AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0905450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905450 MtrunA17_Chr6g0453341 99.590 244 1 0 1 244 11 254 0.0 498
Msa0905450 MtrunA17_Chr7g0217661 86.066 244 32 1 1 244 1 242 2.14e-155 431
Msa0905450 MtrunA17_Chr5g0417701 74.800 250 52 3 1 242 1 247 1.84e-134 378
Msa0905450 MtrunA17_Chr4g0042521 74.597 248 55 1 4 243 1 248 1.40e-133 376
Msa0905450 MtrunA17_Chr3g0128801 79.464 224 38 1 27 242 30 253 6.00e-131 370
Msa0905450 MtrunA17_Chr3g0092071 76.856 229 45 1 22 242 19 247 3.09e-130 367
Msa0905450 MtrunA17_Chr3g0128791 79.018 224 39 1 27 242 30 253 8.68e-130 367
Msa0905450 MtrunA17_Chr5g0432611 69.512 246 64 3 8 242 6 251 2.92e-126 358
Msa0905450 MtrunA17_Chr3g0107311 68.504 254 68 3 1 242 1 254 2.48e-124 353
Msa0905450 MtrunA17_Chr3g0107291 69.388 245 66 2 7 242 16 260 9.02e-123 349
Msa0905450 MtrunA17_Chr7g0238681 69.333 225 59 2 28 242 32 256 1.16e-113 326
Msa0905450 MtrunA17_Chr5g0435311 64.257 249 78 3 4 242 59 306 4.08e-113 327
Msa0905450 MtrunA17_Chr4g0031621 62.698 252 84 2 1 242 5 256 1.43e-110 318
Msa0905450 MtrunA17_Chr2g0328261 61.265 253 87 3 1 242 6 258 1.42e-109 316
Msa0905450 MtrunA17_Chr1g0193631 64.889 225 67 4 28 240 30 254 1.04e-105 306
Msa0905450 MtrunA17_Chr7g0271001 59.036 249 89 5 1 237 1 248 7.46e-102 296
Msa0905450 MtrunA17_Chr1g0157061 59.908 217 76 3 35 240 22 238 5.57e-95 278
Msa0905450 MtrunA17_Chr7g0218741 53.469 245 103 4 8 241 7 251 1.36e-89 265
Msa0905450 MtrunA17_Chr7g0218751 58.824 221 83 2 28 240 28 248 1.47e-88 262
Msa0905450 MtrunA17_Chr8g0360041 54.251 247 101 4 1 239 8 250 6.91e-88 261
Msa0905450 MtrunA17_Chr4g0069711 54.464 224 89 4 28 240 61 282 1.40e-86 258
Msa0905450 MtrunA17_Chr5g0433841 53.097 226 97 2 28 244 41 266 9.25e-85 253
Msa0905450 MtrunA17_Chr4g0021561 47.451 255 120 4 1 242 3 256 2.17e-83 249
Msa0905450 MtrunA17_Chr7g0218761 58.911 202 75 2 47 240 8 209 4.20e-82 244
Msa0905450 MtrunA17_Chr5g0398271 54.464 224 90 4 28 240 37 259 1.62e-80 242
Msa0905450 MtrunA17_Chr4g0057091 50.813 246 108 4 6 238 11 256 1.13e-79 240
Msa0905450 MtrunA17_Chr8g0360721 57.789 199 76 2 47 237 17 215 1.92e-78 235
Msa0905450 MtrunA17_Chr3g0109801 50.000 232 99 5 28 242 53 284 3.41e-74 227
Msa0905450 MtrunA17_Chr4g0022851 54.839 124 46 4 1 114 1 124 6.83e-38 129
Msa0905450 MtrunA17_Chr4g0022841 50.862 116 57 0 124 239 1 116 2.32e-37 127
Msa0905450 MtrunA17_Chr2g0324191 44.898 147 69 4 6 142 8 152 8.14e-36 124
Msa0905450 MtrunA17_Chr2g0324181 53.465 101 47 0 142 242 17 117 3.38e-33 116
Msa0905450 MtrunA17_Chr2g0324221 33.778 225 133 7 28 240 35 255 5.10e-29 110
Msa0905450 MtrunA17_Chr2g0324201 32.540 252 154 8 1 240 6 253 9.58e-28 106
Msa0905450 MtrunA17_Chr4g0021641 32.751 229 138 8 28 244 41 265 9.28e-27 104
Msa0905450 MtrunA17_Chr8g0359981 62.500 80 23 4 70 142 2 81 2.66e-26 99.0
Msa0905450 MtrunA17_Chr4g0012801 33.624 229 127 9 25 237 39 258 7.57e-26 102
Msa0905450 MtrunA17_Chr7g0231221 31.674 221 131 9 33 237 53 269 1.46e-23 95.9
Msa0905450 MtrunA17_Chr7g0231211 32.143 224 128 10 30 237 49 264 1.97e-23 95.5
Msa0905450 MtrunA17_Chr4g0055601 29.148 223 146 8 28 240 28 248 2.30e-19 84.3
Msa0905450 MtrunA17_Chr8g0359971 50.649 77 37 1 163 238 1 77 3.38e-19 79.3
Msa0905450 MtrunA17_Chr4g0055061 29.528 254 152 12 1 237 3 246 6.98e-18 80.1
Msa0905450 MtrunA17_Chr5g0399811 26.613 248 164 10 3 240 9 248 3.47e-17 78.2
Msa0905450 MtrunA17_Chr4g0055561 27.083 240 160 9 9 237 9 244 2.68e-16 75.9
Msa0905450 MtrunA17_Chr1g0193571 59.259 54 22 0 187 240 4 57 3.80e-16 70.9
Msa0905450 MtrunA17_Chr4g0038741 29.817 218 122 9 39 237 32 237 7.71e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0905450 AT2G03090.1 76.190 252 48 3 1 242 3 252 1.91e-138 389
Msa0905450 AT3G29030.1 83.028 218 36 1 28 244 38 255 1.01e-136 385
Msa0905450 AT1G69530.2 76.000 250 51 2 1 242 1 249 2.65e-136 384
Msa0905450 AT1G69530.1 76.000 250 51 2 1 242 1 249 2.65e-136 384
Msa0905450 AT1G69530.3 76.423 246 49 2 1 238 1 245 5.49e-135 381
Msa0905450 AT1G26770.1 76.400 250 49 2 1 242 1 248 1.27e-134 379
Msa0905450 AT1G26770.2 76.400 250 49 2 1 242 11 258 1.84e-134 379
Msa0905450 AT5G56320.1 68.775 253 66 3 1 242 1 251 3.37e-129 365
Msa0905450 AT5G56320.2 68.775 253 66 3 1 242 1 251 3.37e-129 365
Msa0905450 AT5G56320.3 68.775 253 66 3 1 242 1 251 1.13e-128 366
Msa0905450 AT2G40610.1 68.924 251 66 4 2 242 5 253 1.85e-123 351
Msa0905450 AT2G39700.1 66.667 243 70 3 11 242 13 255 2.14e-116 333
Msa0905450 AT5G02260.1 70.667 225 56 2 28 242 32 256 4.76e-116 332
Msa0905450 AT1G69530.4 67.600 250 42 3 1 242 1 219 7.41e-116 330
Msa0905450 AT1G69530.5 71.304 230 55 3 1 222 1 227 3.93e-115 330
Msa0905450 AT5G05290.1 63.200 250 82 3 2 242 7 255 4.37e-115 330
Msa0905450 AT2G37640.1 70.222 225 57 2 28 242 36 260 9.46e-114 327
Msa0905450 AT3G55500.1 62.109 256 83 4 1 242 3 258 5.17e-112 322
Msa0905450 AT2G28950.1 64.453 256 76 4 1 242 1 255 5.94e-112 322
Msa0905450 AT4G01630.1 59.036 249 90 4 1 237 1 249 1.12e-105 306
