Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0905450 | XP_003618513.1 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 5.63e-178 | 498 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0905450 | sp|O80622|EXP15_ARATH | 76.190 | 252 | 48 | 3 | 1 | 242 | 3 | 252 | 1.88e-137 | 389 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000220 | Msa0905450 | 0.821786 | 3.354333e-53 | -8.615850e-47 |
Msa0005160 | Msa0905450 | 0.800657 | 1.300475e-48 | -8.615850e-47 |
Msa0018870 | Msa0905450 | 0.806075 | 9.809349e-50 | -8.615850e-47 |
Msa0033580 | Msa0905450 | 0.803988 | 2.680478e-49 | -8.615850e-47 |
Msa0034320 | Msa0905450 | 0.809312 | 2.013528e-50 | -8.615850e-47 |
Msa0050560 | Msa0905450 | 0.802247 | 6.141339e-49 | -8.615850e-47 |
Msa0072910 | Msa0905450 | 0.824630 | 7.273258e-54 | -8.615850e-47 |
Msa0081300 | Msa0905450 | 0.801088 | 1.061992e-48 | -8.615850e-47 |
Msa0092750 | Msa0905450 | 0.822767 | 1.986630e-53 | -8.615850e-47 |
Msa0094670 | Msa0905450 | 0.801798 | 7.596193e-49 | -8.615850e-47 |
Msa0098700 | Msa0905450 | 0.803018 | 4.258136e-49 | -8.615850e-47 |
Msa0101210 | Msa0905450 | 0.800455 | 1.429827e-48 | -8.615850e-47 |
Msa0107460 | Msa0905450 | 0.816320 | 5.877715e-52 | -8.615850e-47 |
Msa0109870 | Msa0905450 | 0.801481 | 8.823714e-49 | -8.615850e-47 |
Msa0604700 | Msa0905450 | 0.812656 | 3.798955e-51 | -8.615850e-47 |
Msa0606140 | Msa0905450 | 0.831638 | 1.490411e-55 | -8.615850e-47 |
Msa0621380 | Msa0905450 | 0.806922 | 6.502434e-50 | -8.615850e-47 |
Msa0631340 | Msa0905450 | 0.800636 | 1.313343e-48 | -8.615850e-47 |
Msa0643800 | Msa0905450 | 0.807844 | 4.144663e-50 | -8.615850e-47 |
Msa0647110 | Msa0905450 | 0.813414 | 2.591118e-51 | -8.615850e-47 |
Msa0662400 | Msa0905450 | 0.800262 | 1.565529e-48 | -8.615850e-47 |
Msa0667710 | Msa0905450 | 0.802639 | 5.098593e-49 | -8.615850e-47 |
Msa0668160 | Msa0905450 | 0.813450 | 2.543682e-51 | -8.615850e-47 |
Msa0683650 | Msa0905450 | 0.800216 | 1.599621e-48 | -8.615850e-47 |
Msa0687540 | Msa0905450 | 0.804337 | 2.267555e-49 | -8.615850e-47 |
Msa0687620 | Msa0905450 | 0.817903 | 2.590708e-52 | -8.615850e-47 |
Msa0690350 | Msa0905450 | 0.805194 | 1.501335e-49 | -8.615850e-47 |
Msa0712500 | Msa0905450 | 0.826186 | 3.114454e-54 | -8.615850e-47 |
Msa0719340 | Msa0905450 | 0.825938 | 3.567938e-54 | -8.615850e-47 |
Msa0729380 | Msa0905450 | 0.818309 | 2.096835e-52 | -8.615850e-47 |
Msa0742130 | Msa0905450 | 0.820821 | 5.602588e-53 | -8.615850e-47 |
Msa0755570 | Msa0905450 | 0.801389 | 9.215697e-49 | -8.615850e-47 |
Msa0761930 | Msa0905450 | 0.804834 | 1.785894e-49 | -8.615850e-47 |
Msa0772150 | Msa0905450 | 0.816981 | 4.178664e-52 | -8.615850e-47 |
Msa0776290 | Msa0905450 | 0.806954 | 6.401721e-50 | -8.615850e-47 |
Msa0786090 | Msa0905450 | 0.806819 | 6.835138e-50 | -8.615850e-47 |
Msa0804340 | Msa0905450 | 0.808945 | 2.413694e-50 | -8.615850e-47 |
Msa0808420 | Msa0905450 | 0.818673 | 1.733578e-52 | -8.615850e-47 |
Msa0823300 | Msa0905450 | 0.804994 | 1.653703e-49 | -8.615850e-47 |
Msa0835030 | Msa0905450 | 0.800346 | 1.504619e-48 | -8.615850e-47 |
Msa0836200 | Msa0905450 | 0.804322 | 2.283460e-49 | -8.615850e-47 |
Msa0837590 | Msa0905450 | 0.806118 | 9.609302e-50 | -8.615850e-47 |
Msa0842270 | Msa0905450 | 0.802013 | 6.861402e-49 | -8.615850e-47 |
Msa0131390 | Msa0905450 | 0.808199 | 3.481906e-50 | -8.615850e-47 |
Msa0141670 | Msa0905450 | 0.808616 | 2.837123e-50 | -8.615850e-47 |
Msa0156780 | Msa0905450 | 0.824241 | 8.980940e-54 | -8.615850e-47 |
Msa0163300 | Msa0905450 | 0.801069 | 1.071318e-48 | -8.615850e-47 |
Msa0173610 | Msa0905450 | 0.816291 | 5.964942e-52 | -8.615850e-47 |
Msa0177490 | Msa0905450 | 0.806781 | 6.962741e-50 | -8.615850e-47 |
Msa0185550 | Msa0905450 | 0.827133 | 1.851431e-54 | -8.615850e-47 |
Msa0190840 | Msa0905450 | 0.807154 | 5.805790e-50 | -8.615850e-47 |
Msa0192020 | Msa0905450 | 0.809693 | 1.668220e-50 | -8.615850e-47 |
Msa0197900 | Msa0905450 | 0.803947 | 2.733461e-49 | -8.615850e-47 |
Msa0203330 | Msa0905450 | 0.863201 | 2.948487e-64 | -8.615850e-47 |
Msa0218860 | Msa0905450 | 0.817009 | 4.117951e-52 | -8.615850e-47 |
Msa0224980 | Msa0905450 | 0.814503 | 1.490181e-51 | -8.615850e-47 |
Msa0225030 | Msa0905450 | 0.812963 | 3.254102e-51 | -8.615850e-47 |
Msa0234930 | Msa0905450 | 0.804885 | 1.742950e-49 | -8.615850e-47 |
Msa0365150 | Msa0905450 | 0.802180 | 6.339348e-49 | -8.615850e-47 |
Msa0370180 | Msa0905450 | 0.804866 | 1.758821e-49 | -8.615850e-47 |
Msa0372250 | Msa0905450 | 0.810609 | 1.058894e-50 | -8.615850e-47 |
Msa0373950 | Msa0905450 | 0.813281 | 2.770815e-51 | -8.615850e-47 |
Msa0380420 | Msa0905450 | 0.814577 | 1.435499e-51 | -8.615850e-47 |
Msa0386390 | Msa0905450 | 0.815538 | 8.782284e-52 | -8.615850e-47 |
Msa0398850 | Msa0905450 | 0.810199 | 1.297648e-50 | -8.615850e-47 |
Msa0403670 | Msa0905450 | 0.820649 | 6.135385e-53 | -8.615850e-47 |
Msa0405040 | Msa0905450 | 0.821056 | 4.945342e-53 | -8.615850e-47 |
Msa0413180 | Msa0905450 | 0.804625 | 1.974462e-49 | -8.615850e-47 |
Msa0414990 | Msa0905450 | 0.811161 | 8.041348e-51 | -8.615850e-47 |
Msa0420280 | Msa0905450 | 0.802772 | 4.786650e-49 | -8.615850e-47 |
Msa0421100 | Msa0905450 | 0.818409 | 1.990252e-52 | -8.615850e-47 |
Msa0433270 | Msa0905450 | 0.820674 | 6.053912e-53 | -8.615850e-47 |
Msa0434630 | Msa0905450 | 0.816012 | 6.884181e-52 | -8.615850e-47 |
Msa0455200 | Msa0905450 | 0.803287 | 3.745514e-49 | -8.615850e-47 |
Msa0457380 | Msa0905450 | 0.812483 | 4.144267e-51 | -8.615850e-47 |
Msa0465640 | Msa0905450 | 0.802675 | 5.013214e-49 | -8.615850e-47 |
Msa0471090 | Msa0905450 | 0.805347 | 1.394851e-49 | -8.615850e-47 |
Msa0475740 | Msa0905450 | 0.801286 | 9.673584e-49 | -8.615850e-47 |
Msa0476150 | Msa0905450 | 0.823812 | 1.132448e-53 | -8.615850e-47 |
Msa0476180 | Msa0905450 | 0.800721 | 1.261651e-48 | -8.615850e-47 |
Msa0479790 | Msa0905450 | 0.811870 | 5.638124e-51 | -8.615850e-47 |
Msa0482020 | Msa0905450 | 0.805048 | 1.610980e-49 | -8.615850e-47 |
Msa0244320 | Msa0905450 | 0.817259 | 3.618258e-52 | -8.615850e-47 |
Msa0249670 | Msa0905450 | 0.813829 | 2.099747e-51 | -8.615850e-47 |
Msa0273270 | Msa0905450 | 0.806071 | 9.830678e-50 | -8.615850e-47 |
Msa0273550 | Msa0905450 | 0.809275 | 2.050538e-50 | -8.615850e-47 |
Msa0278080 | Msa0905450 | 0.823672 | 1.221091e-53 | -8.615850e-47 |
Msa0296610 | Msa0905450 | 0.803704 | 3.069683e-49 | -8.615850e-47 |
Msa0307750 | Msa0905450 | 0.802231 | 6.189197e-49 | -8.615850e-47 |
Msa0314750 | Msa0905450 | 0.804609 | 1.989686e-49 | -8.615850e-47 |
Msa0317630 | Msa0905450 | 0.813054 | 3.107542e-51 | -8.615850e-47 |
Msa0321230 | Msa0905450 | 0.812616 | 3.876263e-51 | -8.615850e-47 |
Msa0498320 | Msa0905450 | 0.813071 | 3.081605e-51 | -8.615850e-47 |
Msa0500510 | Msa0905450 | 0.806712 | 7.198677e-50 | -8.615850e-47 |
Msa0504730 | Msa0905450 | 0.807357 | 5.259346e-50 | -8.615850e-47 |
Msa0508770 | Msa0905450 | 0.807201 | 5.673445e-50 | -8.615850e-47 |
Msa0513660 | Msa0905450 | 0.802969 | 4.358650e-49 | -8.615850e-47 |
Msa0515830 | Msa0905450 | 0.811032 | 8.572997e-51 | -8.615850e-47 |
Msa0522870 | Msa0905450 | 0.801722 | 7.872502e-49 | -8.615850e-47 |
Msa0528870 | Msa0905450 | 0.802980 | 4.336417e-49 | -8.615850e-47 |
Msa0532880 | Msa0905450 | 0.811425 | 7.045108e-51 | -8.615850e-47 |
Msa0532910 | Msa0905450 | 0.807947 | 3.940844e-50 | -8.615850e-47 |
