AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1017590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017590 MtrunA17_Chr7g0236861 92.448 384 18 2 1 382 1 375 0.0 681
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017590 AT4G13150.1 62.658 316 107 2 65 380 39 343 9.42e-137 394
Msa1017590 AT4G13150.3 57.588 257 98 2 65 321 39 284 2.60e-98 294
Msa1017590 AT4G13150.2 58.468 248 92 2 65 312 39 275 1.46e-96 289
Msa1017590 AT4G13150.5 56.332 229 89 2 65 293 39 256 6.15e-84 256
Msa1017590 AT4G13150.4 56.332 229 89 2 65 293 39 256 6.15e-84 256

Find 106 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGAGGCTTTAAATATT+TGG 0.131301 7_1:+36866862 Msa1017590:CDS
CAACCGTTCTATGGGTTTAT+TGG 0.170728 7_1:+36867078 Msa1017590:CDS
CTCATAGGTTGTTTGCAAAT+TGG 0.186446 7_1:+36864543 Msa1017590:CDS
CAAAAGTATGGCAATCTTAT+TGG 0.194129 7_1:+36867805 Msa1017590:CDS
TCATTACCTATAACAGAAAT+TGG 0.225358 7_1:-36868660 None:intergenic
GAAAAGCTTCCCCAAGTAAA+AGG 0.226285 7_1:-36867210 None:intergenic
GATCTACTTCTGGTTGCTTA+TGG 0.241388 7_1:+36866815 Msa1017590:CDS
TATGGCAATCTTATTGGTTT+TGG 0.243971 7_1:+36867811 Msa1017590:CDS
CGACAACCAATTTCTGTTAT+AGG 0.251129 7_1:+36868654 Msa1017590:three_prime_UTR
ACATCATATCAACCGTTCTA+TGG 0.263168 7_1:+36867069 Msa1017590:CDS
TCTGTTCACACTTTCCATTC+AGG 0.270300 7_1:+36868173 Msa1017590:CDS
GTTCTTTAGCTTTCCCTCAT+AGG 0.297029 7_1:+36864528 Msa1017590:CDS
CCTGCAGATGGATCTACTTC+TGG 0.300381 7_1:+36866805 Msa1017590:intron
ATTCGCCAACAGCCTATTCT+AGG 0.301647 7_1:+36866140 Msa1017590:CDS
TGAAGAGGCTTTAAATATTT+GGG 0.312257 7_1:+36866863 Msa1017590:CDS
CACACGTTTCTCACCTCTTC+AGG 0.323077 7_1:+36864576 Msa1017590:CDS
CTTATTAACAATTCCCTTTG+TGG 0.336337 7_1:+36868759 Msa1017590:three_prime_UTR
CAAGACAGAGATCCCGTTCC+TGG 0.337367 7_1:+36866067 Msa1017590:CDS
GTGACTGATAAGATCGAAAA+AGG 0.339069 7_1:-36868632 None:intergenic
TCATCATCAATGTCACTTAC+AGG 0.357041 7_1:+36864383 Msa1017590:five_prime_UTR
TGAACCCTAGCTCGTATATA+TGG 0.359915 7_1:-36868704 None:intergenic
TCACATTATTATTACCATTA+CGG 0.360639 7_1:-36868377 None:intergenic
TTCTGGTTGCTTATGGCTGC+AGG 0.373324 7_1:+36866822 Msa1017590:CDS
TTACGAGGCGTTAAAATCTA+AGG 0.373703 7_1:+36865986 Msa1017590:CDS
GCAGTTGCTCCTGTTGCTGC+TGG 0.381855 7_1:+36866209 Msa1017590:CDS
GTTGAAGCAGCCACAGCATA+TGG 0.393534 7_1:-36868485 None:intergenic
ACAGACGTTGTACAAAAGTA+TGG 0.398457 7_1:+36867793 Msa1017590:CDS
TGTTCTACAACCTCTGAGAT+TGG 0.400138 7_1:-36864480 None:intergenic
GCTATGATTGGAATTGCATT+AGG 0.402168 7_1:+36866089 Msa1017590:CDS
GAAGATGATAGGTTGGAATA+AGG 0.411006 7_1:-36864359 None:intergenic
CTTCTGCTGATGTTACTTCA+AGG 0.413521 7_1:+36867246 Msa1017590:CDS
GCAGTTGAACGATTCTCTCT+TGG 0.419870 7_1:+36867959 Msa1017590:intron
ATATGTGATCAGCTGGGAAT+AGG 0.428888 7_1:+36868307 Msa1017590:intron
AATGGCCCACATGAGAAAAC+AGG 0.436765 7_1:-36864440 None:intergenic
ATCCCGTTCCTGGCTATGAT+TGG 0.436950 7_1:+36866077 Msa1017590:CDS
ACAACCTCTGAGATTGGTTG+TGG 0.451788 7_1:-36864474 None:intergenic
CAATTTGCAAACAACCTATG+AGG 0.457657 7_1:-36864542 None:intergenic
TTCCAATCATAGCCAGGAAC+GGG 0.459338 7_1:-36866079 None:intergenic
ATACTCTTACATGGCATTCA+AGG 0.460024 7_1:-36868549 None:intergenic
ACAGGGGTTAAAGACATTGT+TGG 0.463864 7_1:-36864422 None:intergenic
TTGCTTATGGCTGCAGGTTG+CGG 0.464815 7_1:+36866828 Msa1017590:CDS
AAAGTGAAACCAGCAGCAAC+AGG 0.472516 7_1:-36866218 None:intergenic
ATATCGGCCGTTCCCTCAAA+AGG 0.477162 7_1:-36868333 None:intergenic
TCAAGTGCAGGGTATTTCTC+CGG 0.480432 7_1:+36868119 Msa1017590:intron
GTGCTTCAAATTCACCTGAA+TGG 0.488478 7_1:-36868187 None:intergenic
AGAATTGAGGTGCAAACAAA+TGG 0.492047 7_1:+36866029 Msa1017590:CDS
CATCATATCAACCGTTCTAT+GGG 0.493913 7_1:+36867070 Msa1017590:CDS
ATTAGCCATATATACGAGCT+AGG 0.497151 7_1:+36868699 Msa1017590:three_prime_UTR
ATAATTCCGCAATGTGCACC+AGG 0.498074 7_1:+36866263 Msa1017590:CDS
CTTATCTGCATATACAACTT+AGG 0.502539 7_1:-36868586 None:intergenic
TGCTACTGTCGCAACCGTAA+TGG 0.508904 7_1:+36868363 Msa1017590:CDS
ATACATTCAAGTACCACAAA+GGG 0.512103 7_1:-36868772 None:intergenic
TTCTGTCTCTCGACGGAACA+TGG 0.512776 7_1:+36867009 Msa1017590:CDS
AAAAGCTTCCCCAAGTAAAA+GGG 0.514440 7_1:-36867209 None:intergenic
CTAAACAGTCTAACAGTGAC+AGG 0.521851 7_1:-36864506 None:intergenic
CCGGACGGTGATCCTAGAAT+AGG 0.524305 7_1:-36866152 None:intergenic
TTGATGATGATGAAGATGAT+AGG 0.526847 7_1:-36864370 None:intergenic
AACAGGAGCAACTGCTGAAG+AGG 0.528098 7_1:-36866201 None:intergenic
GTGAGTATGTATGATGGTAT+TGG 0.529043 7_1:-36864337 None:intergenic
TGATGATGAAGATGATAGGT+TGG 0.536995 7_1:-36864366 None:intergenic
ACAGTAGCAAGAGCAAATAT+CGG 0.537808 7_1:-36868349 None:intergenic
CATTTGCTGAATCTTTCTCA+AGG 0.539846 7_1:+36867036 Msa1017590:CDS
ATGCTCTAAACATGAGGGTG+AGG 0.546750 7_1:+36865959 Msa1017590:CDS