Msa0905450 AT1G20190.1 64.159 226 70 3 24 238 22 247 4.78e-102 297
Msa0905450 AT2G37640.2 67.788 208 57 2 45 242 28 235 4.82e-101 294
Msa0905450 AT5G39280.1 55.708 219 91 1 28 240 54 272 9.23e-89 264
Msa0905450 AT5G39300.1 55.708 219 91 1 28 240 55 273 3.13e-88 263
Msa0905450 AT5G39270.1 56.164 219 90 1 28 240 58 276 5.64e-88 262
Msa0905450 AT5G39290.1 55.251 219 92 1 28 240 58 276 4.94e-87 259
Msa0905450 AT1G12560.1 52.893 242 104 3 6 237 14 255 2.00e-84 252
Msa0905450 AT3G15370.1 51.383 253 112 7 1 243 1 252 1.10e-83 250
Msa0905450 AT5G39310.1 55.204 221 92 2 27 240 89 309 2.30e-83 251
Msa0905450 AT1G62980.1 55.357 224 88 4 28 240 31 253 3.87e-81 244
Msa0905450 AT5G39260.1 50.813 246 110 3 6 240 14 259 8.47e-81 243
Msa0905450 AT1G20190.2 60.963 187 62 3 63 238 2 188 1.41e-79 238
Msa0905450 AT3G03220.1 50.000 224 103 2 28 242 40 263 3.28e-78 237
Msa0905450 AT3G15370.2 46.290 283 111 8 1 243 1 282 5.82e-77 234
Msa0905450 AT4G38210.1 47.431 253 120 4 2 242 3 254 3.52e-75 229
Msa0905450 AT4G28250.1 34.413 247 145 9 7 240 15 257 4.15e-31 115
Msa0905450 AT2G20750.1 33.186 226 137 7 28 240 40 264 1.26e-30 115
Msa0905450 AT4G28250.2 33.333 246 143 9 7 240 15 251 8.78e-28 107
Msa0905450 AT1G65680.1 32.000 225 134 8 28 237 47 267 4.26e-25 100
Msa0905450 AT2G20750.2 35.152 165 95 5 28 181 40 203 3.05e-23 94.4
Msa0905450 AT1G65681.1 32.536 209 124 9 42 237 12 216 4.85e-22 91.3
Msa0905450 AT2G45110.1 32.301 226 126 9 31 237 36 253 8.89e-22 91.3
Msa0905450 AT4G28250.4 34.211 190 106 7 7 186 15 195 6.71e-21 87.8
Msa0905450 AT4G28250.3 34.831 178 97 7 14 181 22 190 1.96e-20 86.7
Msa0905450 AT3G60570.1 28.049 246 158 7 6 237 11 251 3.00e-19 84.3
Msa0905450 AT4G17030.1 28.794 257 161 9 1 243 1 249 4.80e-19 83.6
Msa0905450 AT3G45970.2 28.095 210 125 9 46 237 14 215 1.45e-14 71.2
Msa0905450 AT3G60570.2 26.829 205 132 6 46 237 4 203 5.29e-14 69.3
Msa0905450 AT3G45970.1 27.053 207 125 9 51 239 46 244 6.55e-12 64.3
Msa0905450 AT4G38400.1 25.980 204 126 9 51 237 47 242 4.10e-11 62.0
Msa0905450 AT3G45960.2 26.471 204 125 9 51 237 46 241 8.33e-11 60.8

Find 96 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCATAGATGTTGAAATT+TGG 0.200578 6_2:-3569331 Msa0905450:three_prime_UTR
TATATGCAAGATGCATTTAA+AGG 0.216975 6_2:+3569678 None:intergenic
TCCATGGCTATAGTAGAAAT+TGG 0.222290 6_2:-3571221 Msa0905450:CDS
CTAAACTAAGTCATAGTTAA+AGG 0.241625 6_2:-3569642 Msa0905450:three_prime_UTR
GAGCCATGGAGACACCATTT+TGG 0.252914 6_2:+3570518 None:intergenic
AATGCACATGCAACCTTCTA+TGG 0.293252 6_2:-3571189 Msa0905450:CDS
CATCTAGGCTTTCTTGTTCT+AGG 0.294548 6_2:-3571270 Msa0905450:CDS
GAAATTTGGCACAACTAAAA+TGG 0.299207 6_2:-3569317 Msa0905450:three_prime_UTR
TCTAGTCCTTGAACCTTTGA+TGG 0.309672 6_2:+3569883 None:intergenic
GTAGAAGAAGAGGTGGAATA+AGG 0.318290 6_2:-3569985 Msa0905450:CDS
GCCCCACCCAGTTGGTCCTT+TGG 0.320692 6_2:-3569740 Msa0905450:CDS
GGAATGGAGTTGGAATAAAT+AGG 0.331817 6_2:+3571444 None:intergenic
GGCAAGCCATGTCAAGGAAT+TGG 0.336529 6_2:-3569859 Msa0905450:CDS
AACTTGTATAGTCAAGGATA+TGG 0.336716 6_2:-3570626 Msa0905450:CDS
CAAGGAATTGGGGACAAAAT+TGG 0.338609 6_2:-3569847 Msa0905450:CDS
GCAAGCCATGTCAAGGAATT+GGG 0.340806 6_2:-3569858 Msa0905450:CDS
TCAGGTGGTGCATGTGGATA+TGG 0.358218 6_2:-3570650 Msa0905450:intron
TTGTTCCTGTTGTTTATAGA+AGG 0.359748 6_2:-3570379 Msa0905450:intron
CCATGGCTATAGTAGAAATT+GGG 0.360472 6_2:-3571220 Msa0905450:CDS
CCATCTCTAATTTCCGTTTG+AGG 0.374300 6_2:+3569035 None:intergenic
AGCATCACTGCCACCATAGA+AGG 0.378869 6_2:+3571176 None:intergenic
GAGAGATCAAAATGGTGATT+AGG 0.389572 6_2:+3570443 None:intergenic
TATGGTGGCAGTGATGCTTC+TGG 0.392725 6_2:-3571171 Msa0905450:CDS
CAGAGCAACTCTTATTTGAA+TGG 0.396658 6_2:-3569824 Msa0905450:CDS
GGTTTGTCCAAAGGACCAAC+TGG 0.413288 6_2:+3569733 None:intergenic
TAGTACTCAATAAGTGTTAG+TGG 0.413325 6_2:-3569564 Msa0905450:three_prime_UTR
TGAGCAATGTGTTGGAAAAC+AGG 0.417463 6_2:+3570416 None:intergenic
ATATGCAAGATGCATTTAAA+GGG 0.425007 6_2:+3569679 None:intergenic
TTTGTAGTCACCACTGGTAA+TGG 0.425157 6_2:-3569788 Msa0905450:CDS
TTAGTCCTTGTGACTAATGT+TGG 0.430036 6_2:-3569932 Msa0905450:CDS
ATGTAGTATACTTTAATTCA+AGG 0.432735 6_2:-3569286 Msa0905450:three_prime_UTR
AATTACCTTCTATAAACAAC+AGG 0.442368 6_2:+3570374 None:intergenic
TCAAAGGTTCAAGGACTAGA+TGG 0.459280 6_2:-3569880 Msa0905450:CDS
TTCAACAATGGTTTAAGTTG+TGG 0.465134 6_2:-3570572 Msa0905450:CDS
TATTGTTATCTTGCCTCAAA+CGG 0.468427 6_2:-3569048 Msa0905450:three_prime_UTR
GGAATAAGGTTCACAATCAA+TGG 0.470548 6_2:-3569971 Msa0905450:CDS
GTGACTAATGTTGGAGGTGC+AGG 0.476012 6_2:-3569923 Msa0905450:CDS
CTTTATATTGAGCAATGTGT+TGG 0.478496 6_2:+3570408 None:intergenic
CTTTCATTTGTAGTCACCAC+TGG 0.482315 6_2:-3569794 Msa0905450:CDS
CTGTAGCCATCAAAGGTTCA+AGG 0.485843 6_2:-3569889 Msa0905450:CDS
TCCAAAGGACCAACTGGGTG+GGG 0.487484 6_2:+3569739 None:intergenic
GAATGGAGTTGGAATAAATA+GGG 0.488366 6_2:+3571445 None:intergenic
TCCTTGATCTCATATGTCCA+TGG 0.488957 6_2:-3571237 Msa0905450:CDS
ATACTTAAACAATATTGTAA+AGG 0.491642 6_2:+3569164 None:intergenic
