AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070930 MtrunA17_Chr7g0241071 89.091 220 9 3 1 205 1 220 3.44e-131 375
Msa1070930 MtrunA17_Chr6g0463901 50.781 128 58 1 81 203 31 158 4.46e-33 121
Msa1070930 MtrunA17_Chr2g0278581 47.656 128 62 1 81 203 31 158 7.56e-30 113
Msa1070930 MtrunA17_Chr4g0049821 40.945 127 65 4 79 200 84 205 6.37e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070930 AT3G54050.2 71.717 198 36 4 21 200 27 222 2.00e-82 251
Msa1070930 AT3G54050.1 71.717 198 36 4 21 200 27 222 2.00e-82 251
Msa1070930 AT1G43670.1 50.000 128 59 1 81 203 31 158 1.38e-31 118
Msa1070930 AT5G64380.1 36.364 198 96 9 15 188 9 200 7.12e-20 87.0

Find 50 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACTTAGAAAACCTAATT+AGG 0.217027 7_2:-67259446 Msa1070930:three_prime_UTR
TAATTGAACCAATCCTAATT+AGG 0.223753 7_2:+67259433 None:intergenic
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7_2:-67260556 Msa1070930:CDS
AGGAATCGAACTCGGTAATT+TGG 0.240700 7_2:-67259644 Msa1070930:three_prime_UTR
GCTAATATTTCTAACCTTAC+TGG 0.275094 7_2:-67260525 Msa1070930:CDS
TTAGGATTGGTTCAATTAGT+AGG 0.340567 7_2:-67259428 Msa1070930:three_prime_UTR
GGACACTGCAGCATCAATAT+TGG 0.354716 7_2:+67259783 None:intergenic
CATAGACGTGAAGGAGAATA+AGG 0.361630 7_2:+67260810 None:intergenic
GCAGTAGAAGAGAGTTATTC+CGG 0.380670 7_2:-67259844 Msa1070930:CDS
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7_2:-67260516 Msa1070930:CDS
GTGGTATTTGATCCACTTGA+TGG 0.400154 7_2:-67259811 Msa1070930:CDS
GTAAACGAGTCTACGTCTTC+AGG 0.415879 7_2:+67259615 None:intergenic
TCAGGAAGACACTCATCATT+GGG 0.419785 7_2:+67259733 None:intergenic
GTCAGGAAGACACTCATCAT+TGG 0.422599 7_2:+67259732 None:intergenic
CAAGGTGCTGTAAATATTCA+AGG 0.437548 7_2:-67260498 Msa1070930:CDS
AAATACCACAATGTAGTTTC+CGG 0.441071 7_2:+67259825 None:intergenic
TACGAGCTTATAACATTGAC+TGG 0.453963 7_2:-67260654 Msa1070930:intron
TCAAATTGTTTGAGGTCAAG+TGG 0.463529 7_2:-67259910 Msa1070930:CDS
TTAGAAAACCTAATTAGGAT+TGG 0.465829 7_2:-67259441 Msa1070930:three_prime_UTR
AGGTATTCTCAAATTGTTTG+AGG 0.481726 7_2:-67259918 Msa1070930:CDS
AATTATAGCATCAGAGGAAG+AGG 0.500187 7_2:-67259878 Msa1070930:CDS
TTGAGGTCAAGTGGGAGGAC+AGG 0.501608 7_2:-67259901 Msa1070930:CDS
CAGCACCTTGAACACCAGTA+AGG 0.507446 7_2:+67260511 None:intergenic
TCAGACTCATCACTGAGGTC+AGG 0.528684 7_2:+67259715 None:intergenic
TCGAACTCGGTAATTTGGAG+TGG 0.529747 7_2:-67259639 Msa1070930:three_prime_UTR
TCGAAGCATTCACTTACTGT+GGG 0.529751 7_2:+67259691 None:intergenic
TTCGAAGCATTCACTTACTG+TGG 0.535005 7_2:+67259690 None:intergenic
CAAATTGTTTGAGGTCAAGT+GGG 0.545156 7_2:-67259909 Msa1070930:CDS
TAACTCTCTTCTACTGCCAC+TGG 0.549975 7_2:+67259850 None:intergenic
GACAGGAATTATAGCATCAG+AGG 0.565224 7_2:-67259884 Msa1070930:CDS
GTCGAAGACACAAAGTTGGA+AGG 0.567894 7_2:+67260785 None:intergenic
ATTGATGCTGCAGTGTCCAC+CGG 0.568122 7_2:-67259778 Msa1070930:CDS