ATGCAATTCCAATCATAGCC+AGG 0.548845 7_1:-36866085 None:intergenic
CAACCTCTGAGATTGGTTGT+GGG 0.557588 7_1:-36864473 None:intergenic
ATTCTGCTTCTGTAATGCAA+AGG 0.563407 7_1:-36865933 None:intergenic
TAGAATAGGCTGTTGGCGAA+TGG 0.565403 7_1:-36866138 None:intergenic
GCTCCTGCAAGAAAAGCTGT+AGG 0.567137 7_1:-36867992 None:intergenic
ATATTCTGAATACTCTTACA+TGG 0.569842 7_1:-36868558 None:intergenic
TTCTGCTGATGTTACTTCAA+GGG 0.570877 7_1:+36867247 Msa1017590:CDS
GTGCAAACAAATGGTAAAGA+GGG 0.571852 7_1:+36866038 Msa1017590:CDS
AATTTGCAAACAACCTATGA+GGG 0.573647 7_1:-36864541 None:intergenic
TGGTGTCAACAGTTAGGCAT+TGG 0.575572 7_1:+36867748 Msa1017590:intron
AGCTTGTTTAATATTTCTCG+AGG 0.575968 7_1:+36868808 Msa1017590:three_prime_UTR
GGTGCAAACAAATGGTAAAG+AGG 0.578480 7_1:+36866037 Msa1017590:CDS
GAGAAGTTAGTTACCTGAAG+AGG 0.580232 7_1:-36864589 None:intergenic
CTCCTGCAAGAAAAGCTGTA+GGG 0.587434 7_1:-36867991 None:intergenic
TTCTGACAGAATCTGTAGAC+CGG 0.587906 7_1:-36866171 None:intergenic
AATTAAATGCTCTAAACATG+AGG 0.593823 7_1:+36865953 Msa1017590:CDS
AGAACGGTTGATATGATGTA+CGG 0.594967 7_1:-36867065 None:intergenic
AGAAGAAATCATCATAAACA+AGG 0.595450 7_1:-36868869 None:intergenic
GTTAGGCATTGGTAAAGAGA+AGG 0.598947 7_1:+36867759 Msa1017590:intron
AATACATTCAAGTACCACAA+AGG 0.598968 7_1:-36868773 None:intergenic
ATTCCAATCATAGCCAGGAA+CGG 0.601656 7_1:-36866080 None:intergenic
ATTAAATGCTCTAAACATGA+GGG 0.602499 7_1:+36865954 Msa1017590:CDS
TTAGCCATATATACGAGCTA+GGG 0.605205 7_1:+36868700 Msa1017590:three_prime_UTR
GTGATCCTAGAATAGGCTGT+TGG 0.615355 7_1:-36866145 None:intergenic
TGAAGTCTCATCCAACCACA+TGG 0.622921 7_1:+36864293 Msa1017590:five_prime_UTR
CCTATTCTAGGATCACCGTC+CGG 0.623663 7_1:+36866152 Msa1017590:CDS
GACAGAATCTGTAGACCGGA+CGG 0.632980 7_1:-36866167 None:intergenic
TGTATGATGGTATTGGTGAA+AGG 0.643032 7_1:-36864330 None:intergenic
AGATACACAAGATAGAATTG+AGG 0.647008 7_1:+36866016 Msa1017590:CDS
GGTCTACAGATTCTGTCAGA+AGG 0.648359 7_1:+36866173 Msa1017590:CDS
TAGGTAATGATCAACTACAA+TGG 0.650847 7_1:+36868673 Msa1017590:three_prime_UTR
ATGGCCCACATGAGAAAACA+GGG 0.651728 7_1:-36864439 None:intergenic
GCAAGGCTTCTGTCTCTCGA+CGG 0.653198 7_1:+36867002 Msa1017590:CDS
GAAGAAATCATCATAAACAA+GGG 0.653367 7_1:-36868868 None:intergenic
GTTGTGGGAATGTTTAACAA+TGG 0.662238 7_1:-36864458 None:intergenic
AATAAGGTGAGTATGTATGA+TGG 0.662732 7_1:-36864343 None:intergenic
AGGTTGGTACGTCAATAGCA+AGG 0.665184 7_1:+36866985 Msa1017590:intron
GGGTACCCTGGTGCACATTG+CGG 0.665443 7_1:-36866269 None:intergenic
TTACCAATAAACCCATAGAA+CGG 0.665450 7_1:-36867081 None:intergenic
TAATTCCGCAATGTGCACCA+GGG 0.731402 7_1:+36866264 Msa1017590:CDS
ATTCCCACAACCAATCTCAG+AGG 0.733978 7_1:+36864470 Msa1017590:CDS
TGAGGGTGAGGAAAATTACG+AGG 0.746935 7_1:+36865971 Msa1017590:CDS
TGGCCCACATGAGAAAACAG+GGG 0.786077 7_1:-36864438 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTAAATTTTTATAAATCA+TGG - chr7_1:36865711-36865730 None:intergenic 10.0%
!! ATTAAATATCTTAAAAACAA+AGG - chr7_1:36866965-36866984 None:intergenic 10.0%
!!! TTGTTTTTAAGATATTTAAT+AGG + chr7_1:36866965-36866984 Msa1017590:intron 10.0%
!!! ATTTTATTCACAAATATTTT+TGG + chr7_1:36867725-36867744 Msa1017590:intron 10.0%
!! TAACTTTATCAAATATAAAA+GGG - chr7_1:36868041-36868060 None:intergenic 10.0%
!!! AAAATTTCAGAATTTAACTT+AGG - chr7_1:36865083-36865102 None:intergenic 15.0%
!!! AAATTTAAGTTTGAAATTCT+AGG + chr7_1:36865721-36865740 Msa1017590:intron 15.0%
!!! TTTTAAGATATTTAATAGGT+TGG + chr7_1:36866969-36866988 Msa1017590:intron 15.0%
!! ATACTTATACATAAAGATAT+GGG - chr7_1:36867874-36867893 None:intergenic 15.0%
!! TATACTTATACATAAAGATA+TGG - chr7_1:36867875-36867894 None:intergenic 15.0%
!! CTAACTTTATCAAATATAAA+AGG - chr7_1:36868042-36868061 None:intergenic 15.0%
!!! CTTTTATATTTGATAAAGTT+AGG + chr7_1:36868040-36868059 Msa1017590:intron 15.0%
!!! TTACCTTTTTTATTTTATAC+AGG + chr7_1:36868445-36868464 Msa1017590:intron 15.0%
!!! TACCTTTTTTATTTTATACA+GGG + chr7_1:36868446-36868465 Msa1017590:intron 15.0%
!! TTCAGTGTAATTATATGTAT+CGG - chr7_1:36864841-36864860 None:intergenic 20.0%
!!! AATTTTTATAAATCATGGAG+AGG - chr7_1:36865706-36865725 None:intergenic 20.0%
!!! GTCTATGTTTTATTTTTGTT+TGG + chr7_1:36865757-36865776 Msa1017590:intron 20.0%
!!! AGTTACATCAATTTTATTTG+TGG + chr7_1:36866364-36866383 Msa1017590:intron 20.0%
!! CTTATATAGAATAGAAAAAG+AGG + chr7_1:36866570-36866589 Msa1017590:intron 20.0%
!!! TTTAGTTCAGATTTATACAT+TGG + chr7_1:36867308-36867327 Msa1017590:intron 20.0%
!! TTTATCTAATGACATAAACA+AGG + chr7_1:36867351-36867370 Msa1017590:intron 20.0%
!! TTATCTAATGACATAAACAA+GGG + chr7_1:36867352-36867371 Msa1017590:intron 20.0%
!!! GTCATATTATTTTCATAACT+AGG - chr7_1:36867562-36867581 None:intergenic 20.0%