Msa0550720 | Msa0905450 | 0.801352 | 9.376646e-49 | -8.615850e-47 |
Msa0553230 | Msa0905450 | 0.820360 | 7.146904e-53 | -8.615850e-47 |
Msa0553350 | Msa0905450 | 0.811637 | 6.336120e-51 | -8.615850e-47 |
Msa0553520 | Msa0905450 | 0.820834 | 5.562957e-53 | -8.615850e-47 |
Msa0567290 | Msa0905450 | 0.817428 | 3.314781e-52 | -8.615850e-47 |
Msa0568810 | Msa0905450 | 0.831417 | 1.689494e-55 | -8.615850e-47 |
Msa0572820 | Msa0905450 | 0.805217 | 1.485141e-49 | -8.615850e-47 |
Msa0573300 | Msa0905450 | 0.815521 | 8.858267e-52 | -8.615850e-47 |
Msa0574170 | Msa0905450 | 0.807257 | 5.520217e-50 | -8.615850e-47 |
Msa0595780 | Msa0905450 | 0.806178 | 9.332877e-50 | -8.615850e-47 |
Msa0846180 | Msa0905450 | 0.804135 | 2.497990e-49 | -8.615850e-47 |
Msa0868140 | Msa0905450 | 0.812525 | 4.058926e-51 | -8.615850e-47 |
Msa0872100 | Msa0905450 | 0.850015 | 2.231672e-60 | -8.615850e-47 |
Msa0872110 | Msa0905450 | 0.910091 | 2.758730e-82 | -8.615850e-47 |
Msa0873830 | Msa0905450 | 0.802910 | 4.484077e-49 | -8.615850e-47 |
Msa0875130 | Msa0905450 | 0.818255 | 2.156283e-52 | -8.615850e-47 |
Msa0880170 | Msa0905450 | 0.800207 | 1.606157e-48 | -8.615850e-47 |
Msa0894530 | Msa0905450 | 0.812614 | 3.879601e-51 | -8.615850e-47 |
Msa0901140 | Msa0905450 | 0.801771 | 7.693764e-49 | -8.615850e-47 |
Msa0905450 | Msa0907520 | 0.815695 | 8.101318e-52 | -8.615850e-47 |
Msa0905450 | Msa0931730 | 0.805920 | 1.057301e-49 | -8.615850e-47 |
Msa0905450 | Msa0959710 | 0.808556 | 2.922812e-50 | -8.615850e-47 |
Msa0905450 | Msa0964570 | 0.827790 | 1.288085e-54 | -8.615850e-47 |
Msa0905450 | Msa0974660 | 0.800747 | 1.246578e-48 | -8.615850e-47 |
Msa0905450 | Msa0976950 | 0.802985 | 4.326365e-49 | -8.615850e-47 |
Msa0905450 | Msa0978440 | 0.813581 | 2.381258e-51 | -8.615850e-47 |
Msa0905450 | Msa1000470 | 0.829971 | 3.818739e-55 | -8.615850e-47 |
Msa0905450 | Msa1002980 | 0.814299 | 1.653723e-51 | -8.615850e-47 |
Msa0905450 | Msa1011060 | 0.826293 | 2.937428e-54 | -8.615850e-47 |
Msa0905450 | Msa1017590 | 0.832606 | 8.587021e-56 | -8.615850e-47 |
Msa0905450 | Msa1030440 | 0.816541 | 5.242832e-52 | -8.615850e-47 |
Msa0905450 | Msa1032970 | 0.808835 | 2.548085e-50 | -8.615850e-47 |
Msa0905450 | Msa1033160 | 0.824203 | 9.165735e-54 | -8.615850e-47 |
Msa0905450 | Msa1038040 | 0.820595 | 6.312447e-53 | -8.615850e-47 |
Msa0905450 | Msa1044040 | 0.817231 | 3.670358e-52 | -8.615850e-47 |
Msa0905450 | Msa1052600 | 0.812579 | 3.948102e-51 | -8.615850e-47 |
Msa0905450 | Msa1061520 | 0.828494 | 8.714180e-55 | -8.615850e-47 |
Msa0905450 | Msa1068110 | 0.810449 | 1.146185e-50 | -8.615850e-47 |
Msa0905450 | Msa1069450 | 0.819077 | 1.403213e-52 | -8.615850e-47 |
Msa0905450 | Msa1070900 | 0.811656 | 6.277421e-51 | -8.615850e-47 |
Msa0905450 | Msa1070930 | 0.834482 | 2.921983e-56 | -8.615850e-47 |
Msa0905450 | Msa1072640 | 0.820635 | 6.179953e-53 | -8.615850e-47 |
Msa0905450 | Msa1088690 | 0.835057 | 2.094271e-56 | -8.615850e-47 |
Msa0905450 | Msa1106830 | 0.826813 | 2.208042e-54 | -8.615850e-47 |
Msa0905450 | Msa1128350 | 0.836775 | 7.677260e-57 | -8.615850e-47 |
Msa0905450 | Msa1150250 | 0.834928 | 2.257408e-56 | -8.615850e-47 |
Msa0905450 | Msa1151120 | 0.800766 | 1.235544e-48 | -8.615850e-47 |
Msa0905450 | Msa1154130 | 0.803540 | 3.320851e-49 | -8.615850e-47 |
Msa0905450 | Msa1180410 | 0.800416 | 1.456075e-48 | -8.615850e-47 |
Msa0905450 | Msa1184640 | 0.809833 | 1.556449e-50 | -8.615850e-47 |
Msa0905450 | Msa1206440 | 0.822032 | 2.942496e-53 | -8.615850e-47 |
Msa0905450 | Msa1209390 | 0.812730 | 3.659586e-51 | -8.615850e-47 |
Msa0905450 | Msa1209650 | 0.808249 | 3.398031e-50 | -8.615850e-47 |
Msa0905450 | Msa1218720 | 0.808402 | 3.152257e-50 | -8.615850e-47 |
Msa0905450 | Msa1229050 | 0.802860 | 4.591520e-49 | -8.615850e-47 |
Msa0905450 | Msa1238710 | 0.808855 | 2.522853e-50 | -8.615850e-47 |
Msa0905450 | Msa1243860 | 0.814808 | 1.275639e-51 | -8.615850e-47 |
Msa0905450 | Msa1244180 | 0.823663 | 1.226847e-53 | -8.615850e-47 |
Msa0905450 | Msa1248400 | 0.814823 | 1.266384e-51 | -8.615850e-47 |
Msa0905450 | Msa1271490 | 0.801338 | 9.440759e-49 | -8.615850e-47 |
Msa0905450 | Msa1274310 | 0.806340 | 8.628427e-50 | -8.615850e-47 |
Msa0905450 | Msa1279340 | 0.804017 | 2.643413e-49 | -8.615850e-47 |
Msa0905450 | Msa1280020 | 0.806684 | 7.297931e-50 | -8.615850e-47 |
Msa0905450 | Msa1298740 | 0.817434 | 3.303792e-52 | -8.615850e-47 |
Msa0905450 | Msa1306540 | 0.803004 | 4.286543e-49 | -8.615850e-47 |
Msa0905450 | Msa1309910 | 0.817091 | 3.946722e-52 | -8.615850e-47 |
Msa0905450 | Msa1310620 | 0.803062 | 4.169590e-49 | -8.615850e-47 |
Msa0905450 | Msa1319520 | 0.806469 | 8.102849e-50 | -8.615850e-47 |
Msa0905450 | Msa1330280 | 0.802328 | 5.911744e-49 | -8.615850e-47 |
Msa0905450 | Msa1350350 | 0.808548 | 2.933564e-50 | -8.615850e-47 |
Msa0905450 | Msa1361090 | 0.808559 | 2.917816e-50 | -8.615850e-47 |
Msa0905450 | Msa1374810 | 0.802125 | 6.506975e-49 | -8.615850e-47 |
Msa0905450 | Msa1375630 | 0.817365 | 3.424863e-52 | -8.615850e-47 |
Msa0905450 | Msa1376530 | 0.802943 | 4.413450e-49 | -8.615850e-47 |
Msa0905450 | Msa1376590 | 0.809177 | 2.152409e-50 | -8.615850e-47 |
Msa0905450 | Msa1403900 | 0.803839 | 2.877600e-49 | -8.615850e-47 |
Msa0905450 | Msa1405770 | 0.802026 | 6.818349e-49 | -8.615850e-47 |
Msa0905450 | Msa1407710 | 0.804769 | 1.842559e-49 | -8.615850e-47 |
Msa0905450 | Msa1416460 | 0.802431 | 5.628059e-49 | -8.615850e-47 |
Msa0905450 | Msa1420600 | 0.816291 | 5.964942e-52 | -8.615850e-47 |
Msa0905450 | Msa1420630 | 0.808576 | 2.893465e-50 | -8.615850e-47 |
Msa0905450 | Msa1424240 | 0.805709 | 1.171219e-49 | -8.615850e-47 |
Msa0905450 | Msa1425540 | 0.804673 | 1.929987e-49 | -8.615850e-47 |
Msa0905450 | Msa1425570 | 0.807470 | 4.976743e-50 | -8.615850e-47 |
Msa0905450 | Msa1430940 | 0.800846 | 1.190094e-48 | -8.615850e-47 |
Msa0905450 | Msa1444070 | 0.810090 | 1.370380e-50 | -8.615850e-47 |
Msa0905450 | Msa1449680 | 0.810574 | 1.077081e-50 | -8.615850e-47 |
Msa0905450 | Msa1451840 | 0.801012 | 1.100541e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0905450 | MtrunA17_Chr6g0453341 | 99.590 | 244 | 1 | 0 | 1 | 244 | 11 | 254 | 0.0 | 498 |
Msa0905450 | MtrunA17_Chr7g0217661 | 86.066 | 244 | 32 | 1 | 1 | 244 | 1 | 242 | 2.14e-155 | 431 |
Msa0905450 | MtrunA17_Chr5g0417701 | 74.800 | 250 | 52 | 3 | 1 | 242 | 1 | 247 | 1.84e-134 | 378 |
Msa0905450 | MtrunA17_Chr4g0042521 | 74.597 | 248 | 55 | 1 | 4 | 243 | 1 | 248 | 1.40e-133 | 376 |
Msa0905450 | MtrunA17_Chr3g0128801 | 79.464 | 224 | 38 | 1 | 27 | 242 | 30 | 253 | 6.00e-131 | 370 |
Msa0905450 | MtrunA17_Chr3g0092071 | 76.856 | 229 | 45 | 1 | 22 | 242 | 19 | 247 | 3.09e-130 | 367 |
Msa0905450 | MtrunA17_Chr3g0128791 | 79.018 | 224 | 39 | 1 | 27 | 242 | 30 | 253 | 8.68e-130 | 367 |
Msa0905450 | MtrunA17_Chr5g0432611 | 69.512 | 246 | 64 | 3 | 8 | 242 | 6 | 251 | 2.92e-126 | 358 |
Msa0905450 | MtrunA17_Chr3g0107311 | 68.504 | 254 | 68 | 3 | 1 | 242 | 1 | 254 | 2.48e-124 | 353 |
Msa0905450 | MtrunA17_Chr3g0107291 | 69.388 | 245 | 66 | 2 | 7 | 242 | 16 | 260 | 9.02e-123 | 349 |
Msa0905450 | MtrunA17_Chr7g0238681 | 69.333 | 225 | 59 | 2 | 28 | 242 | 32 | 256 | 1.16e-113 | 326 |
Msa0905450 | MtrunA17_Chr5g0435311 | 64.257 | 249 | 78 | 3 | 4 | 242 | 59 | 306 | 4.08e-113 | 327 |
Msa0905450 | MtrunA17_Chr4g0031621 | 62.698 | 252 | 84 | 2 | 1 | 242 | 5 | 256 | 1.43e-110 | 318 |