ATAAGTGTGAATGAATCAAG+TGG 0.574485 7_2:-67259550 Msa1070930:three_prime_UTR
AAGGTGCTGTAAATATTCAA+GGG 0.588316 7_2:-67260497 Msa1070930:CDS
CTCTGGAGGAGTGAGATGCA+TGG 0.594547 7_2:-67260718 Msa1070930:CDS
AAGCATGTGAGTGGCTCTGG+AGG 0.595509 7_2:-67260732 Msa1070930:CDS
TCGTGTCGAAGACACAAAGT+TGG 0.599445 7_2:+67260781 None:intergenic
AGAGGAAGAGGATGTGCCAG+TGG 0.608988 7_2:-67259866 Msa1070930:CDS
CGAACTCGGTAATTTGGAGT+GGG 0.618040 7_2:-67259638 Msa1070930:three_prime_UTR
TGGAAGGGACATAGACGTGA+AGG 0.619746 7_2:+67260801 None:intergenic
TCGAAGACACAAAGTTGGAA+GGG 0.631419 7_2:+67260786 None:intergenic
ATTGTTTGAGGTCAAGTGGG+AGG 0.641340 7_2:-67259906 Msa1070930:CDS
ATATTGGATGAACCATCAAG+TGG 0.643892 7_2:+67259799 None:intergenic
AGGTGCTGTAAATATTCAAG+GGG 0.646017 7_2:-67260496 Msa1070930:CDS
TTATGATTAGGAATCGAACT+CGG 0.650167 7_2:-67259652 Msa1070930:exon
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7_2:-67260711 Msa1070930:CDS
CGAAGCATTCACTTACTGTG+GGG 0.672450 7_2:+67259692 None:intergenic
CAGGAAGACACTCATCATTG+GGG 0.698773 7_2:+67259734 None:intergenic
TTATTCCGGAAACTACATTG+TGG 0.728657 7_2:-67259830 Msa1070930:CDS
TGGGGTCAGACTCATCACTG+AGG 0.790814 7_2:+67259710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTAGTTTTGAACT+AGG - chr7_2:67259829-67259848 Msa1070930:CDS 15.0%
!!! ATTTAATTAGTTTTGAACTA+GGG - chr7_2:67259830-67259849 Msa1070930:CDS 15.0%
!!! TATTTAATTAGTTTTGAACT+AGG - chr7_2:67259829-67259848 Msa1070930:CDS 15.0%
!!! ATTTAATTAGTTTTGAACTA+GGG - chr7_2:67259830-67259849 Msa1070930:CDS 15.0%
!! AATATCAATTATTTCAACCT+CGG + chr7_2:67259925-67259944 None:intergenic 20.0%
!! TTAAACTTAAAGGTTTACTT+AGG - chr7_2:67260263-67260282 Msa1070930:intron 20.0%
!!! GATTGTTTTCATTTATGATT+AGG - chr7_2:67260588-67260607 Msa1070930:CDS 20.0%
!! AATATCAATTATTTCAACCT+CGG + chr7_2:67259925-67259944 None:intergenic 20.0%
!! TTAAACTTAAAGGTTTACTT+AGG - chr7_2:67260263-67260282 Msa1070930:intron 20.0%
!!! GATTGTTTTCATTTATGATT+AGG - chr7_2:67260588-67260607 Msa1070930:CDS 20.0%
!!! TGTTTTGAATAGTATTTCGT+TGG - chr7_2:67259672-67259691 Msa1070930:CDS 25.0%
! ACATTTATGAACAAGTATGT+AGG - chr7_2:67260237-67260256 Msa1070930:intron 25.0%
! ATGTAGGTACTTAAACTTAA+AGG - chr7_2:67260253-67260272 Msa1070930:intron 25.0%
!! TGTTTTCTATTCTTTTGTTC+AGG - chr7_2:67260314-67260333 Msa1070930:intron 25.0%
! TTAGAAAACCTAATTAGGAT+TGG - chr7_2:67260811-67260830 Msa1070930:CDS 25.0%
! TAATTGAACCAATCCTAATT+AGG + chr7_2:67260822-67260841 None:intergenic 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG - chr7_2:67259672-67259691 Msa1070930:CDS 25.0%
! ACATTTATGAACAAGTATGT+AGG - chr7_2:67260237-67260256 Msa1070930:intron 25.0%
! ATGTAGGTACTTAAACTTAA+AGG - chr7_2:67260253-67260272 Msa1070930:intron 25.0%
!! TGTTTTCTATTCTTTTGTTC+AGG - chr7_2:67260314-67260333 Msa1070930:intron 25.0%