GTCCTTGTGACTAATGTTGG+AGG 0.495647 6_2:-3569929 Msa0905450:CDS
AATGTGCTAGTGACCCAAAA+TGG 0.497071 6_2:-3570532 Msa0905450:CDS
TGAAGCATTGACACATATAC+AGG 0.497087 6_2:+3569348 None:intergenic
CACATTGCTCAATATAAAGC+TGG 0.505971 6_2:-3570404 Msa0905450:CDS
GCTATAGTAGAAATTGGGGT+TGG 0.507885 6_2:-3571215 Msa0905450:CDS
AGGGTAAGGTGTAGAAGAAG+AGG 0.509744 6_2:-3569995 Msa0905450:CDS
AGTGATGCTTCTGGCACAAT+GGG 0.518333 6_2:-3571162 Msa0905450:intron
ACATTACACAAATGAAGCAT+TGG 0.519266 6_2:+3569102 None:intergenic
CCCAATTTCTACTATAGCCA+TGG 0.522120 6_2:+3571220 None:intergenic
GCCACTAATTTCTGTCCACC+TGG 0.524649 6_2:-3570482 Msa0905450:CDS
TTTAACTGAGGATGATAAAG+GGG 0.530915 6_2:-3569252 Msa0905450:three_prime_UTR
GCCATGGACATATGAGATCA+AGG 0.531008 6_2:+3571236 None:intergenic
TTAATGTTGCCCCACCCAGT+TGG 0.531923 6_2:-3569748 Msa0905450:CDS
AGATCAAAATGGTGATTAGG+AGG 0.535090 6_2:+3570446 None:intergenic
CAGGTTGAGAGAGATCAAAA+TGG 0.536275 6_2:+3570435 None:intergenic
ACTTGTATAGTCAAGGATAT+GGG 0.538764 6_2:-3570625 Msa0905450:CDS
TGTAGTATACTTTAATTCAA+GGG 0.539042 6_2:-3569285 Msa0905450:three_prime_UTR
TTTAAAGGGTTAGTTAGTAG+AGG 0.540571 6_2:+3569693 None:intergenic
ATTTCTGTCCACCTGGTGGT+TGG 0.547131 6_2:-3570475 Msa0905450:CDS
TCCTTTGGACAAACCTACAC+TGG 0.547722 6_2:-3569725 Msa0905450:CDS
GAGGAACTGCCTTCCAGTGT+AGG 0.551003 6_2:+3569712 None:intergenic
TTGTCCCCAATTCCTTGACA+TGG 0.556187 6_2:+3569853 None:intergenic
GACCCAAAATGGTGTCTCCA+TGG 0.557622 6_2:-3570521 Msa0905450:CDS
GTCCAAAGGACCAACTGGGT+GGG 0.563335 6_2:+3569738 None:intergenic
GTAAGGTGTAGAAGAAGAGG+TGG 0.567385 6_2:-3569992 Msa0905450:CDS
AAAATTTCAGGTGGTGCATG+TGG 0.568241 6_2:-3570656 Msa0905450:intron
CAGTGATGCTTCTGGCACAA+TGG 0.576572 6_2:-3571163 Msa0905450:CDS
TATGGAAACTTGTATAGTCA+AGG 0.576631 6_2:-3570632 Msa0905450:CDS
TCCAGTGTAGGTTTGTCCAA+AGG 0.584012 6_2:+3569724 None:intergenic
GTGCATTCTGTAGCCATCAA+AGG 0.587053 6_2:-3569896 Msa0905450:CDS
ACCAGGTGGACAGAAATTAG+TGG 0.590692 6_2:+3570481 None:intergenic
TTTGAGTAAATAGAAGTGAT+CGG 0.592665 6_2:+3569416 None:intergenic
TATATATGTCGATGTCGCGA+TGG 0.601763 6_2:+3569446 None:intergenic
CAGTAACAACAATGGAGCCA+TGG 0.606178 6_2:+3570504 None:intergenic
GGAGGGTCACACCAACCACC+AGG 0.606947 6_2:+3570464 None:intergenic
CACCTCCAACATTAGTCACA+AGG 0.606977 6_2:+3569927 None:intergenic
AGCACTGCATTATTCAACAA+TGG 0.608720 6_2:-3570584 Msa0905450:CDS
CTAGATGGCAAGCCATGTCA+AGG 0.612177 6_2:-3569865 Msa0905450:CDS
TGTCCAAAGGACCAACTGGG+TGG 0.615300 6_2:+3569737 None:intergenic
CATGGCTATAGTAGAAATTG+GGG 0.616292 6_2:-3571219 Msa0905450:CDS
ACTAATTTCTGTCCACCTGG+TGG 0.617803 6_2:-3570479 Msa0905450:CDS
CAAGCCATGTCAAGGAATTG+GGG 0.622367 6_2:-3569857 Msa0905450:CDS
TTGGACAAACCTACACTGGA+AGG 0.627049 6_2:-3569721 Msa0905450:CDS
ATGTATCTGACACGTGTCAG+TGG 0.627713 6_2:-3569613 Msa0905450:three_prime_UTR
ATTAGTGGCAGTAACAACAA+TGG 0.635904 6_2:+3570496 None:intergenic
GCACATGCAACCTTCTATGG+TGG 0.645972 6_2:-3571186 Msa0905450:CDS
TGGAGTTGGAATAAATAGGG+AGG 0.646851 6_2:+3571448 None:intergenic
TCTGACACGTGTCAGTGGAG+CGG 0.661239 6_2:-3569608 Msa0905450:three_prime_UTR
GATCAAAATGGTGATTAGGA+GGG 0.666299 6_2:+3570447 None:intergenic
GTTTGTCCAAAGGACCAACT+GGG 0.667033 6_2:+3569734 None:intergenic
GGGTCACACCAACCACCAGG+TGG 0.687412 6_2:+3570467 None:intergenic
AATACTATGACCATTACCAG+TGG 0.725625 6_2:+3569778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATATAAAAATTTC+AGG - chr6_2:3569845-3569864 Msa0905450:CDS 10.0%
!! AACAAAAATATAAAAATTTC+AGG - chr6_2:3569845-3569864 Msa0905450:CDS 10.0%
!!! TAGTTTTAAAATGTTGTTAA+TGG - chr6_2:3569421-3569440 Msa0905450:three_prime_UTR 15.0%
!! AAAAATATAAAAATTTCAGG+TGG - chr6_2:3569848-3569867 Msa0905450:CDS 15.0%
!! AACAGAAAATTACTAAAATT+GGG + chr6_2:3570222-3570241 None:intergenic 15.0%
!! AAACAGAAAATTACTAAAAT+TGG + chr6_2:3570223-3570242 None:intergenic 15.0%
!!! TTCATTCAATAATATTTTAG+AGG - chr6_2:3570330-3570349 Msa0905450:intron 15.0%
!! ATACTTAAACAATATTGTAA+AGG + chr6_2:3571352-3571371 None:intergenic 15.0%
!!! TAGTTTTAAAATGTTGTTAA+TGG - chr6_2:3569421-3569440 Msa0905450:three_prime_UTR 15.0%
!! AAAAATATAAAAATTTCAGG+TGG - chr6_2:3569848-3569867 Msa0905450:CDS 15.0%
!! AACAGAAAATTACTAAAATT+GGG + chr6_2:3570222-3570241 None:intergenic 15.0%
!! AAACAGAAAATTACTAAAAT+TGG + chr6_2:3570223-3570242 None:intergenic 15.0%
!!! TTCATTCAATAATATTTTAG+AGG - chr6_2:3570330-3570349 Msa0905450:intron 15.0%
!! ATACTTAAACAATATTGTAA+AGG + chr6_2:3571352-3571371 None:intergenic 15.0%
!!! GAGTTTTTGTATTTTTTTGA+GGG + chr6_2:3569093-3569112 None:intergenic 20.0%
!!! TGAGTTTTTGTATTTTTTTG+AGG + chr6_2:3569094-3569113 None:intergenic 20.0%
!! ATGTGAACATAAAGAAAAAA+AGG + chr6_2:3569163-3569182 None:intergenic 20.0%
!! CAATTACAAGTACAATATAA+AGG + chr6_2:3569523-3569542 None:intergenic 20.0%
!! ACAGAAAATTACTAAAATTG+GGG + chr6_2:3570221-3570240 None:intergenic 20.0%
!!! TTGTTTCAGTTTGTTATTTT+CGG - chr6_2:3570243-3570262 Msa0905450:intron 20.0%
!! ACAACTATTAAGCTTAAATA+GGG + chr6_2:3570290-3570309 None:intergenic 20.0%
