Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872100 | AES74729.1 | 58.163 | 294 | 24 | 6 | 1 | 207 | 1 | 282 | 1.37e-97 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872100 | sp|Q38864|EXPA5_ARATH | 81.731 | 104 | 19 | 0 | 104 | 207 | 152 | 255 | 2.80e-56 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872100 | G7KKV8 | 58.163 | 294 | 24 | 6 | 1 | 207 | 1 | 282 | 6.57e-98 | 295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0278080 | Msa0872100 | 0.801193 | 1.010745e-48 | -8.615850e-47 |
| Msa0872100 | Msa0872110 | 0.862618 | 4.459400e-64 | -8.615850e-47 |
| Msa0872100 | Msa0905450 | 0.850015 | 2.231672e-60 | -8.615850e-47 |
| Msa0872100 | Msa1017590 | 0.807066 | 6.059703e-50 | -8.615850e-47 |
| Msa0872100 | Msa1070930 | 0.806135 | 9.527285e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872100 | MtrunA17_Chr6g0453341 | 97.917 | 96 | 2 | 0 | 112 | 207 | 159 | 254 | 3.63e-62 | 194 |
| Msa0872100 | MtrunA17_Chr7g0217661 | 87.500 | 104 | 13 | 0 | 104 | 207 | 139 | 242 | 5.23e-62 | 193 |
| Msa0872100 | MtrunA17_Chr5g0417701 | 54.118 | 170 | 60 | 4 | 39 | 205 | 93 | 247 | 2.82e-52 | 168 |
| Msa0872100 | MtrunA17_Chr3g0128801 | 68.033 | 122 | 36 | 1 | 84 | 205 | 135 | 253 | 1.34e-51 | 167 |
| Msa0872100 | MtrunA17_Chr3g0107311 | 75.490 | 102 | 25 | 0 | 104 | 205 | 153 | 254 | 3.18e-51 | 166 |
| Msa0872100 | MtrunA17_Chr3g0107291 | 75.490 | 102 | 25 | 0 | 104 | 205 | 159 | 260 | 3.93e-51 | 166 |
| Msa0872100 | MtrunA17_Chr4g0042521 | 54.601 | 163 | 54 | 4 | 48 | 206 | 102 | 248 | 1.00e-50 | 164 |
| Msa0872100 | MtrunA17_Chr3g0128791 | 67.213 | 122 | 37 | 1 | 84 | 205 | 135 | 253 | 1.05e-50 | 164 |
| Msa0872100 | MtrunA17_Chr5g0432611 | 63.115 | 122 | 42 | 1 | 84 | 205 | 133 | 251 | 2.75e-50 | 163 |
| Msa0872100 | MtrunA17_Chr3g0092071 | 70.588 | 102 | 30 | 0 | 104 | 205 | 146 | 247 | 1.05e-47 | 156 |
| Msa0872100 | MtrunA17_Chr5g0435311 | 60.784 | 102 | 40 | 0 | 104 | 205 | 205 | 306 | 1.40e-38 | 135 |
| Msa0872100 | MtrunA17_Chr7g0238681 | 60.784 | 102 | 40 | 0 | 104 | 205 | 155 | 256 | 1.44e-38 | 133 |
| Msa0872100 | MtrunA17_Chr1g0193631 | 60.396 | 101 | 39 | 1 | 104 | 203 | 154 | 254 | 4.54e-37 | 129 |
| Msa0872100 | MtrunA17_Chr2g0328261 | 59.804 | 102 | 41 | 0 | 104 | 205 | 157 | 258 | 4.68e-37 | 129 |
| Msa0872100 | MtrunA17_Chr1g0157061 | 54.000 | 100 | 46 | 0 | 104 | 203 | 139 | 238 | 9.42e-36 | 125 |
| Msa0872100 | MtrunA17_Chr4g0035711 | 50.968 | 155 | 25 | 2 | 1 | 104 | 114 | 268 | 2.41e-35 | 127 |
| Msa0872100 | MtrunA17_Chr4g0031621 | 59.804 | 102 | 41 | 0 | 104 | 205 | 155 | 256 | 3.66e-35 | 124 |
| Msa0872100 | MtrunA17_Chr5g0433841 | 35.468 | 203 | 116 | 3 | 5 | 207 | 79 | 266 | 6.71e-35 | 124 |
| Msa0872100 | MtrunA17_Chr4g0021561 | 51.961 | 102 | 49 | 0 | 104 | 205 | 155 | 256 | 4.39e-34 | 122 |
| Msa0872100 | MtrunA17_Chr7g0271001 | 56.122 | 98 | 42 | 1 | 104 | 200 | 151 | 248 | 3.86e-32 | 117 |
| Msa0872100 | MtrunA17_Chr3g0109801 | 50.980 | 102 | 50 | 0 | 104 | 205 | 183 | 284 | 5.04e-32 | 117 |
| Msa0872100 | MtrunA17_Chr2g0324181 | 49.505 | 101 | 51 | 0 | 105 | 205 | 17 | 117 | 4.34e-31 | 110 |
| Msa0872100 | MtrunA17_Chr7g0218741 | 51.961 | 102 | 48 | 1 | 104 | 204 | 150 | 251 | 5.44e-28 | 105 |
| Msa0872100 | MtrunA17_Chr4g0069711 | 46.535 | 101 | 53 | 1 | 104 | 203 | 182 | 282 | 8.58e-28 | 106 |
| Msa0872100 | MtrunA17_Chr7g0218751 | 54.000 | 100 | 46 | 0 | 104 | 203 | 149 | 248 | 1.09e-27 | 105 |
| Msa0872100 | MtrunA17_Chr4g0022841 | 45.455 | 99 | 54 | 0 | 104 | 202 | 18 | 116 | 1.56e-27 | 101 |
| Msa0872100 | MtrunA17_Chr7g0218761 | 50.000 | 100 | 50 | 0 | 104 | 203 | 110 | 209 | 2.17e-27 | 103 |