! TTAGAAAACCTAATTAGGAT+TGG - chr7_2:67260811-67260830 Msa1070930:CDS 25.0%
! TAATTGAACCAATCCTAATT+AGG + chr7_2:67260822-67260841 None:intergenic 25.0%
ATGTAAACAGATTGCTTCTT+TGG - chr7_2:67259696-67259715 Msa1070930:CDS 30.0%
! GCTAATATTTCTAACCTTAC+TGG - chr7_2:67259727-67259746 Msa1070930:CDS 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG - chr7_2:67259755-67259774 Msa1070930:CDS 30.0%
!!! AGACAACATCAAGTTTTTTC+TGG + chr7_2:67259786-67259805 None:intergenic 30.0%
TTGAGACCTAAAAAGTTTCA+TGG - chr7_2:67259899-67259918 Msa1070930:CDS 30.0%
AAGAGAATCGCAATTAATTG+CGG - chr7_2:67259946-67259965 Msa1070930:intron 30.0%
TAGCTTCTTCAAAAACATTG+CGG - chr7_2:67260084-67260103 Msa1070930:intron 30.0%
TGAAGTCTTGATATTCAAAG+TGG + chr7_2:67260131-67260150 None:intergenic 30.0%
! AGGAGTGTATTAGATTTAGA+AGG - chr7_2:67260200-67260219 Msa1070930:intron 30.0%
GGAGTGTATTAGATTTAGAA+GGG - chr7_2:67260201-67260220 Msa1070930:intron 30.0%
AGGTATTCTCAAATTGTTTG+AGG - chr7_2:67260334-67260353 Msa1070930:intron 30.0%
AAATACCACAATGTAGTTTC+CGG + chr7_2:67260430-67260449 None:intergenic 30.0%
GTAAATTCCAAAAATGGAAC+CGG + chr7_2:67260496-67260515 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG - chr7_2:67260600-67260619 Msa1070930:CDS 30.0%
ATAAGTGTGAATGAATCAAG+TGG - chr7_2:67260702-67260721 Msa1070930:CDS 30.0%
GCAACTTAGAAAACCTAATT+AGG - chr7_2:67260806-67260825 Msa1070930:CDS 30.0%
!! TTAGGATTGGTTCAATTAGT+AGG - chr7_2:67260824-67260843 Msa1070930:CDS 30.0%
ATGTAAACAGATTGCTTCTT+TGG - chr7_2:67259696-67259715 Msa1070930:CDS 30.0%
! GCTAATATTTCTAACCTTAC+TGG - chr7_2:67259727-67259746 Msa1070930:CDS 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG - chr7_2:67259755-67259774 Msa1070930:CDS 30.0%
!!! AGACAACATCAAGTTTTTTC+TGG + chr7_2:67259786-67259805 None:intergenic 30.0%
TTGAGACCTAAAAAGTTTCA+TGG - chr7_2:67259899-67259918 Msa1070930:CDS 30.0%
AAGAGAATCGCAATTAATTG+CGG - chr7_2:67259946-67259965 Msa1070930:intron 30.0%
TAGCTTCTTCAAAAACATTG+CGG - chr7_2:67260084-67260103 Msa1070930:intron 30.0%
TGAAGTCTTGATATTCAAAG+TGG + chr7_2:67260131-67260150 None:intergenic 30.0%
! AGGAGTGTATTAGATTTAGA+AGG - chr7_2:67260200-67260219 Msa1070930:intron 30.0%
GGAGTGTATTAGATTTAGAA+GGG - chr7_2:67260201-67260220 Msa1070930:intron 30.0%
AGGTATTCTCAAATTGTTTG+AGG - chr7_2:67260334-67260353 Msa1070930:intron 30.0%
AAATACCACAATGTAGTTTC+CGG + chr7_2:67260430-67260449 None:intergenic 30.0%
GTAAATTCCAAAAATGGAAC+CGG + chr7_2:67260496-67260515 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG - chr7_2:67260600-67260619 Msa1070930:CDS 30.0%
ATAAGTGTGAATGAATCAAG+TGG - chr7_2:67260702-67260721 Msa1070930:CDS 30.0%
GCAACTTAGAAAACCTAATT+AGG - chr7_2:67260806-67260825 Msa1070930:CDS 30.0%
!! TTAGGATTGGTTCAATTAGT+AGG - chr7_2:67260824-67260843 Msa1070930:CDS 30.0%
! TCAAGAAAAAAGCATGTGAG+TGG - chr7_2:67259511-67259530 Msa1070930:three_prime_UTR 35.0%