Msa0905450 | MtrunA17_Chr2g0328261 | 61.265 | 253 | 87 | 3 | 1 | 242 | 6 | 258 | 1.42e-109 | 316 |
Msa0905450 | MtrunA17_Chr1g0193631 | 64.889 | 225 | 67 | 4 | 28 | 240 | 30 | 254 | 1.04e-105 | 306 |
Msa0905450 | MtrunA17_Chr7g0271001 | 59.036 | 249 | 89 | 5 | 1 | 237 | 1 | 248 | 7.46e-102 | 296 |
Msa0905450 | MtrunA17_Chr1g0157061 | 59.908 | 217 | 76 | 3 | 35 | 240 | 22 | 238 | 5.57e-95 | 278 |
Msa0905450 | MtrunA17_Chr7g0218741 | 53.469 | 245 | 103 | 4 | 8 | 241 | 7 | 251 | 1.36e-89 | 265 |
Msa0905450 | MtrunA17_Chr7g0218751 | 58.824 | 221 | 83 | 2 | 28 | 240 | 28 | 248 | 1.47e-88 | 262 |
Msa0905450 | MtrunA17_Chr8g0360041 | 54.251 | 247 | 101 | 4 | 1 | 239 | 8 | 250 | 6.91e-88 | 261 |
Msa0905450 | MtrunA17_Chr4g0069711 | 54.464 | 224 | 89 | 4 | 28 | 240 | 61 | 282 | 1.40e-86 | 258 |
Msa0905450 | MtrunA17_Chr5g0433841 | 53.097 | 226 | 97 | 2 | 28 | 244 | 41 | 266 | 9.25e-85 | 253 |
Msa0905450 | MtrunA17_Chr4g0021561 | 47.451 | 255 | 120 | 4 | 1 | 242 | 3 | 256 | 2.17e-83 | 249 |
Msa0905450 | MtrunA17_Chr7g0218761 | 58.911 | 202 | 75 | 2 | 47 | 240 | 8 | 209 | 4.20e-82 | 244 |
Msa0905450 | MtrunA17_Chr5g0398271 | 54.464 | 224 | 90 | 4 | 28 | 240 | 37 | 259 | 1.62e-80 | 242 |
Msa0905450 | MtrunA17_Chr4g0057091 | 50.813 | 246 | 108 | 4 | 6 | 238 | 11 | 256 | 1.13e-79 | 240 |
Msa0905450 | MtrunA17_Chr8g0360721 | 57.789 | 199 | 76 | 2 | 47 | 237 | 17 | 215 | 1.92e-78 | 235 |
Msa0905450 | MtrunA17_Chr3g0109801 | 50.000 | 232 | 99 | 5 | 28 | 242 | 53 | 284 | 3.41e-74 | 227 |
Msa0905450 | MtrunA17_Chr4g0022851 | 54.839 | 124 | 46 | 4 | 1 | 114 | 1 | 124 | 6.83e-38 | 129 |
Msa0905450 | MtrunA17_Chr4g0022841 | 50.862 | 116 | 57 | 0 | 124 | 239 | 1 | 116 | 2.32e-37 | 127 |
Msa0905450 | MtrunA17_Chr2g0324191 | 44.898 | 147 | 69 | 4 | 6 | 142 | 8 | 152 | 8.14e-36 | 124 |
Msa0905450 | MtrunA17_Chr2g0324181 | 53.465 | 101 | 47 | 0 | 142 | 242 | 17 | 117 | 3.38e-33 | 116 |
Msa0905450 | MtrunA17_Chr2g0324221 | 33.778 | 225 | 133 | 7 | 28 | 240 | 35 | 255 | 5.10e-29 | 110 |
Msa0905450 | MtrunA17_Chr2g0324201 | 32.540 | 252 | 154 | 8 | 1 | 240 | 6 | 253 | 9.58e-28 | 106 |
Msa0905450 | MtrunA17_Chr4g0021641 | 32.751 | 229 | 138 | 8 | 28 | 244 | 41 | 265 | 9.28e-27 | 104 |
Msa0905450 | MtrunA17_Chr8g0359981 | 62.500 | 80 | 23 | 4 | 70 | 142 | 2 | 81 | 2.66e-26 | 99.0 |
Msa0905450 | MtrunA17_Chr4g0012801 | 33.624 | 229 | 127 | 9 | 25 | 237 | 39 | 258 | 7.57e-26 | 102 |
Msa0905450 | MtrunA17_Chr7g0231221 | 31.674 | 221 | 131 | 9 | 33 | 237 | 53 | 269 | 1.46e-23 | 95.9 |
Msa0905450 | MtrunA17_Chr7g0231211 | 32.143 | 224 | 128 | 10 | 30 | 237 | 49 | 264 | 1.97e-23 | 95.5 |
Msa0905450 | MtrunA17_Chr4g0055601 | 29.148 | 223 | 146 | 8 | 28 | 240 | 28 | 248 | 2.30e-19 | 84.3 |
Msa0905450 | MtrunA17_Chr8g0359971 | 50.649 | 77 | 37 | 1 | 163 | 238 | 1 | 77 | 3.38e-19 | 79.3 |
Msa0905450 | MtrunA17_Chr4g0055061 | 29.528 | 254 | 152 | 12 | 1 | 237 | 3 | 246 | 6.98e-18 | 80.1 |
Msa0905450 | MtrunA17_Chr5g0399811 | 26.613 | 248 | 164 | 10 | 3 | 240 | 9 | 248 | 3.47e-17 | 78.2 |
Msa0905450 | MtrunA17_Chr4g0055561 | 27.083 | 240 | 160 | 9 | 9 | 237 | 9 | 244 | 2.68e-16 | 75.9 |
Msa0905450 | MtrunA17_Chr1g0193571 | 59.259 | 54 | 22 | 0 | 187 | 240 | 4 | 57 | 3.80e-16 | 70.9 |
Msa0905450 | MtrunA17_Chr4g0038741 | 29.817 | 218 | 122 | 9 | 39 | 237 | 32 | 237 | 7.71e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0905450 | AT2G03090.1 | 76.190 | 252 | 48 | 3 | 1 | 242 | 3 | 252 | 1.91e-138 | 389 |
Msa0905450 | AT3G29030.1 | 83.028 | 218 | 36 | 1 | 28 | 244 | 38 | 255 | 1.01e-136 | 385 |
Msa0905450 | AT1G69530.2 | 76.000 | 250 | 51 | 2 | 1 | 242 | 1 | 249 | 2.65e-136 | 384 |
Msa0905450 | AT1G69530.1 | 76.000 | 250 | 51 | 2 | 1 | 242 | 1 | 249 | 2.65e-136 | 384 |
Msa0905450 | AT1G69530.3 | 76.423 | 246 | 49 | 2 | 1 | 238 | 1 | 245 | 5.49e-135 | 381 |
Msa0905450 | AT1G26770.1 | 76.400 | 250 | 49 | 2 | 1 | 242 | 1 | 248 | 1.27e-134 | 379 |
Msa0905450 | AT1G26770.2 | 76.400 | 250 | 49 | 2 | 1 | 242 | 11 | 258 | 1.84e-134 | 379 |
Msa0905450 | AT5G56320.1 | 68.775 | 253 | 66 | 3 | 1 | 242 | 1 | 251 | 3.37e-129 | 365 |
Msa0905450 | AT5G56320.2 | 68.775 | 253 | 66 | 3 | 1 | 242 | 1 | 251 | 3.37e-129 | 365 |
Msa0905450 | AT5G56320.3 | 68.775 | 253 | 66 | 3 | 1 | 242 | 1 | 251 | 1.13e-128 | 366 |
Msa0905450 | AT2G40610.1 | 68.924 | 251 | 66 | 4 | 2 | 242 | 5 | 253 | 1.85e-123 | 351 |
Msa0905450 | AT2G39700.1 | 66.667 | 243 | 70 | 3 | 11 | 242 | 13 | 255 | 2.14e-116 | 333 |
Msa0905450 | AT5G02260.1 | 70.667 | 225 | 56 | 2 | 28 | 242 | 32 | 256 | 4.76e-116 | 332 |
Msa0905450 | AT1G69530.4 | 67.600 | 250 | 42 | 3 | 1 | 242 | 1 | 219 | 7.41e-116 | 330 |
Msa0905450 | AT1G69530.5 | 71.304 | 230 | 55 | 3 | 1 | 222 | 1 | 227 | 3.93e-115 | 330 |
Msa0905450 | AT5G05290.1 | 63.200 | 250 | 82 | 3 | 2 | 242 | 7 | 255 | 4.37e-115 | 330 |
Msa0905450 | AT2G37640.1 | 70.222 | 225 | 57 | 2 | 28 | 242 | 36 | 260 | 9.46e-114 | 327 |
Msa0905450 | AT3G55500.1 | 62.109 | 256 | 83 | 4 | 1 | 242 | 3 | 258 | 5.17e-112 | 322 |
Msa0905450 | AT2G28950.1 | 64.453 | 256 | 76 | 4 | 1 | 242 | 1 | 255 | 5.94e-112 | 322 |
Msa0905450 | AT4G01630.1 | 59.036 | 249 | 90 | 4 | 1 | 237 | 1 | 249 | 1.12e-105 | 306 |
Msa0905450 | AT1G20190.1 | 64.159 | 226 | 70 | 3 | 24 | 238 | 22 | 247 | 4.78e-102 | 297 |
Msa0905450 | AT2G37640.2 | 67.788 | 208 | 57 | 2 | 45 | 242 | 28 | 235 | 4.82e-101 | 294 |
Msa0905450 | AT5G39280.1 | 55.708 | 219 | 91 | 1 | 28 | 240 | 54 | 272 | 9.23e-89 | 264 |
Msa0905450 | AT5G39300.1 | 55.708 | 219 | 91 | 1 | 28 | 240 | 55 | 273 | 3.13e-88 | 263 |
Msa0905450 | AT5G39270.1 | 56.164 | 219 | 90 | 1 | 28 | 240 | 58 | 276 | 5.64e-88 | 262 |
Msa0905450 | AT5G39290.1 | 55.251 | 219 | 92 | 1 | 28 | 240 | 58 | 276 | 4.94e-87 | 259 |
Msa0905450 | AT1G12560.1 | 52.893 | 242 | 104 | 3 | 6 | 237 | 14 | 255 | 2.00e-84 | 252 |
Msa0905450 | AT3G15370.1 | 51.383 | 253 | 112 | 7 | 1 | 243 | 1 | 252 | 1.10e-83 | 250 |
Msa0905450 | AT5G39310.1 | 55.204 | 221 | 92 | 2 | 27 | 240 | 89 | 309 | 2.30e-83 | 251 |
Msa0905450 | AT1G62980.1 | 55.357 | 224 | 88 | 4 | 28 | 240 | 31 | 253 | 3.87e-81 | 244 |
Msa0905450 | AT5G39260.1 | 50.813 | 246 | 110 | 3 | 6 | 240 | 14 | 259 | 8.47e-81 | 243 |
Msa0905450 | AT1G20190.2 | 60.963 | 187 | 62 | 3 | 63 | 238 | 2 | 188 | 1.41e-79 | 238 |
Msa0905450 | AT3G03220.1 | 50.000 | 224 | 103 | 2 | 28 | 242 | 40 | 263 | 3.28e-78 | 237 |
Msa0905450 | AT3G15370.2 | 46.290 | 283 | 111 | 8 | 1 | 243 | 1 | 282 | 5.82e-77 | 234 |
Msa0905450 | AT4G38210.1 | 47.431 | 253 | 120 | 4 | 2 | 242 | 3 | 254 | 3.52e-75 | 229 |
Msa0905450 | AT4G28250.1 | 34.413 | 247 | 145 | 9 | 7 | 240 | 15 | 257 | 4.15e-31 | 115 |
Msa0905450 | AT2G20750.1 | 33.186 | 226 | 137 | 7 | 28 | 240 | 40 | 264 | 1.26e-30 | 115 |
Msa0905450 | AT4G28250.2 | 33.333 | 246 | 143 | 9 | 7 | 240 | 15 | 251 | 8.78e-28 | 107 |
Msa0905450 | AT1G65680.1 | 32.000 | 225 | 134 | 8 | 28 | 237 | 47 | 267 | 4.26e-25 | 100 |
Msa0905450 | AT2G20750.2 | 35.152 | 165 | 95 | 5 | 28 | 181 | 40 | 203 | 3.05e-23 | 94.4 |
Msa0905450 | AT1G65681.1 | 32.536 | 209 | 124 | 9 | 42 | 237 | 12 | 216 | 4.85e-22 | 91.3 |
Msa0905450 | AT2G45110.1 | 32.301 | 226 | 126 | 9 | 31 | 237 | 36 | 253 | 8.89e-22 | 91.3 |
Msa0905450 | AT4G28250.4 | 34.211 | 190 | 106 | 7 | 7 | 186 | 15 | 195 | 6.71e-21 | 87.8 |
Msa0905450 | AT4G28250.3 | 34.831 | 178 | 97 | 7 | 14 | 181 | 22 | 190 | 1.96e-20 | 86.7 |