!! TACAACTATTAAGCTTAAAT+AGG + chr6_2:3570291-3570310 None:intergenic 20.0%
!!! ATGAATAAAAGTTGTCTTTT+AGG + chr6_2:3570315-3570334 None:intergenic 20.0%
!! ATGTAGTATACTTTAATTCA+AGG - chr6_2:3571227-3571246 Msa0905450:CDS 20.0%
!! TGTAGTATACTTTAATTCAA+GGG - chr6_2:3571228-3571247 Msa0905450:CDS 20.0%
!!! GAGTTTTTGTATTTTTTTGA+GGG + chr6_2:3569093-3569112 None:intergenic 20.0%
!!! TGAGTTTTTGTATTTTTTTG+AGG + chr6_2:3569094-3569113 None:intergenic 20.0%
!! ATGTGAACATAAAGAAAAAA+AGG + chr6_2:3569163-3569182 None:intergenic 20.0%
!! CAATTACAAGTACAATATAA+AGG + chr6_2:3569523-3569542 None:intergenic 20.0%
!! ACAGAAAATTACTAAAATTG+GGG + chr6_2:3570221-3570240 None:intergenic 20.0%
!!! TTGTTTCAGTTTGTTATTTT+CGG - chr6_2:3570243-3570262 Msa0905450:intron 20.0%
!! ACAACTATTAAGCTTAAATA+GGG + chr6_2:3570290-3570309 None:intergenic 20.0%
!! TACAACTATTAAGCTTAAAT+AGG + chr6_2:3570291-3570310 None:intergenic 20.0%
!!! ATGAATAAAAGTTGTCTTTT+AGG + chr6_2:3570315-3570334 None:intergenic 20.0%
!! ATGTAGTATACTTTAATTCA+AGG - chr6_2:3571227-3571246 Msa0905450:CDS 20.0%
!! TGTAGTATACTTTAATTCAA+GGG - chr6_2:3571228-3571247 Msa0905450:CDS 20.0%
!!! TTTGTATTTTTTTGAGGGAA+TGG + chr6_2:3569088-3569107 None:intergenic 25.0%
! AGAAAAAAAGGAAGACATAA+GGG + chr6_2:3569151-3569170 None:intergenic 25.0%
! AAGAAAAAAAGGAAGACATA+AGG + chr6_2:3569152-3569171 None:intergenic 25.0%
!! GTACAATATAAAGGATTTTG+AGG + chr6_2:3569514-3569533 None:intergenic 25.0%
! AATTACCTTCTATAAACAAC+AGG + chr6_2:3570142-3570161 None:intergenic 25.0%
! AAGAAAAAAAGTTAGCATCA+TGG + chr6_2:3570475-3570494 None:intergenic 25.0%
!!! ATGCATGGTTTTATATTGAA+GGG - chr6_2:3570499-3570518 Msa0905450:CDS 25.0%
! ATATGCAAGATGCATTTAAA+GGG + chr6_2:3570837-3570856 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG + chr6_2:3570838-3570857 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG - chr6_2:3570871-3570890 Msa0905450:intron 25.0%
! TTTGAGTAAATAGAAGTGAT+CGG + chr6_2:3571100-3571119 None:intergenic 25.0%
!!! TTTTTAACTGAGGATGATAA+AGG - chr6_2:3571259-3571278 Msa0905450:CDS 25.0%
!!! TTTTAACTGAGGATGATAAA+GGG - chr6_2:3571260-3571279 Msa0905450:CDS 25.0%
!!! TTTGTATTTTTTTGAGGGAA+TGG + chr6_2:3569088-3569107 None:intergenic 25.0%
! AGAAAAAAAGGAAGACATAA+GGG + chr6_2:3569151-3569170 None:intergenic 25.0%
! AAGAAAAAAAGGAAGACATA+AGG + chr6_2:3569152-3569171 None:intergenic 25.0%
!! GTACAATATAAAGGATTTTG+AGG + chr6_2:3569514-3569533 None:intergenic 25.0%
! AATTACCTTCTATAAACAAC+AGG + chr6_2:3570142-3570161 None:intergenic 25.0%
! AAGAAAAAAAGTTAGCATCA+TGG + chr6_2:3570475-3570494 None:intergenic 25.0%
!!! ATGCATGGTTTTATATTGAA+GGG - chr6_2:3570499-3570518 Msa0905450:CDS 25.0%
! ATATGCAAGATGCATTTAAA+GGG + chr6_2:3570837-3570856 None:intergenic 25.0%
! TATATGCAAGATGCATTTAA+AGG + chr6_2:3570838-3570857 None:intergenic 25.0%
! CTAAACTAAGTCATAGTTAA+AGG - chr6_2:3570871-3570890 Msa0905450:intron 25.0%
! TTTGAGTAAATAGAAGTGAT+CGG + chr6_2:3571100-3571119 None:intergenic 25.0%
!!! TTTTTAACTGAGGATGATAA+AGG - chr6_2:3571259-3571278 Msa0905450:CDS 25.0%
!!! TTTTAACTGAGGATGATAAA+GGG - chr6_2:3571260-3571279 Msa0905450:CDS 25.0%
GAATGGAGTTGGAATAAATA+GGG + chr6_2:3569071-3569090 None:intergenic 30.0%
! TATGTTCTAGCTATACTTTG+TGG - chr6_2:3569610-3569629 Msa0905450:three_prime_UTR 30.0%
TAGTTCGGCTATTAAAACAA+TGG + chr6_2:3569644-3569663 None:intergenic 30.0%
!!! TTGTTTTGGCAATTCGATTA+GGG + chr6_2:3569734-3569753 None:intergenic 30.0%
!!! ATTGTTTTGGCAATTCGATT+AGG + chr6_2:3569735-3569754 None:intergenic 30.0%
! AGTTAATGACTCGATTGTTT+TGG + chr6_2:3569748-3569767 None:intergenic 30.0%
AAACAATCGAGTCATTAACT+TGG - chr6_2:3569748-3569767 Msa0905450:CDS 30.0%
! GCAAACACATTTGTTAGTTA+TGG + chr6_2:3569813-3569832 None:intergenic 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr6_2:3569881-3569900 Msa0905450:CDS 30.0%
AACTTGTATAGTCAAGGATA+TGG - chr6_2:3569887-3569906 Msa0905450:CDS 30.0%
ACTTGTATAGTCAAGGATAT+GGG - chr6_2:3569888-3569907 Msa0905450:CDS 30.0%
!! TTCAACAATGGTTTAAGTTG+TGG - chr6_2:3569941-3569960 Msa0905450:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG + chr6_2:3570108-3570127 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG - chr6_2:3570134-3570153 Msa0905450:intron 30.0%
!!! TTTGTTATTTTCGGCTCATT+AGG - chr6_2:3570252-3570271 Msa0905450:intron 30.0%
!!! TTGTTATTTTCGGCTCATTA+GGG - chr6_2:3570253-3570272 Msa0905450:intron 30.0%
!!! CTTTTTTTCTTCTTCATGCA+TGG - chr6_2:3570484-3570503 Msa0905450:CDS 30.0%
!!! CATGCATGGTTTTATATTGA+AGG - chr6_2:3570498-3570517 Msa0905450:CDS 30.0%
!!! TGGTTTTATATTGAAGGGTA+AGG - chr6_2:3570504-3570523 Msa0905450:CDS 30.0%
!! TTTAAAGGGTTAGTTAGTAG+AGG + chr6_2:3570823-3570842 None:intergenic 30.0%
TAGTACTCAATAAGTGTTAG+TGG - chr6_2:3570949-3570968 Msa0905450:intron 30.0%
! GCACTTTTAATATGAAGTGT+TGG + chr6_2:3570987-3571006 None:intergenic 30.0%
GCTTCATAGATGTTGAAATT+TGG - chr6_2:3571182-3571201 Msa0905450:CDS 30.0%
GAAATTTGGCACAACTAAAA+TGG - chr6_2:3571196-3571215 Msa0905450:CDS 30.0%
