357357 | 6_1:+4368738 | Msa0870080:CDS |
| AACGCAGCGCCTTCTCTTTG+AGG | 0.370138 | 6_1:-4368244 | None:intergenic |
| AATCAAACCACTTTGAAGAT+TGG | 0.374235 | 6_1:-4365643 | None:intergenic |
| ATGTAATGGAAGTGAGTTAT+TGG | 0.374249 | 6_1:-4365256 | None:intergenic |
| AAGATTAAGCTGTATGGTTT+GGG | 0.377569 | 6_1:+4368739 | Msa0870080:CDS |
| CTATGTTTATGGTTTGCTTA+AGG | 0.380016 | 6_1:+4368591 | Msa0870080:CDS |
| ACTTCAAAACTTTGGAAGAA+TGG | 0.381044 | 6_1:+4368383 | Msa0870080:CDS |
| ATTTCACATACCAGAATGTT+TGG | 0.383284 | 6_1:-4367325 | None:intergenic |
| AGGATTGACACCAAACATTC+TGG | 0.383720 | 6_1:+4367315 | Msa0870080:CDS |
| ATCCAAACACTTCAAAACTT+TGG | 0.383816 | 6_1:+4368375 | Msa0870080:CDS |
| TTGCTAAGAAGGGTAGTAAT+AGG | 0.392963 | 6_1:-4365144 | None:intergenic |
| ATTGTTACTGGAAAAGGTCT+TGG | 0.395512 | 6_1:+4366830 | Msa0870080:CDS |
| GGATTCAAATTAGATGATTA+CGG | 0.396102 | 6_1:+4367175 | Msa0870080:CDS |
| CACAATTTATTGGGAAAAGA+TGG | 0.397786 | 6_1:+4368201 | Msa0870080:CDS |
| ATCACAAACTACATGCCTTT+CGG | 0.398239 | 6_1:+4367049 | Msa0870080:CDS |
| GCTTGATGAGTTGAAATCTA+AGG | 0.406363 | 6_1:+4365785 | Msa0870080:CDS |
| CCGTTGATTGTTACTGGAAA+AGG | 0.408017 | 6_1:+4366824 | Msa0870080:CDS |
| TGCAAGTGCAATTGCTAAGA+AGG | 0.416004 | 6_1:-4365155 | None:intergenic |
| CGTCCACTATGCGTCACGTT+TGG | 0.419264 | 6_1:+4366914 | Msa0870080:CDS |
| CTTTGCCTCAAGAAAATCTC+AGG | 0.419803 | 6_1:-4368628 | None:intergenic |
| ATTTCATTCAGTTTCTTGGA+TGG | 0.448594 | 6_1:-4368049 | None:intergenic |
| ACGTTTGGTTCACCTCTTGT+TGG | 0.452258 | 6_1:+4366929 | Msa0870080:CDS |
| AAGGCTATAATAGTCAAATC+AGG | 0.452500 | 6_1:-4365600 | None:intergenic |
| AAGGATTATAAAGCTATTAA+GGG | 0.468996 | 6_1:+4368670 | Msa0870080:CDS |
| TGGTGACAAGAAATTGCAAC+AGG | 0.479241 | 6_1:+4366949 | Msa0870080:CDS |
| CGTTATCGCTGGCTCTTCGG+TGG | 0.483152 | 6_1:+4368268 | Msa0870080:CDS |
| AGAATCTATGGTAGCTTCAA+AGG | 0.487090 | 6_1:-4365619 | None:intergenic |
| TAGAAGCTTATGTTATGTAA+TGG | 0.489534 | 6_1:-4365270 | None:intergenic |
| TTAGGTTGTGCCATGGTGCT+AGG | 0.502151 | 6_1:-4365316 | None:intergenic |
| AAAGACATAGTTACAAATGA+TGG | 0.503356 | 6_1:+4365540 | Msa0870080:CDS |
| GAATGAAATGAAGCGACATA+TGG | 0.505636 | 6_1:+4368063 | Msa0870080:CDS |
| GTTACTGGAAAAGGTCTTGG+AGG | 0.510890 | 6_1:+4366833 | Msa0870080:CDS |
| AAAATGCATGGACAAAATCA+AGG | 0.512387 | 6_1:+4367154 | Msa0870080:CDS |
| GACATATGGCGCAACTTGAA+TGG | 0.517973 | 6_1:+4368077 | Msa0870080:CDS |
| ATAGTTACAAATGATGGTGT+TGG | 0.526184 | 6_1:+4365546 | Msa0870080:CDS |
| GCTGACTTCATGAATGATGC+TGG | 0.528477 | 6_1:+4368715 | Msa0870080:CDS |
| AAGTGAGTTATTGGAAATAT+GGG | 0.531544 | 6_1:-4365247 | None:intergenic |
| GCTGGAAAGATTAAGCTGTA+TGG | 0.534665 | 6_1:+4368733 | Msa0870080:CDS |
| GAACTGAAGCCTCAAAGAGA+AGG | 0.549949 | 6_1:+4368235 | Msa0870080:CDS |
| GAATGAGTCCCGTCTCCAGC+CGG | 0.554619 | 6_1:-4367250 | None:intergenic |