Msa0905450 | AT3G60570.1 | 28.049 | 246 | 158 | 7 | 6 | 237 | 11 | 251 | 3.00e-19 | 84.3 |
Msa0905450 | AT4G17030.1 | 28.794 | 257 | 161 | 9 | 1 | 243 | 1 | 249 | 4.80e-19 | 83.6 |
Msa0905450 | AT3G45970.2 | 28.095 | 210 | 125 | 9 | 46 | 237 | 14 | 215 | 1.45e-14 | 71.2 |
Msa0905450 | AT3G60570.2 | 26.829 | 205 | 132 | 6 | 46 | 237 | 4 | 203 | 5.29e-14 | 69.3 |
Msa0905450 | AT3G45970.1 | 27.053 | 207 | 125 | 9 | 51 | 239 | 46 | 244 | 6.55e-12 | 64.3 |
Msa0905450 | AT4G38400.1 | 25.980 | 204 | 126 | 9 | 51 | 237 | 47 | 242 | 4.10e-11 | 62.0 |
Msa0905450 | AT3G45960.2 | 26.471 | 204 | 125 | 9 | 51 | 237 | 46 | 241 | 8.33e-11 | 60.8 |
Find 96 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTCATAGATGTTGAAATT+TGG | 0.200578 | 6_2:-3569331 | Msa0905450:three_prime_UTR |
TATATGCAAGATGCATTTAA+AGG | 0.216975 | 6_2:+3569678 | None:intergenic |
TCCATGGCTATAGTAGAAAT+TGG | 0.222290 | 6_2:-3571221 | Msa0905450:CDS |
CTAAACTAAGTCATAGTTAA+AGG | 0.241625 | 6_2:-3569642 | Msa0905450:three_prime_UTR |
GAGCCATGGAGACACCATTT+TGG | 0.252914 | 6_2:+3570518 | None:intergenic |
AATGCACATGCAACCTTCTA+TGG | 0.293252 | 6_2:-3571189 | Msa0905450:CDS |
CATCTAGGCTTTCTTGTTCT+AGG | 0.294548 | 6_2:-3571270 | Msa0905450:CDS |
GAAATTTGGCACAACTAAAA+TGG | 0.299207 | 6_2:-3569317 | Msa0905450:three_prime_UTR |
TCTAGTCCTTGAACCTTTGA+TGG | 0.309672 | 6_2:+3569883 | None:intergenic |
GTAGAAGAAGAGGTGGAATA+AGG | 0.318290 | 6_2:-3569985 | Msa0905450:CDS |
GCCCCACCCAGTTGGTCCTT+TGG | 0.320692 | 6_2:-3569740 | Msa0905450:CDS |
GGAATGGAGTTGGAATAAAT+AGG | 0.331817 | 6_2:+3571444 | None:intergenic |
GGCAAGCCATGTCAAGGAAT+TGG | 0.336529 | 6_2:-3569859 | Msa0905450:CDS |
AACTTGTATAGTCAAGGATA+TGG | 0.336716 | 6_2:-3570626 | Msa0905450:CDS |
CAAGGAATTGGGGACAAAAT+TGG | 0.338609 | 6_2:-3569847 | Msa0905450:CDS |
GCAAGCCATGTCAAGGAATT+GGG | 0.340806 | 6_2:-3569858 | Msa0905450:CDS |
TCAGGTGGTGCATGTGGATA+TGG | 0.358218 | 6_2:-3570650 | Msa0905450:intron |
TTGTTCCTGTTGTTTATAGA+AGG | 0.359748 | 6_2:-3570379 | Msa0905450:intron |
CCATGGCTATAGTAGAAATT+GGG | 0.360472 | 6_2:-3571220 | Msa0905450:CDS |
CCATCTCTAATTTCCGTTTG+AGG | 0.374300 | 6_2:+3569035 | None:intergenic |
AGCATCACTGCCACCATAGA+AGG | 0.378869 | 6_2:+3571176 | None:intergenic |
GAGAGATCAAAATGGTGATT+AGG | 0.389572 | 6_2:+3570443 | None:intergenic |
TATGGTGGCAGTGATGCTTC+TGG | 0.392725 | 6_2:-3571171 | Msa0905450:CDS |
CAGAGCAACTCTTATTTGAA+TGG | 0.396658 | 6_2:-3569824 | Msa0905450:CDS |
GGTTTGTCCAAAGGACCAAC+TGG | 0.413288 | 6_2:+3569733 | None:intergenic |
TAGTACTCAATAAGTGTTAG+TGG | 0.413325 | 6_2:-3569564 | Msa0905450:three_prime_UTR |
TGAGCAATGTGTTGGAAAAC+AGG | 0.417463 | 6_2:+3570416 | None:intergenic |
ATATGCAAGATGCATTTAAA+GGG | 0.425007 | 6_2:+3569679 | None:intergenic |
TTTGTAGTCACCACTGGTAA+TGG | 0.425157 | 6_2:-3569788 | Msa0905450:CDS |
TTAGTCCTTGTGACTAATGT+TGG | 0.430036 | 6_2:-3569932 | Msa0905450:CDS |
ATGTAGTATACTTTAATTCA+AGG | 0.432735 | 6_2:-3569286 | Msa0905450:three_prime_UTR |
AATTACCTTCTATAAACAAC+AGG | 0.442368 | 6_2:+3570374 | None:intergenic |
TCAAAGGTTCAAGGACTAGA+TGG | 0.459280 | 6_2:-3569880 | Msa0905450:CDS |
TTCAACAATGGTTTAAGTTG+TGG | 0.465134 | 6_2:-3570572 | Msa0905450:CDS |
TATTGTTATCTTGCCTCAAA+CGG | 0.468427 | 6_2:-3569048 | Msa0905450:three_prime_UTR |
GGAATAAGGTTCACAATCAA+TGG | 0.470548 | 6_2:-3569971 | Msa0905450:CDS |
GTGACTAATGTTGGAGGTGC+AGG | 0.476012 | 6_2:-3569923 | Msa0905450:CDS |
CTTTATATTGAGCAATGTGT+TGG | 0.478496 | 6_2:+3570408 | None:intergenic |
CTTTCATTTGTAGTCACCAC+TGG | 0.482315 | 6_2:-3569794 | Msa0905450:CDS |
CTGTAGCCATCAAAGGTTCA+AGG | 0.485843 | 6_2:-3569889 | Msa0905450:CDS |
TCCAAAGGACCAACTGGGTG+GGG | 0.487484 | 6_2:+3569739 | None:intergenic |
GAATGGAGTTGGAATAAATA+GGG | 0.488366 | 6_2:+3571445 | None:intergenic |
TCCTTGATCTCATATGTCCA+TGG | 0.488957 | 6_2:-3571237 | Msa0905450:CDS |
ATACTTAAACAATATTGTAA+AGG | 0.491642 | 6_2:+3569164 | None:intergenic |
GTCCTTGTGACTAATGTTGG+AGG | 0.495647 | 6_2:-3569929 | Msa0905450:CDS |
AATGTGCTAGTGACCCAAAA+TGG | 0.497071 | 6_2:-3570532 | Msa0905450:CDS |
TGAAGCATTGACACATATAC+AGG | 0.497087 | 6_2:+3569348 | None:intergenic |
CACATTGCTCAATATAAAGC+TGG | 0.505971 | 6_2:-3570404 | Msa0905450:CDS |
GCTATAGTAGAAATTGGGGT+TGG | 0.507885 | 6_2:-3571215 | Msa0905450:CDS |
AGGGTAAGGTGTAGAAGAAG+AGG | 0.509744 | 6_2:-3569995 | Msa0905450:CDS |
AGTGATGCTTCTGGCACAAT+GGG | 0.518333 | 6_2:-3571162 | Msa0905450:intron |
ACATTACACAAATGAAGCAT+TGG | 0.519266 | 6_2:+3569102 | None:intergenic |
CCCAATTTCTACTATAGCCA+TGG | 0.522120 | 6_2:+3571220 | None:intergenic |
GCCACTAATTTCTGTCCACC+TGG | 0.524649 | 6_2:-3570482 | Msa0905450:CDS |
TTTAACTGAGGATGATAAAG+GGG | 0.530915 | 6_2:-3569252 | Msa0905450:three_prime_UTR |
GCCATGGACATATGAGATCA+AGG | 0.531008 | 6_2:+3571236 | None:intergenic |
TTAATGTTGCCCCACCCAGT+TGG | 0.531923 | 6_2:-3569748 | Msa0905450:CDS |
AGATCAAAATGGTGATTAGG+AGG | 0.535090 | 6_2:+3570446 | None:intergenic |
CAGGTTGAGAGAGATCAAAA+TGG | 0.536275 | 6_2:+3570435 | None:intergenic |
ACTTGTATAGTCAAGGATAT+GGG | 0.538764 | 6_2:-3570625 | Msa0905450:CDS |
TGTAGTATACTTTAATTCAA+GGG | 0.539042 | 6_2:-3569285 | Msa0905450:three_prime_UTR |
TTTAAAGGGTTAGTTAGTAG+AGG | 0.540571 | 6_2:+3569693 | None:intergenic |
ATTTCTGTCCACCTGGTGGT+TGG | 0.547131 | 6_2:-3570475 | Msa0905450:CDS |
TCCTTTGGACAAACCTACAC+TGG | 0.547722 | 6_2:-3569725 | Msa0905450:CDS |
GAGGAACTGCCTTCCAGTGT+AGG | 0.551003 | 6_2:+3569712 | None:intergenic |
TTGTCCCCAATTCCTTGACA+TGG | 0.556187 | 6_2:+3569853 | None:intergenic |
GACCCAAAATGGTGTCTCCA+TGG | 0.557622 | 6_2:-3570521 | Msa0905450:CDS |
GTCCAAAGGACCAACTGGGT+GGG | 0.563335 | 6_2:+3569738 | None:intergenic |
GTAAGGTGTAGAAGAAGAGG+TGG | 0.567385 | 6_2:-3569992 | Msa0905450:CDS |
AAAATTTCAGGTGGTGCATG+TGG | 0.568241 | 6_2:-3570656 | Msa0905450:intron |
CAGTGATGCTTCTGGCACAA+TGG | 0.576572 | 6_2:-3571163 | Msa0905450:CDS |
TATGGAAACTTGTATAGTCA+AGG | 0.576631 | 6_2:-3570632 | Msa0905450:CDS |
TCCAGTGTAGGTTTGTCCAA+AGG | 0.584012 | 6_2:+3569724 | None:intergenic |
GTGCATTCTGTAGCCATCAA+AGG | 0.587053 | 6_2:-3569896 | Msa0905450:CDS |
ACCAGGTGGACAGAAATTAG+TGG | 0.590692 | 6_2:+3570481 | None:intergenic |
TTTGAGTAAATAGAAGTGAT+CGG | 0.592665 | 6_2:+3569416 | None:intergenic |
TATATATGTCGATGTCGCGA+TGG | 0.601763 | 6_2:+3569446 | None:intergenic |
CAGTAACAACAATGGAGCCA+TGG | 0.606178 | 6_2:+3570504 | None:intergenic |
GGAGGGTCACACCAACCACC+AGG | 0.606947 | 6_2:+3570464 | None:intergenic |
CACCTCCAACATTAGTCACA+AGG | 0.606977 | 6_2:+3569927 | None:intergenic |
AGCACTGCATTATTCAACAA+TGG | 0.608720 | 6_2:-3570584 | Msa0905450:CDS |
CTAGATGGCAAGCCATGTCA+AGG | 0.612177 | 6_2:-3569865 | Msa0905450:CDS |
TGTCCAAAGGACCAACTGGG+TGG | 0.615300 | 6_2:+3569737 | None:intergenic |
CATGGCTATAGTAGAAATTG+GGG | 0.616292 | 6_2:-3571219 | Msa0905450:CDS |
ACTAATTTCTGTCCACCTGG+TGG | 0.617803 | 6_2:-3570479 | Msa0905450:CDS |
CAAGCCATGTCAAGGAATTG+GGG | 0.622367 | 6_2:-3569857 | Msa0905450:CDS |
TTGGACAAACCTACACTGGA+AGG | 0.627049 | 6_2:-3569721 | Msa0905450:CDS |
ATGTATCTGACACGTGTCAG+TGG | 0.627713 | 6_2:-3569613 | Msa0905450:three_prime_UTR |
ATTAGTGGCAGTAACAACAA+TGG | 0.635904 | 6_2:+3570496 | None:intergenic |
GCACATGCAACCTTCTATGG+TGG | 0.645972 | 6_2:-3571186 | Msa0905450:CDS |
TGGAGTTGGAATAAATAGGG+AGG | 0.646851 | 6_2:+3571448 | None:intergenic |
TCTGACACGTGTCAGTGGAG+CGG | 0.661239 | 6_2:-3569608 | Msa0905450:three_prime_UTR |