TTTAACTGAGGATGATAAAG+GGG - chr6_2:3571261-3571280 Msa0905450:CDS 30.0%
ACATTACACAAATGAAGCAT+TGG + chr6_2:3571414-3571433 None:intergenic 30.0%
TATTGTTATCTTGCCTCAAA+CGG - chr6_2:3571465-3571484 Msa0905450:five_prime_UTR 30.0%
GAATGGAGTTGGAATAAATA+GGG + chr6_2:3569071-3569090 None:intergenic 30.0%
! TATGTTCTAGCTATACTTTG+TGG - chr6_2:3569610-3569629 Msa0905450:three_prime_UTR 30.0%
TAGTTCGGCTATTAAAACAA+TGG + chr6_2:3569644-3569663 None:intergenic 30.0%
!!! TTGTTTTGGCAATTCGATTA+GGG + chr6_2:3569734-3569753 None:intergenic 30.0%
!!! ATTGTTTTGGCAATTCGATT+AGG + chr6_2:3569735-3569754 None:intergenic 30.0%
! AGTTAATGACTCGATTGTTT+TGG + chr6_2:3569748-3569767 None:intergenic 30.0%
AAACAATCGAGTCATTAACT+TGG - chr6_2:3569748-3569767 Msa0905450:CDS 30.0%
! GCAAACACATTTGTTAGTTA+TGG + chr6_2:3569813-3569832 None:intergenic 30.0%
TATGGAAACTTGTATAGTCA+AGG - chr6_2:3569881-3569900 Msa0905450:CDS 30.0%
AACTTGTATAGTCAAGGATA+TGG - chr6_2:3569887-3569906 Msa0905450:CDS 30.0%
ACTTGTATAGTCAAGGATAT+GGG - chr6_2:3569888-3569907 Msa0905450:CDS 30.0%
!! TTCAACAATGGTTTAAGTTG+TGG - chr6_2:3569941-3569960 Msa0905450:CDS 30.0%
CTTTATATTGAGCAATGTGT+TGG + chr6_2:3570108-3570127 None:intergenic 30.0%
! TTGTTCCTGTTGTTTATAGA+AGG - chr6_2:3570134-3570153 Msa0905450:intron 30.0%
!!! TTTGTTATTTTCGGCTCATT+AGG - chr6_2:3570252-3570271 Msa0905450:intron 30.0%
!!! TTGTTATTTTCGGCTCATTA+GGG - chr6_2:3570253-3570272 Msa0905450:intron 30.0%
!!! CTTTTTTTCTTCTTCATGCA+TGG - chr6_2:3570484-3570503 Msa0905450:CDS 30.0%
!!! CATGCATGGTTTTATATTGA+AGG - chr6_2:3570498-3570517 Msa0905450:CDS 30.0%
!!! TGGTTTTATATTGAAGGGTA+AGG - chr6_2:3570504-3570523 Msa0905450:CDS 30.0%
!! TTTAAAGGGTTAGTTAGTAG+AGG + chr6_2:3570823-3570842 None:intergenic 30.0%
TAGTACTCAATAAGTGTTAG+TGG - chr6_2:3570949-3570968 Msa0905450:intron 30.0%
! GCACTTTTAATATGAAGTGT+TGG + chr6_2:3570987-3571006 None:intergenic 30.0%
GCTTCATAGATGTTGAAATT+TGG - chr6_2:3571182-3571201 Msa0905450:CDS 30.0%
GAAATTTGGCACAACTAAAA+TGG - chr6_2:3571196-3571215 Msa0905450:CDS 30.0%
TTTAACTGAGGATGATAAAG+GGG - chr6_2:3571261-3571280 Msa0905450:CDS 30.0%
ACATTACACAAATGAAGCAT+TGG + chr6_2:3571414-3571433 None:intergenic 30.0%
TATTGTTATCTTGCCTCAAA+CGG - chr6_2:3571465-3571484 Msa0905450:five_prime_UTR 30.0%
GGAATGGAGTTGGAATAAAT+AGG + chr6_2:3569072-3569091 None:intergenic 35.0%
!!! TTTTTTTGAGGGAATGGAGT+TGG + chr6_2:3569082-3569101 None:intergenic 35.0%
CTTTCTTGTTGCATTTATGC+AGG - chr6_2:3569210-3569229 Msa0905450:three_prime_UTR 35.0%
TCCATGGCTATAGTAGAAAT+TGG - chr6_2:3569292-3569311 Msa0905450:three_prime_UTR 35.0%
CCATGGCTATAGTAGAAATT+GGG - chr6_2:3569293-3569312 Msa0905450:three_prime_UTR 35.0%
CATGGCTATAGTAGAAATTG+GGG - chr6_2:3569294-3569313 Msa0905450:three_prime_UTR 35.0%
! TGCTGCAAACTTTTACATTG+CGG - chr6_2:3569447-3569466 Msa0905450:three_prime_UTR 35.0%
AAAATTCTTAGCCATGCTCA+TGG + chr6_2:3569569-3569588 None:intergenic 35.0%
! AGCATGGCTAAGAATTTTGT+TGG - chr6_2:3569571-3569590 Msa0905450:three_prime_UTR 35.0%
! ATTAACTTGGTTGAACTGTC+TGG - chr6_2:3569761-3569780 Msa0905450:CDS 35.0%
AGCACTGCATTATTCAACAA+TGG - chr6_2:3569929-3569948 Msa0905450:CDS 35.0%
ATTAGTGGCAGTAACAACAA+TGG + chr6_2:3570020-3570039 None:intergenic 35.0%
GATCAAAATGGTGATTAGGA+GGG + chr6_2:3570069-3570088 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG + chr6_2:3570070-3570089 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG + chr6_2:3570073-3570092 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG - chr6_2:3570109-3570128 Msa0905450:intron 35.0%
CCTACATCAGTTAAGGATAA+AGG + chr6_2:3570191-3570210 None:intergenic 35.0%
CCTTTATCCTTAACTGATGT+AGG - chr6_2:3570188-3570207 Msa0905450:intron 35.0%
TTATCCTTAACTGATGTAGG+AGG - chr6_2:3570191-3570210 Msa0905450:intron 35.0%
TATCCTTAACTGATGTAGGA+GGG - chr6_2:3570192-3570211 Msa0905450:intron 35.0%
TAAATTGTTAATGACGCCGT+CGG + chr6_2:3570374-3570393 None:intergenic 35.0%
ACAATTTGTGCCTACTTGTT+TGG - chr6_2:3570449-3570468 Msa0905450:CDS 35.0%
GGAATAAGGTTCACAATCAA+TGG - chr6_2:3570542-3570561 Msa0905450:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG - chr6_2:3570581-3570600 Msa0905450:CDS 35.0%
! CAGAGCAACTCTTATTTGAA+TGG - chr6_2:3570689-3570708 Msa0905450:intron 35.0%
AATACTATGACCATTACCAG+TGG + chr6_2:3570738-3570757 None:intergenic 35.0%
!! TGAAGCATTGACACATATAC+AGG + chr6_2:3571168-3571187 None:intergenic 35.0%
GGAATGGAGTTGGAATAAAT+AGG + chr6_2:3569072-3569091 None:intergenic 35.0%
!!! TTTTTTTGAGGGAATGGAGT+TGG + chr6_2:3569082-3569101 None:intergenic 35.0%
CTTTCTTGTTGCATTTATGC+AGG - chr6_2:3569210-3569229 Msa0905450:three_prime_UTR 35.0%
TCCATGGCTATAGTAGAAAT+TGG - chr6_2:3569292-3569311 Msa0905450:three_prime_UTR 35.0%
CCATGGCTATAGTAGAAATT+GGG - chr6_2:3569293-3569312 Msa0905450:three_prime_UTR 35.0%
CATGGCTATAGTAGAAATTG+GGG - chr6_2:3569294-3569313 Msa0905450:three_prime_UTR 35.0%
! TGCTGCAAACTTTTACATTG+CGG - chr6_2:3569447-3569466 Msa0905450:three_prime_UTR 35.0%
AAAATTCTTAGCCATGCTCA+TGG + chr6_2:3569569-3569588 None:intergenic 35.0%