TACGAGCTTATAACATTGAC+TGG - chr7_2:67259598-67259617 Msa1070930:three_prime_UTR 35.0%
! AGCTTATAACATTGACTGGT+TGG - chr7_2:67259602-67259621 Msa1070930:three_prime_UTR 35.0%
TTGTTGAAGCAAGAACAAAC+AGG - chr7_2:67259625-67259644 Msa1070930:three_prime_UTR 35.0%
TGTTGAAGCAAGAACAAACA+GGG - chr7_2:67259626-67259645 Msa1070930:three_prime_UTR 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG - chr7_2:67259754-67259773 Msa1070930:CDS 35.0%
! AGGTGCTGTAAATATTCAAG+GGG - chr7_2:67259756-67259775 Msa1070930:CDS 35.0%
ACTTGATGTTGTCTCAAATG+AGG - chr7_2:67259792-67259811 Msa1070930:CDS 35.0%
! TTCCAGTTTCTAAGAGAAAG+AGG + chr7_2:67259877-67259896 None:intergenic 35.0%
GGCTAATGTTAAACCAACTT+GGG - chr7_2:67259967-67259986 Msa1070930:intron 35.0%
AATGTTAAACCAACTTGGGT+TGG - chr7_2:67259971-67259990 Msa1070930:intron 35.0%
ATTCTCTCCGGTATCAATTT+AGG - chr7_2:67260051-67260070 Msa1070930:intron 35.0%
!! ATTCAAAGTGGCTCTAATTG+AGG + chr7_2:67260119-67260138 None:intergenic 35.0%
GATTTAGAAGGGTTTACTCT+TGG - chr7_2:67260212-67260231 Msa1070930:intron 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG - chr7_2:67260342-67260361 Msa1070930:intron 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG - chr7_2:67260343-67260362 Msa1070930:intron 35.0%
AATTATAGCATCAGAGGAAG+AGG - chr7_2:67260374-67260393 Msa1070930:intron 35.0%
TTATTCCGGAAACTACATTG+TGG - chr7_2:67260422-67260441 Msa1070930:intron 35.0%
ATATTGGATGAACCATCAAG+TGG + chr7_2:67260456-67260475 None:intergenic 35.0%
! TCAAGAAAAAAGCATGTGAG+TGG - chr7_2:67259511-67259530 Msa1070930:three_prime_UTR 35.0%
TACGAGCTTATAACATTGAC+TGG - chr7_2:67259598-67259617 Msa1070930:three_prime_UTR 35.0%
! AGCTTATAACATTGACTGGT+TGG - chr7_2:67259602-67259621 Msa1070930:three_prime_UTR 35.0%
TTGTTGAAGCAAGAACAAAC+AGG - chr7_2:67259625-67259644 Msa1070930:three_prime_UTR 35.0%
TGTTGAAGCAAGAACAAACA+GGG - chr7_2:67259626-67259645 Msa1070930:three_prime_UTR 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG - chr7_2:67259754-67259773 Msa1070930:CDS 35.0%
! AGGTGCTGTAAATATTCAAG+GGG - chr7_2:67259756-67259775 Msa1070930:CDS 35.0%
ACTTGATGTTGTCTCAAATG+AGG - chr7_2:67259792-67259811 Msa1070930:CDS 35.0%
! TTCCAGTTTCTAAGAGAAAG+AGG + chr7_2:67259877-67259896 None:intergenic 35.0%
GGCTAATGTTAAACCAACTT+GGG - chr7_2:67259967-67259986 Msa1070930:intron 35.0%
AATGTTAAACCAACTTGGGT+TGG - chr7_2:67259971-67259990 Msa1070930:intron 35.0%
ATTCTCTCCGGTATCAATTT+AGG - chr7_2:67260051-67260070 Msa1070930:intron 35.0%
!! ATTCAAAGTGGCTCTAATTG+AGG + chr7_2:67260119-67260138 None:intergenic 35.0%
GATTTAGAAGGGTTTACTCT+TGG - chr7_2:67260212-67260231 Msa1070930:intron 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG - chr7_2:67260342-67260361 Msa1070930:intron 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG - chr7_2:67260343-67260362 Msa1070930:intron 35.0%