GATCAAAATGGTGATTAGGA+GGG | 0.666299 | 6_2:+3570447 | None:intergenic |
GTTTGTCCAAAGGACCAACT+GGG | 0.667033 | 6_2:+3569734 | None:intergenic |
GGGTCACACCAACCACCAGG+TGG | 0.687412 | 6_2:+3570467 | None:intergenic |
AATACTATGACCATTACCAG+TGG | 0.725625 | 6_2:+3569778 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAAAAATATAAAAATTTC+AGG | - | chr6_2:3569845-3569864 | Msa0905450:CDS | 10.0% |
!! | AACAAAAATATAAAAATTTC+AGG | - | chr6_2:3569845-3569864 | Msa0905450:CDS | 10.0% |
!!! | TAGTTTTAAAATGTTGTTAA+TGG | - | chr6_2:3569421-3569440 | Msa0905450:three_prime_UTR | 15.0% |
!! | AAAAATATAAAAATTTCAGG+TGG | - | chr6_2:3569848-3569867 | Msa0905450:CDS | 15.0% |
!! | AACAGAAAATTACTAAAATT+GGG | + | chr6_2:3570222-3570241 | None:intergenic | 15.0% |
!! | AAACAGAAAATTACTAAAAT+TGG | + | chr6_2:3570223-3570242 | None:intergenic | 15.0% |
!!! | TTCATTCAATAATATTTTAG+AGG | - | chr6_2:3570330-3570349 | Msa0905450:intron | 15.0% |
!! | ATACTTAAACAATATTGTAA+AGG | + | chr6_2:3571352-3571371 | None:intergenic | 15.0% |
!!! | TAGTTTTAAAATGTTGTTAA+TGG | - | chr6_2:3569421-3569440 | Msa0905450:three_prime_UTR | 15.0% |
!! | AAAAATATAAAAATTTCAGG+TGG | - | chr6_2:3569848-3569867 | Msa0905450:CDS | 15.0% |
!! | AACAGAAAATTACTAAAATT+GGG | + | chr6_2:3570222-3570241 | None:intergenic | 15.0% |
!! | AAACAGAAAATTACTAAAAT+TGG | + | chr6_2:3570223-3570242 | None:intergenic | 15.0% |
!!! | TTCATTCAATAATATTTTAG+AGG | - | chr6_2:3570330-3570349 | Msa0905450:intron | 15.0% |
!! | ATACTTAAACAATATTGTAA+AGG | + | chr6_2:3571352-3571371 | None:intergenic | 15.0% |
!!! | GAGTTTTTGTATTTTTTTGA+GGG | + | chr6_2:3569093-3569112 | None:intergenic | 20.0% |
!!! | TGAGTTTTTGTATTTTTTTG+AGG | + | chr6_2:3569094-3569113 | None:intergenic | 20.0% |
!! | ATGTGAACATAAAGAAAAAA+AGG | + | chr6_2:3569163-3569182 | None:intergenic | 20.0% |
!! | CAATTACAAGTACAATATAA+AGG | + | chr6_2:3569523-3569542 | None:intergenic | 20.0% |
!! | ACAGAAAATTACTAAAATTG+GGG | + | chr6_2:3570221-3570240 | None:intergenic | 20.0% |
!!! | TTGTTTCAGTTTGTTATTTT+CGG | - | chr6_2:3570243-3570262 | Msa0905450:intron | 20.0% |
!! | ACAACTATTAAGCTTAAATA+GGG | + | chr6_2:3570290-3570309 | None:intergenic | 20.0% |
!! | TACAACTATTAAGCTTAAAT+AGG | + | chr6_2:3570291-3570310 | None:intergenic | 20.0% |
!!! | ATGAATAAAAGTTGTCTTTT+AGG | + | chr6_2:3570315-3570334 | None:intergenic | 20.0% |
!! | ATGTAGTATACTTTAATTCA+AGG | - | chr6_2:3571227-3571246 | Msa0905450:CDS | 20.0% |
!! | TGTAGTATACTTTAATTCAA+GGG | - | chr6_2:3571228-3571247 | Msa0905450:CDS | 20.0% |
!!! | GAGTTTTTGTATTTTTTTGA+GGG | + | chr6_2:3569093-3569112 | None:intergenic | 20.0% |
!!! | TGAGTTTTTGTATTTTTTTG+AGG | + | chr6_2:3569094-3569113 | None:intergenic | 20.0% |
!! | ATGTGAACATAAAGAAAAAA+AGG | + | chr6_2:3569163-3569182 | None:intergenic | 20.0% |
!! | CAATTACAAGTACAATATAA+AGG | + | chr6_2:3569523-3569542 | None:intergenic | 20.0% |
!! | ACAGAAAATTACTAAAATTG+GGG | + | chr6_2:3570221-3570240 | None:intergenic | 20.0% |
!!! | TTGTTTCAGTTTGTTATTTT+CGG | - | chr6_2:3570243-3570262 | Msa0905450:intron | 20.0% |
!! | ACAACTATTAAGCTTAAATA+GGG | + | chr6_2:3570290-3570309 | None:intergenic | 20.0% |
!! | TACAACTATTAAGCTTAAAT+AGG | + | chr6_2:3570291-3570310 | None:intergenic | 20.0% |
!!! | ATGAATAAAAGTTGTCTTTT+AGG | + | chr6_2:3570315-3570334 | None:intergenic | 20.0% |
!! | ATGTAGTATACTTTAATTCA+AGG | - | chr6_2:3571227-3571246 | Msa0905450:CDS | 20.0% |
!! | TGTAGTATACTTTAATTCAA+GGG | - | chr6_2:3571228-3571247 | Msa0905450:CDS | 20.0% |
!!! | TTTGTATTTTTTTGAGGGAA+TGG | + | chr6_2:3569088-3569107 | None:intergenic | 25.0% |
! | AGAAAAAAAGGAAGACATAA+GGG | + | chr6_2:3569151-3569170 | None:intergenic | 25.0% |
! | AAGAAAAAAAGGAAGACATA+AGG | + | chr6_2:3569152-3569171 | None:intergenic | 25.0% |
!! | GTACAATATAAAGGATTTTG+AGG | + | chr6_2:3569514-3569533 | None:intergenic | 25.0% |
! | AATTACCTTCTATAAACAAC+AGG | + | chr6_2:3570142-3570161 | None:intergenic | 25.0% |
! | AAGAAAAAAAGTTAGCATCA+TGG | + | chr6_2:3570475-3570494 | None:intergenic | 25.0% |
!!! | ATGCATGGTTTTATATTGAA+GGG | - | chr6_2:3570499-3570518 | Msa0905450:CDS | 25.0% |
! | ATATGCAAGATGCATTTAAA+GGG | + | chr6_2:3570837-3570856 | None:intergenic | 25.0% |
! | TATATGCAAGATGCATTTAA+AGG | + | chr6_2:3570838-3570857 | None:intergenic | 25.0% |
! | CTAAACTAAGTCATAGTTAA+AGG | - | chr6_2:3570871-3570890 | Msa0905450:intron | 25.0% |
! | TTTGAGTAAATAGAAGTGAT+CGG | + | chr6_2:3571100-3571119 | None:intergenic | 25.0% |
!!! | TTTTTAACTGAGGATGATAA+AGG | - | chr6_2:3571259-3571278 | Msa0905450:CDS | 25.0% |
!!! | TTTTAACTGAGGATGATAAA+GGG | - | chr6_2:3571260-3571279 | Msa0905450:CDS | 25.0% |
!!! | TTTGTATTTTTTTGAGGGAA+TGG | + | chr6_2:3569088-3569107 | None:intergenic | 25.0% |
! | AGAAAAAAAGGAAGACATAA+GGG | + | chr6_2:3569151-3569170 | None:intergenic | 25.0% |
! | AAGAAAAAAAGGAAGACATA+AGG | + | chr6_2:3569152-3569171 | None:intergenic | 25.0% |
!! | GTACAATATAAAGGATTTTG+AGG | + | chr6_2:3569514-3569533 | None:intergenic | 25.0% |
! | AATTACCTTCTATAAACAAC+AGG | + | chr6_2:3570142-3570161 | None:intergenic | 25.0% |
! | AAGAAAAAAAGTTAGCATCA+TGG | + | chr6_2:3570475-3570494 | None:intergenic | 25.0% |
!!! | ATGCATGGTTTTATATTGAA+GGG | - | chr6_2:3570499-3570518 | Msa0905450:CDS | 25.0% |
! | ATATGCAAGATGCATTTAAA+GGG | + | chr6_2:3570837-3570856 | None:intergenic | 25.0% |
! | TATATGCAAGATGCATTTAA+AGG | + | chr6_2:3570838-3570857 | None:intergenic | 25.0% |
! | CTAAACTAAGTCATAGTTAA+AGG | - | chr6_2:3570871-3570890 | Msa0905450:intron | 25.0% |
! | TTTGAGTAAATAGAAGTGAT+CGG | + | chr6_2:3571100-3571119 | None:intergenic | 25.0% |
!!! | TTTTTAACTGAGGATGATAA+AGG | - | chr6_2:3571259-3571278 | Msa0905450:CDS | 25.0% |
!!! | TTTTAACTGAGGATGATAAA+GGG | - | chr6_2:3571260-3571279 | Msa0905450:CDS | 25.0% |
GAATGGAGTTGGAATAAATA+GGG | + | chr6_2:3569071-3569090 | None:intergenic | 30.0% | |
! | TATGTTCTAGCTATACTTTG+TGG | - | chr6_2:3569610-3569629 | Msa0905450:three_prime_UTR | 30.0% |
TAGTTCGGCTATTAAAACAA+TGG | + | chr6_2:3569644-3569663 | None:intergenic | 30.0% | |
!!! | TTGTTTTGGCAATTCGATTA+GGG | + | chr6_2:3569734-3569753 | None:intergenic | 30.0% |
!!! | ATTGTTTTGGCAATTCGATT+AGG | + | chr6_2:3569735-3569754 | None:intergenic | 30.0% |
! | AGTTAATGACTCGATTGTTT+TGG | + | chr6_2:3569748-3569767 | None:intergenic | 30.0% |
AAACAATCGAGTCATTAACT+TGG | - | chr6_2:3569748-3569767 | Msa0905450:CDS | 30.0% | |
! | GCAAACACATTTGTTAGTTA+TGG | + | chr6_2:3569813-3569832 | None:intergenic | 30.0% |
TATGGAAACTTGTATAGTCA+AGG | - | chr6_2:3569881-3569900 | Msa0905450:CDS | 30.0% | |
AACTTGTATAGTCAAGGATA+TGG | - | chr6_2:3569887-3569906 | Msa0905450:CDS | 30.0% | |
ACTTGTATAGTCAAGGATAT+GGG | - | chr6_2:3569888-3569907 | Msa0905450:CDS | 30.0% | |
!! | TTCAACAATGGTTTAAGTTG+TGG | - | chr6_2:3569941-3569960 | Msa0905450:CDS | 30.0% |
CTTTATATTGAGCAATGTGT+TGG | + | chr6_2:3570108-3570127 | None:intergenic | 30.0% | |
! | TTGTTCCTGTTGTTTATAGA+AGG | - | chr6_2:3570134-3570153 | Msa0905450:intron | 30.0% |
!!! | TTTGTTATTTTCGGCTCATT+AGG | - | chr6_2:3570252-3570271 | Msa0905450:intron | 30.0% |
!!! | TTGTTATTTTCGGCTCATTA+GGG | - | chr6_2:3570253-3570272 | Msa0905450:intron | 30.0% |
!!! | CTTTTTTTCTTCTTCATGCA+TGG | - | chr6_2:3570484-3570503 | Msa0905450:CDS | 30.0% |
!!! | CATGCATGGTTTTATATTGA+AGG | - | chr6_2:3570498-3570517 | Msa0905450:CDS | 30.0% |