| Msa0872100 | MtrunA17_Chr8g0360041 | 51.515 | 99 | 48 | 0 | 104 | 202 | 152 | 250 | 1.55e-26 | 102 |
| Msa0872100 | MtrunA17_Chr5g0398271 | 46.535 | 101 | 53 | 1 | 104 | 203 | 159 | 259 | 6.53e-25 | 98.2 |
| Msa0872100 | MtrunA17_Chr8g0360721 | 48.454 | 97 | 50 | 0 | 104 | 200 | 119 | 215 | 3.68e-24 | 95.1 |
| Msa0872100 | MtrunA17_Chr4g0057091 | 43.434 | 99 | 55 | 1 | 104 | 201 | 158 | 256 | 4.63e-21 | 87.8 |
| Msa0872100 | MtrunA17_Chr8g0359971 | 50.649 | 77 | 37 | 1 | 126 | 201 | 1 | 77 | 3.58e-19 | 78.2 |
| Msa0872100 | MtrunA17_Chr1g0193571 | 59.259 | 54 | 22 | 0 | 150 | 203 | 4 | 57 | 6.27e-17 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872100 | AT3G29030.1 | 81.731 | 104 | 19 | 0 | 104 | 207 | 152 | 255 | 2.85e-57 | 181 |
| Msa0872100 | AT1G26770.1 | 77.451 | 102 | 23 | 0 | 104 | 205 | 147 | 248 | 5.44e-53 | 171 |
| Msa0872100 | AT1G26770.2 | 77.451 | 102 | 23 | 0 | 104 | 205 | 157 | 258 | 6.51e-53 | 171 |
| Msa0872100 | AT2G03090.1 | 77.451 | 102 | 23 | 0 | 104 | 205 | 151 | 252 | 2.42e-52 | 169 |
| Msa0872100 | AT1G69530.2 | 76.471 | 102 | 24 | 0 | 104 | 205 | 148 | 249 | 1.11e-49 | 162 |
| Msa0872100 | AT1G69530.1 | 76.471 | 102 | 24 | 0 | 104 | 205 | 148 | 249 | 1.11e-49 | 162 |
| Msa0872100 | AT1G69530.3 | 77.551 | 98 | 22 | 0 | 104 | 201 | 148 | 245 | 7.17e-48 | 158 |
| Msa0872100 | AT2G40610.1 | 63.415 | 123 | 41 | 2 | 84 | 205 | 134 | 253 | 1.59e-47 | 157 |
| Msa0872100 | AT5G56320.1 | 69.608 | 102 | 31 | 0 | 104 | 205 | 150 | 251 | 3.10e-47 | 156 |
| Msa0872100 | AT5G56320.2 | 69.608 | 102 | 31 | 0 | 104 | 205 | 150 | 251 | 3.10e-47 | 156 |
| Msa0872100 | AT5G56320.3 | 69.608 | 102 | 31 | 0 | 104 | 205 | 150 | 251 | 4.74e-47 | 157 |
| Msa0872100 | AT5G05290.1 | 63.107 | 103 | 37 | 1 | 104 | 205 | 153 | 255 | 9.78e-42 | 142 |
| Msa0872100 | AT5G02260.1 | 56.198 | 121 | 50 | 1 | 85 | 205 | 139 | 256 | 4.32e-40 | 137 |
| Msa0872100 | AT2G37640.2 | 60.185 | 108 | 43 | 0 | 98 | 205 | 128 | 235 | 3.07e-39 | 135 |
| Msa0872100 | AT2G37640.1 | 62.745 | 102 | 38 | 0 | 104 | 205 | 159 | 260 | 8.30e-39 | 134 |
| Msa0872100 | AT3G55500.1 | 58.824 | 102 | 42 | 0 | 104 | 205 | 157 | 258 | 2.14e-38 | 133 |
| Msa0872100 | AT2G39700.1 | 59.804 | 102 | 41 | 0 | 104 | 205 | 154 | 255 | 2.46e-38 | 133 |
| Msa0872100 | AT1G20190.2 | 47.552 | 143 | 64 | 2 | 70 | 201 | 46 | 188 | 6.79e-38 | 130 |
| Msa0872100 | AT1G20190.1 | 47.552 | 143 | 64 | 2 | 70 | 201 | 105 | 247 | 3.77e-37 | 130 |
| Msa0872100 | AT2G28950.1 | 61.765 | 102 | 39 | 0 | 104 | 205 | 154 | 255 | 1.46e-35 | 126 |
| Msa0872100 | AT4G01630.1 | 56.122 | 98 | 42 | 1 | 104 | 200 | 152 | 249 | 2.25e-32 | 117 |
| Msa0872100 | AT3G03220.1 | 34.328 | 201 | 117 | 3 | 5 | 205 | 78 | 263 | 2.18e-31 | 115 |
| Msa0872100 | AT4G38210.1 | 51.961 | 102 | 49 | 0 | 104 | 205 | 153 | 254 | 1.27e-30 | 113 |
| Msa0872100 | AT1G69530.4 | 55.882 | 102 | 15 | 1 | 104 | 205 | 148 | 219 | 3.26e-30 | 111 |
| Msa0872100 | AT3G15370.1 | 50.000 | 106 | 50 | 2 | 104 | 206 | 147 | 252 | 9.73e-29 | 108 |
| Msa0872100 | AT1G69530.5 | 72.857 | 70 | 17 | 1 | 104 | 173 | 148 | 215 | 1.29e-28 | 107 |
| Msa0872100 | AT3G15370.2 | 50.000 | 106 | 50 | 2 | 104 | 206 | 177 | 282 | 1.35e-28 | 108 |
| Msa0872100 | AT1G12560.1 | 53.061 | 98 | 45 | 1 | 104 | 200 | 158 | 255 | 1.80e-27 | 105 |
| Msa0872100 | AT5G39270.1 | 47.000 | 100 | 53 | 0 | 104 | 203 | 177 | 276 | 2.92e-27 | 105 |
| Msa0872100 | AT5G39290.1 | 45.000 | 100 | 55 | 0 | 104 | 203 | 177 | 276 | 5.70e-26 | 101 |
| Msa0872100 | AT1G62980.1 | 46.610 | 118 | 59 | 2 | 84 | 200 | 136 | 250 | 1.53e-25 | 100 |
| Msa0872100 | AT5G39260.1 | 46.000 | 100 | 54 | 0 | 104 | 203 | 160 | 259 | 3.64e-24 | 96.7 |