!!! TTATTCACAAATATTTTTGG+TGG + chr7_1:36867728-36867747 Msa1017590:intron 20.0%
!! TTATATTTGATAAAGTTAGG+TGG + chr7_1:36868043-36868062 Msa1017590:intron 20.0%
!! TAAAAGAAATCACATTAAGA+AGG + chr7_1:36868076-36868095 Msa1017590:intron 20.0%
!! ACTTGAAGAAAAACAATTAA+AGG - chr7_1:36868105-36868124 None:intergenic 20.0%
!! TCACATTATTATTACCATTA+CGG - chr7_1:36868380-36868399 None:intergenic 20.0%
!! TTCCCTGTATAAAATAAAAA+AGG - chr7_1:36868451-36868470 None:intergenic 20.0%
!!! TTTATTTTATACAGGGAATT+TGG + chr7_1:36868453-36868472 Msa1017590:intron 20.0%
!! AACATACCTAAATTCTAAGA+TGG + chr7_1:36864740-36864759 Msa1017590:intron 25.0%
! TTTCAAATTATTAGCAGTGT+CGG + chr7_1:36864873-36864892 Msa1017590:intron 25.0%
!!! TACTTTTTAAGCTGATTTTG+TGG + chr7_1:36865045-36865064 Msa1017590:intron 25.0%
!!! ACTTTTTAAGCTGATTTTGT+GGG + chr7_1:36865046-36865065 Msa1017590:intron 25.0%
!!! AATTCTGAAATTTTTCATGC+TGG + chr7_1:36865089-36865108 Msa1017590:intron 25.0%
! ATGAGATTAGTACTCATATT+TGG - chr7_1:36865597-36865616 None:intergenic 25.0%
!! TCAATTACAAACTTTGACTT+AGG + chr7_1:36865624-36865643 Msa1017590:intron 25.0%
! TAACAAGGAAATTACTAAGA+GGG - chr7_1:36865858-36865877 None:intergenic 25.0%
! ATAACAAGGAAATTACTAAG+AGG - chr7_1:36865859-36865878 None:intergenic 25.0%
!! AATTAAATGCTCTAAACATG+AGG + chr7_1:36865953-36865972 Msa1017590:CDS 25.0%
!! ATTAAATGCTCTAAACATGA+GGG + chr7_1:36865954-36865973 Msa1017590:CDS 25.0%
!! TTTTACTATTATAGCGACAA+AGG + chr7_1:36866663-36866682 Msa1017590:intron 25.0%
!!! TGAAGAGGCTTTAAATATTT+GGG + chr7_1:36866863-36866882 Msa1017590:CDS 25.0%
!! AAAAACTACTGATTGTTTCA+GGG + chr7_1:36867163-36867182 Msa1017590:intron 25.0%
! TATCTAATGACATAAACAAG+GGG + chr7_1:36867353-36867372 Msa1017590:intron 25.0%
! GCTTATTATATAAGTTCTCA+TGG - chr7_1:36867619-36867638 None:intergenic 25.0%
! ATATTCTGAATACTCTTACA+TGG - chr7_1:36868561-36868580 None:intergenic 25.0%
! TCATTACCTATAACAGAAAT+TGG - chr7_1:36868663-36868682 None:intergenic 25.0%
! GAAGAAATCATCATAAACAA+GGG - chr7_1:36868871-36868890 None:intergenic 25.0%
! AGAAGAAATCATCATAAACA+AGG - chr7_1:36868872-36868891 None:intergenic 25.0%
AATAAGGTGAGTATGTATGA+TGG - chr7_1:36864346-36864365 None:intergenic 30.0%
!! TTGATGATGATGAAGATGAT+AGG - chr7_1:36864373-36864392 None:intergenic 30.0%
AATTTGCAAACAACCTATGA+GGG - chr7_1:36864544-36864563 None:intergenic 30.0%
CACGTAGAAATGTTTATAAG+TGG + chr7_1:36864680-36864699 Msa1017590:intron 30.0%
GTAGAAATGTTTATAAGTGG+AGG + chr7_1:36864683-36864702 Msa1017590:intron 30.0%
TATAACTCAAGCCTATTGTA+AGG - chr7_1:36864719-36864738 None:intergenic 30.0%
CTGATACCATCTTAGAATTT+AGG - chr7_1:36864749-36864768 None:intergenic 30.0%
GTGTATTGAAAGTCTCAAAT+TGG + chr7_1:36864985-36865004 Msa1017590:intron 30.0%
AAATTGGACATGATATGCTA+GGG + chr7_1:36865001-36865020 Msa1017590:intron 30.0%
!! CTTTTTAAGCTGATTTTGTG+GGG + chr7_1:36865047-36865066 Msa1017590:intron 30.0%
CTAATATCTACCACAACATT+TGG - chr7_1:36865146-36865165 None:intergenic 30.0%
! ACTCATATTTGGAATTGTTC+TGG - chr7_1:36865586-36865605 None:intergenic 30.0%
!! AATTCTAGGACATATGTTTG+AGG + chr7_1:36865735-36865754 Msa1017590:intron 30.0%
TTCTTTCACATATGCAACAT+TGG - chr7_1:36865783-36865802 None:intergenic 30.0%
ATCCAAAACTTCATTCTGAA+GGG - chr7_1:36865830-36865849 None:intergenic 30.0%
AATCCAAAACTTCATTCTGA+AGG - chr7_1:36865831-36865850 None:intergenic 30.0%
GGAATCAACTAACAAAGAAA+GGG - chr7_1:36865889-36865908 None:intergenic 30.0%
TGGAATCAACTAACAAAGAA+AGG - chr7_1:36865890-36865909 None:intergenic 30.0%
AGATACACAAGATAGAATTG+AGG + chr7_1:36866016-36866035 Msa1017590:CDS 30.0%
! GGTTTCACTTTCAAAGTTTT+TGG + chr7_1:36866230-36866249 Msa1017590:CDS 30.0%
! TGTCATTTGTTTCAACAGTT+TGG + chr7_1:36866317-36866336 Msa1017590:intron 30.0%
!!! CTGTTTTGTTGTTAACTCAT+AGG + chr7_1:36866638-36866657 Msa1017590:intron 30.0%
TGTAAAAAATCAGCCTATTG+AGG + chr7_1:36866691-36866710 Msa1017590:intron 30.0%
!! GTGAAGAGGCTTTAAATATT+TGG + chr7_1:36866862-36866881 Msa1017590:CDS 30.0%
AAACAAGAAGCAAACACATA+AGG - chr7_1:36866922-36866941 None:intergenic 30.0%
!!! AAAGGTGTTTTCAATTCAAC+GGG - chr7_1:36866947-36866966 None:intergenic 30.0%
!!! CAAAGGTGTTTTCAATTCAA+CGG - chr7_1:36866948-36866967 None:intergenic 30.0%
TTACCAATAAACCCATAGAA+CGG - chr7_1:36867084-36867103 None:intergenic 30.0%
! CAAAAACTACTGATTGTTTC+AGG + chr7_1:36867162-36867181 Msa1017590:intron 30.0%
! AAAACTACTGATTGTTTCAG+GGG + chr7_1:36867164-36867183 Msa1017590:intron 30.0%
GTTGTACATAATACTTCCTT+CGG + chr7_1:36867273-36867292 Msa1017590:intron 30.0%
! AATCTGAACTAAACTGATTC+AGG - chr7_1:36867301-36867320 None:intergenic 30.0%
ATCTAATGACATAAACAAGG+GGG + chr7_1:36867354-36867373 Msa1017590:intron 30.0%
GAACTTATATAATAAGCGCT+TGG + chr7_1:36867622-36867641 Msa1017590:intron 30.0%
TTAAGCTGTTTATCCAAACA+CGG + chr7_1:36867649-36867668 Msa1017590:intron 30.0%
! CAAAAGTATGGCAATCTTAT+TGG + chr7_1:36867805-36867824 Msa1017590:CDS 30.0%
!!! TATGGCAATCTTATTGGTTT+TGG + chr7_1:36867811-36867830 Msa1017590:CDS 30.0%
TTATACATAAAGATATGGGC+AGG - chr7_1:36867870-36867889 None:intergenic 30.0%
AATCTATCAATCACTAACCA+AGG - chr7_1:36868017-36868036 None:intergenic 30.0%
TTTGATAAAGTTAGGTGGAA+AGG + chr7_1:36868048-36868067 Msa1017590:intron 30.0%
!! AATTGTTTTTCTTCAAGTGC+AGG + chr7_1:36868107-36868126 Msa1017590:intron 30.0%
!! ATTGTTTTTCTTCAAGTGCA+GGG + chr7_1:36868108-36868127 Msa1017590:intron 30.0%
!! CTGCTTTATTCTTTTATGTC+AGG + chr7_1:36868507-36868526 Msa1017590:CDS 30.0%
! CTTTATTCTTTTATGTCAGG+CGG + chr7_1:36868510-36868529 Msa1017590:CDS 30.0%
CTTATCTGCATATACAACTT+AGG - chr7_1:36868589-36868608 None:intergenic 30.0%
GATCGAAAAAGGTCAATAAA+TGG - chr7_1:36868624-36868643 None:intergenic 30.0%
TAGGTAATGATCAACTACAA+TGG + chr7_1:36868673-36868692 Msa1017590:three_prime_UTR 30.0%
CTTATTAACAATTCCCTTTG+TGG + chr7_1:36868759-36868778 Msa1017590:three_prime_UTR 30.0%
ATACATTCAAGTACCACAAA+GGG - chr7_1:36868775-36868794 None:intergenic 30.0%
AATACATTCAAGTACCACAA+AGG - chr7_1:36868776-36868795 None:intergenic 30.0%
! AGCTTGTTTAATATTTCTCG+AGG + chr7_1:36868808-36868827 Msa1017590:three_prime_UTR 30.0%
!! TGTATGATGGTATTGGTGAA+AGG - chr7_1:36864333-36864352 None:intergenic 35.0%
GTGAGTATGTATGATGGTAT+TGG - chr7_1:36864340-36864359 None:intergenic 35.0%
! GAAGATGATAGGTTGGAATA+AGG - chr7_1:36864362-36864381 None:intergenic 35.0%
! TGATGATGAAGATGATAGGT+TGG - chr7_1:36864369-36864388 None:intergenic 35.0%
! TCATCATCAATGTCACTTAC+AGG + chr7_1:36864383-36864402 Msa1017590:five_prime_UTR 35.0%
GTTGTGGGAATGTTTAACAA+TGG - chr7_1:36864461-36864480 None:intergenic 35.0%
CAATTTGCAAACAACCTATG+AGG - chr7_1:36864545-36864564 None:intergenic 35.0%
CTCATAGGTTGTTTGCAAAT+TGG + chr7_1:36864543-36864562 Msa1017590:CDS 35.0%
CAAATTGGACATGATATGCT+AGG + chr7_1:36865000-36865019 Msa1017590:intron 35.0%
AATTGGACATGATATGCTAG+GGG + chr7_1:36865002-36865021 Msa1017590:intron 35.0%
! TTTTTCTCCTCCAAATGTTG+TGG + chr7_1:36865133-36865152 Msa1017590:intron 35.0%
ATATCTACCACAACATTTGG+AGG - chr7_1:36865143-36865162 None:intergenic 35.0%
!! TTATTGATTCCTGATCTGTC+CGG + chr7_1:36865167-36865186 Msa1017590:intron 35.0%
AAATGTGTATGTGAGTACGT+TGG + chr7_1:36865260-36865279 Msa1017590:intron 35.0%
TGTAAATGAATCGTACCTTG+AGG + chr7_1:36865334-36865353 Msa1017590:intron 35.0%
GTAAATGAATCGTACCTTGA+GGG + chr7_1:36865335-36865354 Msa1017590:intron 35.0%
! TATTTGGAATTGTTCTGGAC+CGG - chr7_1:36865581-36865600 None:intergenic 35.0%
! TTCCCTTCAGAATGAAGTTT+TGG + chr7_1:36865825-36865844 Msa1017590:intron 35.0%
CTTCATTATGCTGGATACAA+TGG - chr7_1:36865910-36865929 None:intergenic 35.0%
ATTCTGCTTCTGTAATGCAA+AGG - chr7_1:36865936-36865955 None:intergenic 35.0%
! TTACGAGGCGTTAAAATCTA+AGG + chr7_1:36865986-36866005 Msa1017590:CDS 35.0%
AGAATTGAGGTGCAAACAAA+TGG + chr7_1:36866029-36866048 Msa1017590:CDS 35.0%
GTGCAAACAAATGGTAAAGA+GGG + chr7_1:36866038-36866057 Msa1017590:CDS 35.0%
GCTATGATTGGAATTGCATT+AGG + chr7_1:36866089-36866108 Msa1017590:CDS 35.0%
AAGCAATAGAAGAGGAAGAA+GGG - chr7_1:36866293-36866312 None:intergenic 35.0%
AAAGCAATAGAAGAGGAAGA+AGG - chr7_1:36866294-36866313 None:intergenic 35.0%
GACAAAGAAAGCAATAGAAG+AGG - chr7_1:36866301-36866320 None:intergenic 35.0%
GAGCTACTGCTTAATAGTTA+TGG + chr7_1:36866389-36866408 Msa1017590:intron 35.0%
ATGCATGGATGAATTACAAG+TGG - chr7_1:36866492-36866511 None:intergenic 35.0%
! TTGTCATGCTACTTCAACTT+TGG - chr7_1:36866544-36866563 None:intergenic 35.0%
! CATTTGCTGAATCTTTCTCA+AGG + chr7_1:36867036-36867055 Msa1017590:CDS 35.0%
! AGAACGGTTGATATGATGTA+CGG - chr7_1:36867068-36867087 None:intergenic 35.0%
ACATCATATCAACCGTTCTA+TGG + chr7_1:36867069-36867088 Msa1017590:CDS 35.0%
CATCATATCAACCGTTCTAT+GGG + chr7_1:36867070-36867089 Msa1017590:CDS 35.0%
! TGACATGATACCCTTTTACT+TGG + chr7_1:36867199-36867218 Msa1017590:CDS 35.0%
! GACATGATACCCTTTTACTT+GGG + chr7_1:36867200-36867219 Msa1017590:CDS 35.0%
! ACATGATACCCTTTTACTTG+GGG + chr7_1:36867201-36867220 Msa1017590:CDS 35.0%
AAAAGCTTCCCCAAGTAAAA+GGG - chr7_1:36867212-36867231 None:intergenic 35.0%
! TTCTGCTGATGTTACTTCAA+GGG + chr7_1:36867247-36867266 Msa1017590:CDS 35.0%
ATTGGAGATTGAATCCAACT+AGG + chr7_1:36867326-36867345 Msa1017590:intron 35.0%
TTGGAGATTGAATCCAACTA+GGG + chr7_1:36867327-36867346 Msa1017590:intron 35.0%
TCATTAGATAAACCCCTAGT+TGG - chr7_1:36867343-36867362 None:intergenic 35.0%
TCCATAAGCTCTCTCAAAAA+GGG - chr7_1:36867534-36867553 None:intergenic 35.0%
TTCCATAAGCTCTCTCAAAA+AGG - chr7_1:36867535-36867554 None:intergenic 35.0%
TTTAAGCATTAGACCGTGTT+TGG - chr7_1:36867665-36867684 None:intergenic 35.0%
ACAGACGTTGTACAAAAGTA+TGG + chr7_1:36867793-36867812 Msa1017590:CDS 35.0%
! ATTCAGGTGAATTTGAAGCA+CGG + chr7_1:36868189-36868208 Msa1017590:intron 35.0%
ACAGTAGCAAGAGCAAATAT+CGG - chr7_1:36868352-36868371 None:intergenic 35.0%
! GACAATTTTTCCATATGCTG+TGG + chr7_1:36868475-36868494 Msa1017590:CDS 35.0%
ATACTCTTACATGGCATTCA+AGG - chr7_1:36868552-36868571 None:intergenic 35.0%
GTGACTGATAAGATCGAAAA+AGG - chr7_1:36868635-36868654 None:intergenic 35.0%
CGACAACCAATTTCTGTTAT+AGG + chr7_1:36868654-36868673 Msa1017590:three_prime_UTR 35.0%
ATTAGCCATATATACGAGCT+AGG + chr7_1:36868699-36868718 Msa1017590:three_prime_UTR 35.0%
TTAGCCATATATACGAGCTA+GGG + chr7_1:36868700-36868719 Msa1017590:three_prime_UTR 35.0%
! TGGTGAAAGGTGAGTTTTTG+TGG - chr7_1:36864320-36864339 None:intergenic 40.0%
ACAGGGGTTAAAGACATTGT+TGG - chr7_1:36864425-36864444 None:intergenic 40.0%
! TTAACCCCTGTTTTCTCATG+TGG + chr7_1:36864434-36864453 Msa1017590:CDS 40.0%
! TAACCCCTGTTTTCTCATGT+GGG + chr7_1:36864435-36864454 Msa1017590:CDS 40.0%
!! TGTTCTACAACCTCTGAGAT+TGG - chr7_1:36864483-36864502 None:intergenic 40.0%
CTAAACAGTCTAACAGTGAC+AGG - chr7_1:36864509-36864528 None:intergenic 40.0%
!! GTTCTTTAGCTTTCCCTCAT+AGG + chr7_1:36864528-36864547 Msa1017590:CDS 40.0%
GAGAAGTTAGTTACCTGAAG+AGG - chr7_1:36864592-36864611 None:intergenic 40.0%
GTTCTCCTTCACCTTACAAT+AGG + chr7_1:36864705-36864724 Msa1017590:intron 40.0%
TCAAGCCTATTGTAAGGTGA+AGG - chr7_1:36864713-36864732 None:intergenic 40.0%
! CTAGGGGTATGTTTACATGT+AGG + chr7_1:36865018-36865037 Msa1017590:intron 40.0%
! ACGCTGTGTCACTCTTATAT+AGG + chr7_1:36865360-36865379 Msa1017590:intron 40.0%
AGTAAGTCCACGTGACTTTA+TGG + chr7_1:36865540-36865559 Msa1017590:intron 40.0%
GTAAGTCCACGTGACTTTAT+GGG + chr7_1:36865541-36865560 Msa1017590:intron 40.0%
GAAAGGGAAGCTGAATAACA+AGG - chr7_1:36865873-36865892 None:intergenic 40.0%
CAAAGGTGACTTCATTATGC+TGG - chr7_1:36865919-36865938 None:intergenic 40.0%
GGTGCAAACAAATGGTAAAG+AGG + chr7_1:36866037-36866056 Msa1017590:CDS 40.0%
ATTCCAATCATAGCCAGGAA+CGG - chr7_1:36866083-36866102 None:intergenic 40.0%
ATGCAATTCCAATCATAGCC+AGG - chr7_1:36866088-36866107 None:intergenic 40.0%
TTCTGACAGAATCTGTAGAC+CGG - chr7_1:36866174-36866193 None:intergenic 40.0%
AGCAATAGAAGAGGAAGAAG+GGG - chr7_1:36866292-36866311 None:intergenic 40.0%
TGAATTACAAGTGGCAGACA+TGG - chr7_1:36866483-36866502 None:intergenic 40.0%
! ATCAGCCTATTGAGGCATTA+TGG + chr7_1:36866699-36866718 Msa1017590:intron 40.0%
TGCTACCATAATGCCTCAAT+AGG - chr7_1:36866707-36866726 None:intergenic 40.0%
! GATCTACTTCTGGTTGCTTA+TGG + chr7_1:36866815-36866834 Msa1017590:CDS 40.0%
CAACCGTTCTATGGGTTTAT+TGG + chr7_1:36867078-36867097 Msa1017590:CDS 40.0%
GAAAAGCTTCCCCAAGTAAA+AGG - chr7_1:36867213-36867232 None:intergenic 40.0%
! CTTCTGCTGATGTTACTTCA+AGG + chr7_1:36867246-36867265 Msa1017590:CDS 40.0%
! TAAACTGATTCAGGTTCCGA+AGG - chr7_1:36867292-36867311 None:intergenic 40.0%
TGGAGATTGAATCCAACTAG+GGG + chr7_1:36867328-36867347 Msa1017590:intron 40.0%
CTTTCAGTCACATGACAACA+AGG - chr7_1:36867382-36867401 None:intergenic 40.0%
! CTTGTTGTCATGTGACTGAA+AGG + chr7_1:36867380-36867399 Msa1017590:intron 40.0%
TGTCATGTGACTGAAAGGTT+TGG + chr7_1:36867385-36867404 Msa1017590:intron 40.0%
GTCATGTGACTGAAAGGTTT+GGG + chr7_1:36867386-36867405 Msa1017590:intron 40.0%
! AAAGGTTTGGGTTCAATTCC+TGG + chr7_1:36867398-36867417 Msa1017590:intron 40.0%
AGCCTCTTGCGTAAAAAACA+GGG + chr7_1:36867425-36867444 Msa1017590:intron 40.0%
CGTACTATACACCAAATGGT+TGG + chr7_1:36867456-36867475 Msa1017590:intron 40.0%
!!! TTTTGGTGGTGTCAACAGTT+AGG + chr7_1:36867742-36867761 Msa1017590:intron 40.0%
!! GTTAGGCATTGGTAAAGAGA+AGG + chr7_1:36867759-36867778 Msa1017590:intron 40.0%
!!! TTTTTTGCAGGGGTCTGTTT+TGG + chr7_1:36868147-36868166 Msa1017590:CDS 40.0%
! TTTTTGCAGGGGTCTGTTTT+GGG + chr7_1:36868148-36868167 Msa1017590:CDS 40.0%
TCTGTTCACACTTTCCATTC+AGG + chr7_1:36868173-36868192 Msa1017590:CDS 40.0%
GTGCTTCAAATTCACCTGAA+TGG - chr7_1:36868190-36868209 None:intergenic 40.0%
TCCTTACATATGTGATCAGC+TGG + chr7_1:36868300-36868319 Msa1017590:intron 40.0%
CCTTACATATGTGATCAGCT+GGG + chr7_1:36868301-36868320 Msa1017590:intron 40.0%
ATATGTGATCAGCTGGGAAT+AGG + chr7_1:36868307-36868326 Msa1017590:intron 40.0%
! TGGGAATAGGATTCCTTTTG+AGG + chr7_1:36868320-36868339 Msa1017590:CDS 40.0%
! GGGAATAGGATTCCTTTTGA+GGG + chr7_1:36868321-36868340 Msa1017590:CDS 40.0%
!! TAGGATTCCTTTTGAGGGAA+CGG + chr7_1:36868326-36868345 Msa1017590:CDS 40.0%
TGAACCCTAGCTCGTATATA+TGG - chr7_1:36868707-36868726 None:intergenic 40.0%
TGAAGTCTCATCCAACCACA+TGG + chr7_1:36864293-36864312 Msa1017590:five_prime_UTR 45.0%
! GTTTTTGTGGTCCATGTGGT+TGG - chr7_1:36864307-36864326 None:intergenic 45.0%
! GTGAGTTTTTGTGGTCCATG+TGG - chr7_1:36864311-36864330 None:intergenic 45.0%
ATGGCCCACATGAGAAAACA+GGG - chr7_1:36864442-36864461 None:intergenic 45.0%
AATGGCCCACATGAGAAAAC+AGG - chr7_1:36864443-36864462 None:intergenic 45.0%
ATTCCCACAACCAATCTCAG+AGG + chr7_1:36864470-36864489 Msa1017590:CDS 45.0%
!! CAACCTCTGAGATTGGTTGT+GGG - chr7_1:36864476-36864495 None:intergenic 45.0%
!! ACAACCTCTGAGATTGGTTG+TGG - chr7_1:36864477-36864496 None:intergenic 45.0%
TATGAAGCACAGACACTCCT+CGG + chr7_1:36864776-36864795 Msa1017590:intron 45.0%
GCGGAGTCTAATATGAAGCA+CGG - chr7_1:36864926-36864945 None:intergenic 45.0%
!! CCCATTTCTCTCACTGACTT+GGG - chr7_1:36865296-36865315 None:intergenic 45.0%
CCCAAGTCAGTGAGAGAAAT+GGG + chr7_1:36865293-36865312 Msa1017590:intron 45.0%
CCAAGTCAGTGAGAGAAATG+GGG + chr7_1:36865294-36865313 Msa1017590:intron 45.0%
CACTCTTATATAGGCGAGAG+CGG + chr7_1:36865369-36865388 Msa1017590:intron 45.0%
CTAACGGCTTCTGTGAAATG+TGG + chr7_1:36865394-36865413 Msa1017590:intron 45.0%
! AAAGAAGCACAACGTCCTGA+GGG - chr7_1:36865514-36865533 None:intergenic 45.0%
TCCACGTGACTTTATGGGAT+TGG + chr7_1:36865546-36865565 Msa1017590:intron 45.0%
TCCAATCCCATAAAGTCACG+TGG - chr7_1:36865550-36865569 None:intergenic 45.0%
ATGGGATTGGACGTTCTAAC+CGG + chr7_1:36865559-36865578 Msa1017590:intron 45.0%
! ATGCTCTAAACATGAGGGTG+AGG + chr7_1:36865959-36865978 Msa1017590:CDS 45.0%
TGAGGGTGAGGAAAATTACG+AGG + chr7_1:36865971-36865990 Msa1017590:CDS 45.0%
TTCCAATCATAGCCAGGAAC+GGG - chr7_1:36866082-36866101 None:intergenic 45.0%
TAGAATAGGCTGTTGGCGAA+TGG - chr7_1:36866141-36866160 None:intergenic 45.0%
ATTCGCCAACAGCCTATTCT+AGG + chr7_1:36866140-36866159 Msa1017590:CDS 45.0%
GTGATCCTAGAATAGGCTGT+TGG - chr7_1:36866148-36866167 None:intergenic 45.0%
GGTCTACAGATTCTGTCAGA+AGG + chr7_1:36866173-36866192 Msa1017590:CDS 45.0%
AAAGTGAAACCAGCAGCAAC+AGG - chr7_1:36866221-36866240 None:intergenic 45.0%
ATAATTCCGCAATGTGCACC+AGG + chr7_1:36866263-36866282 Msa1017590:CDS 45.0%
TAATTCCGCAATGTGCACCA+GGG + chr7_1:36866264-36866283 Msa1017590:CDS 45.0%
! AACTGCTAGTTCTCGATGCA+TGG - chr7_1:36866507-36866526 None:intergenic 45.0%
GTATCTGAATTCCCTGCAGA+TGG + chr7_1:36866793-36866812 Msa1017590:intron 45.0%
CAGAAGTAGATCCATCTGCA+GGG - chr7_1:36866807-36866826 None:intergenic 45.0%
! CGGTCTTTTCATCAGTGAAG+AGG + chr7_1:36866848-36866867 Msa1017590:CDS 45.0%
! TTTGGGTCTGTGCTTTTCAC+TGG + chr7_1:36866880-36866899 Msa1017590:intron 45.0%
!! AGGTTGGTACGTCAATAGCA+AGG + chr7_1:36866985-36867004 Msa1017590:intron 45.0%
! GGGAAGCTTTTCAGAAAGTC+TGG + chr7_1:36867221-36867240 Msa1017590:CDS 45.0%
CAGCCTCTTGCGTAAAAAAC+AGG + chr7_1:36867424-36867443 Msa1017590:intron 45.0%
!!! TGCCCTGTTTTTTACGCAAG+AGG - chr7_1:36867430-36867449 None:intergenic 45.0%
CTTGCGTAAAAAACAGGGCA+AGG + chr7_1:36867430-36867449 Msa1017590:intron 45.0%
GCTGCGTACTATACACCAAA+TGG + chr7_1:36867452-36867471 Msa1017590:intron 45.0%
AAGCTCTCTCAAAAAGGGCA+GGG - chr7_1:36867529-36867548 None:intergenic 45.0%
TAAGCTCTCTCAAAAAGGGC+AGG - chr7_1:36867530-36867549 None:intergenic 45.0%
!! GCCCTTTTTGAGAGAGCTTA+TGG + chr7_1:36867530-36867549 Msa1017590:intron 45.0%
! TGGTGTCAACAGTTAGGCAT+TGG + chr7_1:36867748-36867767 Msa1017590:intron 45.0%
GCAGTTGAACGATTCTCTCT+TGG + chr7_1:36867959-36867978 Msa1017590:intron 45.0%
! AACCCTACAGCTTTTCTTGC+AGG + chr7_1:36867989-36868008 Msa1017590:CDS 45.0%
CTCCTGCAAGAAAAGCTGTA+GGG - chr7_1:36867994-36868013 None:intergenic 45.0%
! TCAAGTGCAGGGTATTTCTC+CGG + chr7_1:36868119-36868138 Msa1017590:intron 45.0%
!!! TCTCCGGAGTTGTTTTTTGC+AGG + chr7_1:36868135-36868154 Msa1017590:CDS 45.0%
!!! CTCCGGAGTTGTTTTTTGCA+GGG + chr7_1:36868136-36868155 Msa1017590:CDS 45.0%
!!! TCCGGAGTTGTTTTTTGCAG+GGG + chr7_1:36868137-36868156 Msa1017590:CDS 45.0%
ACCCCTGCAAAAAACAACTC+CGG - chr7_1:36868141-36868160 None:intergenic 45.0%
! TTTTGCAGGGGTCTGTTTTG+GGG + chr7_1:36868149-36868168 Msa1017590:CDS 45.0%
CCCAGCTGATCACATATGTA+AGG - chr7_1:36868304-36868323 None:intergenic 45.0%
TGGCCCACATGAGAAAACAG+GGG - chr7_1:36864441-36864460 None:intergenic 50.0%
CACACGTTTCTCACCTCTTC+AGG + chr7_1:36864576-36864595 Msa1017590:CDS 50.0%
ACACAGACACGTCTAATCCG+AGG - chr7_1:36864796-36864815 None:intergenic 50.0%
GTGTCGTGTTCTGTCAGTGT+CGG - chr7_1:36864819-36864838 None:intergenic 50.0%
ATGAAGCACGGATACGCACA+CGG - chr7_1:36864914-36864933 None:intergenic 50.0%
TACGCTGCAAAGGCTAGTGT+TGG + chr7_1:36864946-36864965 Msa1017590:intron 50.0%
ACGCTGCAAAGGCTAGTGTT+GGG + chr7_1:36864947-36864966 Msa1017590:intron 50.0%
! AAAGGCTAGTGTTGGGCGTA+GGG + chr7_1:36864954-36864973 Msa1017590:intron 50.0%
TGATCACTACCGGACAGATC+AGG - chr7_1:36865179-36865198 None:intergenic 50.0%
TAGTGATCAGACAGCGGCAA+CGG + chr7_1:36865190-36865209 Msa1017590:intron 50.0%
!! TCTCTCACTGACTTGGGCAT+TGG - chr7_1:36865290-36865309 None:intergenic 50.0%
GCCCAAGTCAGTGAGAGAAA+TGG + chr7_1:36865292-36865311 Msa1017590:intron 50.0%
! CCCCATTTCTCTCACTGACT+TGG - chr7_1:36865297-36865316 None:intergenic 50.0%
TGAAATGTGGCGCCTCATCA+AGG + chr7_1:36865407-36865426 Msa1017590:intron 50.0%
TTCAAGACGGTGATCCACAC+TGG + chr7_1:36865476-36865495 Msa1017590:intron 50.0%
! GAAAGAAGCACAACGTCCTG+AGG - chr7_1:36865515-36865534 None:intergenic 50.0%
GGACGTTGTGCTTCTTTCTG+AGG + chr7_1:36865517-36865536 Msa1017590:intron 50.0%
ATCCCGTTCCTGGCTATGAT+TGG + chr7_1:36866077-36866096 Msa1017590:CDS 50.0%
!! CCTATTCTAGGATCACCGTC+CGG + chr7_1:36866152-36866171 Msa1017590:CDS 50.0%
GACAGAATCTGTAGACCGGA+CGG - chr7_1:36866170-36866189 None:intergenic 50.0%
AACAGGAGCAACTGCTGAAG+AGG - chr7_1:36866204-36866223 None:intergenic 50.0%
CCAGAAGTAGATCCATCTGC+AGG - chr7_1:36866808-36866827 None:intergenic 50.0%
CCTGCAGATGGATCTACTTC+TGG + chr7_1:36866805-36866824 Msa1017590:intron 50.0%
! TTCTGGTTGCTTATGGCTGC+AGG + chr7_1:36866822-36866841 Msa1017590:CDS 50.0%
TTGCTTATGGCTGCAGGTTG+CGG + chr7_1:36866828-36866847 Msa1017590:CDS 50.0%
TTCTGTCTCTCGACGGAACA+TGG + chr7_1:36867009-36867028 Msa1017590:CDS 50.0%
! TTACGCAAGAGGCTGTTTCC+AGG - chr7_1:36867419-36867438 None:intergenic 50.0%
GCTCCTGCAAGAAAAGCTGT+AGG - chr7_1:36867995-36868014 None:intergenic 50.0%
! AGCTTTTCTTGCAGGAGCCT+TGG + chr7_1:36867997-36868016 Msa1017590:CDS 50.0%
!! TTTGCAGGGGTCTGTTTTGG+GGG + chr7_1:36868150-36868169 Msa1017590:CDS 50.0%
ATATCGGCCGTTCCCTCAAA+AGG - chr7_1:36868336-36868355 None:intergenic 50.0%
TGCTACTGTCGCAACCGTAA+TGG + chr7_1:36868363-36868382 Msa1017590:CDS 50.0%
GTTGAAGCAGCCACAGCATA+TGG - chr7_1:36868488-36868507 None:intergenic 50.0%
!! AGCAGTGTCGGTGTTGTGTC+CGG + chr7_1:36864885-36864904 Msa1017590:intron 55.0%
TAGACTCCGCTACGCTGCAA+AGG + chr7_1:36864936-36864955 Msa1017590:intron 55.0%
!! CACTAGCCTTTGCAGCGTAG+CGG - chr7_1:36864945-36864964 None:intergenic 55.0%
! CAAAGGCTAGTGTTGGGCGT+AGG + chr7_1:36864953-36864972 Msa1017590:intron 55.0%
GTCCGGTAGTGATCAGACAG+CGG + chr7_1:36865184-36865203 Msa1017590:intron 55.0%
TGCCGCTGTCTGATCACTAC+CGG - chr7_1:36865189-36865208 None:intergenic 55.0%
TGAAGACTACGCCACTGTGC+CGG - chr7_1:36865230-36865249 None:intergenic 55.0%
GCACAGTGGCGTAGTCTTCA+TGG + chr7_1:36865230-36865249 Msa1017590:intron 55.0%
! ATAGGCGAGAGCGGTGCTAA+CGG + chr7_1:36865378-36865397 Msa1017590:intron 55.0%
ACCGTACATGTGGCCTCCAA+CGG - chr7_1:36865435-36865454 None:intergenic 55.0%
CCTTTCCTGCACCGTACATG+TGG - chr7_1:36865445-36865464 None:intergenic 55.0%
CCACATGTACGGTGCAGGAA+AGG + chr7_1:36865442-36865461 Msa1017590:intron 55.0%
TGTACGGTGCAGGAAAGGTG+AGG + chr7_1:36865447-36865466 Msa1017590:intron 55.0%
GTACGGTGCAGGAAAGGTGA+GGG + chr7_1:36865448-36865467 Msa1017590:intron 55.0%
! GGTGAGGGCGTGTTTCAAGA+CGG + chr7_1:36865463-36865482 Msa1017590:intron 55.0%
CAAGACAGAGATCCCGTTCC+TGG + chr7_1:36866067-36866086 Msa1017590:CDS 55.0%
CCGGACGGTGATCCTAGAAT+AGG - chr7_1:36866155-36866174 None:intergenic 55.0%
!! AAGAGGAAGAAGGGGTACCC+TGG - chr7_1:36866284-36866303 None:intergenic 55.0%
GCAAGGCTTCTGTCTCTCGA+CGG + chr7_1:36867002-36867021 Msa1017590:CDS 55.0%
CAAATGGTTGGACGCCTTCC+CGG + chr7_1:36867468-36867487 Msa1017590:intron 55.0%
ACAGAGCTACCGCATACGCA+GGG - chr7_1:36867495-36867514 None:intergenic 55.0%
! TATGCGGTAGCTCTGTGGAC+CGG + chr7_1:36867499-36867518 Msa1017590:intron 55.0%
ACGGATACGCACACGGACAC+CGG - chr7_1:36864907-36864926 None:intergenic 60.0%
! AGTGTTGGGCGTAGGGCAGT+AGG + chr7_1:36864961-36864980 Msa1017590:intron 60.0%
GTGTTGGGCGTAGGGCAGTA+GGG + chr7_1:36864962-36864981 Msa1017590:intron 60.0%
TGTTGGGCGTAGGGCAGTAG+GGG + chr7_1:36864963-36864982 Msa1017590:intron 60.0%
AACGGTCTCGTGCGGCATTC+CGG + chr7_1:36865208-36865227 Msa1017590:intron 60.0%
GTGACACAGCGTCACCCTCA+AGG - chr7_1:36865352-36865371 None:intergenic 60.0%
CCTCCAACGGCTCCTTGATG+AGG - chr7_1:36865422-36865441 None:intergenic 60.0%
CCTCATCAAGGAGCCGTTGG+AGG + chr7_1:36865419-36865438 Msa1017590:intron 60.0%
GCCGTTGGAGGCCACATGTA+CGG + chr7_1:36865431-36865450 Msa1017590:intron 60.0%
GGAGCACGCTAGTTCCAGTG+TGG - chr7_1:36865493-36865512 None:intergenic 60.0%
TGGAACTAGCGTGCTCCCTC+AGG + chr7_1:36865496-36865515 Msa1017590:intron 60.0%
GCAGTTGCTCCTGTTGCTGC+TGG + chr7_1:36866209-36866228 Msa1017590:CDS 60.0%
GGGTACCCTGGTGCACATTG+CGG - chr7_1:36866272-36866291 None:intergenic 60.0%
!! CGGGAAGGCGTCCAACCATT+TGG - chr7_1:36867470-36867489 None:intergenic 60.0%
CACAGAGCTACCGCATACGC+AGG - chr7_1:36867496-36867515 None:intergenic 60.0%
! CTGCGTATGCGGTAGCTCTG+TGG + chr7_1:36867494-36867513 Msa1017590:intron 60.0%
! ATGCGGTAGCTCTGTGGACC+GGG + chr7_1:36867500-36867519 Msa1017590:intron 60.0%
TCAAAAAGGGCAGGGCAGCC+CGG - chr7_1:36867521-36867540 None:intergenic 60.0%
ACAGCGGCAACGGTCTCGTG+CGG + chr7_1:36865200-36865219 Msa1017590:intron 65.0%
GCGCCTCATCAAGGAGCCGT+TGG + chr7_1:36865416-36865435 Msa1017590:intron 65.0%
GGAGGCCACATGTACGGTGC+AGG + chr7_1:36865437-36865456 Msa1017590:intron 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr7_1:36867483-36867502 Msa1017590:intron 65.0%
CTACCGCATACGCAGGGTCC+GGG - chr7_1:36867489-36867508 None:intergenic 65.0%
GCTACCGCATACGCAGGGTC+CGG - chr7_1:36867490-36867509 None:intergenic 65.0%
CGTGCGGCATTCCGGCACAG+TGG + chr7_1:36865216-36865235 Msa1017590:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr7_1:36867485-36867504 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 36864292 36868894 36864292 ID=Msa1017590;Name=Msa1017590
chr7_1 mRNA 36864292 36868894 36864292 ID=Msa1017590-mRNA-1;Parent=Msa1017590;Name=Msa1017590-mRNA-1;_AED=0.12;_eAED=0.12;_QI=136|0.88|0.9|1|0.88|0.9|10|347|382
chr7_1 exon 36864292 36864597 36864292 ID=Msa1017590-mRNA-1:exon:6938;Parent=Msa1017590-mRNA-1
chr7_1 exon 36865920 36866285 36865920 ID=Msa1017590-mRNA-1:exon:6939;Parent=Msa1017590-mRNA-1
chr7_1 exon 36866812 36866884 36866812 ID=Msa1017590-mRNA-1:exon:6940;Parent=Msa1017590-mRNA-1
chr7_1 exon 36866987 36867099 36866987 ID=Msa1017590-mRNA-1:exon:6941;Parent=Msa1017590-mRNA-1
chr7_1 exon 36867184 36867268 36867184 ID=Msa1017590-mRNA-1:exon:6942;Parent=Msa1017590-mRNA-1
chr7_1 exon 36867760 36867832 36867760 ID=Msa1017590-mRNA-1:exon:6943;Parent=Msa1017590-mRNA-1
chr7_1 exon 36867963 36868018 36867963 ID=Msa1017590-mRNA-1:exon:6944;Parent=Msa1017590-mRNA-1
chr7_1 exon 36868129 36868194 36868129 ID=Msa1017590-mRNA-1:exon:6945;Parent=Msa1017590-mRNA-1
chr7_1 exon 36868319 36868384 36868319 ID=Msa1017590-mRNA-1:exon:6946;Parent=Msa1017590-mRNA-1
chr7_1 exon 36868467 36868894 36868467 ID=Msa1017590-mRNA-1:exon:6947;Parent=Msa1017590-mRNA-1
chr7_1 five_prime_UTR 36864292 36864427 36864292 ID=Msa1017590-mRNA-1:five_prime_utr;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36864428 36864597 36864428 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36865920 36866285 36865920 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36866812 36866884 36866812 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36866987 36867099 36866987 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36867184 36867268 36867184 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36867760 36867832 36867760 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36867963 36868018 36867963 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36868129 36868194 36868129 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36868319 36868384 36868319 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 CDS 36868467 36868547 36868467 ID=Msa1017590-mRNA-1:cds;Parent=Msa1017590-mRNA-1
chr7_1 three_prime_UTR 36868548 36868894 36868548 ID=Msa1017590-mRNA-1:three_prime_utr;Parent=Msa1017590-mRNA-1
Gene Sequence

>Msa1017590

ATGTCTTTAACCCCTGTTTTCTCATGTGGGCCATTGTTAAACATTCCCACAACCAATCTCAGAGGTTGTAGAACAAAACCTGTCACTGTTAGACTGTTTAGTTCTTTAGCTTTCCCTCATAGGTTGTTTGCAAATTGGAATACAAATGCACACGTTTCTCACCTCTTCAGCATAATGAAGTCACCTTTGCATTACAGAAGCAGAATTAAATGCTCTAAACATGAGGGTGAGGAAAATTACGAGGCGTTAAAATCTAAGGATATATTAGATACACAAGATAGAATTGAGGTGCAAACAAATGGTAAAGAGGGACATAACAAGACAGAGATCCCGTTCCTGGCTATGATTGGAATTGCATTAGGCATAGCTGCATTAGCTACAATAGCATCCATTCGCCAACAGCCTATTCTAGGATCACCGTCCGGTCTACAGATTCTGTCAGAAGGTTCTTCCTCTTCAGCAGTTGCTCCTGTTGCTGCTGGTTTCACTTTCAAAGTTTTTGGATTCAGCGTTATAATTCCGCAATGTGCACCAGGATGGATCTACTTCTGGTTGCTTATGGCTGCAGGTTGCGGTCTTTTCATCAGTGAAGAGGCTTTAAATATTTGGGTTGGTACGTCAATAGCAAGGCTTCTGTCTCTCGACGGAACATGGCAGTCATTTGCTGAATCTTTCTCAAGGAATGCTCCGTACATCATATCAACCGTTCTATGGGTTTATTGGGGAGTTTGCATTAGTGACATGATACCCTTTTACTTGGGGAAGCTTTTCAGAAAGTCTGGTGCTTCTGCTGATGTTACTTCAAGGTTAGGCATTGGTAAAGAGAAGGCTACAGAAATCACAGACGTTGTACAAAAGTATGGCAATCTTATTGGTTTTGTTGAACGATTCTCTCTTGGAGTGAGAAACCCTACAGCTTTTCTTGCAGGAGCCTTGGGTATTTCTCCGGAGTTGTTTTTTGCAGGGGTCTGTTTTGGGGGTCTGTTCACACTTTCCATTCAGCTGGGAATAGGATTCCTTTTGAGGGAACGGCCGATATTTGCTCTTGCTACTGTCGCAACCGTAATGGGAATTTGGACAATTTTTCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTATGTCAGGCGGAAGTACTTATCTTAG

Protein sequence

>Msa1017590

MSLTPVFSCGPLLNIPTTNLRGCRTKPVTVRLFSSLAFPHRLFANWNTNAHVSHLFSIMKSPLHYRSRIKCSKHEGEENYEALKSKDILDTQDRIEVQTNGKEGHNKTEIPFLAMIGIALGIAALATIASIRQQPILGSPSGLQILSEGSSSSAVAPVAAGFTFKVFGFSVIIPQCAPGWIYFWLLMAAGCGLFISEEALNIWVGTSIARLLSLDGTWQSFAESFSRNAPYIISTVLWVYWGVCISDMIPFYLGKLFRKSGASADVTSRLGIGKEKATEITDVVQKYGNLIGFVERFSLGVRNPTAFLAGALGISPELFFAGVCFGGLFTLSIQLGIGFLLRERPIFALATVATVMGIWTIFPYAVAASTALFFYVRRKYLS*