!!! | TGGTTTTATATTGAAGGGTA+AGG | - | chr6_2:3570504-3570523 | Msa0905450:CDS | 30.0% |
!! | TTTAAAGGGTTAGTTAGTAG+AGG | + | chr6_2:3570823-3570842 | None:intergenic | 30.0% |
TAGTACTCAATAAGTGTTAG+TGG | - | chr6_2:3570949-3570968 | Msa0905450:intron | 30.0% | |
! | GCACTTTTAATATGAAGTGT+TGG | + | chr6_2:3570987-3571006 | None:intergenic | 30.0% |
GCTTCATAGATGTTGAAATT+TGG | - | chr6_2:3571182-3571201 | Msa0905450:CDS | 30.0% | |
GAAATTTGGCACAACTAAAA+TGG | - | chr6_2:3571196-3571215 | Msa0905450:CDS | 30.0% | |
TTTAACTGAGGATGATAAAG+GGG | - | chr6_2:3571261-3571280 | Msa0905450:CDS | 30.0% | |
ACATTACACAAATGAAGCAT+TGG | + | chr6_2:3571414-3571433 | None:intergenic | 30.0% | |
TATTGTTATCTTGCCTCAAA+CGG | - | chr6_2:3571465-3571484 | Msa0905450:five_prime_UTR | 30.0% | |
GAATGGAGTTGGAATAAATA+GGG | + | chr6_2:3569071-3569090 | None:intergenic | 30.0% | |
! | TATGTTCTAGCTATACTTTG+TGG | - | chr6_2:3569610-3569629 | Msa0905450:three_prime_UTR | 30.0% |
TAGTTCGGCTATTAAAACAA+TGG | + | chr6_2:3569644-3569663 | None:intergenic | 30.0% | |
!!! | TTGTTTTGGCAATTCGATTA+GGG | + | chr6_2:3569734-3569753 | None:intergenic | 30.0% |
!!! | ATTGTTTTGGCAATTCGATT+AGG | + | chr6_2:3569735-3569754 | None:intergenic | 30.0% |
! | AGTTAATGACTCGATTGTTT+TGG | + | chr6_2:3569748-3569767 | None:intergenic | 30.0% |
AAACAATCGAGTCATTAACT+TGG | - | chr6_2:3569748-3569767 | Msa0905450:CDS | 30.0% | |
! | GCAAACACATTTGTTAGTTA+TGG | + | chr6_2:3569813-3569832 | None:intergenic | 30.0% |
TATGGAAACTTGTATAGTCA+AGG | - | chr6_2:3569881-3569900 | Msa0905450:CDS | 30.0% | |
AACTTGTATAGTCAAGGATA+TGG | - | chr6_2:3569887-3569906 | Msa0905450:CDS | 30.0% | |
ACTTGTATAGTCAAGGATAT+GGG | - | chr6_2:3569888-3569907 | Msa0905450:CDS | 30.0% | |
!! | TTCAACAATGGTTTAAGTTG+TGG | - | chr6_2:3569941-3569960 | Msa0905450:CDS | 30.0% |
CTTTATATTGAGCAATGTGT+TGG | + | chr6_2:3570108-3570127 | None:intergenic | 30.0% | |
! | TTGTTCCTGTTGTTTATAGA+AGG | - | chr6_2:3570134-3570153 | Msa0905450:intron | 30.0% |
!!! | TTTGTTATTTTCGGCTCATT+AGG | - | chr6_2:3570252-3570271 | Msa0905450:intron | 30.0% |
!!! | TTGTTATTTTCGGCTCATTA+GGG | - | chr6_2:3570253-3570272 | Msa0905450:intron | 30.0% |
!!! | CTTTTTTTCTTCTTCATGCA+TGG | - | chr6_2:3570484-3570503 | Msa0905450:CDS | 30.0% |
!!! | CATGCATGGTTTTATATTGA+AGG | - | chr6_2:3570498-3570517 | Msa0905450:CDS | 30.0% |
!!! | TGGTTTTATATTGAAGGGTA+AGG | - | chr6_2:3570504-3570523 | Msa0905450:CDS | 30.0% |
!! | TTTAAAGGGTTAGTTAGTAG+AGG | + | chr6_2:3570823-3570842 | None:intergenic | 30.0% |
TAGTACTCAATAAGTGTTAG+TGG | - | chr6_2:3570949-3570968 | Msa0905450:intron | 30.0% | |
! | GCACTTTTAATATGAAGTGT+TGG | + | chr6_2:3570987-3571006 | None:intergenic | 30.0% |
GCTTCATAGATGTTGAAATT+TGG | - | chr6_2:3571182-3571201 | Msa0905450:CDS | 30.0% | |
GAAATTTGGCACAACTAAAA+TGG | - | chr6_2:3571196-3571215 | Msa0905450:CDS | 30.0% | |
TTTAACTGAGGATGATAAAG+GGG | - | chr6_2:3571261-3571280 | Msa0905450:CDS | 30.0% | |
ACATTACACAAATGAAGCAT+TGG | + | chr6_2:3571414-3571433 | None:intergenic | 30.0% | |
TATTGTTATCTTGCCTCAAA+CGG | - | chr6_2:3571465-3571484 | Msa0905450:five_prime_UTR | 30.0% | |
GGAATGGAGTTGGAATAAAT+AGG | + | chr6_2:3569072-3569091 | None:intergenic | 35.0% | |
!!! | TTTTTTTGAGGGAATGGAGT+TGG | + | chr6_2:3569082-3569101 | None:intergenic | 35.0% |
CTTTCTTGTTGCATTTATGC+AGG | - | chr6_2:3569210-3569229 | Msa0905450:three_prime_UTR | 35.0% | |
TCCATGGCTATAGTAGAAAT+TGG | - | chr6_2:3569292-3569311 | Msa0905450:three_prime_UTR | 35.0% | |
CCATGGCTATAGTAGAAATT+GGG | - | chr6_2:3569293-3569312 | Msa0905450:three_prime_UTR | 35.0% | |
CATGGCTATAGTAGAAATTG+GGG | - | chr6_2:3569294-3569313 | Msa0905450:three_prime_UTR | 35.0% | |
! | TGCTGCAAACTTTTACATTG+CGG | - | chr6_2:3569447-3569466 | Msa0905450:three_prime_UTR | 35.0% |
AAAATTCTTAGCCATGCTCA+TGG | + | chr6_2:3569569-3569588 | None:intergenic | 35.0% | |
! | AGCATGGCTAAGAATTTTGT+TGG | - | chr6_2:3569571-3569590 | Msa0905450:three_prime_UTR | 35.0% |
! | ATTAACTTGGTTGAACTGTC+TGG | - | chr6_2:3569761-3569780 | Msa0905450:CDS | 35.0% |
AGCACTGCATTATTCAACAA+TGG | - | chr6_2:3569929-3569948 | Msa0905450:CDS | 35.0% | |
ATTAGTGGCAGTAACAACAA+TGG | + | chr6_2:3570020-3570039 | None:intergenic | 35.0% | |
GATCAAAATGGTGATTAGGA+GGG | + | chr6_2:3570069-3570088 | None:intergenic | 35.0% | |
AGATCAAAATGGTGATTAGG+AGG | + | chr6_2:3570070-3570089 | None:intergenic | 35.0% | |
GAGAGATCAAAATGGTGATT+AGG | + | chr6_2:3570073-3570092 | None:intergenic | 35.0% | |
CACATTGCTCAATATAAAGC+TGG | - | chr6_2:3570109-3570128 | Msa0905450:intron | 35.0% | |
CCTACATCAGTTAAGGATAA+AGG | + | chr6_2:3570191-3570210 | None:intergenic | 35.0% | |
CCTTTATCCTTAACTGATGT+AGG | - | chr6_2:3570188-3570207 | Msa0905450:intron | 35.0% | |
TTATCCTTAACTGATGTAGG+AGG | - | chr6_2:3570191-3570210 | Msa0905450:intron | 35.0% | |
TATCCTTAACTGATGTAGGA+GGG | - | chr6_2:3570192-3570211 | Msa0905450:intron | 35.0% | |
TAAATTGTTAATGACGCCGT+CGG | + | chr6_2:3570374-3570393 | None:intergenic | 35.0% | |
ACAATTTGTGCCTACTTGTT+TGG | - | chr6_2:3570449-3570468 | Msa0905450:CDS | 35.0% | |
GGAATAAGGTTCACAATCAA+TGG | - | chr6_2:3570542-3570561 | Msa0905450:CDS | 35.0% | |
TTAGTCCTTGTGACTAATGT+TGG | - | chr6_2:3570581-3570600 | Msa0905450:CDS | 35.0% | |
! | CAGAGCAACTCTTATTTGAA+TGG | - | chr6_2:3570689-3570708 | Msa0905450:intron | 35.0% |
AATACTATGACCATTACCAG+TGG | + | chr6_2:3570738-3570757 | None:intergenic | 35.0% | |
!! | TGAAGCATTGACACATATAC+AGG | + | chr6_2:3571168-3571187 | None:intergenic | 35.0% |
GGAATGGAGTTGGAATAAAT+AGG | + | chr6_2:3569072-3569091 | None:intergenic | 35.0% | |
!!! | TTTTTTTGAGGGAATGGAGT+TGG | + | chr6_2:3569082-3569101 | None:intergenic | 35.0% |
CTTTCTTGTTGCATTTATGC+AGG | - | chr6_2:3569210-3569229 | Msa0905450:three_prime_UTR | 35.0% | |
TCCATGGCTATAGTAGAAAT+TGG | - | chr6_2:3569292-3569311 | Msa0905450:three_prime_UTR | 35.0% | |
CCATGGCTATAGTAGAAATT+GGG | - | chr6_2:3569293-3569312 | Msa0905450:three_prime_UTR | 35.0% | |
CATGGCTATAGTAGAAATTG+GGG | - | chr6_2:3569294-3569313 | Msa0905450:three_prime_UTR | 35.0% | |
! | TGCTGCAAACTTTTACATTG+CGG | - | chr6_2:3569447-3569466 | Msa0905450:three_prime_UTR | 35.0% |
AAAATTCTTAGCCATGCTCA+TGG | + | chr6_2:3569569-3569588 | None:intergenic | 35.0% | |
! | AGCATGGCTAAGAATTTTGT+TGG | - | chr6_2:3569571-3569590 | Msa0905450:three_prime_UTR | 35.0% |
! | ATTAACTTGGTTGAACTGTC+TGG | - | chr6_2:3569761-3569780 | Msa0905450:CDS | 35.0% |
AGCACTGCATTATTCAACAA+TGG | - | chr6_2:3569929-3569948 | Msa0905450:CDS | 35.0% | |
ATTAGTGGCAGTAACAACAA+TGG | + | chr6_2:3570020-3570039 | None:intergenic | 35.0% | |
GATCAAAATGGTGATTAGGA+GGG | + | chr6_2:3570069-3570088 | None:intergenic | 35.0% | |
AGATCAAAATGGTGATTAGG+AGG | + | chr6_2:3570070-3570089 | None:intergenic | 35.0% | |
GAGAGATCAAAATGGTGATT+AGG | + | chr6_2:3570073-3570092 | None:intergenic | 35.0% | |
CACATTGCTCAATATAAAGC+TGG | - | chr6_2:3570109-3570128 | Msa0905450:intron | 35.0% | |
CCTACATCAGTTAAGGATAA+AGG | + | chr6_2:3570191-3570210 | None:intergenic | 35.0% | |
CCTTTATCCTTAACTGATGT+AGG | - | chr6_2:3570188-3570207 | Msa0905450:intron | 35.0% | |
TTATCCTTAACTGATGTAGG+AGG | - | chr6_2:3570191-3570210 | Msa0905450:intron | 35.0% | |
TATCCTTAACTGATGTAGGA+GGG | - | chr6_2:3570192-3570211 | Msa0905450:intron | 35.0% | |
TAAATTGTTAATGACGCCGT+CGG | + | chr6_2:3570374-3570393 | None:intergenic | 35.0% | |