| Msa0872100 | AT5G39300.1 | 42.000 | 100 | 58 | 0 | 104 | 203 | 174 | 273 | 1.10e-23 | 95.5 |
| Msa0872100 | AT5G39280.1 | 42.000 | 100 | 58 | 0 | 104 | 203 | 173 | 272 | 1.18e-23 | 95.5 |
| Msa0872100 | AT5G39310.1 | 43.564 | 101 | 56 | 1 | 104 | 203 | 209 | 309 | 5.37e-22 | 91.7 |
| Msa0872100 | AT5G07930.1 | 50.000 | 70 | 32 | 2 | 37 | 105 | 148 | 215 | 1.21e-14 | 71.2 |
| Msa0872100 | AT5G07930.2 | 50.000 | 70 | 32 | 2 | 37 | 105 | 148 | 215 | 1.35e-14 | 70.9 |
| Msa0872100 | AT5G07930.3 | 50.000 | 70 | 32 | 2 | 37 | 105 | 148 | 215 | 1.57e-14 | 70.9 |
Find 52 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTACCTATTGATTTC+AGG | 0.191846 | 6_1:-7422469 | Msa0872100:intron |
| AGATAAGTTGCTGGCTTTCT+TGG | 0.283783 | 6_1:-7422564 | Msa0872100:CDS |
| TCTAGTCCTTGAACCTTTGA+TGG | 0.309672 | 6_1:+7421897 | None:intergenic |
| GCCCCACCCAGTTGGTCCTT+TGG | 0.320692 | 6_1:-7421754 | Msa0872100:CDS |
| CAAGGAATTGGGGACTAAAT+TGG | 0.331859 | 6_1:-7421861 | Msa0872100:CDS |
| GGCAAGCCATGTCAAGGAAT+TGG | 0.336529 | 6_1:-7421873 | Msa0872100:CDS |
| GCAAGCCATGTCAAGGAATT+GGG | 0.340806 | 6_1:-7421872 | Msa0872100:CDS |
| TGAAATCAATAGGTAAATAA+AGG | 0.382318 | 6_1:+7422471 | None:intergenic |
| AAATTTCTTCAGACAACCTC+TGG | 0.385844 | 6_1:-7422285 | Msa0872100:CDS |
| CAGAGTAACTCTTATTTGAA+TGG | 0.388733 | 6_1:-7421838 | Msa0872100:CDS |
| TTAGTTCTTGTGACTAATGT+TGG | 0.397492 | 6_1:-7421946 | Msa0872100:CDS |
| GGTTTGTCCAAAGGACCAAC+TGG | 0.413288 | 6_1:+7421747 | None:intergenic |
| TTTGTAGTCACCACTGGTAA+TGG | 0.425157 | 6_1:-7421802 | Msa0872100:CDS |
| AAAAGTACTTTCTTCACCAT+TGG | 0.446516 | 6_1:+7422505 | None:intergenic |
| GCAGTGTACCTGAAATCAAT+AGG | 0.449107 | 6_1:+7422461 | None:intergenic |
| TCAAAGGTTCAAGGACTAGA+TGG | 0.459280 | 6_1:-7421894 | Msa0872100:CDS |
| GGAATAAGGTTGACAATCAA+TGG | 0.468109 | 6_1:-7421985 | Msa0872100:CDS |
| GTGACTAATGTTGGAGGTGC+AGG | 0.476012 | 6_1:-7421937 | Msa0872100:CDS |
| TAAGTTGCTGGCTTTCTTGG+AGG | 0.476379 | 6_1:-7422561 | Msa0872100:CDS |
| ATGGAACACCGTCTTTCTCA+TGG | 0.480858 | 6_1:-7423016 | Msa0872100:CDS |
| GTACAGTCGAGATAAGTTGC+TGG | 0.481290 | 6_1:-7422573 | Msa0872100:intron |
| CTTTCATTTGTAGTCACCAC+TGG | 0.482315 | 6_1:-7421808 | Msa0872100:CDS |
| CTGTAGCCATCAAAGGTTCA+AGG | 0.485843 | 6_1:-7421903 | Msa0872100:CDS |
| TCCAAAGGACCAACTGGGTG+GGG | 0.487484 | 6_1:+7421753 | None:intergenic |
| GTTCTTGTGACTAATGTTGG+AGG | 0.514997 | 6_1:-7421943 | Msa0872100:CDS |
| TTAATGTTGCCCCACCCAGT+TGG | 0.531923 | 6_1:-7421762 | Msa0872100:CDS |
| TTTAAAGGGTTGGTTAGTAG+AGG | 0.543847 | 6_1:+7421707 | None:intergenic |
| TGGAACACCGTCTTTCTCAT+GGG | 0.545074 | 6_1:-7423015 | Msa0872100:CDS |
| TCCTTTGGACAAACCTACAC+TGG | 0.547722 | 6_1:-7421739 | Msa0872100:CDS |
| TCACTAATCACGAGGCAGCT+TGG | 0.550404 | 6_1:-7422308 | Msa0872100:CDS |
| GAGGAACTGCCTTCCAGTGT+AGG | 0.551003 | 6_1:+7421726 | None:intergenic |
| GTCCAAAGGACCAACTGGGT+GGG | 0.563335 | 6_1:+7421752 | None:intergenic |
| AATTTCTTCAGACAACCTCT+GGG | 0.568749 | 6_1:-7422284 | Msa0872100:CDS |
| TAGTCCCCAATTCCTTGACA+TGG | 0.570799 | 6_1:+7421867 | None:intergenic |
| TGCAGAACTGAGTTAAACAA+AGG | 0.578247 | 6_1:-7422348 | Msa0872100:intron |
| TCCAGTGTAGGTTTGTCCAA+AGG | 0.584012 | 6_1:+7421738 | None:intergenic |
| CATCCACACAAAACGACCAC+GGG | 0.584642 | 6_1:+7422985 | None:intergenic |
| GTGCATTCTGTAGCCATCAA+AGG | 0.587053 | 6_1:-7421910 | Msa0872100:CDS |
| TCTCATGGGTTTAGATCCCG+TGG | 0.611878 | 6_1:-7423001 | Msa0872100:CDS |
| CTAGATGGCAAGCCATGTCA+AGG | 0.612177 | 6_1:-7421879 | Msa0872100:CDS |
| TGTCCAAAGGACCAACTGGG+TGG | 0.615300 | 6_1:+7421751 | None:intergenic |