! AGCATGGCTAAGAATTTTGT+TGG - chr6_2:3569571-3569590 Msa0905450:three_prime_UTR 35.0%
! ATTAACTTGGTTGAACTGTC+TGG - chr6_2:3569761-3569780 Msa0905450:CDS 35.0%
AGCACTGCATTATTCAACAA+TGG - chr6_2:3569929-3569948 Msa0905450:CDS 35.0%
ATTAGTGGCAGTAACAACAA+TGG + chr6_2:3570020-3570039 None:intergenic 35.0%
GATCAAAATGGTGATTAGGA+GGG + chr6_2:3570069-3570088 None:intergenic 35.0%
AGATCAAAATGGTGATTAGG+AGG + chr6_2:3570070-3570089 None:intergenic 35.0%
GAGAGATCAAAATGGTGATT+AGG + chr6_2:3570073-3570092 None:intergenic 35.0%
CACATTGCTCAATATAAAGC+TGG - chr6_2:3570109-3570128 Msa0905450:intron 35.0%
CCTACATCAGTTAAGGATAA+AGG + chr6_2:3570191-3570210 None:intergenic 35.0%
CCTTTATCCTTAACTGATGT+AGG - chr6_2:3570188-3570207 Msa0905450:intron 35.0%
TTATCCTTAACTGATGTAGG+AGG - chr6_2:3570191-3570210 Msa0905450:intron 35.0%
TATCCTTAACTGATGTAGGA+GGG - chr6_2:3570192-3570211 Msa0905450:intron 35.0%
TAAATTGTTAATGACGCCGT+CGG + chr6_2:3570374-3570393 None:intergenic 35.0%
ACAATTTGTGCCTACTTGTT+TGG - chr6_2:3570449-3570468 Msa0905450:CDS 35.0%
GGAATAAGGTTCACAATCAA+TGG - chr6_2:3570542-3570561 Msa0905450:CDS 35.0%
TTAGTCCTTGTGACTAATGT+TGG - chr6_2:3570581-3570600 Msa0905450:CDS 35.0%
! CAGAGCAACTCTTATTTGAA+TGG - chr6_2:3570689-3570708 Msa0905450:intron 35.0%
AATACTATGACCATTACCAG+TGG + chr6_2:3570738-3570757 None:intergenic 35.0%
!! TGAAGCATTGACACATATAC+AGG + chr6_2:3571168-3571187 None:intergenic 35.0%
TGGAGTTGGAATAAATAGGG+AGG + chr6_2:3569068-3569087 None:intergenic 40.0%
GCAGGAAAAATGTCTCATCT+AGG - chr6_2:3569228-3569247 Msa0905450:three_prime_UTR 40.0%
CATCTAGGCTTTCTTGTTCT+AGG - chr6_2:3569243-3569262 Msa0905450:three_prime_UTR 40.0%
TCCTTGATCTCATATGTCCA+TGG - chr6_2:3569276-3569295 Msa0905450:three_prime_UTR 40.0%
CCCAATTTCTACTATAGCCA+TGG + chr6_2:3569296-3569315 None:intergenic 40.0%
GCTATAGTAGAAATTGGGGT+TGG - chr6_2:3569298-3569317 Msa0905450:three_prime_UTR 40.0%
AATGCACATGCAACCTTCTA+TGG - chr6_2:3569324-3569343 Msa0905450:three_prime_UTR 40.0%
GCAATATGAAACCATGAGCA+TGG - chr6_2:3569555-3569574 Msa0905450:three_prime_UTR 40.0%
CCATGAATAAGAAGTCTCAC+CGG + chr6_2:3569676-3569695 None:intergenic 40.0%
GTTACAGTTCGAGCGATTTA+AGG + chr6_2:3569707-3569726 None:intergenic 40.0%
! AAAATTTCAGGTGGTGCATG+TGG - chr6_2:3569857-3569876 Msa0905450:CDS 40.0%
AATGTGCTAGTGACCCAAAA+TGG - chr6_2:3569981-3570000 Msa0905450:CDS 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG + chr6_2:3570081-3570100 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG + chr6_2:3570100-3570119 None:intergenic 40.0%
AAACCCTCCTACATCAGTTA+AGG + chr6_2:3570198-3570217 None:intergenic 40.0%
GTAGAAGAAGAGGTGGAATA+AGG - chr6_2:3570528-3570547 Msa0905450:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG + chr6_2:3570633-3570652 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG - chr6_2:3570633-3570652 Msa0905450:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG - chr6_2:3570666-3570685 Msa0905450:intron 40.0%
CTTTCATTTGTAGTCACCAC+TGG - chr6_2:3570719-3570738 Msa0905450:intron 40.0%
TTTGTAGTCACCACTGGTAA+TGG - chr6_2:3570725-3570744 Msa0905450:intron 40.0%
TATATATGTCGATGTCGCGA+TGG + chr6_2:3571070-3571089 None:intergenic 40.0%
!!! GGCGCTTTAGTTTTTAACTG+AGG - chr6_2:3571249-3571268 Msa0905450:CDS 40.0%
TGGAGTTGGAATAAATAGGG+AGG + chr6_2:3569068-3569087 None:intergenic 40.0%
GCAGGAAAAATGTCTCATCT+AGG - chr6_2:3569228-3569247 Msa0905450:three_prime_UTR 40.0%
CATCTAGGCTTTCTTGTTCT+AGG - chr6_2:3569243-3569262 Msa0905450:three_prime_UTR 40.0%
TCCTTGATCTCATATGTCCA+TGG - chr6_2:3569276-3569295 Msa0905450:three_prime_UTR 40.0%
CCCAATTTCTACTATAGCCA+TGG + chr6_2:3569296-3569315 None:intergenic 40.0%
GCTATAGTAGAAATTGGGGT+TGG - chr6_2:3569298-3569317 Msa0905450:three_prime_UTR 40.0%
AATGCACATGCAACCTTCTA+TGG - chr6_2:3569324-3569343 Msa0905450:three_prime_UTR 40.0%
GCAATATGAAACCATGAGCA+TGG - chr6_2:3569555-3569574 Msa0905450:three_prime_UTR 40.0%
CCATGAATAAGAAGTCTCAC+CGG + chr6_2:3569676-3569695 None:intergenic 40.0%
GTTACAGTTCGAGCGATTTA+AGG + chr6_2:3569707-3569726 None:intergenic 40.0%
! AAAATTTCAGGTGGTGCATG+TGG - chr6_2:3569857-3569876 Msa0905450:CDS 40.0%
AATGTGCTAGTGACCCAAAA+TGG - chr6_2:3569981-3570000 Msa0905450:CDS 40.0%
! CAGGTTGAGAGAGATCAAAA+TGG + chr6_2:3570081-3570100 None:intergenic 40.0%
TGAGCAATGTGTTGGAAAAC+AGG + chr6_2:3570100-3570119 None:intergenic 40.0%
AAACCCTCCTACATCAGTTA+AGG + chr6_2:3570198-3570217 None:intergenic 40.0%
GTAGAAGAAGAGGTGGAATA+AGG - chr6_2:3570528-3570547 Msa0905450:CDS 40.0%
TCTAGTCCTTGAACCTTTGA+TGG + chr6_2:3570633-3570652 None:intergenic 40.0%
TCAAAGGTTCAAGGACTAGA+TGG - chr6_2:3570633-3570652 Msa0905450:CDS 40.0%
CAAGGAATTGGGGACAAAAT+TGG - chr6_2:3570666-3570685 Msa0905450:intron 40.0%
CTTTCATTTGTAGTCACCAC+TGG - chr6_2:3570719-3570738 Msa0905450:intron 40.0%
TTTGTAGTCACCACTGGTAA+TGG - chr6_2:3570725-3570744 Msa0905450:intron 40.0%
TATATATGTCGATGTCGCGA+TGG + chr6_2:3571070-3571089 None:intergenic 40.0%
!!! GGCGCTTTAGTTTTTAACTG+AGG - chr6_2:3571249-3571268 Msa0905450:CDS 40.0%