ACAATTTGTGCCTACTTGTT+TGG | - | chr6_2:3570449-3570468 | Msa0905450:CDS | 35.0% | |
GGAATAAGGTTCACAATCAA+TGG | - | chr6_2:3570542-3570561 | Msa0905450:CDS | 35.0% | |
TTAGTCCTTGTGACTAATGT+TGG | - | chr6_2:3570581-3570600 | Msa0905450:CDS | 35.0% | |
! | CAGAGCAACTCTTATTTGAA+TGG | - | chr6_2:3570689-3570708 | Msa0905450:intron | 35.0% |
AATACTATGACCATTACCAG+TGG | + | chr6_2:3570738-3570757 | None:intergenic | 35.0% | |
!! | TGAAGCATTGACACATATAC+AGG | + | chr6_2:3571168-3571187 | None:intergenic | 35.0% |
TGGAGTTGGAATAAATAGGG+AGG | + | chr6_2:3569068-3569087 | None:intergenic | 40.0% | |
GCAGGAAAAATGTCTCATCT+AGG | - | chr6_2:3569228-3569247 | Msa0905450:three_prime_UTR | 40.0% | |
CATCTAGGCTTTCTTGTTCT+AGG | - | chr6_2:3569243-3569262 | Msa0905450:three_prime_UTR | 40.0% | |
TCCTTGATCTCATATGTCCA+TGG | - | chr6_2:3569276-3569295 | Msa0905450:three_prime_UTR | 40.0% | |
CCCAATTTCTACTATAGCCA+TGG | + | chr6_2:3569296-3569315 | None:intergenic | 40.0% | |
GCTATAGTAGAAATTGGGGT+TGG | - | chr6_2:3569298-3569317 | Msa0905450:three_prime_UTR | 40.0% | |
AATGCACATGCAACCTTCTA+TGG | - | chr6_2:3569324-3569343 | Msa0905450:three_prime_UTR | 40.0% | |
GCAATATGAAACCATGAGCA+TGG | - | chr6_2:3569555-3569574 | Msa0905450:three_prime_UTR | 40.0% | |
CCATGAATAAGAAGTCTCAC+CGG | + | chr6_2:3569676-3569695 | None:intergenic | 40.0% | |
GTTACAGTTCGAGCGATTTA+AGG | + | chr6_2:3569707-3569726 | None:intergenic | 40.0% | |
! | AAAATTTCAGGTGGTGCATG+TGG | - | chr6_2:3569857-3569876 | Msa0905450:CDS | 40.0% |
AATGTGCTAGTGACCCAAAA+TGG | - | chr6_2:3569981-3570000 | Msa0905450:CDS | 40.0% | |
! | CAGGTTGAGAGAGATCAAAA+TGG | + | chr6_2:3570081-3570100 | None:intergenic | 40.0% |
TGAGCAATGTGTTGGAAAAC+AGG | + | chr6_2:3570100-3570119 | None:intergenic | 40.0% | |
AAACCCTCCTACATCAGTTA+AGG | + | chr6_2:3570198-3570217 | None:intergenic | 40.0% | |
GTAGAAGAAGAGGTGGAATA+AGG | - | chr6_2:3570528-3570547 | Msa0905450:CDS | 40.0% | |
TCTAGTCCTTGAACCTTTGA+TGG | + | chr6_2:3570633-3570652 | None:intergenic | 40.0% | |
TCAAAGGTTCAAGGACTAGA+TGG | - | chr6_2:3570633-3570652 | Msa0905450:CDS | 40.0% | |
CAAGGAATTGGGGACAAAAT+TGG | - | chr6_2:3570666-3570685 | Msa0905450:intron | 40.0% | |
CTTTCATTTGTAGTCACCAC+TGG | - | chr6_2:3570719-3570738 | Msa0905450:intron | 40.0% | |
TTTGTAGTCACCACTGGTAA+TGG | - | chr6_2:3570725-3570744 | Msa0905450:intron | 40.0% | |
TATATATGTCGATGTCGCGA+TGG | + | chr6_2:3571070-3571089 | None:intergenic | 40.0% | |
!!! | GGCGCTTTAGTTTTTAACTG+AGG | - | chr6_2:3571249-3571268 | Msa0905450:CDS | 40.0% |
TGGAGTTGGAATAAATAGGG+AGG | + | chr6_2:3569068-3569087 | None:intergenic | 40.0% | |
GCAGGAAAAATGTCTCATCT+AGG | - | chr6_2:3569228-3569247 | Msa0905450:three_prime_UTR | 40.0% | |
CATCTAGGCTTTCTTGTTCT+AGG | - | chr6_2:3569243-3569262 | Msa0905450:three_prime_UTR | 40.0% | |
TCCTTGATCTCATATGTCCA+TGG | - | chr6_2:3569276-3569295 | Msa0905450:three_prime_UTR | 40.0% | |
CCCAATTTCTACTATAGCCA+TGG | + | chr6_2:3569296-3569315 | None:intergenic | 40.0% | |
GCTATAGTAGAAATTGGGGT+TGG | - | chr6_2:3569298-3569317 | Msa0905450:three_prime_UTR | 40.0% | |
AATGCACATGCAACCTTCTA+TGG | - | chr6_2:3569324-3569343 | Msa0905450:three_prime_UTR | 40.0% | |
GCAATATGAAACCATGAGCA+TGG | - | chr6_2:3569555-3569574 | Msa0905450:three_prime_UTR | 40.0% | |
CCATGAATAAGAAGTCTCAC+CGG | + | chr6_2:3569676-3569695 | None:intergenic | 40.0% | |
GTTACAGTTCGAGCGATTTA+AGG | + | chr6_2:3569707-3569726 | None:intergenic | 40.0% | |
! | AAAATTTCAGGTGGTGCATG+TGG | - | chr6_2:3569857-3569876 | Msa0905450:CDS | 40.0% |
AATGTGCTAGTGACCCAAAA+TGG | - | chr6_2:3569981-3570000 | Msa0905450:CDS | 40.0% | |
! | CAGGTTGAGAGAGATCAAAA+TGG | + | chr6_2:3570081-3570100 | None:intergenic | 40.0% |
TGAGCAATGTGTTGGAAAAC+AGG | + | chr6_2:3570100-3570119 | None:intergenic | 40.0% | |
AAACCCTCCTACATCAGTTA+AGG | + | chr6_2:3570198-3570217 | None:intergenic | 40.0% | |
GTAGAAGAAGAGGTGGAATA+AGG | - | chr6_2:3570528-3570547 | Msa0905450:CDS | 40.0% | |
TCTAGTCCTTGAACCTTTGA+TGG | + | chr6_2:3570633-3570652 | None:intergenic | 40.0% | |
TCAAAGGTTCAAGGACTAGA+TGG | - | chr6_2:3570633-3570652 | Msa0905450:CDS | 40.0% | |
CAAGGAATTGGGGACAAAAT+TGG | - | chr6_2:3570666-3570685 | Msa0905450:intron | 40.0% | |
CTTTCATTTGTAGTCACCAC+TGG | - | chr6_2:3570719-3570738 | Msa0905450:intron | 40.0% | |
TTTGTAGTCACCACTGGTAA+TGG | - | chr6_2:3570725-3570744 | Msa0905450:intron | 40.0% | |
TATATATGTCGATGTCGCGA+TGG | + | chr6_2:3571070-3571089 | None:intergenic | 40.0% | |
!!! | GGCGCTTTAGTTTTTAACTG+AGG | - | chr6_2:3571249-3571268 | Msa0905450:CDS | 40.0% |
GCCATGGACATATGAGATCA+AGG | + | chr6_2:3569280-3569299 | None:intergenic | 45.0% | |
AGTGATGCTTCTGGCACAAT+GGG | - | chr6_2:3569351-3569370 | Msa0905450:three_prime_UTR | 45.0% | |
AGCCGAACTAGAAATCGAAC+CGG | - | chr6_2:3569654-3569673 | Msa0905450:three_prime_UTR | 45.0% | |
!! | CACCGGTTCGATTTCTAGTT+CGG | + | chr6_2:3569659-3569678 | None:intergenic | 45.0% |
CCGGTGAGACTTCTTATTCA+TGG | - | chr6_2:3569673-3569692 | Msa0905450:three_prime_UTR | 45.0% | |
! | TTGAACTGTCTGGTTCGCTT+CGG | - | chr6_2:3569771-3569790 | Msa0905450:CDS | 45.0% |
! | AGCCATGGAGACACCATTTT+GGG | + | chr6_2:3569997-3570016 | None:intergenic | 45.0% |
CAGTAACAACAATGGAGCCA+TGG | + | chr6_2:3570012-3570031 | None:intergenic | 45.0% | |
ACCAGGTGGACAGAAATTAG+TGG | + | chr6_2:3570035-3570054 | None:intergenic | 45.0% | |
ACTAATTTCTGTCCACCTGG+TGG | - | chr6_2:3570034-3570053 | Msa0905450:intron | 45.0% | |
AGCATCATGGCCAAACAAGT+AGG | + | chr6_2:3570462-3570481 | None:intergenic | 45.0% | |
AGGGTAAGGTGTAGAAGAAG+AGG | - | chr6_2:3570518-3570537 | Msa0905450:CDS | 45.0% | |
GTAAGGTGTAGAAGAAGAGG+TGG | - | chr6_2:3570521-3570540 | Msa0905450:CDS | 45.0% | |
GTCCTTGTGACTAATGTTGG+AGG | - | chr6_2:3570584-3570603 | Msa0905450:CDS | 45.0% | |
CACCTCCAACATTAGTCACA+AGG | + | chr6_2:3570589-3570608 | None:intergenic | 45.0% | |
GTGCATTCTGTAGCCATCAA+AGG | - | chr6_2:3570617-3570636 | Msa0905450:CDS | 45.0% | |
CTGTAGCCATCAAAGGTTCA+AGG | - | chr6_2:3570624-3570643 | Msa0905450:CDS | 45.0% | |
GCAAGCCATGTCAAGGAATT+GGG | - | chr6_2:3570655-3570674 | Msa0905450:intron | 45.0% | |
CAAGCCATGTCAAGGAATTG+GGG | - | chr6_2:3570656-3570675 | Msa0905450:intron | 45.0% | |
TTGTCCCCAATTCCTTGACA+TGG | + | chr6_2:3570663-3570682 | None:intergenic | 45.0% | |
GTTTGTCCAAAGGACCAACT+GGG | + | chr6_2:3570782-3570801 | None:intergenic | 45.0% | |
TCCTTTGGACAAACCTACAC+TGG | - | chr6_2:3570788-3570807 | Msa0905450:intron | 45.0% | |
TCCAGTGTAGGTTTGTCCAA+AGG | + | chr6_2:3570792-3570811 | None:intergenic | 45.0% | |
TTGGACAAACCTACACTGGA+AGG | - | chr6_2:3570792-3570811 | Msa0905450:intron | 45.0% | |
ATGTATCTGACACGTGTCAG+TGG | - | chr6_2:3570900-3570919 | Msa0905450:intron | 45.0% | |
GCCATGGACATATGAGATCA+AGG | + | chr6_2:3569280-3569299 | None:intergenic | 45.0% | |
AGTGATGCTTCTGGCACAAT+GGG | - | chr6_2:3569351-3569370 | Msa0905450:three_prime_UTR | 45.0% | |
AGCCGAACTAGAAATCGAAC+CGG | - | chr6_2:3569654-3569673 | Msa0905450:three_prime_UTR | 45.0% | |
!! | CACCGGTTCGATTTCTAGTT+CGG | + | chr6_2:3569659-3569678 | None:intergenic | 45.0% |
CCGGTGAGACTTCTTATTCA+TGG | - | chr6_2:3569673-3569692 | Msa0905450:three_prime_UTR | 45.0% | |
! | TTGAACTGTCTGGTTCGCTT+CGG | - | chr6_2:3569771-3569790 | Msa0905450:CDS | 45.0% |
! | AGCCATGGAGACACCATTTT+GGG | + | chr6_2:3569997-3570016 | None:intergenic | 45.0% |
CAGTAACAACAATGGAGCCA+TGG | + | chr6_2:3570012-3570031 | None:intergenic | 45.0% | |