AATTATAGCATCAGAGGAAG+AGG - chr7_2:67260374-67260393 Msa1070930:intron 35.0%
TTATTCCGGAAACTACATTG+TGG - chr7_2:67260422-67260441 Msa1070930:intron 35.0%
ATATTGGATGAACCATCAAG+TGG + chr7_2:67260456-67260475 None:intergenic 35.0%
CATAGACGTGAAGGAGAATA+AGG + chr7_2:67259445-67259464 None:intergenic 40.0%
TCGAAGACACAAAGTTGGAA+GGG + chr7_2:67259469-67259488 None:intergenic 40.0%
GTTGAAGCAAGAACAAACAG+GGG - chr7_2:67259627-67259646 Msa1070930:three_prime_UTR 40.0%
TCTAACCTTACTGGTGTTCA+AGG - chr7_2:67259736-67259755 Msa1070930:CDS 40.0%
GGTCTTAGTAATCCAGAGTT+CGG + chr7_2:67259856-67259875 None:intergenic 40.0%
GACCTCTTTCTCTTAGAAAC+TGG - chr7_2:67259872-67259891 Msa1070930:CDS 40.0%
CGGCTAATGTTAAACCAACT+TGG - chr7_2:67259966-67259985 Msa1070930:intron 40.0%
TCTCCGGTATCAATTTAGGT+GGG - chr7_2:67260055-67260074 Msa1070930:intron 40.0%
TAGCCCACCTAAATTGATAC+CGG + chr7_2:67260061-67260080 None:intergenic 40.0%
TATTATCCGCAGTCGTGATT+TGG + chr7_2:67260174-67260193 None:intergenic 40.0%
GACTGCGGATAATATGCTAA+AGG - chr7_2:67260180-67260199 Msa1070930:intron 40.0%
GACAGGAATTATAGCATCAG+AGG - chr7_2:67260368-67260387 Msa1070930:intron 40.0%
GCAGTAGAAGAGAGTTATTC+CGG - chr7_2:67260408-67260427 Msa1070930:intron 40.0%
GTGGTATTTGATCCACTTGA+TGG - chr7_2:67260441-67260460 Msa1070930:intron 40.0%
AATTCCAAAAATGGAACCGG+TGG + chr7_2:67260493-67260512 None:intergenic 40.0%
GGGGCTGTAAATTCCAAAAA+TGG + chr7_2:67260502-67260521 None:intergenic 40.0%
TCAGGAAGACACTCATCATT+GGG + chr7_2:67260522-67260541 None:intergenic 40.0%
! TCGAAGCATTCACTTACTGT+GGG + chr7_2:67260564-67260583 None:intergenic 40.0%
! TTCGAAGCATTCACTTACTG+TGG + chr7_2:67260565-67260584 None:intergenic 40.0%
AGGAATCGAACTCGGTAATT+TGG - chr7_2:67260608-67260627 Msa1070930:CDS 40.0%
CATAGACGTGAAGGAGAATA+AGG + chr7_2:67259445-67259464 None:intergenic 40.0%
TCGAAGACACAAAGTTGGAA+GGG + chr7_2:67259469-67259488 None:intergenic 40.0%
GTTGAAGCAAGAACAAACAG+GGG - chr7_2:67259627-67259646 Msa1070930:three_prime_UTR 40.0%
TCTAACCTTACTGGTGTTCA+AGG - chr7_2:67259736-67259755 Msa1070930:CDS 40.0%
GGTCTTAGTAATCCAGAGTT+CGG + chr7_2:67259856-67259875 None:intergenic 40.0%
GACCTCTTTCTCTTAGAAAC+TGG - chr7_2:67259872-67259891 Msa1070930:CDS 40.0%
CGGCTAATGTTAAACCAACT+TGG - chr7_2:67259966-67259985 Msa1070930:intron 40.0%
TCTCCGGTATCAATTTAGGT+GGG - chr7_2:67260055-67260074 Msa1070930:intron 40.0%
TAGCCCACCTAAATTGATAC+CGG + chr7_2:67260061-67260080 None:intergenic 40.0%
TATTATCCGCAGTCGTGATT+TGG + chr7_2:67260174-67260193 None:intergenic 40.0%
GACTGCGGATAATATGCTAA+AGG - chr7_2:67260180-67260199 Msa1070930:intron 40.0%
GACAGGAATTATAGCATCAG+AGG - chr7_2:67260368-67260387 Msa1070930:intron 40.0%
GCAGTAGAAGAGAGTTATTC+CGG - chr7_2:67260408-67260427 Msa1070930:intron 40.0%
GTGGTATTTGATCCACTTGA+TGG - chr7_2:67260441-67260460 Msa1070930:intron 40.0%
AATTCCAAAAATGGAACCGG+TGG + chr7_2:67260493-67260512 None:intergenic 40.0%