| TGGAACTACATATAGAAGAA+TGG | 0.555344 | 6_1:+4368288 | Msa0870080:CDS |
| GGCAAAGTAGCTATATGAGT+TGG | 0.559632 | 6_1:+4368644 | Msa0870080:CDS |
| GAACCAAACGTGACGCATAG+TGG | 0.562977 | 6_1:-4366917 | None:intergenic |
| GTGATGAATAGCCTTGGAAG+AGG | 0.565611 | 6_1:-4367031 | None:intergenic |
| CTTGCAATGATCCTCTTCCA+AGG | 0.569151 | 6_1:+4367020 | Msa0870080:CDS |
| TAGCTATATGAGTTGGTGGA+AGG | 0.570581 | 6_1:+4368651 | Msa0870080:CDS |
| AGTTTGCAGTTGCAAGCACT+AGG | 0.576986 | 6_1:+4367295 | Msa0870080:CDS |
| CATTCAGATTCACTTGTGAT+CGG | 0.577931 | 6_1:+4367268 | Msa0870080:CDS |
| GATTCTTCCAATCTTCAAAG+TGG | 0.578901 | 6_1:+4365636 | Msa0870080:CDS |
| TAGTTTGTGATGAATAGCCT+TGG | 0.589154 | 6_1:-4367037 | None:intergenic |
| ATGATGGTGTTGGATTGTGT+TGG | 0.590699 | 6_1:+4365556 | Msa0870080:CDS |
| GCAAGTGCAATTGCTAAGAA+GGG | 0.592647 | 6_1:-4365154 | None:intergenic |
| ATTGCTCAATACTATAGAGA+TGG | 0.594666 | 6_1:+4368325 | Msa0870080:CDS |
| GTGCTATTCAGAGAGAAAGA+AGG | 0.596253 | 6_1:-4365729 | None:intergenic |
| CAAAAGAGAAATGTTCCGAA+AGG | 0.596999 | 6_1:-4367064 | None:intergenic |
| AATTTCTTGTCACCAACAAG+AGG | 0.597556 | 6_1:-4366941 | None:intergenic |
| ATACAGTTTAGGTTGTGCCA+TGG | 0.608316 | 6_1:-4365323 | None:intergenic |
| GAGTTATTGGAAATATGGGA+TGG | 0.608762 | 6_1:-4365243 | None:intergenic |
| TATGATTGCAGATTTAGCAG+TGG | 0.609923 | 6_1:+4365444 | Msa0870080:intron |
| GCTCAATACTATAGAGATGG+TGG | 0.610937 | 6_1:+4368328 | Msa0870080:CDS |
| TAGTTCAAGTAGAAAGAATG+TGG | 0.614312 | 6_1:+4368444 | Msa0870080:CDS |
| ATATCACTATTAGACAACAT+TGG | 0.614599 | 6_1:+4366878 | Msa0870080:CDS |
| AAAGTAGCTATATGAGTTGG+TGG | 0.616200 | 6_1:+4368647 | Msa0870080:CDS |
| CGAAGTAAAAGACAAAGAAG+AGG | 0.622916 | 6_1:+4368540 | Msa0870080:CDS |
| GTGACACTAAGCAAAATGCA+TGG | 0.630976 | 6_1:+4367142 | Msa0870080:CDS |
| TTTGCCTCAAGAAAATCTCA+GGG | 0.641885 | 6_1:-4368627 | None:intergenic |
| TAGTATTGAGCAATAACTAG+TGG | 0.657631 | 6_1:-4368316 | None:intergenic |
| AATTAATCTTCCTAGCACCA+TGG | 0.683880 | 6_1:+4365306 | Msa0870080:exon |
| TTGCCTCAAGAAAATCTCAG+GGG | 0.763292 | 6_1:-4368626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTAGTAATAAATAATAA+TGG | - | chr6_1:4365368-4365387 | None:intergenic | 10.0% |
| !!! | TATTTAGTTAATTTTGTATT+TGG | + | chr6_1:4365419-4365438 | Msa0870080:intron | 10.0% |
| !! | ACAATAAAAGATAAAATAAA+CGG | - | chr6_1:4366646-4366665 | None:intergenic | 10.0% |
| !! | AAAATAATCCAAAAAGATAA+GGG | - | chr6_1:4365817-4365836 | None:intergenic | 15.0% |
| !! | AAAAATAATCCAAAAAGATA+AGG | - | chr6_1:4365818-4365837 | None:intergenic | 15.0% |
| !! | AATATCTTCAATTAATATCT+AGG | - | chr6_1:4366083-4366102 | None:intergenic | 15.0% |
| !! | AGATAAACAATTTAATTAAG+TGG | + | chr6_1:4367456-4367475 | Msa0870080:intron | 15.0% |
| !! | AACAAAAGATAAAATAAAGT+CGG | + | chr6_1:4367530-4367549 | Msa0870080:intron | 15.0% |
| !!! | AAAGACTATACTTTTTTTGA+GGG | + | chr6_1:4365197-4365216 | Msa0870080:five_prime_UTR | 20.0% |
| !! | TCAATTATTACATACAGTTT+AGG | - | chr6_1:4365337-4365356 | None:intergenic | 20.0% |
| !!! | CTTTTTGGATTATTTTTTTG+AGG | + | chr6_1:4365821-4365840 | Msa0870080:intron | 20.0% |
| !! | AGACACAAATCAAAAAATAA+CGG | + | chr6_1:4366022-4366041 | Msa0870080:intron | 20.0% |
| !!! | TTTATCCTAAACACTATTTT+AGG | - | chr6_1:4366471-4366490 | None:intergenic | 20.0% |
| !!! | TAGTGTTTAGGATAAAAATA+TGG | + | chr6_1:4366475-4366494 | Msa0870080:intron | 20.0% |
| !!! | TTTAGGATAAAAATATGGAA+AGG | + | chr6_1:4366480-4366499 | Msa0870080:intron | 20.0% |
| !! | TTAGGATAAAAATATGGAAA+GGG | + | chr6_1:4366481-4366500 | Msa0870080:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr6_1:4366613-4366632 | None:intergenic | 20.0% |
| !! | ATTATTTCCAAATTTGATTC+AGG | - | chr6_1:4367121-4367140 | None:intergenic | 20.0% |
| !! | TCATTTAATTAAACCACATT+AGG | + | chr6_1:4367377-4367396 | Msa0870080:intron | 20.0% |
| !! | TATAGAAATAACTTACACAT+AGG | - | chr6_1:4367511-4367530 | None:intergenic | 20.0% |
| !!! | AATCAAAATTGACTTATTTG+AGG | - | chr6_1:4367664-4367683 | None:intergenic | 20.0% |
| !! | AAAACAAAAAATCTTCACAT+AGG | + | chr6_1:4368109-4368128 | Msa0870080:CDS | 20.0% |
| !! | AAACAAAAAATCTTCACATA+GGG | + | chr6_1:4368110-4368129 | Msa0870080:CDS | 20.0% |
| !! | ATAAAAAGCTCACAATTTAT+TGG | + | chr6_1:4368191-4368210 | Msa0870080:CDS | 20.0% |
| !! | TAAAAAGCTCACAATTTATT+GGG | + | chr6_1:4368192-4368211 | Msa0870080:CDS | 20.0% |
| !!! | TGAACTATTTGATTCATTTT+CGG | - | chr6_1:4368431-4368450 | None:intergenic | 20.0% |
| !! | AAGGATTATAAAGCTATTAA+GGG | + | chr6_1:4368670-4368689 | Msa0870080:CDS | 20.0% |
| !! | CTTATATGTTGTAATAAATC+AGG | + | chr6_1:4368806-4368825 | Msa0870080:three_prime_UTR | 20.0% |
| !! | TGAACCTTATTGATAAATAA+TGG | + | chr6_1:4368854-4368873 | Msa0870080:three_prime_UTR | 20.0% |
| !! | CTCAAAAAAAGTATAGTCTT+TGG | - | chr6_1:4365198-4365217 | None:intergenic | 25.0% |
| !!! | CAAAGACTATACTTTTTTTG+AGG | + | chr6_1:4365196-4365215 | Msa0870080:five_prime_UTR | 25.0% |
| ! | AAGTGAGTTATTGGAAATAT+GGG | - | chr6_1:4365250-4365269 | None:intergenic | 25.0% |
| ! | TAGAAGCTTATGTTATGTAA+TGG | - | chr6_1:4365273-4365292 | None:intergenic | 25.0% |
| ! | ATCAAATCCTTAAAAAAGCA+TGG | + | chr6_1:4365496-4365515 | Msa0870080:CDS | 25.0% |
| !!! | TAACATTCCATGCTTTTTTA+AGG | - | chr6_1:4365506-4365525 | None:intergenic | 25.0% |
| ! | AAAGACATAGTTACAAATGA+TGG | + | chr6_1:4365540-4365559 | Msa0870080:CDS | 25.0% |
| ! | TTAGTGATTGTTGTGTAAAA+TGG | + | chr6_1:4365898-4365917 | Msa0870080:intron | 25.0% |
| ! | GACACAAATCAAAAAATAAC+GGG | + | chr6_1:4366023-4366042 | Msa0870080:intron | 25.0% |
| ! | TTATGCCTAAAATAGTGTTT+AGG | + | chr6_1:4366463-4366482 | Msa0870080:intron | 25.0% |