GCCATGGACATATGAGATCA+AGG + chr6_2:3569280-3569299 None:intergenic 45.0%
AGTGATGCTTCTGGCACAAT+GGG - chr6_2:3569351-3569370 Msa0905450:three_prime_UTR 45.0%
AGCCGAACTAGAAATCGAAC+CGG - chr6_2:3569654-3569673 Msa0905450:three_prime_UTR 45.0%
!! CACCGGTTCGATTTCTAGTT+CGG + chr6_2:3569659-3569678 None:intergenic 45.0%
CCGGTGAGACTTCTTATTCA+TGG - chr6_2:3569673-3569692 Msa0905450:three_prime_UTR 45.0%
! TTGAACTGTCTGGTTCGCTT+CGG - chr6_2:3569771-3569790 Msa0905450:CDS 45.0%
! AGCCATGGAGACACCATTTT+GGG + chr6_2:3569997-3570016 None:intergenic 45.0%
CAGTAACAACAATGGAGCCA+TGG + chr6_2:3570012-3570031 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG + chr6_2:3570035-3570054 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG - chr6_2:3570034-3570053 Msa0905450:intron 45.0%
AGCATCATGGCCAAACAAGT+AGG + chr6_2:3570462-3570481 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG - chr6_2:3570518-3570537 Msa0905450:CDS 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG - chr6_2:3570521-3570540 Msa0905450:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG - chr6_2:3570584-3570603 Msa0905450:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG + chr6_2:3570589-3570608 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG - chr6_2:3570617-3570636 Msa0905450:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG - chr6_2:3570624-3570643 Msa0905450:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG - chr6_2:3570655-3570674 Msa0905450:intron 45.0%
CAAGCCATGTCAAGGAATTG+GGG - chr6_2:3570656-3570675 Msa0905450:intron 45.0%
TTGTCCCCAATTCCTTGACA+TGG + chr6_2:3570663-3570682 None:intergenic 45.0%
GTTTGTCCAAAGGACCAACT+GGG + chr6_2:3570782-3570801 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG - chr6_2:3570788-3570807 Msa0905450:intron 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG + chr6_2:3570792-3570811 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG - chr6_2:3570792-3570811 Msa0905450:intron 45.0%
ATGTATCTGACACGTGTCAG+TGG - chr6_2:3570900-3570919 Msa0905450:intron 45.0%
GCCATGGACATATGAGATCA+AGG + chr6_2:3569280-3569299 None:intergenic 45.0%
AGTGATGCTTCTGGCACAAT+GGG - chr6_2:3569351-3569370 Msa0905450:three_prime_UTR 45.0%
AGCCGAACTAGAAATCGAAC+CGG - chr6_2:3569654-3569673 Msa0905450:three_prime_UTR 45.0%
!! CACCGGTTCGATTTCTAGTT+CGG + chr6_2:3569659-3569678 None:intergenic 45.0%
CCGGTGAGACTTCTTATTCA+TGG - chr6_2:3569673-3569692 Msa0905450:three_prime_UTR 45.0%
! TTGAACTGTCTGGTTCGCTT+CGG - chr6_2:3569771-3569790 Msa0905450:CDS 45.0%
! AGCCATGGAGACACCATTTT+GGG + chr6_2:3569997-3570016 None:intergenic 45.0%
CAGTAACAACAATGGAGCCA+TGG + chr6_2:3570012-3570031 None:intergenic 45.0%
ACCAGGTGGACAGAAATTAG+TGG + chr6_2:3570035-3570054 None:intergenic 45.0%
ACTAATTTCTGTCCACCTGG+TGG - chr6_2:3570034-3570053 Msa0905450:intron 45.0%
AGCATCATGGCCAAACAAGT+AGG + chr6_2:3570462-3570481 None:intergenic 45.0%
AGGGTAAGGTGTAGAAGAAG+AGG - chr6_2:3570518-3570537 Msa0905450:CDS 45.0%
GTAAGGTGTAGAAGAAGAGG+TGG - chr6_2:3570521-3570540 Msa0905450:CDS 45.0%
GTCCTTGTGACTAATGTTGG+AGG - chr6_2:3570584-3570603 Msa0905450:CDS 45.0%
CACCTCCAACATTAGTCACA+AGG + chr6_2:3570589-3570608 None:intergenic 45.0%
GTGCATTCTGTAGCCATCAA+AGG - chr6_2:3570617-3570636 Msa0905450:CDS 45.0%
CTGTAGCCATCAAAGGTTCA+AGG - chr6_2:3570624-3570643 Msa0905450:CDS 45.0%
GCAAGCCATGTCAAGGAATT+GGG - chr6_2:3570655-3570674 Msa0905450:intron 45.0%
CAAGCCATGTCAAGGAATTG+GGG - chr6_2:3570656-3570675 Msa0905450:intron 45.0%
TTGTCCCCAATTCCTTGACA+TGG + chr6_2:3570663-3570682 None:intergenic 45.0%
GTTTGTCCAAAGGACCAACT+GGG + chr6_2:3570782-3570801 None:intergenic 45.0%
TCCTTTGGACAAACCTACAC+TGG - chr6_2:3570788-3570807 Msa0905450:intron 45.0%
TCCAGTGTAGGTTTGTCCAA+AGG + chr6_2:3570792-3570811 None:intergenic 45.0%
TTGGACAAACCTACACTGGA+AGG - chr6_2:3570792-3570811 Msa0905450:intron 45.0%
ATGTATCTGACACGTGTCAG+TGG - chr6_2:3570900-3570919 Msa0905450:intron 45.0%
GCACATGCAACCTTCTATGG+TGG - chr6_2:3569327-3569346 Msa0905450:three_prime_UTR 50.0%
AGCATCACTGCCACCATAGA+AGG + chr6_2:3569340-3569359 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG - chr6_2:3569342-3569361 Msa0905450:three_prime_UTR 50.0%
CAGTGATGCTTCTGGCACAA+TGG - chr6_2:3569350-3569369 Msa0905450:three_prime_UTR 50.0%
TCAGGTGGTGCATGTGGATA+TGG - chr6_2:3569863-3569882 Msa0905450:CDS 50.0%
GACCCAAAATGGTGTCTCCA+TGG - chr6_2:3569992-3570011 Msa0905450:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG + chr6_2:3569998-3570017 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG - chr6_2:3570031-3570050 Msa0905450:intron 50.0%
ATTTCTGTCCACCTGGTGGT+TGG - chr6_2:3570038-3570057 Msa0905450:intron 50.0%
GTCGGAAGTTCTTCAGAGGT+GGG + chr6_2:3570356-3570375 None:intergenic 50.0%
! CACCTCTGAAGAACTTCCGA+CGG - chr6_2:3570355-3570374 Msa0905450:intron 50.0%
! GTGACTAATGTTGGAGGTGC+AGG - chr6_2:3570590-3570609 Msa0905450:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG - chr6_2:3570648-3570667 Msa0905450:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG - chr6_2:3570654-3570673 Msa0905450:intron 50.0%