GGGGCTGTAAATTCCAAAAA+TGG + chr7_2:67260502-67260521 None:intergenic 40.0%
TCAGGAAGACACTCATCATT+GGG + chr7_2:67260522-67260541 None:intergenic 40.0%
! TCGAAGCATTCACTTACTGT+GGG + chr7_2:67260564-67260583 None:intergenic 40.0%
! TTCGAAGCATTCACTTACTG+TGG + chr7_2:67260565-67260584 None:intergenic 40.0%
AGGAATCGAACTCGGTAATT+TGG - chr7_2:67260608-67260627 Msa1070930:CDS 40.0%
GTCGAAGACACAAAGTTGGA+AGG + chr7_2:67259470-67259489 None:intergenic 45.0%
TCGTGTCGAAGACACAAAGT+TGG + chr7_2:67259474-67259493 None:intergenic 45.0%
! AAAAAGCATGTGAGTGGCTC+TGG - chr7_2:67259517-67259536 Msa1070930:three_prime_UTR 45.0%
! CCTCGGCCATGAAACTTTTT+AGG + chr7_2:67259908-67259927 None:intergenic 45.0%
CCTAAAAAGTTTCATGGCCG+AGG - chr7_2:67259905-67259924 Msa1070930:CDS 45.0%
!! TTGGGTTGGCCTACTAGTAT+TGG - chr7_2:67259985-67260004 Msa1070930:intron 45.0%
!! TTGGCCTACTAGTATTGGCT+TGG - chr7_2:67259990-67260009 Msa1070930:intron 45.0%
!! TGGCCTACTAGTATTGGCTT+GGG - chr7_2:67259991-67260010 Msa1070930:intron 45.0%
CTCTCCGGTATCAATTTAGG+TGG - chr7_2:67260054-67260073 Msa1070930:intron 45.0%
TGCAATCCAAATCACGACTG+CGG - chr7_2:67260165-67260184 Msa1070930:intron 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG - chr7_2:67260346-67260365 Msa1070930:intron 45.0%
TAACTCTCTTCTACTGCCAC+TGG + chr7_2:67260405-67260424 None:intergenic 45.0%
GGACACTGCAGCATCAATAT+TGG + chr7_2:67260472-67260491 None:intergenic 45.0%
CAGGAAGACACTCATCATTG+GGG + chr7_2:67260521-67260540 None:intergenic 45.0%
GTCAGGAAGACACTCATCAT+TGG + chr7_2:67260523-67260542 None:intergenic 45.0%
! CGAAGCATTCACTTACTGTG+GGG + chr7_2:67260563-67260582 None:intergenic 45.0%
TCGAACTCGGTAATTTGGAG+TGG - chr7_2:67260613-67260632 Msa1070930:intron 45.0%
! CGAACTCGGTAATTTGGAGT+GGG - chr7_2:67260614-67260633 Msa1070930:intron 45.0%
GTAAACGAGTCTACGTCTTC+AGG + chr7_2:67260640-67260659 None:intergenic 45.0%
GTCGAAGACACAAAGTTGGA+AGG + chr7_2:67259470-67259489 None:intergenic 45.0%
TCGTGTCGAAGACACAAAGT+TGG + chr7_2:67259474-67259493 None:intergenic 45.0%
! AAAAAGCATGTGAGTGGCTC+TGG - chr7_2:67259517-67259536 Msa1070930:three_prime_UTR 45.0%
! CCTCGGCCATGAAACTTTTT+AGG + chr7_2:67259908-67259927 None:intergenic 45.0%
CCTAAAAAGTTTCATGGCCG+AGG - chr7_2:67259905-67259924 Msa1070930:CDS 45.0%
!! TTGGGTTGGCCTACTAGTAT+TGG - chr7_2:67259985-67260004 Msa1070930:intron 45.0%
!! TTGGCCTACTAGTATTGGCT+TGG - chr7_2:67259990-67260009 Msa1070930:intron 45.0%
!! TGGCCTACTAGTATTGGCTT+GGG - chr7_2:67259991-67260010 Msa1070930:intron 45.0%
CTCTCCGGTATCAATTTAGG+TGG - chr7_2:67260054-67260073 Msa1070930:intron 45.0%
TGCAATCCAAATCACGACTG+CGG - chr7_2:67260165-67260184 Msa1070930:intron 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG - chr7_2:67260346-67260365 Msa1070930:intron 45.0%
TAACTCTCTTCTACTGCCAC+TGG + chr7_2:67260405-67260424 None:intergenic 45.0%
GGACACTGCAGCATCAATAT+TGG + chr7_2:67260472-67260491 None:intergenic 45.0%
CAGGAAGACACTCATCATTG+GGG + chr7_2:67260521-67260540 None:intergenic 45.0%
GTCAGGAAGACACTCATCAT+TGG + chr7_2:67260523-67260542 None:intergenic 45.0%
! CGAAGCATTCACTTACTGTG+GGG + chr7_2:67260563-67260582 None:intergenic 45.0%
TCGAACTCGGTAATTTGGAG+TGG - chr7_2:67260613-67260632 Msa1070930:intron 45.0%
! CGAACTCGGTAATTTGGAGT+GGG - chr7_2:67260614-67260633 Msa1070930:intron 45.0%
GTAAACGAGTCTACGTCTTC+AGG + chr7_2:67260640-67260659 None:intergenic 45.0%
TGGAAGGGACATAGACGTGA+AGG + chr7_2:67259454-67259473 None:intergenic 50.0%
CAGCACCTTGAACACCAGTA+AGG + chr7_2:67259744-67259763 None:intergenic 50.0%
TTTGAACTAGGGCCGAACTC+TGG - chr7_2:67259841-67259860 Msa1070930:CDS 50.0%
ACTAGTAGGCCAACCCAAGT+TGG + chr7_2:67259983-67260002 None:intergenic 50.0%
GGTCCCAAGCCAATACTAGT+AGG + chr7_2:67259997-67260016 None:intergenic 50.0%
!! ACTAGTATTGGCTTGGGACC+TGG - chr7_2:67259997-67260016 Msa1070930:intron 50.0%
!! CTAGTATTGGCTTGGGACCT+GGG - chr7_2:67259998-67260017 Msa1070930:intron 50.0%
TCGAACCTGAGACCTTGAGA+AGG + chr7_2:67260032-67260051 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - chr7_2:67260039-67260058 Msa1070930:intron 50.0%
ATTGATGCTGCAGTGTCCAC+CGG - chr7_2:67260474-67260493 Msa1070930:intron 50.0%
!!! GTGTCCACCGGTTCCATTTT+TGG - chr7_2:67260486-67260505 Msa1070930:CDS 50.0%
TCAGACTCATCACTGAGGTC+AGG + chr7_2:67260540-67260559 None:intergenic 50.0%
TGGAAGGGACATAGACGTGA+AGG + chr7_2:67259454-67259473 None:intergenic 50.0%
CAGCACCTTGAACACCAGTA+AGG + chr7_2:67259744-67259763 None:intergenic 50.0%
TTTGAACTAGGGCCGAACTC+TGG - chr7_2:67259841-67259860 Msa1070930:CDS 50.0%
ACTAGTAGGCCAACCCAAGT+TGG + chr7_2:67259983-67260002 None:intergenic 50.0%
GGTCCCAAGCCAATACTAGT+AGG + chr7_2:67259997-67260016 None:intergenic 50.0%
!! ACTAGTATTGGCTTGGGACC+TGG - chr7_2:67259997-67260016 Msa1070930:intron 50.0%
!! CTAGTATTGGCTTGGGACCT+GGG - chr7_2:67259998-67260017 Msa1070930:intron 50.0%
TCGAACCTGAGACCTTGAGA+AGG + chr7_2:67260032-67260051 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - chr7_2:67260039-67260058 Msa1070930:intron 50.0%
ATTGATGCTGCAGTGTCCAC+CGG - chr7_2:67260474-67260493 Msa1070930:intron 50.0%
!!! GTGTCCACCGGTTCCATTTT+TGG - chr7_2:67260486-67260505 Msa1070930:CDS 50.0%
TCAGACTCATCACTGAGGTC+AGG + chr7_2:67260540-67260559 None:intergenic 50.0%
!! AAGCATGTGAGTGGCTCTGG+AGG - chr7_2:67259520-67259539 Msa1070930:three_prime_UTR 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG - chr7_2:67259534-67259553 Msa1070930:three_prime_UTR 55.0%
GGAGTGAGATGCATGGCTGT+TGG - chr7_2:67259541-67259560 Msa1070930:three_prime_UTR 55.0%
! TTGAGAAGGAGCACACTCCC+AGG + chr7_2:67260018-67260037 None:intergenic 55.0%
! TGGGAGTGTGCTCCTTCTCA+AGG - chr7_2:67260017-67260036 Msa1070930:intron 55.0%
GTGCTCCTTCTCAAGGTCTC+AGG - chr7_2:67260024-67260043 Msa1070930:intron 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG - chr7_2:67260351-67260370 Msa1070930:intron 55.0%
AGAGGAAGAGGATGTGCCAG+TGG - chr7_2:67260386-67260405 Msa1070930:intron 55.0%
TGGGGTCAGACTCATCACTG+AGG + chr7_2:67260545-67260564 None:intergenic 55.0%
!! AAGCATGTGAGTGGCTCTGG+AGG - chr7_2:67259520-67259539 Msa1070930:three_prime_UTR 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG - chr7_2:67259534-67259553 Msa1070930:three_prime_UTR 55.0%
GGAGTGAGATGCATGGCTGT+TGG - chr7_2:67259541-67259560 Msa1070930:three_prime_UTR 55.0%
! TTGAGAAGGAGCACACTCCC+AGG + chr7_2:67260018-67260037 None:intergenic 55.0%
! TGGGAGTGTGCTCCTTCTCA+AGG - chr7_2:67260017-67260036 Msa1070930:intron 55.0%
GTGCTCCTTCTCAAGGTCTC+AGG - chr7_2:67260024-67260043 Msa1070930:intron 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG - chr7_2:67260351-67260370 Msa1070930:intron 55.0%
AGAGGAAGAGGATGTGCCAG+TGG - chr7_2:67260386-67260405 Msa1070930:intron 55.0%
TGGGGTCAGACTCATCACTG+AGG + chr7_2:67260545-67260564 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 67259391 67260883 67259391 ID=Msa1070930;Name=Msa1070930
chr7_2 mRNA 67259391 67260883 67259391 ID=Msa1070930-mRNA-1;Parent=Msa1070930;Name=Msa1070930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.33|1|0.5|0.33|3|278|216
chr7_2 exon 67259391 67259938 67259391 ID=Msa1070930-mRNA-1:exon:14574;Parent=Msa1070930-mRNA-1
chr7_2 exon 67260476 67260627 67260476 ID=Msa1070930-mRNA-1:exon:14573;Parent=Msa1070930-mRNA-1
chr7_2 exon 67260655 67260883 67260655 ID=Msa1070930-mRNA-1:exon:14572;Parent=Msa1070930-mRNA-1
chr7_2 CDS 67260655 67260883 67260655 ID=Msa1070930-mRNA-1:cds;Parent=Msa1070930-mRNA-1
chr7_2 CDS 67260476 67260627 67260476 ID=Msa1070930-mRNA-1:cds;Parent=Msa1070930-mRNA-1
chr7_2 CDS 67259669 67259938 67259669 ID=Msa1070930-mRNA-1:cds;Parent=Msa1070930-mRNA-1
chr7_2 three_prime_UTR 67259391 67259668 67259391 ID=Msa1070930-mRNA-1:three_prime_utr;Parent=Msa1070930-mRNA-1
Gene Sequence

>Msa1070930

ATGGTTGCAATGGCAGCAGCAACAGCATCATCACAGTTAATATTCTCAAAACCTTATTCTCCTTCACGTCTATGTCCCTTCCAACTTTGTGTCTTCGACACGAAATCTGTGTTATCAAGTTCAAGAAAAAAGCATGTGAGTGGCTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTACTGAGACAAAGAAAAAGAGTAGTTACGAGCTTATAACATTGACTGGGGTTATTGATGCTGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCTGTAAATATTCAAGGGGAAGACCAGAAAAAACTTGATGTATTCTCAAATTGTTTGAGGTCAAGTGGGAGGACAGGAATTATAGCATCAGAGGAAGAGGATGTGCCAGTGGCAGTAGAAGAGAGTTATTCCGGAAACTACATTGTGGTATTTGATCCACTTGATGGTTCATCCAATATTGATGCTGCAGTGTCCACCGGTTCCATTTTTGGAATTTACAGCCCCAATGATGAGTGTCTTCCTGACCTCAGTGATGAGTCTGACCCCACAGTAAGTGAATGCTTCGAAATTGATTGTTTTCATTTATGA

Protein sequence

>Msa1070930

MVAMAAATASSQLIFSKPYSPSRLCPFQLCVFDTKSVLSSSRKKHVSGSGGVRCMAVGEVATETKKKSSYELITLTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLPDLSDESDPTVSECFEIDCFHL*