| ! | GATAAAATAAACGGAGATTA+TGG | - | chr6_1:4366637-4366656 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+CGG | + | chr6_1:4366679-4366698 | Msa0870080:intron | 25.0% |
| !! | ACAATCTTAATGCAGATTTT+AGG | + | chr6_1:4366785-4366804 | Msa0870080:intron | 25.0% |
| ! | ATATCACTATTAGACAACAT+TGG | + | chr6_1:4366878-4366897 | Msa0870080:CDS | 25.0% |
| ! | TGAAAATCCTGAATCAAATT+TGG | + | chr6_1:4367111-4367130 | Msa0870080:CDS | 25.0% |
| ! | GGATTCAAATTAGATGATTA+CGG | + | chr6_1:4367175-4367194 | Msa0870080:CDS | 25.0% |
| !!! | TTTTAAGGATGTTTTTATGC+CGG | + | chr6_1:4367231-4367250 | Msa0870080:CDS | 25.0% |
| ! | TAAACAAAACTAACCTAATG+TGG | - | chr6_1:4367393-4367412 | None:intergenic | 25.0% |
| !! | TTTAACTTCAAGTAGTTCAT+TGG | + | chr6_1:4367409-4367428 | Msa0870080:intron | 25.0% |
| ! | AAACTATCCTTAAGATCTTA+TGG | + | chr6_1:4367585-4367604 | Msa0870080:intron | 25.0% |
| !!! | CTCATTTCTAAAATTGACTT+GGG | + | chr6_1:4367930-4367949 | Msa0870080:intron | 25.0% |
| !! | CAAATAATGTCTTCTTTTGA+CGG | - | chr6_1:4368027-4368046 | None:intergenic | 25.0% |
| !!! | AGAAGAGGTATTGAATAAAT+TGG | + | chr6_1:4368555-4368574 | Msa0870080:CDS | 25.0% |
| ! | GAATAAATTGGTTGAATTTG+AGG | + | chr6_1:4368567-4368586 | Msa0870080:CDS | 25.0% |
| ! | GAAGGATTATAAAGCTATTA+AGG | + | chr6_1:4368669-4368688 | Msa0870080:CDS | 25.0% |
| ! | TTATTATGCAGCAAACATTA+AGG | - | chr6_1:4368778-4368797 | None:intergenic | 25.0% |
| ! | GCTTCCATTATTTATCAATA+AGG | - | chr6_1:4368861-4368880 | None:intergenic | 25.0% |
| GAAGTGAGTTATTGGAAATA+TGG | - | chr6_1:4365251-4365270 | None:intergenic | 30.0% | |
| ! | ATGTAATGGAAGTGAGTTAT+TGG | - | chr6_1:4365259-4365278 | None:intergenic | 30.0% |
| ! | ATAGTTACAAATGATGGTGT+TGG | + | chr6_1:4365546-4365565 | Msa0870080:CDS | 30.0% |
| AAGGCTATAATAGTCAAATC+AGG | - | chr6_1:4365603-4365622 | None:intergenic | 30.0% | |
| TTGAAGATTGGAAGAATCTA+TGG | - | chr6_1:4365634-4365653 | None:intergenic | 30.0% | |
| ! | AATCAAACCACTTTGAAGAT+TGG | - | chr6_1:4365646-4365665 | None:intergenic | 30.0% |
| ! | GGTATTTTCCCTTATCTTTT+TGG | + | chr6_1:4365806-4365825 | Msa0870080:intron | 30.0% |
| TCACTAAATTTGCAAGAAAC+TGG | - | chr6_1:4365885-4365904 | None:intergenic | 30.0% | |
| GTAAAATGGTCAATGATTCA+TGG | + | chr6_1:4365912-4365931 | Msa0870080:intron | 30.0% | |
| !! | CTATAAAAGGAAAGTGTTGT+TGG | + | chr6_1:4366055-4366074 | Msa0870080:intron | 30.0% |
| CATTTACACAGTTAGTGTAT+CGG | - | chr6_1:4366307-4366326 | None:intergenic | 30.0% | |
| ACTTGTGTAAGCTTATTTAC+CGG | + | chr6_1:4366527-4366546 | Msa0870080:intron | 30.0% | |
| CAACTTATGGACATATCATA+AGG | - | chr6_1:4366600-4366619 | None:intergenic | 30.0% | |
| TGCATTAAGATTGTTGCATA+AGG | - | chr6_1:4366779-4366798 | None:intergenic | 30.0% | |
| AAAATGCATGGACAAAATCA+AGG | + | chr6_1:4367154-4367173 | Msa0870080:CDS | 30.0% | |
| TAAAAAATGCTTTACGTCTG+AGG | - | chr6_1:4367216-4367235 | None:intergenic | 30.0% | |
| !!! | CAGACGTAAAGCATTTTTTA+AGG | + | chr6_1:4367216-4367235 | Msa0870080:CDS | 30.0% |
| ATTTCACATACCAGAATGTT+TGG | - | chr6_1:4367328-4367347 | None:intergenic | 30.0% | |
| !! | TTCATTGGAGCTTGTTAATA+AGG | + | chr6_1:4367424-4367443 | Msa0870080:intron | 30.0% |
| CTTGTTTCCATAAGATCTTA+AGG | - | chr6_1:4367595-4367614 | None:intergenic | 30.0% | |
| TTAAACACAACTTCTTGTCA+AGG | - | chr6_1:4367826-4367845 | None:intergenic | 30.0% | |
| !! | CCAAGTCAATTTTAGAAATG+AGG | - | chr6_1:4367932-4367951 | None:intergenic | 30.0% |
| !! | CCTCATTTCTAAAATTGACT+TGG | + | chr6_1:4367929-4367948 | Msa0870080:intron | 30.0% |
| ATTTCATTCAGTTTCTTGGA+TGG | - | chr6_1:4368052-4368071 | None:intergenic | 30.0% | |
| CTTCATTTCATTCAGTTTCT+TGG | - | chr6_1:4368056-4368075 | None:intergenic | 30.0% | |
| CACAATTTATTGGGAAAAGA+TGG | + | chr6_1:4368201-4368220 | Msa0870080:CDS | 30.0% | |
| TGGAACTACATATAGAAGAA+TGG | + | chr6_1:4368288-4368307 | Msa0870080:CDS | 30.0% | |
| ! | TAGTATTGAGCAATAACTAG+TGG | - | chr6_1:4368319-4368338 | None:intergenic | 30.0% |
| ATTGCTCAATACTATAGAGA+TGG | + | chr6_1:4368325-4368344 | Msa0870080:CDS | 30.0% | |
| ATCCAAACACTTCAAAACTT+TGG | + | chr6_1:4368375-4368394 | Msa0870080:CDS | 30.0% | |
| !!! | TTCCAAAGTTTTGAAGTGTT+TGG | - | chr6_1:4368380-4368399 | None:intergenic | 30.0% |
| ! | ACTTCAAAACTTTGGAAGAA+TGG | + | chr6_1:4368383-4368402 | Msa0870080:CDS | 30.0% |
| TAGTTCAAGTAGAAAGAATG+TGG | + | chr6_1:4368444-4368463 | Msa0870080:CDS | 30.0% | |
| GAATTTGAGGACTATGTTTA+TGG | + | chr6_1:4368580-4368599 | Msa0870080:CDS | 30.0% | |
| !! | CTATGTTTATGGTTTGCTTA+AGG | + | chr6_1:4368591-4368610 | Msa0870080:CDS | 30.0% |
| AAAGATTAAGCTGTATGGTT+TGG | + | chr6_1:4368738-4368757 | Msa0870080:CDS | 30.0% | |
| AAGATTAAGCTGTATGGTTT+GGG | + | chr6_1:4368739-4368758 | Msa0870080:CDS | 30.0% | |
| TTGCTAAGAAGGGTAGTAAT+AGG | - | chr6_1:4365147-4365166 | None:intergenic | 35.0% | |
| GAGTTATTGGAAATATGGGA+TGG | - | chr6_1:4365246-4365265 | None:intergenic | 35.0% | |
| AATTAATCTTCCTAGCACCA+TGG | + | chr6_1:4365306-4365325 | Msa0870080:exon | 35.0% | |
| TATGATTGCAGATTTAGCAG+TGG | + | chr6_1:4365444-4365463 | Msa0870080:intron | 35.0% | |
| AGAATCTATGGTAGCTTCAA+AGG | - | chr6_1:4365622-4365641 | None:intergenic | 35.0% | |
| GATTCTTCCAATCTTCAAAG+TGG | + | chr6_1:4365636-4365655 | Msa0870080:CDS | 35.0% | |
| ! | GCTTGATGAGTTGAAATCTA+AGG | + | chr6_1:4365785-4365804 | Msa0870080:CDS | 35.0% |
| CGGGAGTTAGATTCTATAAA+AGG | + | chr6_1:4366042-4366061 | Msa0870080:intron | 35.0% | |
| !! | AGCACCAAAAGCTCTAAATT+TGG | + | chr6_1:4366123-4366142 | Msa0870080:intron | 35.0% |
| !! | AGGTCCAAATTTAGAGCTTT+TGG | - | chr6_1:4366130-4366149 | None:intergenic | 35.0% |
| ATTTGGACCTCAAAATATCG+AGG | + | chr6_1:4366140-4366159 | Msa0870080:intron | 35.0% | |
