AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381480 MtrunA17_Chr3g0139661 91.342 231 4 1 1 231 1 215 1.69e-154 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381480 AT5G11500.1 80.087 231 30 1 1 231 1 215 2.26e-138 387
Msa1381480 AT5G11500.2 79.654 231 30 1 1 231 1 214 9.79e-138 385

Find 88 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAACTATGCGAAATTATC+AGG 0.173736 tig0020435:-65538 Msa1381480:three_prime_UTR
TTGGGAGTTGAATTTCAATT+TGG 0.195511 tig0020435:+69725 None:intergenic
GATAAAGGAGAATATTAAAT+AGG 0.199656 tig0020435:-65745 Msa1381480:three_prime_UTR
TTCATGTAAACATTGGTTAT+TGG 0.243511 tig0020435:-65892 Msa1381480:exon
TTGGGTTAGGGTTCTGAGTT+TGG 0.289228 tig0020435:+69706 None:intergenic
GAGGGAAAGTGCGTTGGGTT+AGG 0.289703 tig0020435:+69693 None:intergenic
ATGGTGTAATCGCCAGCTTC+AGG 0.299549 tig0020435:+69589 None:intergenic
TGACATGAGTGAAGGTTTAT+TGG 0.304812 tig0020435:-68492 Msa1381480:CDS
TGGGAGTTGAATTTCAATTT+GGG 0.305116 tig0020435:+69726 None:intergenic
TGTGTACCCAATTGTGATTT+AGG 0.314237 tig0020435:-65768 Msa1381480:three_prime_UTR
CTTTATCCCTAAATCACAAT+TGG 0.320848 tig0020435:+65761 None:intergenic
TCCTGAAGCAATGTCTTTGT+TGG 0.330602 tig0020435:+65945 None:intergenic
TGAAATCCTCCTCCACTTCC+TGG 0.332125 tig0020435:+65911 None:intergenic
CAATTGTGATTTAGGGATAA+AGG 0.352542 tig0020435:-65760 Msa1381480:three_prime_UTR
CTGCATCATTGTCTTGGTTA+AGG 0.354589 tig0020435:-65804 Msa1381480:three_prime_UTR
TATTAGTCACCTTTCAAATC+AGG 0.362648 tig0020435:+67585 None:intergenic
TGAGTCTTGTTAGGCTTGTC+AGG 0.374176 tig0020435:-65586 Msa1381480:three_prime_UTR
AAATCTAAGCAACTCAATAA+TGG 0.375697 tig0020435:-69632 Msa1381480:exon
GTCAAAGCAAATTCAATTCA+AGG 0.385597 tig0020435:-68452 Msa1381480:intron
GGAAATAGAAAGACTAGAAA+AGG 0.394170 tig0020435:-66025 Msa1381480:CDS
TGGCGATTACACCATCTTCA+TGG 0.399028 tig0020435:-69581 Msa1381480:CDS
TGGGTTAGGGTTCTGAGTTT+GGG 0.402548 tig0020435:+69707 None:intergenic
GTGTACCCAATTGTGATTTA+GGG 0.403094 tig0020435:-65767 Msa1381480:three_prime_UTR
AGGGAAAGTGCGTTGGGTTA+GGG 0.407591 tig0020435:+69694 None:intergenic
ATAAAGGAGAATATTAAATA+GGG 0.409087 tig0020435:-65744 Msa1381480:three_prime_UTR
TAGGAGCTACAAGGGTTTGA+TGG 0.418648 tig0020435:-65986 Msa1381480:CDS
CACAAGCAAAGTTATAAATC+AGG 0.423869 tig0020435:+65674 None:intergenic
TTCAGGAAGCAAATCATTCC+AGG 0.424780 tig0020435:-65929 Msa1381480:CDS
TCCAACAAAGACATTGCTTC+AGG 0.427259 tig0020435:-65946 Msa1381480:CDS
TTGTTGAGAATTTGAGGATC+GGG 0.434188 tig0020435:-66201 Msa1381480:CDS
TGAACTTTGTTGAGAATTTG+AGG 0.440604 tig0020435:-66207 Msa1381480:CDS
CCAGTTGGGTTGTTTAATCA+TGG 0.441424 tig0020435:+65836 None:intergenic
CTTCAGCCCATGTTTATGTC+AGG 0.447158 tig0020435:-68538 Msa1381480:CDS
GGAGGGGAGAATGCAATGAT+TGG 0.450934 tig0020435:-65723 Msa1381480:three_prime_UTR
AGATAAATGAGATTGTTAAC+AGG 0.451759 tig0020435:-67635 Msa1381480:CDS
CCATGATTAAACAACCCAAC+TGG 0.462840 tig0020435:-65836 Msa1381480:three_prime_UTR
TTCAAAGCACGCCCTGAAGC+TGG 0.470944 tig0020435:-69601 Msa1381480:CDS
AGGAGAAACAATCAGAGCTT+AGG 0.472437 tig0020435:-66005 Msa1381480:CDS
CTGAAACTGCATCATTGTCT+TGG 0.475503 tig0020435:-65810 Msa1381480:three_prime_UTR
ACGGTTTCATCGAAGACATC+TGG 0.476438 tig0020435:-69522 Msa1381480:intron
TTTATCCCTAAATCACAATT+GGG 0.484561 tig0020435:+65762 None:intergenic
TTTAAAGAAAACTGCTTCGA+TGG 0.487046 tig0020435:-67862 Msa1381480:CDS
TATAACTTTGCTTGTGACAA+TGG 0.488259 tig0020435:-65667 Msa1381480:three_prime_UTR
CTAGTCTTTCTATTTCCTCA+CGG 0.488887 tig0020435:+66031 None:intergenic
TGGTGTAATCGCCAGCTTCA+GGG 0.491316 tig0020435:+69590 None:intergenic
AAGCAAATCATTCCAGGAAG+TGG 0.495884 tig0020435:-65923 Msa1381480:CDS
GCACGCACGAACACGAGAGG+AGG 0.497469 tig0020435:+69674 None:intergenic
TTGATGTTGTTTACACTCCC+TGG 0.498834 tig0020435:-67890 Msa1381480:CDS
GAGAGGAGGGAAAGTGCGTT+GGG 0.499396 tig0020435:+69688 None:intergenic
TGCAGTTTCAGATTCCAGTT+GGG 0.507376 tig0020435:+65822 None:intergenic
GAATTTGAGGATCGGGCCTA+AGG 0.516977 tig0020435:-66194 Msa1381480:intron
AACGAGGAGCTCATCAAATA+CGG 0.524376 tig0020435:-69541 Msa1381480:CDS
TCGATGGACGTTGGTCAAGT+TGG 0.525188 tig0020435:-67846 Msa1381480:CDS
ATCATTCCAGGAAGTGGAGG+AGG 0.526776 tig0020435:-65917 Msa1381480:CDS
GGAGGATTTCATGTAAACAT+TGG 0.527466 tig0020435:-65899 Msa1381480:exon
CGAGAGGAGGGAAAGTGCGT+TGG 0.528671 tig0020435:+69687 None:intergenic
GGAGAATATTAAATAGGGAG+GGG 0.530404 tig0020435:-65739 Msa1381480:three_prime_UTR
ATGCAGTTTCAGATTCCAGT+TGG 0.535743 tig0020435:+65821 None:intergenic
AGGAGAATATTAAATAGGGA+GGG 0.537963 tig0020435:-65740 Msa1381480:three_prime_UTR
AATTGGGTACACACACCACT+TGG 0.544733 tig0020435:+65778 None:intergenic
CACGCACGAACACGAGAGGA+GGG 0.548328 tig0020435:+69675 None:intergenic
CACGCACGCACGAACACGAG+AGG 0.558592 tig0020435:+69671 None:intergenic
CTTGTCAAGACCCATGAAGA+TGG 0.559047 tig0020435:+69570 None:intergenic
AAGGAGAATATTAAATAGGG+AGG 0.563329 tig0020435:-65741 Msa1381480:three_prime_UTR
GGCGATTACACCATCTTCAT+GGG 0.565091 tig0020435:-69580 Msa1381480:CDS
TTAACTATGCGAAATTATCA+GGG 0.568132 tig0020435:-65537 Msa1381480:three_prime_UTR
ATCAGAGCTTAGGAGCTACA+AGG 0.570116 tig0020435:-65995 Msa1381480:CDS
TTTGTTGAGAATTTGAGGAT+CGG 0.571410 tig0020435:-66202 Msa1381480:CDS
GAAAGAAAACCTGATTTGAA+AGG 0.573575 tig0020435:-67594 Msa1381480:intron
TTGGCTTATAGACAGATGAC+TGG 0.592804 tig0020435:-65873 Msa1381480:three_prime_UTR
GGGAGTTGAATTTCAATTTG+GGG 0.595002 tig0020435:+69727 None:intergenic
TGTGCAGCCTGACATAAACA+TGG 0.601148 tig0020435:+68531 None:intergenic
ACTATTGATGACATGAGTGA+AGG 0.607342 tig0020435:-68500 Msa1381480:CDS
CAAATCATTCCAGGAAGTGG+AGG 0.612983 tig0020435:-65920 Msa1381480:CDS
CTGAAGACATCTTATCAACA+TGG 0.615104 tig0020435:+68555 None:intergenic
CAGGCTAAACAAAACGAAGG+TGG 0.619805 tig0020435:-67616 Msa1381480:CDS
TTAGGTGCGAACTGTGAGAG+TGG 0.624552 tig0020435:-67664 Msa1381480:intron
TCTTGACAAGTTCGAGAACG+AGG 0.634328 tig0020435:-69557 Msa1381480:CDS
TCAGAGCTTAGGAGCTACAA+GGG 0.638922 tig0020435:-65994 Msa1381480:CDS
AAAACTGCTTCGATGGACGT+TGG 0.639922 tig0020435:-67855 Msa1381480:CDS
GCTTATAGACAGATGACTGG+TGG 0.679740 tig0020435:-65870 Msa1381480:three_prime_UTR
GTTTATGTCAGGCTGCACAA+AGG 0.698981 tig0020435:-68527 Msa1381480:CDS
CTGTGTGCAGAAGCGCCGTG+AGG 0.707586 tig0020435:-66046 Msa1381480:intron
GTGCAGCCTGACATAAACAT+GGG 0.715437 tig0020435:+68532 None:intergenic
TCAGGTATATAACCATCACA+AGG 0.717871 tig0020435:+65692 None:intergenic
TAACAGGCTAAACAAAACGA+AGG 0.733246 tig0020435:-67619 Msa1381480:CDS
CTGCTGCTGAAAGAGCTGAG+AGG 0.735071 tig0020435:-67342 Msa1381480:CDS
TCTTGGTTAAGGAAACCAAG+TGG 0.738141 tig0020435:-65793 Msa1381480:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTAATTAATGATTGAAT+CGG - tig0020435:66698-66717 Msa1381480:intron 15.0%
!! ATGTTAAAAAAAACCTATAA+AGG + tig0020435:67750-67769 None:intergenic 15.0%
!!! CATTTATGATTAGAATTTTA+TGG - tig0020435:67767-67786 Msa1381480:intron 15.0%
!! ATAAAGGAGAATATTAAATA+GGG - tig0020435:69545-69564 Msa1381480:CDS 15.0%
!!! TTTTTTCAAATAAGATGACA+TGG + tig0020435:66251-66270 None:intergenic 20.0%
!! GTTCAAATGATATTCTTATT+TGG - tig0020435:66610-66629 Msa1381480:intron 20.0%
!! CTTGAAAGAATACATAAAAT+TGG + tig0020435:66924-66943 None:intergenic 20.0%
!! TAATTTCAACTTATACAAGA+AGG + tig0020435:67089-67108 None:intergenic 20.0%
!! ATTTGTCATAAGCTTAAAAA+GGG + tig0020435:67166-67185 None:intergenic 20.0%
!! AATTTGTCATAAGCTTAAAA+AGG + tig0020435:67167-67186 None:intergenic 20.0%
!!! TACCTTTTTTTCTTTATTCA+TGG - tig0020435:67355-67374 Msa1381480:CDS 20.0%
!! AACTACTGCAAAAAAAAAAA+AGG + tig0020435:67542-67561 None:intergenic 20.0%
!!! TTTTTTTTTTTTGCAGTAGT+TGG - tig0020435:67541-67560 Msa1381480:intron 20.0%
!!! TTTTTTTTTTTGCAGTAGTT+GGG - tig0020435:67542-67561 Msa1381480:intron 20.0%
!!! ATTTTTACATTAGATTACTC+AGG - tig0020435:68267-68286 Msa1381480:intron 20.0%
!! TACTAAAAGTCATTATAATC+CGG - tig0020435:68415-68434 Msa1381480:intron 20.0%
!! ATAAACAGATAGAAAATACT+AGG - tig0020435:68470-68489 Msa1381480:CDS 20.0%
!! GATAAAGGAGAATATTAAAT+AGG - tig0020435:69544-69563 Msa1381480:CDS 20.0%
!!! ATAATTTTATGAGTCTTGTT+AGG - tig0020435:69694-69713 Msa1381480:five_prime_UTR 20.0%
!! TTATGTTTTATGCAGCAATT+CGG - tig0020435:65530-65549 Msa1381480:three_prime_UTR 25.0%
! AAATCTAAGCAACTCAATAA+TGG - tig0020435:65657-65676 Msa1381480:three_prime_UTR 25.0%
! AATTCATGAAATTGGCAAAT+AGG + tig0020435:65811-65830 None:intergenic 25.0%
! GAAGAAGAAATTCATGAAAT+TGG + tig0020435:65819-65838 None:intergenic 25.0%
! CAAAATCATAAATCAGACTA+AGG + tig0020435:65884-65903 None:intergenic 25.0%
!! TCTTTAGAAACTAGGATATT+GGG - tig0020435:65949-65968 Msa1381480:CDS 25.0%
! TTGATTGAATTTGTAGTGAT+TGG + tig0020435:66321-66340 None:intergenic 25.0%
!! ATTTAGAAATTTTGCATCAG+GGG + tig0020435:66570-66589 None:intergenic 25.0%
!! GATTTAGAAATTTTGCATCA+GGG + tig0020435:66571-66590 None:intergenic 25.0%
!! AGATTTAGAAATTTTGCATC+AGG + tig0020435:66572-66591 None:intergenic 25.0%
! ATTTCAGTTGCATTTATAAC+TGG - tig0020435:66953-66972 Msa1381480:intron 25.0%
! TTTATAACTGGAAATCTGAA+AGG - tig0020435:66965-66984 Msa1381480:intron 25.0%
!! GCTTATGACAAATTTTTCTT+AGG - tig0020435:67173-67192 Msa1381480:intron 25.0%
! TGCCATGAATAAAGAAAAAA+AGG + tig0020435:67360-67379 None:intergenic 25.0%
!!! TTTTTTTCTTTATTCATGGC+AGG - tig0020435:67359-67378 Msa1381480:CDS 25.0%
!!! TTTTTTCTTTATTCATGGCA+GGG - tig0020435:67360-67379 Msa1381480:CDS 25.0%
!!! TTTTTTTTTTGCAGTAGTTG+GGG - tig0020435:67543-67562 Msa1381480:intron 25.0%
! AGATAAATGAGATTGTTAAC+AGG - tig0020435:67654-67673 Msa1381480:CDS 25.0%
! AAAAAAAACCTATAAAGGCA+AGG + tig0020435:67745-67764 None:intergenic 25.0%
!! TTAGAATTTTATGGATGAAG+AGG - tig0020435:67776-67795 Msa1381480:intron 25.0%
! TATATTGTGCTTAGATACTT+TGG + tig0020435:68038-68057 None:intergenic 25.0%
! TAAGTTAACAGTATATCATG+AGG + tig0020435:68190-68209 None:intergenic 25.0%
! TATCTGTTTATTTCAGCATT+GGG + tig0020435:68461-68480 None:intergenic 25.0%
! TTATGAGTTTGACAATGATA+TGG + tig0020435:68524-68543 None:intergenic 25.0%
!! TTTTATTAGATCTTGACCAA+TGG - tig0020435:68560-68579 Msa1381480:CDS 25.0%
! AAAGATATTTCATTGTTAGC+AGG + tig0020435:68827-68846 None:intergenic 25.0%
! TCACAAATATAACATCCTAA+AGG + tig0020435:69065-69084 None:intergenic 25.0%
!!! GAAGATATTTCATTTTTAGC+AGG + tig0020435:69139-69158 None:intergenic 25.0%
!! TTCATGTAAACATTGGTTAT+TGG - tig0020435:69397-69416 Msa1381480:intron 25.0%
! TTTATCCCTAAATCACAATT+GGG + tig0020435:69530-69549 None:intergenic 25.0%
!!! AGGTTTAAACTTTTGCTTTT+AGG - tig0020435:69723-69742 Msa1381480:five_prime_UTR 25.0%
! TTAACTATGCGAAATTATCA+GGG - tig0020435:69752-69771 Msa1381480:five_prime_UTR 25.0%
!!! TTTTGAAGTATTCATGTTAC+TGG - tig0020435:69777-69796 Msa1381480:five_prime_UTR 25.0%
TGGGAGTTGAATTTCAATTT+GGG + tig0020435:65566-65585 None:intergenic 30.0%
TTGGGAGTTGAATTTCAATT+TGG + tig0020435:65567-65586 None:intergenic 30.0%
TGAAATTGGCAAATAGGAAA+TGG + tig0020435:65805-65824 None:intergenic 30.0%
! TTTCAGTGTCTTTAGAAACT+AGG - tig0020435:65941-65960 Msa1381480:CDS 30.0%
! GTCTTTAGAAACTAGGATAT+TGG - tig0020435:65948-65967 Msa1381480:CDS 30.0%
TGGGATTAGACTAATTACTT+TGG - tig0020435:65968-65987 Msa1381480:CDS 30.0%
!! TTACTTTGGTGATGTTTATG+TGG - tig0020435:65982-66001 Msa1381480:CDS 30.0%
! CGGTTATTTCAATAATACCA+TGG - tig0020435:66048-66067 Msa1381480:intron 30.0%
AATAATACCATGGCTATGAT+TGG - tig0020435:66058-66077 Msa1381480:intron 30.0%
GTAGTGATTGGTAAAATTAG+CGG + tig0020435:66309-66328 None:intergenic 30.0%
TACAATAGCAGATAGTTGAT+AGG + tig0020435:66408-66427 None:intergenic 30.0%
CACGTAAACATAGTTATGTT+TGG + tig0020435:66433-66452 None:intergenic 30.0%
GTCAAAGCAAATTCAATTCA+AGG - tig0020435:66837-66856 Msa1381480:intron 30.0%
GAAGCTATTGTTCAAAAAAC+TGG + tig0020435:67064-67083 None:intergenic 30.0%
TAAAACCTAGTATGAGAACT+AGG + tig0020435:67263-67282 None:intergenic 30.0%
ATCACTAACAGCACAAAATT+AGG + tig0020435:67335-67354 None:intergenic 30.0%
! GTTTTCTTTAAATTGGACCA+GGG + tig0020435:67419-67438 None:intergenic 30.0%
! AGTTTTCTTTAAATTGGACC+AGG + tig0020435:67420-67439 None:intergenic 30.0%
! CGAAGCAGTTTTCTTTAAAT+TGG + tig0020435:67426-67445 None:intergenic 30.0%
TTTAAAGAAAACTGCTTCGA+TGG - tig0020435:67427-67446 Msa1381480:intron 30.0%
! TGGTTTTCACAACTCAAAAA+TGG - tig0020435:67463-67482 Msa1381480:intron 30.0%
!!! AAATGGTCTGTTTTTACACT+TGG - tig0020435:67480-67499 Msa1381480:intron 30.0%
CACTTTAGACTATCATTATC+TGG - tig0020435:67590-67609 Msa1381480:intron 30.0%
! GAAAGAAAACCTGATTTGAA+AGG - tig0020435:67695-67714 Msa1381480:intron 30.0%
TATTAGTCACCTTTCAAATC+AGG + tig0020435:67707-67726 None:intergenic 30.0%
TATTCTTTCCTTGCCTTTAT+AGG - tig0020435:67734-67753 Msa1381480:intron 30.0%
ACAATACATTGTTGTATACC+TGG + tig0020435:68140-68159 None:intergenic 30.0%
ATGTATTGTCACATACATCA+TGG - tig0020435:68151-68170 Msa1381480:intron 30.0%
AACAACTAGAATAAGAACAC+CGG + tig0020435:68437-68456 None:intergenic 30.0%
CTATCTGTTTATTTCAGCAT+TGG + tig0020435:68462-68481 None:intergenic 30.0%
!! ATTTAAGTTTTCCTATGTCC+TGG - tig0020435:68686-68705 Msa1381480:intron 30.0%
!! TTTCCATCTTGTTGTTCTTT+AGG - tig0020435:68735-68754 Msa1381480:intron 30.0%
! TTTGTATCTTGTTGTCCTTT+AGG - tig0020435:69047-69066 Msa1381480:intron 30.0%
TGAACTTTGTTGAGAATTTG+AGG - tig0020435:69082-69101 Msa1381480:intron 30.0%
TTTGTTGAGAATTTGAGGAT+CGG - tig0020435:69087-69106 Msa1381480:intron 30.0%
GGAAATAGAAAGACTAGAAA+AGG - tig0020435:69264-69283 Msa1381480:intron 30.0%
CTTTATCCCTAAATCACAAT+TGG + tig0020435:69531-69550 None:intergenic 30.0%
CAATTGTGATTTAGGGATAA+AGG - tig0020435:69529-69548 Msa1381480:CDS 30.0%
AAGGAGAATATTAAATAGGG+AGG - tig0020435:69548-69567 Msa1381480:CDS 30.0%
AGGAGAATATTAAATAGGGA+GGG - tig0020435:69549-69568 Msa1381480:CDS 30.0%
CACAAGCAAAGTTATAAATC+AGG + tig0020435:69618-69637 None:intergenic 30.0%
TATAACTTTGCTTGTGACAA+TGG - tig0020435:69622-69641 Msa1381480:exon 30.0%
GTTAACTATGCGAAATTATC+AGG - tig0020435:69751-69770 Msa1381480:five_prime_UTR 30.0%
GGGAGTTGAATTTCAATTTG+GGG + tig0020435:65565-65584 None:intergenic 35.0%
GGCAAATAGGAAATGGAATT+CGG + tig0020435:65798-65817 None:intergenic 35.0%
GACACTGAAACAAAACGATT+TGG + tig0020435:65931-65950 None:intergenic 35.0%
GTTGTGATTCAATGATTCTG+CGG - tig0020435:66028-66047 Msa1381480:CDS 35.0%
GAGCTTATAAGCTCAAAATC+TGG + tig0020435:66089-66108 None:intergenic 35.0%
ACTCGTGAGAGAAACAAAAA+TGG + tig0020435:66141-66160 None:intergenic 35.0%
!! GTTGATAGGCTAGCTTATAA+CGG + tig0020435:66394-66413 None:intergenic 35.0%
! AGTTTTTAACCCCTGCAATA+TGG - tig0020435:66467-66486 Msa1381480:intron 35.0%
ACCGAAAATTCCATATTGCA+GGG + tig0020435:66480-66499 None:intergenic 35.0%
! TGATTGAATCGGTCTTTTGT+AGG - tig0020435:66709-66728 Msa1381480:intron 35.0%
CTGAAGACATCTTATCAACA+TGG + tig0020435:66737-66756 None:intergenic 35.0%
! ACTATTGATGACATGAGTGA+AGG - tig0020435:66789-66808 Msa1381480:intron 35.0%
TGACATGAGTGAAGGTTTAT+TGG - tig0020435:66797-66816 Msa1381480:intron 35.0%
ATCGCGATTAATTATTCCTC+TGG - tig0020435:66866-66885 Msa1381480:intron 35.0%
GAATACATAAAATTGGCCCT+TGG + tig0020435:66917-66936 None:intergenic 35.0%
ACTAAATGCCAATTCAAACC+TGG - tig0020435:67237-67256 Msa1381480:intron 35.0%
AACAGCACAAAATTAGGCTA+TGG + tig0020435:67329-67348 None:intergenic 35.0%
!!! ATCTGGCTTTTGTGCATTTT+AGG - tig0020435:67607-67626 Msa1381480:CDS 35.0%
TAACAGGCTAAACAAAACGA+AGG - tig0020435:67670-67689 Msa1381480:intron 35.0%
ATCTAGCCATTTAGTCATTG+TGG - tig0020435:67829-67848 Msa1381480:CDS 35.0%
TAGACACCACAATGACTAAA+TGG + tig0020435:67838-67857 None:intergenic 35.0%
GTGGTGTCTAATGTACAATA+TGG - tig0020435:67848-67867 Msa1381480:CDS 35.0%
TCAGCTGAGTCGAATTAAAT+TGG + tig0020435:67877-67896 None:intergenic 35.0%
! AGCTGATCTTGTTATCTATG+CGG - tig0020435:67891-67910 Msa1381480:CDS 35.0%
!!! CAGGCTAGTGATTATTTTAG+AGG - tig0020435:68286-68305 Msa1381480:intron 35.0%
CATCCTAAAGAACAACAAGA+TGG + tig0020435:68741-68760 None:intergenic 35.0%
! TTATCTTTTCCTCTGTCCTA+AGG - tig0020435:69000-69019 Msa1381480:intron 35.0%
TTGTTGAGAATTTGAGGATC+GGG - tig0020435:69088-69107 Msa1381480:intron 35.0%
! CTAGTCTTTCTATTTCCTCA+CGG + tig0020435:69261-69280 None:intergenic 35.0%
GGAGGATTTCATGTAAACAT+TGG - tig0020435:69390-69409 Msa1381480:intron 35.0%
TGTGTACCCAATTGTGATTT+AGG - tig0020435:69521-69540 Msa1381480:intron 35.0%
GTGTACCCAATTGTGATTTA+GGG - tig0020435:69522-69541 Msa1381480:intron 35.0%
GGAGAATATTAAATAGGGAG+GGG - tig0020435:69550-69569 Msa1381480:CDS 35.0%
!! TTGGTTTTCATACCTTGTGA+TGG - tig0020435:69585-69604 Msa1381480:CDS 35.0%
TCAGGTATATAACCATCACA+AGG + tig0020435:69600-69619 None:intergenic 35.0%
AACGAGGAGCTCATCAAATA+CGG - tig0020435:65748-65767 Msa1381480:three_prime_UTR 40.0%
TGTTTATGTGGCTCATGGTT+AGG - tig0020435:65994-66013 Msa1381480:CDS 40.0%
CCGAAAATTCCATATTGCAG+GGG + tig0020435:66479-66498 None:intergenic 40.0%
! CCCCTGCAATATGGAATTTT+CGG - tig0020435:66476-66495 Msa1381480:intron 40.0%
GACCGAAAATTCCATATTGC+AGG + tig0020435:66481-66500 None:intergenic 40.0%
TCTTCCAGTATAGATCTCGA+GGG - tig0020435:66518-66537 Msa1381480:intron 40.0%
!! TCTGAAAGGCTAAGAGCATT+TGG - tig0020435:66979-66998 Msa1381480:intron 40.0%
GCACAAAATTAGGCTATGGA+AGG + tig0020435:67325-67344 None:intergenic 40.0%
! TTGATGTTGTTTACACTCCC+TGG - tig0020435:67399-67418 Msa1381480:intron 40.0%
!!! TTTTTTTGCAGTAGTTGGGG+TGG - tig0020435:67546-67565 Msa1381480:intron 40.0%
! GCTGATCTTGTTATCTATGC+GGG - tig0020435:67892-67911 Msa1381480:CDS 40.0%
AAATCTGTACACTTGCATCC+AGG - tig0020435:68119-68138 Msa1381480:intron 40.0%
TTGTTTCGAAGCACAACCAT+TGG + tig0020435:68579-68598 None:intergenic 40.0%
GGTTGTGCTTCGAAACAAAT+TGG - tig0020435:68581-68600 Msa1381480:intron 40.0%
!!! GAATTTTAGAATCCAGCCCA+AGG - tig0020435:68783-68802 Msa1381480:intron 40.0%
AAGAAGACACCATGAACCTT+AGG + tig0020435:69114-69133 None:intergenic 40.0%
AGGAGAAACAATCAGAGCTT+AGG - tig0020435:69284-69303 Msa1381480:intron 40.0%
TCCAACAAAGACATTGCTTC+AGG - tig0020435:69343-69362 Msa1381480:intron 40.0%
TCCTGAAGCAATGTCTTTGT+TGG + tig0020435:69347-69366 None:intergenic 40.0%
TTCAGGAAGCAAATCATTCC+AGG - tig0020435:69360-69379 Msa1381480:intron 40.0%
AAGCAAATCATTCCAGGAAG+TGG - tig0020435:69366-69385 Msa1381480:intron 40.0%
TTGGCTTATAGACAGATGAC+TGG - tig0020435:69416-69435 Msa1381480:intron 40.0%
! CCAGTTGGGTTGTTTAATCA+TGG + tig0020435:69456-69475 None:intergenic 40.0%
CCATGATTAAACAACCCAAC+TGG - tig0020435:69453-69472 Msa1381480:intron 40.0%
TGCAGTTTCAGATTCCAGTT+GGG + tig0020435:69470-69489 None:intergenic 40.0%
ATGCAGTTTCAGATTCCAGT+TGG + tig0020435:69471-69490 None:intergenic 40.0%
CTGAAACTGCATCATTGTCT+TGG - tig0020435:69479-69498 Msa1381480:intron 40.0%
CTGCATCATTGTCTTGGTTA+AGG - tig0020435:69485-69504 Msa1381480:intron 40.0%
TCTTGGTTAAGGAAACCAAG+TGG - tig0020435:69496-69515 Msa1381480:intron 40.0%
!! TGGGTTAGGGTTCTGAGTTT+GGG + tig0020435:65585-65604 None:intergenic 45.0%
!! TTGGGTTAGGGTTCTGAGTT+TGG + tig0020435:65586-65605 None:intergenic 45.0%
TGGCGATTACACCATCTTCA+TGG - tig0020435:65708-65727 Msa1381480:three_prime_UTR 45.0%
GGCGATTACACCATCTTCAT+GGG - tig0020435:65709-65728 Msa1381480:three_prime_UTR 45.0%
CTTGTCAAGACCCATGAAGA+TGG + tig0020435:65722-65741 None:intergenic 45.0%
TCTTGACAAGTTCGAGAACG+AGG - tig0020435:65732-65751 Msa1381480:three_prime_UTR 45.0%
ACGGTTTCATCGAAGACATC+TGG - tig0020435:65767-65786 Msa1381480:three_prime_UTR 45.0%
GGTGATGTTTATGTGGCTCA+TGG - tig0020435:65989-66008 Msa1381480:CDS 45.0%
CTCTTCCAGTATAGATCTCG+AGG - tig0020435:66517-66536 Msa1381480:intron 45.0%
CTTCCAGTATAGATCTCGAG+GGG - tig0020435:66519-66538 Msa1381480:intron 45.0%
CTTCAGCCCATGTTTATGTC+AGG - tig0020435:66751-66770 Msa1381480:intron 45.0%
GTGCAGCCTGACATAAACAT+GGG + tig0020435:66760-66779 None:intergenic 45.0%
TGTGCAGCCTGACATAAACA+TGG + tig0020435:66761-66780 None:intergenic 45.0%
GTTTATGTCAGGCTGCACAA+AGG - tig0020435:66762-66781 Msa1381480:intron 45.0%
TTAGTTGACCCAAGGACCAA+GGG - tig0020435:66898-66917 Msa1381480:intron 45.0%
AAAATTGGCCCTTGGTCCTT+GGG + tig0020435:66909-66928 None:intergenic 45.0%
TAAAATTGGCCCTTGGTCCT+TGG + tig0020435:66910-66929 None:intergenic 45.0%
GAACTAGGCCAGGTTTGAAT+TGG + tig0020435:67248-67267 None:intergenic 45.0%
AAAACTGCTTCGATGGACGT+TGG - tig0020435:67434-67453 Msa1381480:intron 45.0%
CAGGCTAAACAAAACGAAGG+TGG - tig0020435:67673-67692 Msa1381480:intron 45.0%
CATGGCAGGTAAAAAGACAG+CGG + tig0020435:68630-68649 None:intergenic 45.0%
TGAAGAGAATGCAACATGGC+AGG + tig0020435:68644-68663 None:intergenic 45.0%
TGCCATGTTGCATTCTCTTC+AGG - tig0020435:68643-68662 Msa1381480:intron 45.0%
GCCATGTTGCATTCTCTTCA+GGG - tig0020435:68644-68663 Msa1381480:intron 45.0%
AAGAAGACACCGTGAACCTT+GGG + tig0020435:68802-68821 None:intergenic 45.0%
AAAGAAGACACCGTGAACCT+TGG + tig0020435:68803-68822 None:intergenic 45.0%
CTGCTATGTTGCATTCTCCT+CGG - tig0020435:68953-68972 Msa1381480:intron 45.0%
TGCTATGTTGCATTCTCCTC+GGG - tig0020435:68954-68973 Msa1381480:intron 45.0%
TAGTAGACAATTATGCCCCG+AGG + tig0020435:68973-68992 None:intergenic 45.0%
AAGTACTCAAGCAGTGCCTT+AGG + tig0020435:69019-69038 None:intergenic 45.0%
ATCAGAGCTTAGGAGCTACA+AGG - tig0020435:69294-69313 Msa1381480:intron 45.0%
TCAGAGCTTAGGAGCTACAA+GGG - tig0020435:69295-69314 Msa1381480:intron 45.0%
TAGGAGCTACAAGGGTTTGA+TGG - tig0020435:69303-69322 Msa1381480:intron 45.0%
CAAATCATTCCAGGAAGTGG+AGG - tig0020435:69369-69388 Msa1381480:intron 45.0%
GCTTATAGACAGATGACTGG+TGG - tig0020435:69419-69438 Msa1381480:intron 45.0%
AATTGGGTACACACACCACT+TGG + tig0020435:69514-69533 None:intergenic 45.0%
!! TGAGTCTTGTTAGGCTTGTC+AGG - tig0020435:69703-69722 Msa1381480:five_prime_UTR 45.0%
! AGGGAAAGTGCGTTGGGTTA+GGG + tig0020435:65598-65617 None:intergenic 50.0%
TGGTGTAATCGCCAGCTTCA+GGG + tig0020435:65702-65721 None:intergenic 50.0%
ATGGTGTAATCGCCAGCTTC+AGG + tig0020435:65703-65722 None:intergenic 50.0%
GGCATTGCCAATCATAGCCA+TGG + tig0020435:66068-66087 None:intergenic 50.0%
AAGCCCCTCGAGATCTATAC+TGG + tig0020435:66525-66544 None:intergenic 50.0%
CAACTAAGCGGATAGACCAG+AGG + tig0020435:66885-66904 None:intergenic 50.0%
CTATCCGCTTAGTTGACCCA+AGG - tig0020435:66890-66909 Msa1381480:intron 50.0%
TGGTCCTTGGGTCAACTAAG+CGG + tig0020435:66897-66916 None:intergenic 50.0%
CTTAGTTGACCCAAGGACCA+AGG - tig0020435:66897-66916 Msa1381480:intron 50.0%
CCTAGTATGAGAACTAGGCC+AGG + tig0020435:67258-67277 None:intergenic 50.0%
! CCTGGCCTAGTTCTCATACT+AGG - tig0020435:67255-67274 Msa1381480:intron 50.0%
TCGATGGACGTTGGTCAAGT+TGG - tig0020435:67443-67462 Msa1381480:intron 50.0%
TTAGGTGCGAACTGTGAGAG+TGG - tig0020435:67625-67644 Msa1381480:CDS 50.0%
GCCCTGAAGAGAATGCAACA+TGG + tig0020435:68648-68667 None:intergenic 50.0%
AAGAACTCAAGCAGTGCACC+AGG + tig0020435:68707-68726 None:intergenic 50.0%
AGAATCCAGCCCAAGGTTCA+CGG - tig0020435:68790-68809 Msa1381480:intron 50.0%
GCTATGTTGCATTCTCCTCG+GGG - tig0020435:68955-68974 Msa1381480:intron 50.0%
GAATTTGAGGATCGGGCCTA+AGG - tig0020435:69095-69114 Msa1381480:intron 50.0%
ATCATTCCAGGAAGTGGAGG+AGG - tig0020435:69372-69391 Msa1381480:intron 50.0%
TGAAATCCTCCTCCACTTCC+TGG + tig0020435:69381-69400 None:intergenic 50.0%
GGAGGGGAGAATGCAATGAT+TGG - tig0020435:69566-69585 Msa1381480:CDS 50.0%
! GAGGGAAAGTGCGTTGGGTT+AGG + tig0020435:65599-65618 None:intergenic 55.0%
! GAGAGGAGGGAAAGTGCGTT+GGG + tig0020435:65604-65623 None:intergenic 55.0%
TTCAAAGCACGCCCTGAAGC+TGG - tig0020435:65688-65707 Msa1381480:three_prime_UTR 55.0%
TTTGCAGTAGTTGGGGTGGC+TGG - tig0020435:67550-67569 Msa1381480:intron 55.0%
TTGCAGTAGTTGGGGTGGCT+GGG - tig0020435:67551-67570 Msa1381480:intron 55.0%
CTGCTGCTGAAAGAGCTGAG+AGG - tig0020435:67947-67966 Msa1381480:intron 55.0%
CAAGCAGTGCACCAGGACAT+AGG + tig0020435:68700-68719 None:intergenic 55.0%
CAAGCAGTGCCTTAGGACAG+AGG + tig0020435:69012-69031 None:intergenic 55.0%
AGGATCGGGCCTAAGGTTCA+TGG - tig0020435:69102-69121 Msa1381480:intron 55.0%
! CGAGAGGAGGGAAAGTGCGT+TGG + tig0020435:65605-65624 None:intergenic 60.0%
CACGCACGAACACGAGAGGA+GGG + tig0020435:65617-65636 None:intergenic 60.0%
! CTCGAGGGGCTTGCTCTTTC+TGG - tig0020435:66533-66552 Msa1381480:intron 60.0%
AGACACCGTGAACCTTGGGC+TGG + tig0020435:68798-68817 None:intergenic 60.0%
GCACGCACGAACACGAGAGG+AGG + tig0020435:65618-65637 None:intergenic 65.0%
CACGCACGCACGAACACGAG+AGG + tig0020435:65621-65640 None:intergenic 65.0%
!! CTGTGTGCAGAAGCGCCGTG+AGG - tig0020435:69243-69262 Msa1381480:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020435 gene 65489 69822 65489 ID=Msa1381480;Name=Msa1381480
tig0020435 mRNA 65489 69822 65489 ID=Msa1381480-mRNA-1;Parent=Msa1381480;Name=Msa1381480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=167|0.71|0.87|0.87|0.85|0.75|8|417|231
tig0020435 exon 65489 66058 65489 ID=Msa1381480-mRNA-1:exon:7629;Parent=Msa1381480-mRNA-1
tig0020435 exon 66195 66242 66195 ID=Msa1381480-mRNA-1:exon:7628;Parent=Msa1381480-mRNA-1
tig0020435 exon 67321 67382 67321 ID=Msa1381480-mRNA-1:exon:7627;Parent=Msa1381480-mRNA-1
tig0020435 exon 67595 67682 67595 ID=Msa1381480-mRNA-1:exon:7626;Parent=Msa1381480-mRNA-1
tig0020435 exon 67827 67930 67827 ID=Msa1381480-mRNA-1:exon:7625;Parent=Msa1381480-mRNA-1
tig0020435 exon 68453 68580 68453 ID=Msa1381480-mRNA-1:exon:7624;Parent=Msa1381480-mRNA-1
tig0020435 exon 69523 69661 69523 ID=Msa1381480-mRNA-1:exon:7623;Parent=Msa1381480-mRNA-1
tig0020435 exon 69682 69822 69682 ID=Msa1381480-mRNA-1:exon:7622;Parent=Msa1381480-mRNA-1
tig0020435 five_prime_UTR 69682 69822 69682 ID=Msa1381480-mRNA-1:five_prime_utr;Parent=Msa1381480-mRNA-1
tig0020435 five_prime_UTR 69636 69661 69636 ID=Msa1381480-mRNA-1:five_prime_utr;Parent=Msa1381480-mRNA-1
tig0020435 CDS 69523 69635 69523 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 CDS 68453 68580 68453 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 CDS 67827 67930 67827 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 CDS 67595 67682 67595 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 CDS 67321 67382 67321 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 CDS 66195 66242 66195 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 CDS 65906 66058 65906 ID=Msa1381480-mRNA-1:cds;Parent=Msa1381480-mRNA-1
tig0020435 three_prime_UTR 65489 65905 65489 ID=Msa1381480-mRNA-1:three_prime_utr;Parent=Msa1381480-mRNA-1
Gene Sequence

>Msa1381480

ATGGTGTTCTACTTCAAAGCACGCCCTGAAGCTGGCGATTACACCATCTTCATGGGTCTTGACAAGTTCGAGAACGAGGAGCTCATCAAATACGGTTTCATCGAAGACATCTGGTTCCATGTTGATAAGATGTCTTCAGCCCATGTTTATGTCAGGCTGCACAAAGGTCAAACTATTGATGACATGAGTGAAGGTTTATTGGAAGACTGTGCTCAACTTGTCAAAGCAAATTCAATTCAAGGGAATAAAGTAAACAACGTTGATGTTGTTTACACTCCCTGGTCCAATTTAAAGAAAACTGCTTCGATGGACGTTGGTCAAGTTGGTTTTCACAACTCAAAAATGGTGCGAACTGTGAGAGTGGAGAAGAAGATAAATGAGATTGTTAACAGGCTAAACAAAACGAAGGTGGAAAGAAAACCTGATTTGAAAGCTGAGCGAGAAGCAATTGCTGCTGCTGAAAGAGCTGAGAGGAAACATCAACTGAGAGAAAAAGATGTTATATTTGTGAACTTTGTTGAGAATTTGAGGATCGGGCCTAAGAAGCGCCGTGAGGAAATAGAAAGACTAGAAAAGGAGAAACAATCAGAGCTTAGGAGCTACAAGGGTTTGATGGTCGCAGAAAATATGACATCCAACAAAGACATTGCTTCAGGAAGCAAATCATTCCAGGAAGTGGAGGAGGATTTCATGTAA

Protein sequence

>Msa1381480

MVFYFKARPEAGDYTIFMGLDKFENEELIKYGFIEDIWFHVDKMSSAHVYVRLHKGQTIDDMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKKINEIVNRLNKTKVERKPDLKAEREAIAAAERAERKHQLREKDVIFVNFVENLRIGPKKRREEIERLEKEKQSELRSYKGLMVAENMTSNKDIASGSKSFQEVEEDFM*