| GTGTTCCCACTTCTTCCCAG+AGG | 0.617327 | 6_1:+7422269 | None:intergenic |
| CAAGCCATGTCAAGGAATTG+GGG | 0.622367 | 6_1:-7421871 | Msa0872100:CDS |
| GATGAGGAAGGAAGTACGCA+AGG | 0.626082 | 6_1:-7422966 | Msa0872100:CDS |
| TTGGACAAACCTACACTGGA+AGG | 0.627049 | 6_1:-7421735 | Msa0872100:CDS |
| AATGCTATAGATCAAGCCAA+TGG | 0.640448 | 6_1:-7422521 | Msa0872100:CDS |
| TCATCCACACAAAACGACCA+CGG | 0.643729 | 6_1:+7422984 | None:intergenic |
| ATCTAAACCCATGAGAAAGA+CGG | 0.653640 | 6_1:+7423008 | None:intergenic |
| GTTTGTCCAAAGGACCAACT+GGG | 0.667033 | 6_1:+7421748 | None:intergenic |
| GTGATTAGTGAAATTCACAA+AGG | 0.687711 | 6_1:+7422320 | None:intergenic |
| TGTGAATTTCACTAATCACG+AGG | 0.704914 | 6_1:-7422316 | Msa0872100:CDS |
| AATACTATGACCATTACCAG+TGG | 0.725625 | 6_1:+7421792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTTATTCTACTTTA+TGG | - | chr6_1:7422066-7422085 | Msa0872100:intron | 15.0% |
| !!! | TTTTTAGTTATTCTACTTTA+TGG | - | chr6_1:7422066-7422085 | Msa0872100:intron | 15.0% |
| !! | TTAAAGAAGGAATATATGAA+AGG | + | chr6_1:7422015-7422034 | None:intergenic | 20.0% |
| !! | AAAATAAATGCACATAATGA+AGG | + | chr6_1:7422050-7422069 | None:intergenic | 20.0% |
| !! | TGAAATCAATAGGTAAATAA+AGG | + | chr6_1:7422268-7422287 | None:intergenic | 20.0% |
| !!! | TTTATTTACCTATTGATTTC+AGG | - | chr6_1:7422267-7422286 | Msa0872100:intron | 20.0% |
| !!! | ATAATCTTTTACTACTTGTT+TGG | - | chr6_1:7422661-7422680 | Msa0872100:intron | 20.0% |
| !! | TTAAAGAAGGAATATATGAA+AGG | + | chr6_1:7422015-7422034 | None:intergenic | 20.0% |
| !! | AAAATAAATGCACATAATGA+AGG | + | chr6_1:7422050-7422069 | None:intergenic | 20.0% |
| !! | TGAAATCAATAGGTAAATAA+AGG | + | chr6_1:7422268-7422287 | None:intergenic | 20.0% |
| !!! | TTTATTTACCTATTGATTTC+AGG | - | chr6_1:7422267-7422286 | Msa0872100:intron | 20.0% |
| !!! | ATAATCTTTTACTACTTGTT+TGG | - | chr6_1:7422661-7422680 | Msa0872100:intron | 20.0% |
| ! | CATATATACGAATATTTGCT+AGG | + | chr6_1:7421983-7422002 | None:intergenic | 25.0% |
| !!! | ACTGCTTTTAAAATTTAAGC+TGG | - | chr6_1:7422095-7422114 | Msa0872100:intron | 25.0% |
| ! | TCATTCATTAATCAACTTGT+TGG | - | chr6_1:7422141-7422160 | Msa0872100:intron | 25.0% |
| !! | TCTAGTGATTGAAGTTATTT+TGG | + | chr6_1:7422300-7422319 | None:intergenic | 25.0% |
| ! | AATTACCTTCTATAAACAAC+AGG | + | chr6_1:7422503-7422522 | None:intergenic | 25.0% |
| ! | ATGACTATGTAAGTGTAATT+TGG | - | chr6_1:7422626-7422645 | Msa0872100:intron | 25.0% |
| ! | TGACTATGTAAGTGTAATTT+GGG | - | chr6_1:7422627-7422646 | Msa0872100:intron | 25.0% |
| !! | AAGAAAAAAAGTTAGCTTCA+TGG | + | chr6_1:7422687-7422706 | None:intergenic | 25.0% |
| ! | CATATATACGAATATTTGCT+AGG | + | chr6_1:7421983-7422002 | None:intergenic | 25.0% |
| !!! | ACTGCTTTTAAAATTTAAGC+TGG | - | chr6_1:7422095-7422114 | Msa0872100:intron | 25.0% |
| ! | TCATTCATTAATCAACTTGT+TGG | - | chr6_1:7422141-7422160 | Msa0872100:intron | 25.0% |
| !! | TCTAGTGATTGAAGTTATTT+TGG | + | chr6_1:7422300-7422319 | None:intergenic | 25.0% |
| ! | AATTACCTTCTATAAACAAC+AGG | + | chr6_1:7422503-7422522 | None:intergenic | 25.0% |
| ! | ATGACTATGTAAGTGTAATT+TGG | - | chr6_1:7422626-7422645 | Msa0872100:intron | 25.0% |
| ! | TGACTATGTAAGTGTAATTT+GGG | - | chr6_1:7422627-7422646 | Msa0872100:intron | 25.0% |
| !! | AAGAAAAAAAGTTAGCTTCA+TGG | + | chr6_1:7422687-7422706 | None:intergenic | 25.0% |
| ! | GATCACAAATATGTTTTGCA+TGG | + | chr6_1:7421868-7421887 | None:intergenic | 30.0% |
| CAAAAATGGTGAAGAAACAA+CGG | - | chr6_1:7421940-7421959 | Msa0872100:CDS | 30.0% | |
| ! | GAGAAAGTGCATATTAAAGA+AGG | + | chr6_1:7422028-7422047 | None:intergenic | 30.0% |
| !! | AAAAGTACTTTCTTCACCAT+TGG | + | chr6_1:7422234-7422253 | None:intergenic | 30.0% |
| GTGATTAGTGAAATTCACAA+AGG | + | chr6_1:7422419-7422438 | None:intergenic | 30.0% | |
| TCTATAAACAACAGGAACAA+TGG | + | chr6_1:7422495-7422514 | None:intergenic | 30.0% | |
| ! | TTGTTCCTGTTGTTTATAGA+AGG | - | chr6_1:7422495-7422514 | Msa0872100:CDS | 30.0% |
| TCACATATTGTTAAGGGTAA+AGG | + | chr6_1:7422547-7422566 | None:intergenic | 30.0% | |
| TCCACTTCACATATTGTTAA+GGG | + | chr6_1:7422553-7422572 | None:intergenic | 30.0% | |
| ATCCACTTCACATATTGTTA+AGG | + | chr6_1:7422554-7422573 | None:intergenic | 30.0% | |
| !! | ATGCATGCTTTTTGATTGAA+GGG | - | chr6_1:7422708-7422727 | Msa0872100:intron | 30.0% |
| ! | TTAGTTCTTGTGACTAATGT+TGG | - | chr6_1:7422790-7422809 | Msa0872100:intron | 30.0% |
| ! | CAGAGTAACTCTTATTTGAA+TGG | - | chr6_1:7422898-7422917 | Msa0872100:intron | 30.0% |
| ! | GATCACAAATATGTTTTGCA+TGG | + | chr6_1:7421868-7421887 | None:intergenic | 30.0% |
| CAAAAATGGTGAAGAAACAA+CGG | - | chr6_1:7421940-7421959 | Msa0872100:CDS | 30.0% | |
| ! | GAGAAAGTGCATATTAAAGA+AGG | + | chr6_1:7422028-7422047 | None:intergenic | 30.0% |
| !! | AAAAGTACTTTCTTCACCAT+TGG | + | chr6_1:7422234-7422253 | None:intergenic | 30.0% |
| GTGATTAGTGAAATTCACAA+AGG | + | chr6_1:7422419-7422438 | None:intergenic | 30.0% | |
| TCTATAAACAACAGGAACAA+TGG | + | chr6_1:7422495-7422514 | None:intergenic | 30.0% | |
| ! | TTGTTCCTGTTGTTTATAGA+AGG | - | chr6_1:7422495-7422514 | Msa0872100:CDS | 30.0% |
| TCACATATTGTTAAGGGTAA+AGG | + | chr6_1:7422547-7422566 | None:intergenic | 30.0% | |
| TCCACTTCACATATTGTTAA+GGG | + | chr6_1:7422553-7422572 | None:intergenic | 30.0% | |
| ATCCACTTCACATATTGTTA+AGG | + | chr6_1:7422554-7422573 | None:intergenic | 30.0% | |
| !! | ATGCATGCTTTTTGATTGAA+GGG | - | chr6_1:7422708-7422727 | Msa0872100:intron | 30.0% |
| ! | TTAGTTCTTGTGACTAATGT+TGG | - | chr6_1:7422790-7422809 | Msa0872100:intron | 30.0% |
| ! | CAGAGTAACTCTTATTTGAA+TGG | - | chr6_1:7422898-7422917 | Msa0872100:intron | 30.0% |
| ATCTAAACCCATGAGAAAGA+CGG | + | chr6_1:7421731-7421750 | None:intergenic | 35.0% | |
| ! | AAATATGTTTTGCATGGCGA+TGG | + | chr6_1:7421862-7421881 | None:intergenic | 35.0% |
| TGTCATAAGAAGAAGAACAG+TGG | - | chr6_1:7421890-7421909 | Msa0872100:CDS | 35.0% | |
| !! | TCTTCACCATTTTTGTGAAC+CGG | + | chr6_1:7421935-7421954 | None:intergenic | 35.0% |
| ! | GCTTGATCTATAGCATTTTC+AGG | + | chr6_1:7422212-7422231 | None:intergenic | 35.0% |
| AATGCTATAGATCAAGCCAA+TGG | - | chr6_1:7422215-7422234 | Msa0872100:intron | 35.0% | |
| TGCAGAACTGAGTTAAACAA+AGG | - | chr6_1:7422388-7422407 | Msa0872100:intron | 35.0% | |
| TGTGAATTTCACTAATCACG+AGG | - | chr6_1:7422420-7422439 | Msa0872100:intron | 35.0% | |
| AAATTTCTTCAGACAACCTC+TGG | - | chr6_1:7422451-7422470 | Msa0872100:intron | 35.0% | |
| AATTTCTTCAGACAACCTCT+GGG | - | chr6_1:7422452-7422471 | Msa0872100:intron | 35.0% | |
| ACCCTTAACAATATGTGAAG+TGG | - | chr6_1:7422549-7422568 | Msa0872100:CDS | 35.0% | |
| !! | CATGCATGCTTTTTGATTGA+AGG | - | chr6_1:7422707-7422726 | Msa0872100:intron | 35.0% |
| !! | TGCTTTTTGATTGAAGGGTA+AGG | - | chr6_1:7422713-7422732 | Msa0872100:intron | 35.0% |
| GTAGAAAAAGAGGTGGAATA+AGG | - | chr6_1:7422737-7422756 | Msa0872100:intron | 35.0% | |
| GGAATAAGGTTGACAATCAA+TGG | - | chr6_1:7422751-7422770 | Msa0872100:intron | 35.0% | |
| AATACTATGACCATTACCAG+TGG | + | chr6_1:7422947-7422966 | None:intergenic | 35.0% | |
| ATCTAAACCCATGAGAAAGA+CGG | + | chr6_1:7421731-7421750 | None:intergenic | 35.0% | |
| ! | AAATATGTTTTGCATGGCGA+TGG | + | chr6_1:7421862-7421881 | None:intergenic | 35.0% |
| TGTCATAAGAAGAAGAACAG+TGG | - | chr6_1:7421890-7421909 | Msa0872100:CDS | 35.0% | |
| !! | TCTTCACCATTTTTGTGAAC+CGG | + | chr6_1:7421935-7421954 | None:intergenic | 35.0% |
| ! | GCTTGATCTATAGCATTTTC+AGG | + | chr6_1:7422212-7422231 | None:intergenic | 35.0% |
| AATGCTATAGATCAAGCCAA+TGG | - | chr6_1:7422215-7422234 | Msa0872100:intron | 35.0% | |
| TGCAGAACTGAGTTAAACAA+AGG | - | chr6_1:7422388-7422407 | Msa0872100:intron | 35.0% | |
| TGTGAATTTCACTAATCACG+AGG | - | chr6_1:7422420-7422439 | Msa0872100:intron | 35.0% | |
| AAATTTCTTCAGACAACCTC+TGG | - | chr6_1:7422451-7422470 | Msa0872100:intron | 35.0% | |
| AATTTCTTCAGACAACCTCT+GGG | - | chr6_1:7422452-7422471 | Msa0872100:intron | 35.0% | |
| ACCCTTAACAATATGTGAAG+TGG | - | chr6_1:7422549-7422568 | Msa0872100:CDS | 35.0% | |
| !! | CATGCATGCTTTTTGATTGA+AGG | - | chr6_1:7422707-7422726 | Msa0872100:intron | 35.0% |
| !! | TGCTTTTTGATTGAAGGGTA+AGG | - | chr6_1:7422713-7422732 | Msa0872100:intron | 35.0% |
| GTAGAAAAAGAGGTGGAATA+AGG | - | chr6_1:7422737-7422756 | Msa0872100:intron | 35.0% | |
| GGAATAAGGTTGACAATCAA+TGG | - | chr6_1:7422751-7422770 | Msa0872100:intron | 35.0% | |
| AATACTATGACCATTACCAG+TGG | + | chr6_1:7422947-7422966 | None:intergenic | 35.0% | |
| CATAAGAAGAAGAACAGTGG+AGG | - | chr6_1:7421893-7421912 | Msa0872100:CDS | 40.0% | |
| ! | TTTTTGTGAACCGGAATCAC+AGG | + | chr6_1:7421926-7421945 | None:intergenic | 40.0% |
| GTGATTCCGGTTCACAAAAA+TGG | - | chr6_1:7421926-7421945 | Msa0872100:CDS | 40.0% | |
| !! | AGATAAGTTGCTGGCTTTCT+TGG | - | chr6_1:7422172-7422191 | Msa0872100:intron | 40.0% |
| GCAGTGTACCTGAAATCAAT+AGG | + | chr6_1:7422278-7422297 | None:intergenic | 40.0% | |
| AGGGTAAGGTGTAGAAAAAG+AGG | - | chr6_1:7422727-7422746 | Msa0872100:intron | 40.0% | |
| GTAAGGTGTAGAAAAAGAGG+TGG | - | chr6_1:7422730-7422749 | Msa0872100:intron | 40.0% | |
| GTTCTTGTGACTAATGTTGG+AGG | - | chr6_1:7422793-7422812 | Msa0872100:intron | 40.0% | |
| TCTAGTCCTTGAACCTTTGA+TGG | + | chr6_1:7422842-7422861 | None:intergenic | 40.0% | |
| TCAAAGGTTCAAGGACTAGA+TGG | - | chr6_1:7422842-7422861 | Msa0872100:intron | 40.0% | |
| CAAGGAATTGGGGACTAAAT+TGG | - | chr6_1:7422875-7422894 | Msa0872100:intron | 40.0% | |
| CTTTCATTTGTAGTCACCAC+TGG | - | chr6_1:7422928-7422947 | Msa0872100:intron | 40.0% | |
| TTTGTAGTCACCACTGGTAA+TGG | - | chr6_1:7422934-7422953 | Msa0872100:CDS | 40.0% | |
| CATAAGAAGAAGAACAGTGG+AGG | - | chr6_1:7421893-7421912 | Msa0872100:CDS | 40.0% | |
| ! | TTTTTGTGAACCGGAATCAC+AGG | + | chr6_1:7421926-7421945 | None:intergenic | 40.0% |
| GTGATTCCGGTTCACAAAAA+TGG | - | chr6_1:7421926-7421945 | Msa0872100:CDS | 40.0% | |
| !! | AGATAAGTTGCTGGCTTTCT+TGG | - | chr6_1:7422172-7422191 | Msa0872100:intron | 40.0% |
| GCAGTGTACCTGAAATCAAT+AGG | + | chr6_1:7422278-7422297 | None:intergenic | 40.0% | |
| AGGGTAAGGTGTAGAAAAAG+AGG | - | chr6_1:7422727-7422746 | Msa0872100:intron | 40.0% | |
| GTAAGGTGTAGAAAAAGAGG+TGG | - | chr6_1:7422730-7422749 | Msa0872100:intron | 40.0% | |
| GTTCTTGTGACTAATGTTGG+AGG | - | chr6_1:7422793-7422812 | Msa0872100:intron | 40.0% | |
| TCTAGTCCTTGAACCTTTGA+TGG | + | chr6_1:7422842-7422861 | None:intergenic | 40.0% | |
| TCAAAGGTTCAAGGACTAGA+TGG | - | chr6_1:7422842-7422861 | Msa0872100:intron | 40.0% | |
| CAAGGAATTGGGGACTAAAT+TGG | - | chr6_1:7422875-7422894 | Msa0872100:intron | 40.0% | |
| CTTTCATTTGTAGTCACCAC+TGG | - | chr6_1:7422928-7422947 | Msa0872100:intron | 40.0% | |
| TTTGTAGTCACCACTGGTAA+TGG | - | chr6_1:7422934-7422953 | Msa0872100:CDS | 40.0% | |
| ATGGAACACCGTCTTTCTCA+TGG | - | chr6_1:7421720-7421739 | Msa0872100:CDS | 45.0% | |
| TGGAACACCGTCTTTCTCAT+GGG | - | chr6_1:7421721-7421740 | Msa0872100:CDS | 45.0% | |
| TCATCCACACAAAACGACCA+CGG | + | chr6_1:7421755-7421774 | None:intergenic | 45.0% | |
| ! | TCGTTTTGTGTGGATGAGGA+AGG | - | chr6_1:7421758-7421777 | Msa0872100:CDS | 45.0% |
| AAGAAGAAGAACAGTGGAGG+TGG | - | chr6_1:7421896-7421915 | Msa0872100:CDS | 45.0% | |
| ! | AGGTGGTTTTCCTGTGATTC+CGG | - | chr6_1:7421913-7421932 | Msa0872100:CDS | 45.0% |
| GTACAGTCGAGATAAGTTGC+TGG | - | chr6_1:7422163-7422182 | Msa0872100:intron | 45.0% | |
| !! | TAAGTTGCTGGCTTTCTTGG+AGG | - | chr6_1:7422175-7422194 | Msa0872100:intron | 45.0% |
| GTGCATTCTGTAGCCATCAA+AGG | - | chr6_1:7422826-7422845 | Msa0872100:intron | 45.0% | |
| CTGTAGCCATCAAAGGTTCA+AGG | - | chr6_1:7422833-7422852 | Msa0872100:intron | 45.0% | |
| GCAAGCCATGTCAAGGAATT+GGG | - | chr6_1:7422864-7422883 | Msa0872100:intron | 45.0% | |
| CAAGCCATGTCAAGGAATTG+GGG | - | chr6_1:7422865-7422884 | Msa0872100:intron | 45.0% | |
| TAGTCCCCAATTCCTTGACA+TGG | + | chr6_1:7422872-7422891 | None:intergenic | 45.0% | |
| GTTTGTCCAAAGGACCAACT+GGG | + | chr6_1:7422991-7423010 | None:intergenic | 45.0% | |
| TCCTTTGGACAAACCTACAC+TGG | - | chr6_1:7422997-7423016 | Msa0872100:CDS | 45.0% | |
| TCCAGTGTAGGTTTGTCCAA+AGG | + | chr6_1:7423001-7423020 | None:intergenic | 45.0% | |
| TTGGACAAACCTACACTGGA+AGG | - | chr6_1:7423001-7423020 | Msa0872100:CDS | 45.0% | |
| ATGGAACACCGTCTTTCTCA+TGG | - | chr6_1:7421720-7421739 | Msa0872100:CDS | 45.0% | |
| TGGAACACCGTCTTTCTCAT+GGG | - | chr6_1:7421721-7421740 | Msa0872100:CDS | 45.0% | |
| TCATCCACACAAAACGACCA+CGG | + | chr6_1:7421755-7421774 | None:intergenic | 45.0% | |
| ! | TCGTTTTGTGTGGATGAGGA+AGG | - | chr6_1:7421758-7421777 | Msa0872100:CDS | 45.0% |
| AAGAAGAAGAACAGTGGAGG+TGG | - | chr6_1:7421896-7421915 | Msa0872100:CDS | 45.0% | |
| ! | AGGTGGTTTTCCTGTGATTC+CGG | - | chr6_1:7421913-7421932 | Msa0872100:CDS | 45.0% |
| GTACAGTCGAGATAAGTTGC+TGG | - | chr6_1:7422163-7422182 | Msa0872100:intron | 45.0% | |
| !! | TAAGTTGCTGGCTTTCTTGG+AGG | - | chr6_1:7422175-7422194 | Msa0872100:intron | 45.0% |
| GTGCATTCTGTAGCCATCAA+AGG | - | chr6_1:7422826-7422845 | Msa0872100:intron | 45.0% | |
| CTGTAGCCATCAAAGGTTCA+AGG | - | chr6_1:7422833-7422852 | Msa0872100:intron | 45.0% | |
| GCAAGCCATGTCAAGGAATT+GGG | - | chr6_1:7422864-7422883 | Msa0872100:intron | 45.0% | |
| CAAGCCATGTCAAGGAATTG+GGG | - | chr6_1:7422865-7422884 | Msa0872100:intron | 45.0% | |
| TAGTCCCCAATTCCTTGACA+TGG | + | chr6_1:7422872-7422891 | None:intergenic | 45.0% | |
| GTTTGTCCAAAGGACCAACT+GGG | + | chr6_1:7422991-7423010 | None:intergenic | 45.0% | |
| TCCTTTGGACAAACCTACAC+TGG | - | chr6_1:7422997-7423016 | Msa0872100:CDS | 45.0% | |
| TCCAGTGTAGGTTTGTCCAA+AGG | + | chr6_1:7423001-7423020 | None:intergenic | 45.0% | |
| TTGGACAAACCTACACTGGA+AGG | - | chr6_1:7423001-7423020 | Msa0872100:CDS | 45.0% | |
| TCTCATGGGTTTAGATCCCG+TGG | - | chr6_1:7421735-7421754 | Msa0872100:CDS | 50.0% | |
| CATCCACACAAAACGACCAC+GGG | + | chr6_1:7421754-7421773 | None:intergenic | 50.0% | |
| !! | GTGGTCGTTTTGTGTGGATG+AGG | - | chr6_1:7421754-7421773 | Msa0872100:CDS | 50.0% |
| ! | GATGAGGAAGGAAGTACGCA+AGG | - | chr6_1:7421770-7421789 | Msa0872100:CDS | 50.0% |
| TCACTAATCACGAGGCAGCT+TGG | - | chr6_1:7422428-7422447 | Msa0872100:intron | 50.0% | |
| ! | AGACAACCTCTGGGAAGAAG+TGG | - | chr6_1:7422461-7422480 | Msa0872100:intron | 50.0% |
| ! | GACAACCTCTGGGAAGAAGT+GGG | - | chr6_1:7422462-7422481 | Msa0872100:intron | 50.0% |
| ! | GTGACTAATGTTGGAGGTGC+AGG | - | chr6_1:7422799-7422818 | Msa0872100:intron | 50.0% |
| CTAGATGGCAAGCCATGTCA+AGG | - | chr6_1:7422857-7422876 | Msa0872100:intron | 50.0% | |
| GGCAAGCCATGTCAAGGAAT+TGG | - | chr6_1:7422863-7422882 | Msa0872100:intron | 50.0% | |
| TTAATGTTGCCCCACCCAGT+TGG | - | chr6_1:7422974-7422993 | Msa0872100:CDS | 50.0% | |
| GGTTTGTCCAAAGGACCAAC+TGG | + | chr6_1:7422992-7423011 | None:intergenic | 50.0% | |
| TCTCATGGGTTTAGATCCCG+TGG | - | chr6_1:7421735-7421754 | Msa0872100:CDS | 50.0% | |
| CATCCACACAAAACGACCAC+GGG | + | chr6_1:7421754-7421773 | None:intergenic | 50.0% | |
| !! | GTGGTCGTTTTGTGTGGATG+AGG | - | chr6_1:7421754-7421773 | Msa0872100:CDS | 50.0% |
| ! | GATGAGGAAGGAAGTACGCA+AGG | - | chr6_1:7421770-7421789 | Msa0872100:CDS | 50.0% |
| TCACTAATCACGAGGCAGCT+TGG | - | chr6_1:7422428-7422447 | Msa0872100:intron | 50.0% | |
| ! | AGACAACCTCTGGGAAGAAG+TGG | - | chr6_1:7422461-7422480 | Msa0872100:intron | 50.0% |
| ! | GACAACCTCTGGGAAGAAGT+GGG | - | chr6_1:7422462-7422481 | Msa0872100:intron | 50.0% |
| ! | GTGACTAATGTTGGAGGTGC+AGG | - | chr6_1:7422799-7422818 | Msa0872100:intron | 50.0% |
| CTAGATGGCAAGCCATGTCA+AGG | - | chr6_1:7422857-7422876 | Msa0872100:intron | 50.0% | |
| GGCAAGCCATGTCAAGGAAT+TGG | - | chr6_1:7422863-7422882 | Msa0872100:intron | 50.0% | |
| TTAATGTTGCCCCACCCAGT+TGG | - | chr6_1:7422974-7422993 | Msa0872100:CDS | 50.0% | |
| GGTTTGTCCAAAGGACCAAC+TGG | + | chr6_1:7422992-7423011 | None:intergenic | 50.0% | |
| !! | GATCCCGTGGTCGTTTTGTG+TGG | - | chr6_1:7421748-7421767 | Msa0872100:CDS | 55.0% |
| GTGTTCCCACTTCTTCCCAG+AGG | + | chr6_1:7422470-7422489 | None:intergenic | 55.0% | |
| TCCAAAGGACCAACTGGGTG+GGG | + | chr6_1:7422986-7423005 | None:intergenic | 55.0% | |
| GTCCAAAGGACCAACTGGGT+GGG | + | chr6_1:7422987-7423006 | None:intergenic | 55.0% | |
| TGTCCAAAGGACCAACTGGG+TGG | + | chr6_1:7422988-7423007 | None:intergenic | 55.0% | |
| GAGGAACTGCCTTCCAGTGT+AGG | + | chr6_1:7423013-7423032 | None:intergenic | 55.0% | |
| !! | GATCCCGTGGTCGTTTTGTG+TGG | - | chr6_1:7421748-7421767 | Msa0872100:CDS | 55.0% |
| GTGTTCCCACTTCTTCCCAG+AGG | + | chr6_1:7422470-7422489 | None:intergenic | 55.0% | |
| TCCAAAGGACCAACTGGGTG+GGG | + | chr6_1:7422986-7423005 | None:intergenic | 55.0% | |
| GTCCAAAGGACCAACTGGGT+GGG | + | chr6_1:7422987-7423006 | None:intergenic | 55.0% | |
| TGTCCAAAGGACCAACTGGG+TGG | + | chr6_1:7422988-7423007 | None:intergenic | 55.0% | |
| GAGGAACTGCCTTCCAGTGT+AGG | + | chr6_1:7423013-7423032 | None:intergenic | 55.0% | |
| GCCCCACCCAGTTGGTCCTT+TGG | - | chr6_1:7422982-7423001 | Msa0872100:CDS | 65.0% | |
| GCCCCACCCAGTTGGTCCTT+TGG | - | chr6_1:7422982-7423001 | Msa0872100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 7421720 | 7423038 | 7421720 | ID=Msa0872100;Name=Msa0872100 |
| chr6_1 | mRNA | 7421720 | 7423038 | 7421720 | ID=Msa0872100-mRNA-1;Parent=Msa0872100;Name=Msa0872100-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|4|0|207 |
| chr6_1 | exon | 7422932 | 7423038 | 7422932 | ID=Msa0872100-mRNA-1:exon:2242;Parent=Msa0872100-mRNA-1 |
| chr6_1 | exon | 7422470 | 7422589 | 7422470 | ID=Msa0872100-mRNA-1:exon:2241;Parent=Msa0872100-mRNA-1 |
| chr6_1 | exon | 7422279 | 7422365 | 7422279 | ID=Msa0872100-mRNA-1:exon:2240;Parent=Msa0872100-mRNA-1 |
| chr6_1 | exon | 7421720 | 7422029 | 7421720 | ID=Msa0872100-mRNA-1:exon:2239;Parent=Msa0872100-mRNA-1 |
| chr6_1 | CDS | 7422932 | 7423038 | 7422932 | ID=Msa0872100-mRNA-1:cds;Parent=Msa0872100-mRNA-1 |
| chr6_1 | CDS | 7422470 | 7422589 | 7422470 | ID=Msa0872100-mRNA-1:cds;Parent=Msa0872100-mRNA-1 |
| chr6_1 | CDS | 7422279 | 7422365 | 7422279 | ID=Msa0872100-mRNA-1:cds;Parent=Msa0872100-mRNA-1 |
| chr6_1 | CDS | 7421720 | 7422029 | 7421720 | ID=Msa0872100-mRNA-1:cds;Parent=Msa0872100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