| TTCTTGCACACCATCATAAT+CGG | + | chr6_1:4366179-4366198 | Msa0870080:intron | 35.0% | |
| ATCCCTTTACTCTTTGCTTT+CGG | - | chr6_1:4366232-4366251 | None:intergenic | 35.0% | |
| TTCGTCTGATCTTAATCCAA+TGG | + | chr6_1:4366278-4366297 | Msa0870080:intron | 35.0% | |
| CGTATGCAAAACAGATGAAA+TGG | - | chr6_1:4366355-4366374 | None:intergenic | 35.0% | |
| ACTGTTTGAGAGAGCTTATA+TGG | + | chr6_1:4366569-4366588 | Msa0870080:intron | 35.0% | |
| CGGTCATCTTGTAACAATAA+TGG | + | chr6_1:4366699-4366718 | Msa0870080:intron | 35.0% | |
| TATGCATATTCCTAGCTTCT+AGG | + | chr6_1:4366728-4366747 | Msa0870080:intron | 35.0% | |
| ACAATATATGCCTAGAAGCT+AGG | - | chr6_1:4366741-4366760 | None:intergenic | 35.0% | |
| ! | CCTTTTCCAGTAACAATCAA+CGG | - | chr6_1:4366827-4366846 | None:intergenic | 35.0% |
| ATTGTTACTGGAAAAGGTCT+TGG | + | chr6_1:4366830-4366849 | Msa0870080:CDS | 35.0% | |
| AATTTCTTGTCACCAACAAG+AGG | - | chr6_1:4366944-4366963 | None:intergenic | 35.0% | |
| CCAATTAGAACTACGTGATA+TGG | - | chr6_1:4366975-4366994 | None:intergenic | 35.0% | |
| !! | CCATATCACGTAGTTCTAAT+TGG | + | chr6_1:4366972-4366991 | Msa0870080:CDS | 35.0% |
| ! | TAGTTTGTGATGAATAGCCT+TGG | - | chr6_1:4367040-4367059 | None:intergenic | 35.0% |
| ATCACAAACTACATGCCTTT+CGG | + | chr6_1:4367049-4367068 | Msa0870080:CDS | 35.0% | |
| CAAAAGAGAAATGTTCCGAA+AGG | - | chr6_1:4367067-4367086 | None:intergenic | 35.0% | |
| CATTCAGATTCACTTGTGAT+CGG | + | chr6_1:4367268-4367287 | Msa0870080:CDS | 35.0% | |
| CACATAGGCACTTATAAGAT+AGG | - | chr6_1:4367496-4367515 | None:intergenic | 35.0% | |
| ! | TAATGTCTTCTTTTGACGGA+TGG | - | chr6_1:4368023-4368042 | None:intergenic | 35.0% |
| GAATGAAATGAAGCGACATA+TGG | + | chr6_1:4368063-4368082 | Msa0870080:CDS | 35.0% | |
| ! | TGACTATAGACTCTTGCTTT+TGG | + | chr6_1:4368476-4368495 | Msa0870080:CDS | 35.0% |
| !! | GACTATAGACTCTTGCTTTT+GGG | + | chr6_1:4368477-4368496 | Msa0870080:CDS | 35.0% |
| CGAAGTAAAAGACAAAGAAG+AGG | + | chr6_1:4368540-4368559 | Msa0870080:CDS | 35.0% | |
| TTTGCCTCAAGAAAATCTCA+GGG | - | chr6_1:4368630-4368649 | None:intergenic | 35.0% | |
| ! | AAAGTAGCTATATGAGTTGG+TGG | + | chr6_1:4368647-4368666 | Msa0870080:CDS | 35.0% |
| GCAAGTGCAATTGCTAAGAA+GGG | - | chr6_1:4365157-4365176 | None:intergenic | 40.0% | |
| TGCAAGTGCAATTGCTAAGA+AGG | - | chr6_1:4365158-4365177 | None:intergenic | 40.0% | |
| !! | ATACAGTTTAGGTTGTGCCA+TGG | - | chr6_1:4365326-4365345 | None:intergenic | 40.0% |
| ! | ATGATGGTGTTGGATTGTGT+TGG | + | chr6_1:4365556-4365575 | Msa0870080:CDS | 40.0% |
| ! | GTGCTATTCAGAGAGAAAGA+AGG | - | chr6_1:4365732-4365751 | None:intergenic | 40.0% |
| !!! | AGAGCTTTTGGTGCTTCATT+TGG | - | chr6_1:4366118-4366137 | None:intergenic | 40.0% |
| GCAAGAAGATCAACAACACA+TGG | - | chr6_1:4366166-4366185 | None:intergenic | 40.0% | |
| CCAAAGATCAAACGATCACA+TGG | - | chr6_1:4366208-4366227 | None:intergenic | 40.0% | |
| CCATGTGATCGTTTGATCTT+TGG | + | chr6_1:4366205-4366224 | Msa0870080:intron | 40.0% | |
| GTCCGAAAGCAAAGAGTAAA+GGG | + | chr6_1:4366227-4366246 | Msa0870080:intron | 40.0% | |
| ! | GTTAGTGTATCGGTAACCAT+TGG | - | chr6_1:4366297-4366316 | None:intergenic | 40.0% |
| ! | GAAATGGATTCGTTGCAGTT+GGG | - | chr6_1:4366339-4366358 | None:intergenic | 40.0% |
| ! | TGAAATGGATTCGTTGCAGT+TGG | - | chr6_1:4366340-4366359 | None:intergenic | 40.0% |
| TCTCTCAAACAGTCTCACAA+AGG | - | chr6_1:4366562-4366581 | None:intergenic | 40.0% | |
| TGTTACAAGATGACCGTGTT+TGG | - | chr6_1:4366695-4366714 | None:intergenic | 40.0% | |
| GTAACAATCAACGGAGTTAC+TGG | - | chr6_1:4366818-4366837 | None:intergenic | 40.0% | |
| ! | GTAACTCCGTTGATTGTTAC+TGG | + | chr6_1:4366818-4366837 | Msa0870080:CDS | 40.0% |
| ! | CCGTTGATTGTTACTGGAAA+AGG | + | chr6_1:4366824-4366843 | Msa0870080:CDS | 40.0% |
| TGGTGACAAGAAATTGCAAC+AGG | + | chr6_1:4366949-4366968 | Msa0870080:CDS | 40.0% | |
| GTGACACTAAGCAAAATGCA+TGG | + | chr6_1:4367142-4367161 | Msa0870080:CDS | 40.0% | |
| AGGATTGACACCAAACATTC+TGG | + | chr6_1:4367315-4367334 | Msa0870080:CDS | 40.0% | |
| GCTCAATACTATAGAGATGG+TGG | + | chr6_1:4368328-4368347 | Msa0870080:CDS | 40.0% | |
| TTGCCTCAAGAAAATCTCAG+GGG | - | chr6_1:4368629-4368648 | None:intergenic | 40.0% | |
| CTTTGCCTCAAGAAAATCTC+AGG | - | chr6_1:4368631-4368650 | None:intergenic | 40.0% | |
| GGCAAAGTAGCTATATGAGT+TGG | + | chr6_1:4368644-4368663 | Msa0870080:CDS | 40.0% | |
| !! | TAGCTATATGAGTTGGTGGA+AGG | + | chr6_1:4368651-4368670 | Msa0870080:CDS | 40.0% |
| GCTGGAAAGATTAAGCTGTA+TGG | + | chr6_1:4368733-4368752 | Msa0870080:CDS | 40.0% | |
| ! | CACATGGCCTCGATATTTTG+AGG | - | chr6_1:4366150-4366169 | None:intergenic | 45.0% |
| TTGCACACCATCATAATCGG+AGG | + | chr6_1:4366182-4366201 | Msa0870080:intron | 45.0% | |
| GGTCCGAAAGCAAAGAGTAA+AGG | + | chr6_1:4366226-4366245 | Msa0870080:intron | 45.0% | |
| CTCACAAAGGCTTATGTCAC+CGG | - | chr6_1:4366549-4366568 | None:intergenic | 45.0% | |
| GTTACTGGAAAAGGTCTTGG+AGG | + | chr6_1:4366833-4366852 | Msa0870080:CDS | 45.0% | |
| ! | ACGTTTGGTTCACCTCTTGT+TGG | + | chr6_1:4366929-4366948 | Msa0870080:CDS | 45.0% |
| CTTGCAATGATCCTCTTCCA+AGG | + | chr6_1:4367020-4367039 | Msa0870080:CDS | 45.0% | |
| ! | GTGATGAATAGCCTTGGAAG+AGG | - | chr6_1:4367034-4367053 | None:intergenic | 45.0% |
| !! | AAGGATGTTTTTATGCCGGC+TGG | + | chr6_1:4367235-4367254 | Msa0870080:CDS | 45.0% |
| AGTTTGCAGTTGCAAGCACT+AGG | + | chr6_1:4367295-4367314 | Msa0870080:CDS | 45.0% | |
| CCTTCTTCGCTGTATTTGAC+CGG | + | chr6_1:4367749-4367768 | Msa0870080:intron | 45.0% | |
| CTTCTTCGCTGTATTTGACC+GGG | + | chr6_1:4367750-4367769 | Msa0870080:intron | 45.0% | |
| GACATATGGCGCAACTTGAA+TGG | + | chr6_1:4368077-4368096 | Msa0870080:CDS | 45.0% | |
| GAACTGAAGCCTCAAAGAGA+AGG | + | chr6_1:4368235-4368254 | Msa0870080:CDS | 45.0% | |
| !! | TTTCGTTATCGCTGGCTCTT+CGG | + | chr6_1:4368265-4368284 | Msa0870080:CDS | 45.0% |
| ! | CTTTTGGGCACATGTTGAAG+AGG | + | chr6_1:4368492-4368511 | Msa0870080:CDS | 45.0% |
| ! | TGTCCCCTGAGATTTTCTTG+AGG | + | chr6_1:4368623-4368642 | Msa0870080:CDS | 45.0% |
| ! | GCTGACTTCATGAATGATGC+TGG | + | chr6_1:4368715-4368734 | Msa0870080:CDS | 45.0% |
| ! | TTAGGTTGTGCCATGGTGCT+AGG | - | chr6_1:4365319-4365338 | None:intergenic | 50.0% |
| CACATGGCCTCCGATTATGA+TGG | - | chr6_1:4366192-4366211 | None:intergenic | 50.0% | |
| GAACCAAACGTGACGCATAG+TGG | - | chr6_1:4366920-4366939 | None:intergenic | 50.0% | |
| !! | GTTTTTATGCCGGCTGGAGA+CGG | + | chr6_1:4367241-4367260 | Msa0870080:CDS | 50.0% |
| !! | TTTTTATGCCGGCTGGAGAC+GGG | + | chr6_1:4367242-4367261 | Msa0870080:CDS | 50.0% |
| CCGGTCAAATACAGCGAAGA+AGG | - | chr6_1:4367752-4367771 | None:intergenic | 50.0% | |
| GACCGGGATTATCTCGATCT+TGG | + | chr6_1:4367766-4367785 | Msa0870080:intron | 50.0% | |
| CGCCAAGATCGAGATAATCC+CGG | - | chr6_1:4367771-4367790 | None:intergenic | 50.0% | |
| CGTCCACTATGCGTCACGTT+TGG | + | chr6_1:4366914-4366933 | Msa0870080:CDS | 55.0% | |
| AACGCAGCGCCTTCTCTTTG+AGG | - | chr6_1:4368247-4368266 | None:intergenic | 55.0% | |
| GAATGAGTCCCGTCTCCAGC+CGG | - | chr6_1:4367253-4367272 | None:intergenic | 60.0% | |
| GCGCTGCGTTTCGTTATCGC+TGG | + | chr6_1:4368257-4368276 | Msa0870080:CDS | 60.0% | |
| !! | CGTTATCGCTGGCTCTTCGG+TGG | + | chr6_1:4368268-4368287 | Msa0870080:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4365107 | 4368893 | 4365107 | ID=Msa0870080;Name=Msa0870080 |
| chr6_1 | mRNA | 4365107 | 4368893 | 4365107 | ID=Msa0870080-mRNA-1;Parent=Msa0870080;Name=Msa0870080-mRNA-1;_AED=0.26;_eAED=0.26;_QI=218|1|1|1|1|1|4|113|575 |
| chr6_1 | exon | 4365107 | 4365341 | 4365107 | ID=Msa0870080-mRNA-1:exon:1384;Parent=Msa0870080-mRNA-1 |
| chr6_1 | exon | 4365455 | 4365806 | 4365455 | ID=Msa0870080-mRNA-1:exon:1385;Parent=Msa0870080-mRNA-1 |
| chr6_1 | exon | 4366800 | 4367336 | 4366800 | ID=Msa0870080-mRNA-1:exon:1386;Parent=Msa0870080-mRNA-1 |
| chr6_1 | exon | 4367959 | 4368893 | 4367959 | ID=Msa0870080-mRNA-1:exon:1387;Parent=Msa0870080-mRNA-1 |
| chr6_1 | five_prime_UTR | 4365107 | 4365324 | 4365107 | ID=Msa0870080-mRNA-1:five_prime_utr;Parent=Msa0870080-mRNA-1 |
| chr6_1 | CDS | 4365325 | 4365341 | 4365325 | ID=Msa0870080-mRNA-1:cds;Parent=Msa0870080-mRNA-1 |
| chr6_1 | CDS | 4365455 | 4365806 | 4365455 | ID=Msa0870080-mRNA-1:cds;Parent=Msa0870080-mRNA-1 |
| chr6_1 | CDS | 4366800 | 4367336 | 4366800 | ID=Msa0870080-mRNA-1:cds;Parent=Msa0870080-mRNA-1 |
| chr6_1 | CDS | 4367959 | 4368780 | 4367959 | ID=Msa0870080-mRNA-1:cds;Parent=Msa0870080-mRNA-1 |
| chr6_1 | three_prime_UTR | 4368781 | 4368893 | 4368781 | ID=Msa0870080-mRNA-1:three_prime_utr;Parent=Msa0870080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