ACCAGGTGGACAGAAATTAG+TGG | + | chr6_2:3570035-3570054 | None:intergenic | 45.0% | |
ACTAATTTCTGTCCACCTGG+TGG | - | chr6_2:3570034-3570053 | Msa0905450:intron | 45.0% | |
AGCATCATGGCCAAACAAGT+AGG | + | chr6_2:3570462-3570481 | None:intergenic | 45.0% | |
AGGGTAAGGTGTAGAAGAAG+AGG | - | chr6_2:3570518-3570537 | Msa0905450:CDS | 45.0% | |
GTAAGGTGTAGAAGAAGAGG+TGG | - | chr6_2:3570521-3570540 | Msa0905450:CDS | 45.0% | |
GTCCTTGTGACTAATGTTGG+AGG | - | chr6_2:3570584-3570603 | Msa0905450:CDS | 45.0% | |
CACCTCCAACATTAGTCACA+AGG | + | chr6_2:3570589-3570608 | None:intergenic | 45.0% | |
GTGCATTCTGTAGCCATCAA+AGG | - | chr6_2:3570617-3570636 | Msa0905450:CDS | 45.0% | |
CTGTAGCCATCAAAGGTTCA+AGG | - | chr6_2:3570624-3570643 | Msa0905450:CDS | 45.0% | |
GCAAGCCATGTCAAGGAATT+GGG | - | chr6_2:3570655-3570674 | Msa0905450:intron | 45.0% | |
CAAGCCATGTCAAGGAATTG+GGG | - | chr6_2:3570656-3570675 | Msa0905450:intron | 45.0% | |
TTGTCCCCAATTCCTTGACA+TGG | + | chr6_2:3570663-3570682 | None:intergenic | 45.0% | |
GTTTGTCCAAAGGACCAACT+GGG | + | chr6_2:3570782-3570801 | None:intergenic | 45.0% | |
TCCTTTGGACAAACCTACAC+TGG | - | chr6_2:3570788-3570807 | Msa0905450:intron | 45.0% | |
TCCAGTGTAGGTTTGTCCAA+AGG | + | chr6_2:3570792-3570811 | None:intergenic | 45.0% | |
TTGGACAAACCTACACTGGA+AGG | - | chr6_2:3570792-3570811 | Msa0905450:intron | 45.0% | |
ATGTATCTGACACGTGTCAG+TGG | - | chr6_2:3570900-3570919 | Msa0905450:intron | 45.0% | |
GCACATGCAACCTTCTATGG+TGG | - | chr6_2:3569327-3569346 | Msa0905450:three_prime_UTR | 50.0% | |
AGCATCACTGCCACCATAGA+AGG | + | chr6_2:3569340-3569359 | None:intergenic | 50.0% | |
TATGGTGGCAGTGATGCTTC+TGG | - | chr6_2:3569342-3569361 | Msa0905450:three_prime_UTR | 50.0% | |
CAGTGATGCTTCTGGCACAA+TGG | - | chr6_2:3569350-3569369 | Msa0905450:three_prime_UTR | 50.0% | |
TCAGGTGGTGCATGTGGATA+TGG | - | chr6_2:3569863-3569882 | Msa0905450:CDS | 50.0% | |
GACCCAAAATGGTGTCTCCA+TGG | - | chr6_2:3569992-3570011 | Msa0905450:CDS | 50.0% | |
! | GAGCCATGGAGACACCATTT+TGG | + | chr6_2:3569998-3570017 | None:intergenic | 50.0% |
GCCACTAATTTCTGTCCACC+TGG | - | chr6_2:3570031-3570050 | Msa0905450:intron | 50.0% | |
ATTTCTGTCCACCTGGTGGT+TGG | - | chr6_2:3570038-3570057 | Msa0905450:intron | 50.0% | |
GTCGGAAGTTCTTCAGAGGT+GGG | + | chr6_2:3570356-3570375 | None:intergenic | 50.0% | |
! | CACCTCTGAAGAACTTCCGA+CGG | - | chr6_2:3570355-3570374 | Msa0905450:intron | 50.0% |
! | GTGACTAATGTTGGAGGTGC+AGG | - | chr6_2:3570590-3570609 | Msa0905450:CDS | 50.0% |
CTAGATGGCAAGCCATGTCA+AGG | - | chr6_2:3570648-3570667 | Msa0905450:CDS | 50.0% | |
GGCAAGCCATGTCAAGGAAT+TGG | - | chr6_2:3570654-3570673 | Msa0905450:intron | 50.0% | |
TTAATGTTGCCCCACCCAGT+TGG | - | chr6_2:3570765-3570784 | Msa0905450:intron | 50.0% | |
GGTTTGTCCAAAGGACCAAC+TGG | + | chr6_2:3570783-3570802 | None:intergenic | 50.0% | |
GCACATGCAACCTTCTATGG+TGG | - | chr6_2:3569327-3569346 | Msa0905450:three_prime_UTR | 50.0% | |
AGCATCACTGCCACCATAGA+AGG | + | chr6_2:3569340-3569359 | None:intergenic | 50.0% | |
TATGGTGGCAGTGATGCTTC+TGG | - | chr6_2:3569342-3569361 | Msa0905450:three_prime_UTR | 50.0% | |
CAGTGATGCTTCTGGCACAA+TGG | - | chr6_2:3569350-3569369 | Msa0905450:three_prime_UTR | 50.0% | |
TCAGGTGGTGCATGTGGATA+TGG | - | chr6_2:3569863-3569882 | Msa0905450:CDS | 50.0% | |
GACCCAAAATGGTGTCTCCA+TGG | - | chr6_2:3569992-3570011 | Msa0905450:CDS | 50.0% | |
! | GAGCCATGGAGACACCATTT+TGG | + | chr6_2:3569998-3570017 | None:intergenic | 50.0% |
GCCACTAATTTCTGTCCACC+TGG | - | chr6_2:3570031-3570050 | Msa0905450:intron | 50.0% | |
ATTTCTGTCCACCTGGTGGT+TGG | - | chr6_2:3570038-3570057 | Msa0905450:intron | 50.0% | |
GTCGGAAGTTCTTCAGAGGT+GGG | + | chr6_2:3570356-3570375 | None:intergenic | 50.0% | |
! | CACCTCTGAAGAACTTCCGA+CGG | - | chr6_2:3570355-3570374 | Msa0905450:intron | 50.0% |
! | GTGACTAATGTTGGAGGTGC+AGG | - | chr6_2:3570590-3570609 | Msa0905450:CDS | 50.0% |
CTAGATGGCAAGCCATGTCA+AGG | - | chr6_2:3570648-3570667 | Msa0905450:CDS | 50.0% | |
GGCAAGCCATGTCAAGGAAT+TGG | - | chr6_2:3570654-3570673 | Msa0905450:intron | 50.0% | |
TTAATGTTGCCCCACCCAGT+TGG | - | chr6_2:3570765-3570784 | Msa0905450:intron | 50.0% | |
GGTTTGTCCAAAGGACCAAC+TGG | + | chr6_2:3570783-3570802 | None:intergenic | 50.0% | |
CGTCGGAAGTTCTTCAGAGG+TGG | + | chr6_2:3570357-3570376 | None:intergenic | 55.0% | |
TCCAAAGGACCAACTGGGTG+GGG | + | chr6_2:3570777-3570796 | None:intergenic | 55.0% | |
GTCCAAAGGACCAACTGGGT+GGG | + | chr6_2:3570778-3570797 | None:intergenic | 55.0% | |
TGTCCAAAGGACCAACTGGG+TGG | + | chr6_2:3570779-3570798 | None:intergenic | 55.0% | |
GAGGAACTGCCTTCCAGTGT+AGG | + | chr6_2:3570804-3570823 | None:intergenic | 55.0% | |
TCTGACACGTGTCAGTGGAG+CGG | - | chr6_2:3570905-3570924 | Msa0905450:intron | 55.0% | |
CGTCGGAAGTTCTTCAGAGG+TGG | + | chr6_2:3570357-3570376 | None:intergenic | 55.0% | |
TCCAAAGGACCAACTGGGTG+GGG | + | chr6_2:3570777-3570796 | None:intergenic | 55.0% | |
GTCCAAAGGACCAACTGGGT+GGG | + | chr6_2:3570778-3570797 | None:intergenic | 55.0% | |
TGTCCAAAGGACCAACTGGG+TGG | + | chr6_2:3570779-3570798 | None:intergenic | 55.0% | |
GAGGAACTGCCTTCCAGTGT+AGG | + | chr6_2:3570804-3570823 | None:intergenic | 55.0% | |
TCTGACACGTGTCAGTGGAG+CGG | - | chr6_2:3570905-3570924 | Msa0905450:intron | 55.0% | |
CGCCGTCGGAAGTTCTTCAG+AGG | + | chr6_2:3570360-3570379 | None:intergenic | 60.0% | |
CGCCGTCGGAAGTTCTTCAG+AGG | + | chr6_2:3570360-3570379 | None:intergenic | 60.0% | |
GGGTCACACCAACCACCAGG+TGG | + | chr6_2:3570049-3570068 | None:intergenic | 65.0% | |
GGAGGGTCACACCAACCACC+AGG | + | chr6_2:3570052-3570071 | None:intergenic | 65.0% | |
GCCCCACCCAGTTGGTCCTT+TGG | - | chr6_2:3570773-3570792 | Msa0905450:intron | 65.0% | |
GGGTCACACCAACCACCAGG+TGG | + | chr6_2:3570049-3570068 | None:intergenic | 65.0% | |
GGAGGGTCACACCAACCACC+AGG | + | chr6_2:3570052-3570071 | None:intergenic | 65.0% | |
GCCCCACCCAGTTGGTCCTT+TGG | - | chr6_2:3570773-3570792 | Msa0905450:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 3569046 | 3571489 | 3569046 | ID=Msa0905450;Name=Msa0905450 |
chr6_2 | mRNA | 3569046 | 3571489 | 3569046 | ID=Msa0905450-mRNA-1;Parent=Msa0905450;Name=Msa0905450-mRNA-1;_AED=0.23;_eAED=0.23;_QI=92|1|1|1|0.66|0.75|4|660|244 |
chr6_2 | exon | 3569046 | 3570015 | 3569046 | ID=Msa0905450-mRNA-1:exon:1072;Parent=Msa0905450-mRNA-1 |
chr6_2 | exon | 3570380 | 3570668 | 3570380 | ID=Msa0905450-mRNA-1:exon:1071;Parent=Msa0905450-mRNA-1 |
chr6_2 | exon | 3571163 | 3571303 | 3571163 | ID=Msa0905450-mRNA-1:exon:1070;Parent=Msa0905450-mRNA-1 |
chr6_2 | exon | 3571403 | 3571489 | 3571403 | ID=Msa0905450-mRNA-1:exon:1069;Parent=Msa0905450-mRNA-1 |
chr6_2 | five_prime_UTR | 3571403 | 3571489 | 3571403 | ID=Msa0905450-mRNA-1:five_prime_utr;Parent=Msa0905450-mRNA-1 |
chr6_2 | five_prime_UTR | 3571299 | 3571303 | 3571299 | ID=Msa0905450-mRNA-1:five_prime_utr;Parent=Msa0905450-mRNA-1 |
chr6_2 | CDS | 3571163 | 3571298 | 3571163 | ID=Msa0905450-mRNA-1:cds;Parent=Msa0905450-mRNA-1 |
chr6_2 | CDS | 3570380 | 3570668 | 3570380 | ID=Msa0905450-mRNA-1:cds;Parent=Msa0905450-mRNA-1 |
chr6_2 | CDS | 3569706 | 3570015 | 3569706 | ID=Msa0905450-mRNA-1:cds;Parent=Msa0905450-mRNA-1 |
chr6_2 | three_prime_UTR | 3569046 | 3569705 | 3569046 | ID=Msa0905450-mRNA-1:three_prime_utr;Parent=Msa0905450-mRNA-1 |
Gene Sequence |
Protein sequence |