TTAATGTTGCCCCACCCAGT+TGG - chr6_2:3570765-3570784 Msa0905450:intron 50.0%
GGTTTGTCCAAAGGACCAAC+TGG + chr6_2:3570783-3570802 None:intergenic 50.0%
GCACATGCAACCTTCTATGG+TGG - chr6_2:3569327-3569346 Msa0905450:three_prime_UTR 50.0%
AGCATCACTGCCACCATAGA+AGG + chr6_2:3569340-3569359 None:intergenic 50.0%
TATGGTGGCAGTGATGCTTC+TGG - chr6_2:3569342-3569361 Msa0905450:three_prime_UTR 50.0%
CAGTGATGCTTCTGGCACAA+TGG - chr6_2:3569350-3569369 Msa0905450:three_prime_UTR 50.0%
TCAGGTGGTGCATGTGGATA+TGG - chr6_2:3569863-3569882 Msa0905450:CDS 50.0%
GACCCAAAATGGTGTCTCCA+TGG - chr6_2:3569992-3570011 Msa0905450:CDS 50.0%
! GAGCCATGGAGACACCATTT+TGG + chr6_2:3569998-3570017 None:intergenic 50.0%
GCCACTAATTTCTGTCCACC+TGG - chr6_2:3570031-3570050 Msa0905450:intron 50.0%
ATTTCTGTCCACCTGGTGGT+TGG - chr6_2:3570038-3570057 Msa0905450:intron 50.0%
GTCGGAAGTTCTTCAGAGGT+GGG + chr6_2:3570356-3570375 None:intergenic 50.0%
! CACCTCTGAAGAACTTCCGA+CGG - chr6_2:3570355-3570374 Msa0905450:intron 50.0%
! GTGACTAATGTTGGAGGTGC+AGG - chr6_2:3570590-3570609 Msa0905450:CDS 50.0%
CTAGATGGCAAGCCATGTCA+AGG - chr6_2:3570648-3570667 Msa0905450:CDS 50.0%
GGCAAGCCATGTCAAGGAAT+TGG - chr6_2:3570654-3570673 Msa0905450:intron 50.0%
TTAATGTTGCCCCACCCAGT+TGG - chr6_2:3570765-3570784 Msa0905450:intron 50.0%
GGTTTGTCCAAAGGACCAAC+TGG + chr6_2:3570783-3570802 None:intergenic 50.0%
CGTCGGAAGTTCTTCAGAGG+TGG + chr6_2:3570357-3570376 None:intergenic 55.0%
TCCAAAGGACCAACTGGGTG+GGG + chr6_2:3570777-3570796 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG + chr6_2:3570778-3570797 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG + chr6_2:3570779-3570798 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG + chr6_2:3570804-3570823 None:intergenic 55.0%
TCTGACACGTGTCAGTGGAG+CGG - chr6_2:3570905-3570924 Msa0905450:intron 55.0%
CGTCGGAAGTTCTTCAGAGG+TGG + chr6_2:3570357-3570376 None:intergenic 55.0%
TCCAAAGGACCAACTGGGTG+GGG + chr6_2:3570777-3570796 None:intergenic 55.0%
GTCCAAAGGACCAACTGGGT+GGG + chr6_2:3570778-3570797 None:intergenic 55.0%
TGTCCAAAGGACCAACTGGG+TGG + chr6_2:3570779-3570798 None:intergenic 55.0%
GAGGAACTGCCTTCCAGTGT+AGG + chr6_2:3570804-3570823 None:intergenic 55.0%
TCTGACACGTGTCAGTGGAG+CGG - chr6_2:3570905-3570924 Msa0905450:intron 55.0%
CGCCGTCGGAAGTTCTTCAG+AGG + chr6_2:3570360-3570379 None:intergenic 60.0%
CGCCGTCGGAAGTTCTTCAG+AGG + chr6_2:3570360-3570379 None:intergenic 60.0%
GGGTCACACCAACCACCAGG+TGG + chr6_2:3570049-3570068 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG + chr6_2:3570052-3570071 None:intergenic 65.0%
GCCCCACCCAGTTGGTCCTT+TGG - chr6_2:3570773-3570792 Msa0905450:intron 65.0%
GGGTCACACCAACCACCAGG+TGG + chr6_2:3570049-3570068 None:intergenic 65.0%
GGAGGGTCACACCAACCACC+AGG + chr6_2:3570052-3570071 None:intergenic 65.0%
GCCCCACCCAGTTGGTCCTT+TGG - chr6_2:3570773-3570792 Msa0905450:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 3569046 3571489 3569046 ID=Msa0905450;Name=Msa0905450
chr6_2 mRNA 3569046 3571489 3569046 ID=Msa0905450-mRNA-1;Parent=Msa0905450;Name=Msa0905450-mRNA-1;_AED=0.23;_eAED=0.23;_QI=92|1|1|1|0.66|0.75|4|660|244
chr6_2 exon 3569046 3570015 3569046 ID=Msa0905450-mRNA-1:exon:1072;Parent=Msa0905450-mRNA-1
chr6_2 exon 3570380 3570668 3570380 ID=Msa0905450-mRNA-1:exon:1071;Parent=Msa0905450-mRNA-1
chr6_2 exon 3571163 3571303 3571163 ID=Msa0905450-mRNA-1:exon:1070;Parent=Msa0905450-mRNA-1
chr6_2 exon 3571403 3571489 3571403 ID=Msa0905450-mRNA-1:exon:1069;Parent=Msa0905450-mRNA-1
chr6_2 five_prime_UTR 3571403 3571489 3571403 ID=Msa0905450-mRNA-1:five_prime_utr;Parent=Msa0905450-mRNA-1
chr6_2 five_prime_UTR 3571299 3571303 3571299 ID=Msa0905450-mRNA-1:five_prime_utr;Parent=Msa0905450-mRNA-1
chr6_2 CDS 3571163 3571298 3571163 ID=Msa0905450-mRNA-1:cds;Parent=Msa0905450-mRNA-1
chr6_2 CDS 3570380 3570668 3570380 ID=Msa0905450-mRNA-1:cds;Parent=Msa0905450-mRNA-1
chr6_2 CDS 3569706 3570015 3569706 ID=Msa0905450-mRNA-1:cds;Parent=Msa0905450-mRNA-1
chr6_2 three_prime_UTR 3569046 3569705 3569046 ID=Msa0905450-mRNA-1:three_prime_utr;Parent=Msa0905450-mRNA-1
Gene Sequence

>Msa0905450

ATGTCTCATCTAGGCTTTCTTGTTCTAGGAATTATTTTCTCCTTGATCTCATATGTCCATGGCTATAGTAGAAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGTGCATGTGGATATGGAAACTTGTATAGTCAAGGATATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTAAGTTGTGGTGCATGCTATGAAATTAAATGTGCTAGTGACCCAAAATGGTGTCTCCATGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCTAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGGTGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCAGGTGATGTGCATTCTGTAGCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAATTGGGGACAAAATTGGCAGAGCAACTCTTATTTGAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCCAGTTGGTCCTTTGGACAAACCTACACTGGAAGGCAGTTCCTCTACTAA

Protein sequence

>Msa0905450

MSHLGFLVLGIIFSLISYVHGYSRNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCASDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY*